AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37503

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37503.t1 MTR_8g035540 95.732 328 14 0 14 341 1 328 0.0 645
MS.gene37503.t1 MTR_8g035520 74.398 332 80 2 1 332 1 327 2.78e-177 494
MS.gene37503.t1 MTR_6g464510 48.457 324 151 5 12 329 13 326 4.06e-105 311
MS.gene37503.t1 MTR_6g464280 48.148 324 148 6 15 329 12 324 3.48e-101 301
MS.gene37503.t1 MTR_6g464320 46.319 326 155 6 13 329 11 325 1.99e-93 281
MS.gene37503.t1 MTR_8g035500 41.925 322 179 5 12 330 2 318 2.69e-92 278
MS.gene37503.t1 MTR_1g102160 47.239 326 155 7 14 331 11 327 2.76e-92 278
MS.gene37503.t1 MTR_1g102170 46.296 324 153 6 9 325 25 334 5.31e-92 278
MS.gene37503.t1 MTR_6g464120 46.302 311 155 5 15 322 17 318 1.30e-86 270
MS.gene37503.t1 MTR_0007s0520 43.807 331 161 7 7 329 11 324 3.70e-86 263
MS.gene37503.t1 MTR_1g111280 36.025 322 179 9 22 329 34 342 1.44e-53 180
MS.gene37503.t1 MTR_7g406880 33.333 327 193 8 22 329 29 349 2.12e-52 177
MS.gene37503.t1 MTR_6g065430 33.439 314 189 6 27 333 31 331 6.74e-48 164
MS.gene37503.t1 MTR_6g065370 34.007 297 172 7 45 329 49 333 3.58e-47 162
MS.gene37503.t1 MTR_6g065400 34.122 296 173 6 45 329 49 333 5.40e-47 162
MS.gene37503.t1 MTR_4g050140 34.202 307 189 6 27 329 18 315 2.09e-45 157
MS.gene37503.t1 MTR_6g065110 32.323 297 181 5 48 334 53 339 2.39e-45 158
MS.gene37503.t1 MTR_6g065270 33.445 299 175 5 45 329 47 335 2.02e-44 155
MS.gene37503.t1 MTR_6g065120 33.670 297 174 6 45 329 50 335 2.68e-44 155
MS.gene37503.t1 MTR_7g107040 33.540 322 186 9 22 332 15 319 6.12e-44 154
MS.gene37503.t1 MTR_4g086510 34.177 316 186 9 22 329 16 317 1.62e-42 150
MS.gene37503.t1 MTR_1g012430 36.441 236 133 8 18 252 9 228 2.82e-42 149
MS.gene37503.t1 MTR_0007s0480 45.238 168 83 3 170 329 4 170 2.53e-41 142
MS.gene37503.t1 MTR_3g101420 32.063 315 192 10 22 329 15 314 6.73e-41 145
MS.gene37503.t1 MTR_7g056207 32.919 322 196 8 22 336 48 356 1.23e-40 146
MS.gene37503.t1 MTR_3g012440 41.081 185 107 2 69 253 74 256 3.19e-39 142
MS.gene37503.t1 MTR_1g082210 30.000 330 189 10 26 334 37 345 9.20e-38 138
MS.gene37503.t1 MTR_1g089310 37.273 220 117 5 77 291 98 301 1.64e-36 135
MS.gene37503.t1 MTR_1g089310 37.273 220 117 5 77 291 114 317 1.66e-36 135
MS.gene37503.t1 MTR_5g005920 39.474 190 109 4 27 213 26 212 1.66e-36 134
MS.gene37503.t1 MTR_4g086480 32.812 320 188 10 22 332 20 321 3.22e-36 133
MS.gene37503.t1 MTR_7g093950 32.443 262 154 6 77 329 99 346 1.09e-35 132
MS.gene37503.t1 MTR_6g065340 30.063 316 178 8 27 329 43 328 4.30e-35 130
MS.gene37503.t1 MTR_4g086540 34.737 190 112 3 27 216 31 208 1.01e-33 127
MS.gene37503.t1 MTR_1g105020 30.915 317 195 12 22 328 16 318 5.23e-33 125
MS.gene37503.t1 MTR_3g450680 31.385 325 189 12 22 329 24 331 2.93e-32 123
MS.gene37503.t1 MTR_4g086470 31.801 261 157 7 39 295 36 279 6.36e-31 119
MS.gene37503.t1 MTR_5g005850 33.471 242 144 7 22 256 21 252 5.46e-30 117
MS.gene37503.t1 MTR_1g104930 41.053 190 101 4 22 209 20 200 3.38e-29 114
MS.gene37503.t1 MTR_5g005900 35.897 195 115 5 22 211 17 206 3.09e-28 112
