AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37504

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37504.t1 MTR_8g035520 95.745 329 14 0 1 329 1 329 0.0 639
MS.gene37504.t1 MTR_8g035540 77.044 318 69 1 13 326 1 318 6.44e-180 500
MS.gene37504.t1 MTR_6g464510 50.760 329 148 6 3 325 7 327 3.40e-111 326
MS.gene37504.t1 MTR_6g464280 50.779 321 142 5 14 325 12 325 2.17e-105 311
MS.gene37504.t1 MTR_6g464320 47.546 326 155 5 12 328 11 329 1.56e-97 291
MS.gene37504.t1 MTR_0007s0520 46.988 332 155 6 3 326 8 326 6.94e-97 290
MS.gene37504.t1 MTR_1g102160 45.679 324 159 7 13 326 11 327 2.12e-92 278
MS.gene37504.t1 MTR_1g102170 45.938 320 152 6 10 320 27 334 1.33e-91 276
MS.gene37504.t1 MTR_6g464120 46.732 306 155 4 14 316 17 317 5.96e-90 278
MS.gene37504.t1 MTR_8g035500 41.824 318 179 4 11 324 2 317 1.15e-88 268
MS.gene37504.t1 MTR_1g111280 36.278 317 183 7 21 325 34 343 1.19e-56 187
MS.gene37504.t1 MTR_7g406880 34.877 324 190 7 21 325 29 350 1.11e-51 174
MS.gene37504.t1 MTR_6g065120 35.667 300 170 7 40 327 50 338 4.95e-50 170
MS.gene37504.t1 MTR_6g065430 36.644 292 164 6 40 324 50 327 2.93e-49 167
MS.gene37504.t1 MTR_7g107040 34.395 314 194 7 21 329 15 321 8.72e-49 166
MS.gene37504.t1 MTR_6g065370 34.448 299 174 7 40 327 49 336 2.27e-48 166
MS.gene37504.t1 MTR_0007s0480 49.419 172 78 3 164 327 3 173 1.27e-47 158
MS.gene37504.t1 MTR_6g065270 34.641 306 168 7 40 327 47 338 1.50e-47 163
MS.gene37504.t1 MTR_6g065110 33.220 295 177 6 42 326 52 336 9.73e-47 161
MS.gene37504.t1 MTR_6g065400 33.779 299 176 7 40 327 49 336 1.25e-46 161
MS.gene37504.t1 MTR_4g050140 34.426 305 191 6 26 326 18 317 5.12e-46 159
MS.gene37504.t1 MTR_1g012430 35.507 276 162 9 17 290 9 270 5.51e-45 156
MS.gene37504.t1 MTR_4g086510 34.603 315 184 9 21 325 16 318 6.98e-44 153
MS.gene37504.t1 MTR_3g101420 32.588 313 193 9 21 326 15 316 2.13e-43 152
MS.gene37504.t1 MTR_7g056207 33.758 314 188 8 21 325 48 350 7.32e-43 151
MS.gene37504.t1 MTR_4g086540 32.566 304 169 8 26 325 31 302 1.77e-41 147
MS.gene37504.t1 MTR_1g082210 30.745 322 187 7 25 326 37 342 1.02e-39 143
MS.gene37504.t1 MTR_4g086480 32.372 312 194 10 21 326 20 320 4.77e-39 140
MS.gene37504.t1 MTR_6g065340 32.776 299 163 9 40 327 60 331 8.62e-38 137
MS.gene37504.t1 MTR_5g005920 31.737 334 207 12 1 324 1 323 3.72e-37 136
MS.gene37504.t1 MTR_1g089310 34.043 235 134 5 72 301 114 332 1.89e-34 129
MS.gene37504.t1 MTR_1g089310 33.898 236 133 6 72 301 98 316 2.34e-34 129