MS.gene37503.t1 MTR_7g051020 40.000 190 106 4 22 209 20 203 1.87e-27 110
MS.gene37503.t1 MTR_8g040860 36.500 200 118 5 22 218 24 217 2.03e-27 110
MS.gene37503.t1 MTR_6g022710 28.223 287 170 5 83 335 159 443 3.08e-27 111
MS.gene37503.t1 MTR_1g104933 40.764 157 87 3 55 209 46 198 7.07e-23 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37503.t1 AT2G45600 51.964 331 141 5 15 340 9 326 1.02e-119 348
MS.gene37503.t1 AT2G45610 46.562 320 164 4 13 329 8 323 6.39e-102 303
MS.gene37503.t1 AT5G62180 48.171 328 152 8 15 333 9 327 2.35e-94 284
MS.gene37503.t1 AT5G16080 35.786 299 177 5 22 316 36 323 7.12e-53 178
MS.gene37503.t1 AT1G68620 38.672 256 143 5 4 256 14 258 1.25e-52 177
MS.gene37503.t1 AT5G23530 31.776 321 184 11 26 334 34 331 4.72e-38 139
MS.gene37503.t1 AT5G06570 35.390 308 184 8 22 321 18 318 7.53e-38 138
MS.gene37503.t1 AT5G06570 35.390 308 184 8 22 321 18 318 7.53e-38 138
MS.gene37503.t1 AT5G06570 35.390 308 184 8 22 321 33 333 9.34e-38 138
MS.gene37503.t1 AT5G06570 35.390 308 184 8 22 321 33 333 9.34e-38 138
MS.gene37503.t1 AT1G49640 35.938 192 110 4 22 211 14 194 7.11e-36 132
MS.gene37503.t1 AT3G63010 29.738 343 196 9 21 340 32 352 1.77e-35 132
MS.gene37503.t1 AT5G27320 28.616 318 198 7 26 329 37 339 8.24e-35 130
MS.gene37503.t1 AT3G48690 32.018 228 143 5 22 245 13 232 6.91e-34 127
MS.gene37503.t1 AT1G47480 33.333 246 145 7 8 253 4 230 3.67e-33 125
MS.gene37503.t1 AT1G49650 35.602 191 116 4 22 211 69 253 1.31e-31 122
MS.gene37503.t1 AT3G05120 30.769 286 174 7 26 299 37 310 3.64e-31 120
MS.gene37503.t1 AT1G49660 35.204 196 120 4 18 211 8 198 4.24e-31 120
MS.gene37503.t1 AT1G19190 31.963 219 138 5 21 233 12 225 4.70e-31 119
MS.gene37503.t1 AT2G03550 37.433 187 109 3 23 209 14 192 1.53e-30 118
MS.gene37503.t1 AT3G48700 32.301 226 137 6 28 245 19 236 1.89e-30 118
MS.gene37503.t1 AT5G14310 32.271 251 129 6 42 253 106 354 1.50e-29 118
MS.gene37503.t1 AT3G27320 32.710 214 107 4 77 253 124 337 3.21e-27 111
MS.gene37503.t1 AT3G27320 32.710 214 107 4 77 253 156 369 3.98e-27 111

Find 113 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAACAATGGCAGGAATT+TGG 0.210540 8.3:-60236312 None:intergenic
TGTTTGGAATTAGGTGAATT+TGG 0.218605 8.3:-60235980 None:intergenic
TTGCCAAGGTGCTTTGTTAA+TGG 0.257297 8.3:+60236769 MS.gene37503:CDS
AAAGGAGCTAGCGAAGATTT+TGG 0.271352 8.3:+60236822 MS.gene37503:CDS
GAGGAAGACGGTGGAGGGTT+CGG 0.288881 8.3:-60236187 None:intergenic
TGAAATCTTTGATCATTCTA+AGG 0.290499 8.3:+60236900 MS.gene37503:CDS
CACAAATTCGCCACCGCAAC+CGG 0.311175 8.3:+60236105 MS.gene37503:CDS
ATTGTGCTTTGTTTGGAATT+AGG 0.318456 8.3:-60235989 None:intergenic
AGCACGTAGACCCGTGAAAT+AGG 0.319272 8.3:-60236515 None:intergenic
GTAGAGAATGATGGGGAGTT+TGG 0.319640 8.3:-60236215 None:intergenic
AGGAAGACGGTGGAGGGTTC+GGG 0.325103 8.3:-60236186 None:intergenic
GGCAACAATGGCAGGAATTT+GGG 0.333621 8.3:-60236311 None:intergenic
GGGATCCATTGTGCTTTGTT+TGG 0.344187 8.3:-60235996 None:intergenic
GCAGGGATGGTGGAAGATAA+GGG 0.378351 8.3:-60236275 None:intergenic
AGCAGGGATGGTGGAAGATA+AGG 0.379203 8.3:-60236276 None:intergenic
TAAGGGAGGAAGGGTGGTAG+AGG 0.393535 8.3:-60236258 None:intergenic
CGGTTGCGGTGGCGAATTTG+TGG 0.395908 8.3:-60236104 None:intergenic
GACTGAATCCGAGCTTCGTT+TGG 0.401433 8.3:+60236612 MS.gene37503:CDS
ACAACTTTGGATCACGTATA+CGG 0.411261 8.3:+60236730 MS.gene37503:CDS
TCGAAGGATGGTGGCACGGT+GGG 0.424218 8.3:-60236079 None:intergenic
ACTGCATCGTCGTAGGCTGC+TGG 0.427315 8.3:-60236370 None:intergenic
TATGATCCCTCGAATCTTAA+CGG 0.430500 8.3:-60236557 None:intergenic
ATGCAGTTGATTCTCTTCTC+TGG 0.431764 8.3:+60236386 MS.gene37503:CDS
CTTTGATAAATGTTTCTTGA+TGG 0.434816 8.3:+60236468 MS.gene37503:CDS
TTTCTTGTTAGTGAACCATC+AGG 0.441242 8.3:-60236046 None:intergenic
GCAGCGGAGGAAGACGGTGG+AGG 0.452270 8.3:-60236193 None:intergenic
TGGTCTCTGTCTTTGCCCTC+AGG 0.456073 8.3:-60236691 None:intergenic
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.3:+60236229 MS.gene37503:CDS
ATACCCATCCTCATCAAAAC+AGG 0.463187 8.3:-60236869 None:intergenic
GTATTGCAATCCAACAACTT+TGG 0.464198 8.3:+60236717 MS.gene37503:CDS
GGAAGATAAGGGAGGAAGGG+TGG 0.467019 8.3:-60236264 None:intergenic
TTTGATAAATGTTTCTTGAT+GGG 0.469837 8.3:+60236469 MS.gene37503:CDS
GCTGCTGGGAGGCGATGCTC+AGG 0.470036 8.3:-60236355 None:intergenic
TTGGGCAGCTAATGTGGAGC+AGG 0.470169 8.3:-60236293 None:intergenic
ATGATCCCTCGAATCTTAAC+GGG 0.471871 8.3:-60236556 None:intergenic
TGGCTACGGTGGGGATCCAT+TGG 0.473221 8.3:+60236789 MS.gene37503:CDS
ATCGAAGGATGGTGGCACGG+TGG 0.483039 8.3:-60236080 None:intergenic
TATACGTGATCCAAAGTTGT+TGG 0.491009 8.3:-60236727 None:intergenic
CCATGGAAGTAGAGAATGAT+GGG 0.492333 8.3:-60236223 None:intergenic
ATGAGATCACCTGCTGGTAA+TGG 0.493022 8.3:-60236652 None:intergenic
ATCGTTAACCAAACGAAGCT+CGG 0.493769 8.3:-60236620 None:intergenic
CCCATCATTCTCTACTTCCA+TGG 0.494966 8.3:+60236223 MS.gene37503:CDS
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.3:+60236775 MS.gene37503:CDS
TCAACAGAGGCAACAATGGC+AGG 0.505210 8.3:-60236319 None:intergenic
CTGCATCGTCGTAGGCTGCT+GGG 0.506617 8.3:-60236369 None:intergenic
CAGCTAATGTGGAGCAGGGA+TGG 0.506859 8.3:-60236288 None:intergenic
ACCATGGAAGTAGAGAATGA+TGG 0.507797 8.3:-60236224 None:intergenic
GGTTGCGGTGGCGAATTTGT+GGG 0.510694 8.3:-60236103 None:intergenic
CTACGGTGGGGATCCATTGG+TGG 0.515205 8.3:+60236792 MS.gene37503:CDS
TGGTGGAAGATAAGGGAGGA+AGG 0.516872 8.3:-60236268 None:intergenic
AGGAATTTGGGCAGCTAATG+TGG 0.521371 8.3:-60236299 None:intergenic
TCCATTGGTGGATAAGCAAA+AGG 0.523499 8.3:+60236804 MS.gene37503:CDS
CGTATATTGCCATTACCAGC+AGG 0.526449 8.3:+60236643 MS.gene37503:CDS
ATCCAACGGAATCTGATCCA+TGG 0.529983 8.3:+60236428 MS.gene37503:CDS
TTCACATGGTCTCTGATCCA+TGG 0.534109 8.3:-60236445 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.3:+60236779 MS.gene37503:CDS
CTGACTCCCGTTAAGATTCG+AGG 0.540320 8.3:+60236550 MS.gene37503:CDS
CACGTATACGGTGAAAAGAT+CGG 0.541877 8.3:+60236742 MS.gene37503:CDS
ATCCATGGATCAGATTCCGT+TGG 0.545679 8.3:-60236430 None:intergenic
GGCTGCACACGGGGTGCATG+TGG 0.546061 8.3:+60236843 MS.gene37503:CDS