MS.gene37504.t1 MTR_3g012440 32.117 274 170 6 64 326 74 342 7.40e-34 127
MS.gene37504.t1 MTR_4g086470 33.788 293 177 10 38 324 36 317 1.61e-33 126
MS.gene37504.t1 MTR_7g093950 29.355 310 182 8 38 325 53 347 2.45e-33 126
MS.gene37504.t1 MTR_3g450680 32.087 321 188 11 21 324 24 331 6.36e-31 119
MS.gene37504.t1 MTR_5g005850 35.714 224 126 7 1 213 1 217 4.66e-30 117
MS.gene37504.t1 MTR_1g105020 30.351 313 202 9 21 325 16 320 2.32e-29 115
MS.gene37504.t1 MTR_5g005900 29.796 245 151 8 4 238 3 236 3.73e-28 112
MS.gene37504.t1 MTR_8g040860 30.408 319 198 11 21 328 24 329 2.12e-27 109
MS.gene37504.t1 MTR_1g104930 40.642 187 102 5 21 204 20 200 8.20e-27 108
MS.gene37504.t1 MTR_7g051020 34.277 318 183 14 21 324 20 325 3.20e-25 103
MS.gene37504.t1 MTR_6g022710 28.819 288 161 8 78 325 159 442 5.33e-25 105
MS.gene37504.t1 MTR_1g104933 40.764 157 87 3 50 204 46 198 1.28e-21 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37504.t1 AT2G45600 54.062 320 135 4 14 329 9 320 2.60e-120 349
MS.gene37504.t1 AT2G45610 45.897 329 169 4 1 325 1 324 4.92e-102 303
MS.gene37504.t1 AT5G62180 44.083 338 166 9 1 327 1 326 7.24e-87 264
MS.gene37504.t1 AT5G16080 37.201 293 173 5 21 309 36 321 4.57e-52 175
MS.gene37504.t1 AT1G68620 38.971 272 154 7 13 282 24 285 1.49e-51 174
MS.gene37504.t1 AT5G06570 36.735 294 171 8 21 304 33 321 2.69e-40 144
MS.gene37504.t1 AT5G06570 36.735 294 171 8 21 304 33 321 2.69e-40 144
MS.gene37504.t1 AT5G06570 34.494 316 193 9 21 327 18 328 3.03e-40 144
MS.gene37504.t1 AT5G06570 34.494 316 193 9 21 327 18 328 3.03e-40 144
MS.gene37504.t1 AT5G23530 30.744 309 189 9 25 324 34 326 2.74e-38 139
MS.gene37504.t1 AT1G47480 31.949 313 189 9 23 328 18 313 3.38e-37 135
MS.gene37504.t1 AT3G63010 30.909 330 181 11 25 328 37 345 6.85e-37 135
MS.gene37504.t1 AT5G27320 30.897 301 169 8 25 303 37 320 8.58e-36 132
MS.gene37504.t1 AT3G48690 33.482 224 141 4 21 240 13 232 6.51e-35 130
MS.gene37504.t1 AT1G49640 35.789 190 113 3 21 208 14 196 6.22e-34 127
MS.gene37504.t1 AT3G48700 34.222 225 130 5 27 240 19 236 3.88e-33 125
MS.gene37504.t1 AT3G05120 30.584 291 174 7 25 299 37 315 1.32e-31 121
MS.gene37504.t1 AT1G49660 35.233 193 122 3 17 207 8 199 4.54e-30 117
MS.gene37504.t1 AT1G49650 34.225 187 120 3 21 206 69 253 7.58e-30 117
MS.gene37504.t1 AT1G19190 33.871 186 119 3 22 204 14 198 1.68e-29 115
MS.gene37504.t1 AT2G03550 36.066 183 113 2 22 204 14 192 5.30e-29 114
MS.gene37504.t1 AT5G14310 30.822 292 155 8 78 325 150 438 1.80e-27 112