TTCTTGATGGGAGACAGTGC+CGG 0.548245 8.3:+60236481 MS.gene37503:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.551058 8.3:+60236778 MS.gene37503:CDS
GAAATAGGCTATATTACCTC+CGG 0.551917 8.3:-60236500 None:intergenic
AGGTAATATAGCCTATTTCA+CGG 0.552620 8.3:+60236504 MS.gene37503:CDS
CAGCGGAGGAAGACGGTGGA+GGG 0.554188 8.3:-60236192 None:intergenic
CGAAGGATGGTGGCACGGTG+GGG 0.556375 8.3:-60236078 None:intergenic
TCTTAACGGGAGTCAGATCA+AGG 0.562261 8.3:-60236543 None:intergenic
TGGTCCCTGTGTTTGCCTGA+GGG 0.566573 8.3:+60236676 MS.gene37503:CDS
GTGGTCCCTGTGTTTGCCTG+AGG 0.571411 8.3:+60236675 MS.gene37503:CDS
TGGCGAATTTGTGGGATCGA+AGG 0.576164 8.3:-60236095 None:intergenic
AGTTTGGCAGCGGAGGAAGA+CGG 0.578445 8.3:-60236199 None:intergenic
GAATTTGTGGGATCGAAGGA+TGG 0.578551 8.3:-60236091 None:intergenic
CTTTGCCCTCAGGCAAACAC+AGG 0.580745 8.3:-60236681 None:intergenic
AAAATCAAACTAAACCCTGA+TGG 0.582070 8.3:+60236031 MS.gene37503:CDS
GGTAATATAGCCTATTTCAC+GGG 0.582524 8.3:+60236505 MS.gene37503:CDS
TTCTTGTTAGTGAACCATCA+GGG 0.584038 8.3:-60236045 None:intergenic
GGGATCGAAGGATGGTGGCA+CGG 0.586269 8.3:-60236083 None:intergenic
GGTGGAAGATAAGGGAGGAA+GGG 0.587951 8.3:-60236267 None:intergenic
GTTCGGGAGGAAGAGACGAA+TGG 0.588388 8.3:-60236170 None:intergenic
TCTTTAGAGAGAGCCGGTTG+CGG 0.590395 8.3:-60236118 None:intergenic
TTAGAGAGAGCCGGTTGCGG+TGG 0.595065 8.3:-60236115 None:intergenic
CTAATGTGGAGCAGGGATGG+TGG 0.596208 8.3:-60236285 None:intergenic
AAAAGATCGGACGGTTGCCA+AGG 0.596761 8.3:+60236755 MS.gene37503:CDS
AAGACGGTGGAGGGTTCGGG+AGG 0.598115 8.3:-60236183 None:intergenic
GATGGGGAGTTTGGCAGCGG+AGG 0.598370 8.3:-60236206 None:intergenic
GGAATGTCTTTAGAGAGAGC+CGG 0.604854 8.3:-60236124 None:intergenic
AGAATCAACTGCATCGTCGT+AGG 0.605454 8.3:-60236377 None:intergenic
AATGATGGGGAGTTTGGCAG+CGG 0.606209 8.3:-60236209 None:intergenic
AAGTGTTACATAGAGGATTG+AGG 0.608235 8.3:-60236979 None:intergenic
AACATTTATCAAAGTTCACA+TGG 0.611493 8.3:-60236459 None:intergenic
ATCCCAAGCTCAAAATCCAA+CGG 0.621724 8.3:+60236414 MS.gene37503:CDS
TACCAGCAGGTGATCTCATG+TGG 0.621833 8.3:+60236656 MS.gene37503:CDS
CGGGAGGAAGAGACGAATGG+AGG 0.622270 8.3:-60236167 None:intergenic
TCCCACAAAGTGTTACATAG+AGG 0.623750 8.3:-60236986 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.3:+60236780 MS.gene37503:CDS
TGACTCCCGTTAAGATTCGA+GGG 0.625353 8.3:+60236551 MS.gene37503:CDS
ATCATTCTCTACTTCCATGG+TGG 0.627271 8.3:+60236226 MS.gene37503:CDS
ATAATCAACAGAGGCAACAA+TGG 0.631313 8.3:-60236323 None:intergenic
TGGGCAGCTAATGTGGAGCA+GGG 0.644565 8.3:-60236292 None:intergenic
GACCACATGAGATCACCTGC+TGG 0.646204 8.3:-60236658 None:intergenic
TTGTTGGATTGCAATACTCG+TGG 0.646636 8.3:-60236711 None:intergenic
TTTGTGGGATCGAAGGATGG+TGG 0.649200 8.3:-60236088 None:intergenic
TTGGCAGCGGAGGAAGACGG+TGG 0.649761 8.3:-60236196 None:intergenic
TTGATGGGAGACAGTGCCGG+AGG 0.655276 8.3:+60236484 MS.gene37503:CDS
TAATTCCAAACAAAGCACAA+TGG 0.666343 8.3:+60235991 MS.gene37503:CDS
GGGATGGTGGAAGATAAGGG+AGG 0.667136 8.3:-60236272 None:intergenic