MS.gene37504.t1 AT3G27320 27.660 282 125 5 48 250 58 339 5.30e-24 102
MS.gene37504.t1 AT3G27320 30.918 207 109 3 78 250 165 371 9.67e-24 101

Find 104 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTACAACAATCGGTATT+TGG 0.173341 8.3:-60252810 None:intergenic
CTGCCGAGGTGCTTTGTTAA+TGG 0.259867 8.3:+60253267 MS.gene37504:CDS
AAAGGAGCTAGTGAAGATTT+TGG 0.262688 8.3:+60253320 MS.gene37504:CDS
GAAGAAGGCGGTGGATGGTT+TGG 0.306713 8.3:-60252685 None:intergenic
CTTGATTTCGAGGAATTCAT+AGG 0.332300 8.3:-60252527 None:intergenic
CATAAGATCACTTGCTGATA+AGG 0.336937 8.3:-60253151 None:intergenic
AAGAAGGCGGTGGATGGTTT+GGG 0.338643 8.3:-60252684 None:intergenic
TTAGATAGAACAGTTTGATT+AGG 0.340415 8.3:-60252613 None:intergenic
GGCTACAACAATCGGTATTT+GGG 0.352791 8.3:-60252809 None:intergenic
AGGTGTTTGTGGCTGTGTTT+AGG 0.375709 8.3:-60252645 None:intergenic
AAAATTTCGGATGTGATATA+CGG 0.376674 8.3:+60253228 MS.gene37504:CDS
CTTTGATAACTGCTTCTTGA+TGG 0.402538 8.3:+60252966 MS.gene37504:CDS
ATAAGCCCTTGGATCTTAAG+AGG 0.421207 8.3:-60253054 None:intergenic
TCGGAGGATGGTGGCACGGT+GGG 0.424218 8.3:-60252589 None:intergenic
CCTCTCATTCTCTACTTCCA+TGG 0.441515 8.3:+60252721 MS.gene37504:CDS
GGAAGGAGATGGAGGAAGGA+TGG 0.441614 8.3:-60252762 None:intergenic
ATTAATGCTTGTGCCTTAGC+AGG 0.443498 8.3:-60253411 None:intergenic
TGGCTACGGTGGGGATCCCT+TGG 0.444444 8.3:+60253287 MS.gene37504:CDS
CAGGGTTGAGCTTGATTTCG+AGG 0.446420 8.3:-60252537 None:intergenic
GGAAGCTTAGCCGCGGAAGA+AGG 0.449751 8.3:-60252700 None:intergenic
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.3:+60252727 MS.gene37504:CDS
CGTTAAGAAATTTATTTCCT+CGG 0.460385 8.3:+60253440 MS.gene37504:CDS
TTTCTTGTGAGGGAACCGTC+AGG 0.462902 8.3:-60252556 None:intergenic
TATCAGCAAGTGATCTTATG+TGG 0.466303 8.3:+60253154 MS.gene37504:CDS
ATAAGATCACTTGCTGATAA+GGG 0.469063 8.3:-60253150 None:intergenic
CTACGGTGGGGATCCCTTGG+TGG 0.471238 8.3:+60253290 MS.gene37504:CDS
GTGGGGATCCCTTGGTGGAT+AGG 0.478308 8.3:+60253295 MS.gene37504:CDS
GCAGCAGGGAGACGGTGCTC+TGG 0.479871 8.3:-60252853 None:intergenic
ATCGGAGGATGGTGGCACGG+TGG 0.483957 8.3:-60252590 None:intergenic
CGGAGGATGGTGGCACGGTG+GGG 0.494269 8.3:-60252588 None:intergenic
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.3:+60253273 MS.gene37504:CDS
CGGTATTTGGGCGGCGAAGG+TGG 0.500026 8.3:-60252797 None:intergenic
TTTGCCTGAGGGCAAAGATC+GGG 0.502336 8.3:+60253185 MS.gene37504:CDS
GAGCATTCATTATAAGCCCT+TGG 0.503256 8.3:-60253065 None:intergenic
ACAGCGTCATCATAGGCAGC+AGG 0.503505 8.3:-60252868 None:intergenic
AATCGGTATTTGGGCGGCGA+AGG 0.504867 8.3:-60252800 None:intergenic
CTCTCTCCTCTTAAGATCCA+AGG 0.508284 8.3:+60253048 MS.gene37504:CDS
TTCTTGATGGGAAGTAGTGC+AGG 0.508384 8.3:+60252979 MS.gene37504:CDS
GATGCGAATGGAGGTGTTTG+TGG 0.509539 8.3:-60252656 None:intergenic
TGAGGATGGGTTTCATGCTG+TGG 0.514157 8.3:+60253377 MS.gene37504:CDS
TCCCTTGGTGGATAGGCAAA+AGG 0.515897 8.3:+60253302 MS.gene37504:CDS
TGGTGGAAGGAGATGGAGGA+AGG 0.515934 8.3:-60252766 None:intergenic
TCAACTGAGGCTACAACAAT+CGG 0.516064 8.3:-60252817 None:intergenic
GAAGCTCGGATTCTGTCCTC+TGG 0.518185 8.3:-60253104 None:intergenic
ATCCAAGTGTCTCTGATCCA+TGG 0.519484 8.3:+60252926 MS.gene37504:CDS
TGAATCAACAGCGTCATCAT+AGG 0.525186 8.3:-60252875 None:intergenic
TTTGATAACTGCTTCTTGAT+GGG 0.528311 8.3:+60252967 MS.gene37504:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.528480 8.3:+60253276 MS.gene37504:CDS
TGATCCCGATCTTTGCCCTC+AGG 0.528666 8.3:-60253189 None:intergenic
GACGTTGTCATTTCTTGTGA+GGG 0.529362 8.3:-60252566 None:intergenic
CTTTGCCTGAGGGCAAAGAT+CGG 0.530032 8.3:+60253184 MS.gene37504:CDS
CCGCGGAAGAAGGCGGTGGA+TGG 0.531700 8.3:-60252690 None:intergenic
AGATGGAGGAAGGATGGTAG+CGG 0.533188 8.3:-60252756 None:intergenic
ACAACATTGGTGGAAGGAGA+TGG 0.537016 8.3:-60252773 None:intergenic
TCCACGTTGTCTCTAATCCA+TGG 0.538847 8.3:-60252943 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.3:+60253277 MS.gene37504:CDS
CATCATAGGCAGCAGGGAGA+CGG 0.539880 8.3:-60252861 None:intergenic
TAGAACAGTTTGATTAGGAT+CGG 0.541841 8.3:-60252608 None:intergenic
GGACGTTGTCATTTCTTGTG+AGG 0.542116 8.3:-60252567 None:intergenic
GTGATATACGGTGAGAAGAT+CGG 0.544369 8.3:+60253240 MS.gene37504:CDS
ACGCTGTTGATTCACTGCTC+TGG 0.544781 8.3:+60252884 MS.gene37504:CDS
CGGCGAAGGTGGAACAACAT+TGG 0.547001 8.3:-60252786 None:intergenic
GACGGTGCTCTGGCGTGAGA+CGG 0.553527 8.3:-60252843 None:intergenic
TTGATTTCGAGGAATTCATA+GGG 0.554513 8.3:-60252526 None:intergenic
GTGGGCTCTATCTTTGCCTG+AGG 0.562373 8.3:+60253173 MS.gene37504:CDS
TTCTTGTGAGGGAACCGTCA+GGG 0.564683 8.3:-60252555 None:intergenic
CCATGGAAGTAGAGAATGAG+AGG 0.566521 8.3:-60252721 None:intergenic
CGAAGGTGGAACAACATTGG+TGG 0.568199 8.3:-60252783 None:intergenic
AAGGCGGTGGATGGTTTGGG+AGG 0.574865 8.3:-60252681 None:intergenic
TGGGCTCTATCTTTGCCTGA+GGG 0.574915 8.3:+60253174 MS.gene37504:CDS
GGAGGCACGTGGGGTGCACG+TGG 0.576950 8.3:+60253341 MS.gene37504:CDS
ATCGTTAATGAAACGAAGCT+CGG 0.583980 8.3:-60253118 None:intergenic