AGAGGATGAAACCACCACCA+TGG 0.674528 8.3:-60236240 None:intergenic
TAGCCATTAACAAAGCACCT+TGG 0.684803 8.3:-60236772 None:intergenic
TTTGCCCTCAGGCAAACACA+GGG 0.688501 8.3:-60236680 None:intergenic
CGAGAGACGATAATCAACAG+AGG 0.723701 8.3:-60236332 None:intergenic
TATACGGTGAAAAGATCGGA+CGG 0.731375 8.3:+60236746 MS.gene37503:CDS
CATCGTCGTAGGCTGCTGGG+AGG 0.733855 8.3:-60236366 None:intergenic
CATGGAAGTAGAGAATGATG+GGG 0.743084 8.3:-60236222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATAAATGTTTCTTGAT+GGG + chr8.3:60236469-60236488 MS.gene37503:CDS 20.0%
!!! ATGAAATATCCATTTTTTAG+TGG + chr8.3:60236580-60236599 MS.gene37503:CDS 20.0%
! AACATTTATCAAAGTTCACA+TGG - chr8.3:60236462-60236481 None:intergenic 25.0%
! CTTTGATAAATGTTTCTTGA+TGG + chr8.3:60236468-60236487 MS.gene37503:CDS 25.0%
! TGAAATCTTTGATCATTCTA+AGG + chr8.3:60236900-60236919 MS.gene37503:CDS 25.0%
!!! TTGATTTTGAGGAATTCATA+GGG - chr8.3:60236019-60236038 None:intergenic 25.0%
!!! TTTGATTTTGAGGAATTCAT+AGG - chr8.3:60236020-60236039 None:intergenic 25.0%
AAAATCAAACTAAACCCTGA+TGG + chr8.3:60236031-60236050 MS.gene37503:CDS 30.0%
AGGTAATATAGCCTATTTCA+CGG + chr8.3:60236504-60236523 MS.gene37503:CDS 30.0%
TAATTCCAAACAAAGCACAA+TGG + chr8.3:60235991-60236010 MS.gene37503:CDS 30.0%
! TGTTTGGAATTAGGTGAATT+TGG - chr8.3:60235983-60236002 None:intergenic 30.0%
!! ATTGTGCTTTGTTTGGAATT+AGG - chr8.3:60235992-60236011 None:intergenic 30.0%
ACAACTTTGGATCACGTATA+CGG + chr8.3:60236730-60236749 MS.gene37503:CDS 35.0%
ATAATCAACAGAGGCAACAA+TGG - chr8.3:60236326-60236345 None:intergenic 35.0%
CTCTGAACTCCACTAAAAAA+TGG - chr8.3:60236592-60236611 None:intergenic 35.0%
GAAATAGGCTATATTACCTC+CGG - chr8.3:60236503-60236522 None:intergenic 35.0%
GGTAATATAGCCTATTTCAC+GGG + chr8.3:60236505-60236524 MS.gene37503:CDS 35.0%
GTATTGCAATCCAACAACTT+TGG + chr8.3:60236717-60236736 MS.gene37503:CDS 35.0%
TATACGTGATCCAAAGTTGT+TGG - chr8.3:60236730-60236749 None:intergenic 35.0%
TATGATCCCTCGAATCTTAA+CGG - chr8.3:60236560-60236579 None:intergenic 35.0%
TTCTTGTTAGTGAACCATCA+GGG - chr8.3:60236048-60236067 None:intergenic 35.0%
TTTCTTGTTAGTGAACCATC+AGG - chr8.3:60236049-60236068 None:intergenic 35.0%
!!! CAGGGTTTAGTTTGATTTTG+AGG - chr8.3:60236030-60236049 None:intergenic 35.0%
!!! CATTTTTTAGTGGAGTTCAG+AGG + chr8.3:60236590-60236609 MS.gene37503:CDS 35.0%
ACCATGGAAGTAGAGAATGA+TGG - chr8.3:60236227-60236246 None:intergenic 40.0%
ATACCCATCCTCATCAAAAC+AGG - chr8.3:60236872-60236891 None:intergenic 40.0%
ATCATTCTCTACTTCCATGG+TGG + chr8.3:60236226-60236245 MS.gene37503:CDS 40.0%
ATCCCAAGCTCAAAATCCAA+CGG + chr8.3:60236414-60236433 MS.gene37503:CDS 40.0%
ATCGTTAACCAAACGAAGCT+CGG - chr8.3:60236623-60236642 None:intergenic 40.0%
ATGATCCCTCGAATCTTAAC+GGG - chr8.3:60236559-60236578 None:intergenic 40.0%
CACGTATACGGTGAAAAGAT+CGG + chr8.3:60236742-60236761 MS.gene37503:CDS 40.0%
CATGGAAGTAGAGAATGATG+GGG - chr8.3:60236225-60236244 None:intergenic 40.0%
CCATGGAAGTAGAGAATGAT+GGG - chr8.3:60236226-60236245 None:intergenic 40.0%