ATCCATGGATCAGAGACACT+TGG 0.585274 8.3:-60252928 None:intergenic
AGAAGATCGGACAGCTGCCG+AGG 0.589388 8.3:+60253253 MS.gene37504:CDS
GTTTGGGAGGAAGATGCGAA+TGG 0.591093 8.3:-60252668 None:intergenic
GGAACTCTTTGATCCTGCTA+AGG 0.595599 8.3:+60253398 MS.gene37504:CDS
TGGGAGGAAGATGCGAATGG+AGG 0.596067 8.3:-60252665 None:intergenic
ATCAGCAAGTGATCTTATGT+GGG 0.600680 8.3:+60253155 MS.gene37504:CDS
TCTCTCCTCTTAAGATCCAA+GGG 0.605883 8.3:+60253049 MS.gene37504:CDS
AGGATCGGAGGATGGTGGCA+CGG 0.606730 8.3:-60252593 None:intergenic
AACAGTTTGATTAGGATCGG+AGG 0.606944 8.3:-60252605 None:intergenic
GAGGAATTCATAGGGATCGA+TGG 0.607240 8.3:-60252518 None:intergenic
CTCATTCTCTACTTCCATGG+TGG 0.607938 8.3:+60252724 MS.gene37504:CDS
GGTAACATAGCGTATTTCGC+AGG 0.611649 8.3:+60253003 MS.gene37504:CDS
TCTTAAGAGGAGAGAGATCG+AGG 0.616358 8.3:-60253041 None:intergenic
GTTTGATTAGGATCGGAGGA+TGG 0.616646 8.3:-60252601 None:intergenic
AGCTTAGCCGCGGAAGAAGG+CGG 0.617379 8.3:-60252697 None:intergenic
CCATCCACCGCCTTCTTCCG+CGG 0.620185 8.3:+60252690 MS.gene37504:CDS
TGATTAGGATCGGAGGATGG+TGG 0.624571 8.3:-60252598 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.3:+60253278 MS.gene37504:CDS
CAGCGTCATCATAGGCAGCA+GGG 0.627063 8.3:-60252867 None:intergenic
GGTGGAACAACATTGGTGGA+AGG 0.628176 8.3:-60252779 None:intergenic
TTAGCCGCGGAAGAAGGCGG+TGG 0.628597 8.3:-60252694 None:intergenic
GAAATCAAGCTCAACCCTGA+CGG 0.629353 8.3:+60252541 MS.gene37504:CDS
ACATTGGTGGAAGGAGATGG+AGG 0.648420 8.3:-60252770 None:intergenic
GAATTCATAGGGATCGATGG+TGG 0.658016 8.3:-60252515 None:intergenic
AGCGGAAGAAACCACCACCA+TGG 0.663365 8.3:-60252738 None:intergenic
TACAACAATCGGTATTTGGG+CGG 0.668880 8.3:-60252806 None:intergenic
TTGATGGGAAGTAGTGCAGG+TGG 0.669706 8.3:+60252982 MS.gene37504:CDS
CGTGAGACGGTGATCAACTG+AGG 0.685198 8.3:-60252830 None:intergenic
AATGAGAGGAAGCTTAGCCG+CGG 0.689712 8.3:-60252707 None:intergenic
TAGCCATTAACAAAGCACCT+CGG 0.752093 8.3:-60253270 None:intergenic
TCCATGGATTAGAGACAACG+TGG 0.752565 8.3:+60252942 MS.gene37504:CDS
AGAGGACTAAGTATCAACCG+AGG 0.780180 8.3:-60253457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTGTAATCCAAAAATTT+CGG + chr8.3:60253215-60253234 MS.gene37504:CDS 20.0%
! AAAATTTCGGATGTGATATA+CGG + chr8.3:60253228-60253247 MS.gene37504:CDS 25.0%
! CGTTAAGAAATTTATTTCCT+CGG + chr8.3:60253440-60253459 MS.gene37504:CDS 25.0%
! TTAGATAGAACAGTTTGATT+AGG - chr8.3:60252616-60252635 None:intergenic 25.0%
!! TATATCACATCCGAAATTTT+TGG - chr8.3:60253228-60253247 None:intergenic 25.0%
!!! ATAATGAATGCTCCATTTTT+TGG + chr8.3:60253075-60253094 MS.gene37504:CDS 25.0%
TAGAACAGTTTGATTAGGAT+CGG - chr8.3:60252611-60252630 None:intergenic 30.0%
TTGATTTCGAGGAATTCATA+GGG - chr8.3:60252529-60252548 None:intergenic 30.0%
! ATAAGATCACTTGCTGATAA+GGG - chr8.3:60253153-60253172 None:intergenic 30.0%
! TTTGATAACTGCTTCTTGAT+GGG + chr8.3:60252967-60252986 MS.gene37504:CDS 30.0%
ATCAGCAAGTGATCTTATGT+GGG + chr8.3:60253155-60253174 MS.gene37504:CDS 35.0%
ATCGTTAATGAAACGAAGCT+CGG - chr8.3:60253121-60253140 None:intergenic 35.0%
CTTGATTTCGAGGAATTCAT+AGG - chr8.3:60252530-60252549 None:intergenic 35.0%
TATCAGCAAGTGATCTTATG+TGG + chr8.3:60253154-60253173 MS.gene37504:CDS 35.0%
! AAAGGAGCTAGTGAAGATTT+TGG + chr8.3:60253320-60253339 MS.gene37504:CDS 35.0%
! CATAAGATCACTTGCTGATA+AGG - chr8.3:60253154-60253173 None:intergenic 35.0%
! CTTTGATAACTGCTTCTTGA+TGG + chr8.3:60252966-60252985 MS.gene37504:CDS 35.0%
!!! AGTCTGTTTTTTGTGAGGAT+GGG + chr8.3:60253364-60253383 MS.gene37504:CDS 35.0%
!!! ATGAATGCTCCATTTTTTGG+TGG + chr8.3:60253078-60253097 MS.gene37504:CDS 35.0%
!!! TGAATGCTCCATTTTTTGGT+GGG + chr8.3:60253079-60253098 MS.gene37504:CDS 35.0%
AACAGTTTGATTAGGATCGG+AGG - chr8.3:60252608-60252627 None:intergenic 40.0%
AGGCTACAACAATCGGTATT+TGG - chr8.3:60252813-60252832 None:intergenic 40.0%
ATAAGCCCTTGGATCTTAAG+AGG - chr8.3:60253057-60253076 None:intergenic 40.0%
ATTAATGCTTGTGCCTTAGC+AGG - chr8.3:60253414-60253433 None:intergenic 40.0%
GAGCATTCATTATAAGCCCT+TGG - chr8.3:60253068-60253087 None:intergenic 40.0%
GGCTACAACAATCGGTATTT+GGG - chr8.3:60252812-60252831 None:intergenic 40.0%
GTGATATACGGTGAGAAGAT+CGG + chr8.3:60253240-60253259 MS.gene37504:CDS 40.0%
TACAACAATCGGTATTTGGG+CGG - chr8.3:60252809-60252828 None:intergenic 40.0%
TCAACTGAGGCTACAACAAT+CGG - chr8.3:60252820-60252839 None:intergenic 40.0%
TCTCTCCTCTTAAGATCCAA+GGG + chr8.3:60253049-60253068 MS.gene37504:CDS 40.0%
TGAATCAACAGCGTCATCAT+AGG - chr8.3:60252878-60252897 None:intergenic 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.3:60253273-60253292 MS.gene37504:CDS 40.0%
! GACGTTGTCATTTCTTGTGA+GGG - chr8.3:60252569-60252588 None:intergenic 40.0%
! TAGCCATTAACAAAGCACCT+CGG - chr8.3:60253273-60253292 None:intergenic 40.0%
!!! ATCGATGGTGGAGTTTTGTT+TGG - chr8.3:60252506-60252525 None:intergenic 40.0%
!!! ATGGTGGAGTTTTGTTTGGA+AGG - chr8.3:60252502-60252521 None:intergenic 40.0%