TATACGGTGAAAAGATCGGA+CGG + chr8.3:60236746-60236765 MS.gene37503:CDS 40.0%
TTGTTGGATTGCAATACTCG+TGG - chr8.3:60236714-60236733 None:intergenic 40.0%
! AAAGGAGCTAGCGAAGATTT+TGG + chr8.3:60236822-60236841 MS.gene37503:CDS 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.3:60236775-60236794 MS.gene37503:CDS 40.0%
! ATGCAGTTGATTCTCTTCTC+TGG + chr8.3:60236386-60236405 MS.gene37503:CDS 40.0%
! ATTCCGTTGGATTTTGAGCT+TGG - chr8.3:60236420-60236439 None:intergenic 40.0%
! TAGCCATTAACAAAGCACCT+TGG - chr8.3:60236775-60236794 None:intergenic 40.0%
! TCCATTGGTGGATAAGCAAA+AGG + chr8.3:60236804-60236823 MS.gene37503:CDS 40.0%
! TCCTTTTGCTTATCCACCAA+TGG - chr8.3:60236808-60236827 None:intergenic 40.0%
! TTCCGTTGGATTTTGAGCTT+GGG - chr8.3:60236419-60236438 None:intergenic 40.0%
! TTGCCAAGGTGCTTTGTTAA+TGG + chr8.3:60236769-60236788 MS.gene37503:CDS 40.0%
!!! AGTCCTGTTTTGATGAGGAT+GGG + chr8.3:60236866-60236885 MS.gene37503:CDS 40.0%
AGAATCAACTGCATCGTCGT+AGG - chr8.3:60236380-60236399 None:intergenic 45.0%
AGGAATTTGGGCAGCTAATG+TGG - chr8.3:60236302-60236321 None:intergenic 45.0%
AGGCAACAATGGCAGGAATT+TGG - chr8.3:60236315-60236334 None:intergenic 45.0%
ATCCAACGGAATCTGATCCA+TGG + chr8.3:60236428-60236447 MS.gene37503:CDS 45.0%
ATCCATGGATCAGATTCCGT+TGG - chr8.3:60236433-60236452 None:intergenic 45.0%
ATGAGATCACCTGCTGGTAA+TGG - chr8.3:60236655-60236674 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.3:60236229-60236248 MS.gene37503:CDS 45.0%
CCCATCATTCTCTACTTCCA+TGG + chr8.3:60236223-60236242 MS.gene37503:CDS 45.0%
CGAGAGACGATAATCAACAG+AGG - chr8.3:60236335-60236354 None:intergenic 45.0%
CGTATATTGCCATTACCAGC+AGG + chr8.3:60236643-60236662 MS.gene37503:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.3:60236780-60236799 MS.gene37503:CDS 45.0%
GAATTTGTGGGATCGAAGGA+TGG - chr8.3:60236094-60236113 None:intergenic 45.0%
GGCAACAATGGCAGGAATTT+GGG - chr8.3:60236314-60236333 None:intergenic 45.0%
TCTTAACGGGAGTCAGATCA+AGG - chr8.3:60236546-60236565 None:intergenic 45.0%
TGACTCCCGTTAAGATTCGA+GGG + chr8.3:60236551-60236570 MS.gene37503:CDS 45.0%
TTCACATGGTCTCTGATCCA+TGG - chr8.3:60236448-60236467 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.3:60236779-60236798 MS.gene37503:CDS 45.0%
! GGAATGTCTTTAGAGAGAGC+CGG - chr8.3:60236127-60236146 None:intergenic 45.0%
! GGGATCCATTGTGCTTTGTT+TGG - chr8.3:60235999-60236018 None:intergenic 45.0%
! GTAGAGAATGATGGGGAGTT+TGG - chr8.3:60236218-60236237 None:intergenic 45.0%
! GTTTTCGCAGCGGTGTTTAA+GGG - chr8.3:60236148-60236167 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.3:60236778-60236797 MS.gene37503:CDS 45.0%
!!! GAGTCCTGTTTTGATGAGGA+TGG + chr8.3:60236865-60236884 MS.gene37503:CDS 45.0%
!!! TGTGGAGTCCTGTTTTGATG+AGG + chr8.3:60236861-60236880 MS.gene37503:CDS 45.0%
AAAAGATCGGACGGTTGCCA+AGG + chr8.3:60236755-60236774 MS.gene37503:CDS 50.0%
AGAGGATGAAACCACCACCA+TGG - chr8.3:60236243-60236262 None:intergenic 50.0%
AGCACGTAGACCCGTGAAAT+AGG - chr8.3:60236518-60236537 None:intergenic 50.0%
CTGACTCCCGTTAAGATTCG+AGG + chr8.3:60236550-60236569 MS.gene37503:CDS 50.0%
GACTGAATCCGAGCTTCGTT+TGG + chr8.3:60236612-60236631 MS.gene37503:CDS 50.0%
GGTGGAAGATAAGGGAGGAA+GGG - chr8.3:60236270-60236289 None:intergenic 50.0%
TACCAGCAGGTGATCTCATG+TGG + chr8.3:60236656-60236675 MS.gene37503:CDS 50.0%
TCAACAGAGGCAACAATGGC+AGG - chr8.3:60236322-60236341 None:intergenic 50.0%
TGGCGAATTTGTGGGATCGA+AGG - chr8.3:60236098-60236117 None:intergenic 50.0%
TGGTGGAAGATAAGGGAGGA+AGG - chr8.3:60236271-60236290 None:intergenic 50.0%
TTCTTGATGGGAGACAGTGC+CGG + chr8.3:60236481-60236500 MS.gene37503:CDS 50.0%
TTTGCCCTCAGGCAAACACA+GGG - chr8.3:60236683-60236702 None:intergenic 50.0%
TTTGTGGGATCGAAGGATGG+TGG - chr8.3:60236091-60236110 None:intergenic 50.0%
! AATGATGGGGAGTTTGGCAG+CGG - chr8.3:60236212-60236231 None:intergenic 50.0%
! ACGAATGGAGGTTTTCGCAG+CGG - chr8.3:60236158-60236177 None:intergenic 50.0%
! GGTTTTCGCAGCGGTGTTTA+AGG - chr8.3:60236149-60236168 None:intergenic 50.0%
! TCTTTAGAGAGAGCCGGTTG+CGG - chr8.3:60236121-60236140 None:intergenic 50.0%
!! AGCAGGGATGGTGGAAGATA+AGG - chr8.3:60236279-60236298 None:intergenic 50.0%
!! GCAGGGATGGTGGAAGATAA+GGG - chr8.3:60236278-60236297 None:intergenic 50.0%
!!! CGAAGATTTTGGCTGCACAC+GGG + chr8.3:60236833-60236852 MS.gene37503:CDS 50.0%
!!! GAAGATTTTGGCTGCACACG+GGG + chr8.3:60236834-60236853 MS.gene37503:CDS 50.0%
!!! GCGAAGATTTTGGCTGCACA+CGG + chr8.3:60236832-60236851 MS.gene37503:CDS 50.0%
AGTTTGGCAGCGGAGGAAGA+CGG - chr8.3:60236202-60236221 None:intergenic 55.0%
CACAAATTCGCCACCGCAAC+CGG + chr8.3:60236105-60236124 MS.gene37503:CDS 55.0%
CAGCTAATGTGGAGCAGGGA+TGG - chr8.3:60236291-60236310 None:intergenic 55.0%
CTAATGTGGAGCAGGGATGG+TGG - chr8.3:60236288-60236307 None:intergenic 55.0%
CTTTGCCCTCAGGCAAACAC+AGG - chr8.3:60236684-60236703 None:intergenic 55.0%
GACCACATGAGATCACCTGC+TGG - chr8.3:60236661-60236680 None:intergenic 55.0%
GGAAGATAAGGGAGGAAGGG+TGG - chr8.3:60236267-60236286 None:intergenic 55.0%
GGTTGCGGTGGCGAATTTGT+GGG - chr8.3:60236106-60236125 None:intergenic 55.0%
GTTCGGGAGGAAGAGACGAA+TGG - chr8.3:60236173-60236192 None:intergenic 55.0%
TAAGGGAGGAAGGGTGGTAG+AGG - chr8.3:60236261-60236280 None:intergenic 55.0%
TGGGCAGCTAATGTGGAGCA+GGG - chr8.3:60236295-60236314 None:intergenic 55.0%
TGGTCCCTGTGTTTGCCTGA+GGG + chr8.3:60236676-60236695 MS.gene37503:CDS 55.0%
TGGTCTCTGTCTTTGCCCTC+AGG - chr8.3:60236694-60236713 None:intergenic 55.0%
TTGGGCAGCTAATGTGGAGC+AGG - chr8.3:60236296-60236315 None:intergenic 55.0%
!! GGGATGGTGGAAGATAAGGG+AGG - chr8.3:60236275-60236294 None:intergenic 55.0%
ACTGCATCGTCGTAGGCTGC+TGG - chr8.3:60236373-60236392 None:intergenic 60.0%
AGGAAGACGGTGGAGGGTTC+GGG - chr8.3:60236189-60236208 None:intergenic 60.0%
CGGGAGGAAGAGACGAATGG+AGG - chr8.3:60236170-60236189 None:intergenic 60.0%
CGGTTGCGGTGGCGAATTTG+TGG - chr8.3:60236107-60236126 None:intergenic 60.0%
CTACGGTGGGGATCCATTGG+TGG + chr8.3:60236792-60236811 MS.gene37503:CDS 60.0%
CTGCATCGTCGTAGGCTGCT+GGG - chr8.3:60236372-60236391 None:intergenic 60.0%
GAGGAAGACGGTGGAGGGTT+CGG - chr8.3:60236190-60236209 None:intergenic 60.0%
GTGGTCCCTGTGTTTGCCTG+AGG + chr8.3:60236675-60236694 MS.gene37503:CDS 60.0%
TGGCTACGGTGGGGATCCAT+TGG + chr8.3:60236789-60236808 MS.gene37503:CDS 60.0%
TTAGAGAGAGCCGGTTGCGG+TGG - chr8.3:60236118-60236137 None:intergenic 60.0%
! ATCGAAGGATGGTGGCACGG+TGG - chr8.3:60236083-60236102 None:intergenic 60.0%
! GGGATCGAAGGATGGTGGCA+CGG - chr8.3:60236086-60236105 None:intergenic 60.0%
! TCGAAGGATGGTGGCACGGT+GGG - chr8.3:60236082-60236101 None:intergenic 60.0%
! TTGATGGGAGACAGTGCCGG+AGG + chr8.3:60236484-60236503 MS.gene37503:CDS 60.0%
AAGACGGTGGAGGGTTCGGG+AGG - chr8.3:60236186-60236205 None:intergenic 65.0%
CAGCGGAGGAAGACGGTGGA+GGG - chr8.3:60236195-60236214 None:intergenic 65.0%
CATCGTCGTAGGCTGCTGGG+AGG - chr8.3:60236369-60236388 None:intergenic 65.0%
GATGGGGAGTTTGGCAGCGG+AGG - chr8.3:60236209-60236228 None:intergenic 65.0%
TTGGCAGCGGAGGAAGACGG+TGG - chr8.3:60236199-60236218 None:intergenic 65.0%
! CGAAGGATGGTGGCACGGTG+GGG - chr8.3:60236081-60236100 None:intergenic 65.0%
GCAGCGGAGGAAGACGGTGG+AGG - chr8.3:60236196-60236215 None:intergenic 70.0%
GCTGCTGGGAGGCGATGCTC+AGG - chr8.3:60236358-60236377 None:intergenic 70.0%
GGCTGCACACGGGGTGCATG+TGG + chr8.3:60236843-60236862 MS.gene37503:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 60235971 60236996 60235971 ID=MS.gene37503
chr8.3 mRNA 60235971 60236996 60235971 ID=MS.gene37503.t1;Parent=MS.gene37503
chr8.3 exon 60235971 60236996 60235971 ID=MS.gene37503.t1.exon1;Parent=MS.gene37503.t1
chr8.3 CDS 60235971 60236996 60235971 ID=cds.MS.gene37503.t1;Parent=MS.gene37503.t1
Gene Sequence

>MS.gene37503

ATGGCAGAACCAAATTCACCTAATTCCAAACAAAGCACAATGGATCCCTATGAATTCCTCAAAATCAAACTAAACCCTGATGGTTCACTAACAAGAAACTACATTGTCCCCACCGTGCCACCATCCTTCGATCCCACAAATTCGCCACCGCAACCGGCTCTCTCTAAAGACATTCCCTTAAACACCGCTGCGAAAACCTCCATTCGTCTCTTCCTCCCGAACCCTCCACCGTCTTCCTCCGCTGCCAAACTCCCCATCATTCTCTACTTCCATGGTGGTGGTTTCATCCTCTACCACCCTTCCTCCCTTATCTTCCACCATCCCTGCTCCACATTAGCTGCCCAAATTCCTGCCATTGTTGCCTCTGTTGATTATCGTCTCTCGCCTGAGCATCGCCTCCCAGCAGCCTACGACGATGCAGTTGATTCTCTTCTCTGGCTCAAATCCCAAGCTCAAAATCCAACGGAATCTGATCCATGGATCAGAGACCATGTGAACTTTGATAAATGTTTCTTGATGGGAGACAGTGCCGGAGGTAATATAGCCTATTTCACGGGTCTACGTGCTCTCGACCTTGATCTGACTCCCGTTAAGATTCGAGGGATCATAATGAAATATCCATTTTTTAGTGGAGTTCAGAGGACTGAATCCGAGCTTCGTTTGGTTAACGATCGTATATTGCCATTACCAGCAGGTGATCTCATGTGGTCCCTGTGTTTGCCTGAGGGCAAAGACAGAGACCACGAGTATTGCAATCCAACAACTTTGGATCACGTATACGGTGAAAAGATCGGACGGTTGCCAAGGTGCTTTGTTAATGGCTACGGTGGGGATCCATTGGTGGATAAGCAAAAGGAGCTAGCGAAGATTTTGGCTGCACACGGGGTGCATGTGGAGTCCTGTTTTGATGAGGATGGGTATCATGCTGTTGAAATCTTTGATCATTCTAAGGCACAAGTTTTGCTTGATAATGTTAAGAAGTTTATACTCTCAGCTGTTTCTGTTGCTCCTCAATCCTCTATGTAA
Protein sequence

>MS.gene37503.t1

MAEPNSPNSKQSTMDPYEFLKIKLNPDGSLTRNYIVPTVPPSFDPTNSPPQPALSKDIPLNTAAKTSIRLFLPNPPPSSSAAKLPIILYFHGGGFILYHPSSLIFHHPCSTLAAQIPAIVASVDYRLSPEHRLPAAYDDAVDSLLWLKSQAQNPTESDPWIRDHVNFDKCFLMGDSAGGNIAYFTGLRALDLDLTPVKIRGIIMKYPFFSGVQRTESELRLVNDRILPLPAGDLMWSLCLPEGKDRDHEYCNPTTLDHVYGEKIGRLPRCFVNGYGGDPLVDKQKELAKILAAHGVHVESCFDEDGYHAVEIFDHSKAQVLLDNVKKFILSAVSVAPQSSM