!!! GAATGCTCCATTTTTTGGTG+GGG + chr8.3:60253080-60253099 MS.gene37504:CDS 40.0%
!!! GAGTCTGTTTTTTGTGAGGA+TGG + chr8.3:60253363-60253382 MS.gene37504:CDS 40.0%
ACAACATTGGTGGAAGGAGA+TGG - chr8.3:60252776-60252795 None:intergenic 45.0%
AGGTGTTTGTGGCTGTGTTT+AGG - chr8.3:60252648-60252667 None:intergenic 45.0%
ATCCAAGTGTCTCTGATCCA+TGG + chr8.3:60252926-60252945 MS.gene37504:CDS 45.0%
ATCCATGGATCAGAGACACT+TGG - chr8.3:60252931-60252950 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.3:60252727-60252746 MS.gene37504:CDS 45.0%
CCATGGAAGTAGAGAATGAG+AGG - chr8.3:60252724-60252743 None:intergenic 45.0%
CCTCTCATTCTCTACTTCCA+TGG + chr8.3:60252721-60252740 MS.gene37504:CDS 45.0%
CTCATTCTCTACTTCCATGG+TGG + chr8.3:60252724-60252743 MS.gene37504:CDS 45.0%
CTCTCTCCTCTTAAGATCCA+AGG + chr8.3:60253048-60253067 MS.gene37504:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.3:60253278-60253297 MS.gene37504:CDS 45.0%
GAAATCAAGCTCAACCCTGA+CGG + chr8.3:60252541-60252560 MS.gene37504:CDS 45.0%
GAATTCATAGGGATCGATGG+TGG - chr8.3:60252518-60252537 None:intergenic 45.0%
GAGGAATTCATAGGGATCGA+TGG - chr8.3:60252521-60252540 None:intergenic 45.0%
GGAACTCTTTGATCCTGCTA+AGG + chr8.3:60253398-60253417 MS.gene37504:CDS 45.0%
GGTAACATAGCGTATTTCGC+AGG + chr8.3:60253003-60253022 MS.gene37504:CDS 45.0%
GTTTGATTAGGATCGGAGGA+TGG - chr8.3:60252604-60252623 None:intergenic 45.0%
TCCACGTTGTCTCTAATCCA+TGG - chr8.3:60252946-60252965 None:intergenic 45.0%
TCTTAAGAGGAGAGAGATCG+AGG - chr8.3:60253044-60253063 None:intergenic 45.0%
TTCTTGATGGGAAGTAGTGC+AGG + chr8.3:60252979-60252998 MS.gene37504:CDS 45.0%
! AGACACTTGGATTTTGCGCT+TGG - chr8.3:60252918-60252937 None:intergenic 45.0%
! GACACTTGGATTTTGCGCTT+GGG - chr8.3:60252917-60252936 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.3:60253277-60253296 MS.gene37504:CDS 45.0%
! GGACGTTGTCATTTCTTGTG+AGG - chr8.3:60252570-60252589 None:intergenic 45.0%
! GGAGCTAGTGAAGATTTTGG+AGG + chr8.3:60253323-60253342 MS.gene37504:CDS 45.0%
! TCCTTTTGCCTATCCACCAA+GGG - chr8.3:60253306-60253325 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.3:60253276-60253295 MS.gene37504:CDS 45.0%
!! TCCATGGATTAGAGACAACG+TGG + chr8.3:60252942-60252961 MS.gene37504:CDS 45.0%
!! TGAAGATTTTGGAGGCACGT+GGG + chr8.3:60253331-60253350 MS.gene37504:CDS 45.0%
!!! CGTGGAGTCTGTTTTTTGTG+AGG + chr8.3:60253359-60253378 MS.gene37504:CDS 45.0%
AAGAAGGCGGTGGATGGTTT+GGG - chr8.3:60252687-60252706 None:intergenic 50.0%
AATGAGAGGAAGCTTAGCCG+CGG - chr8.3:60252710-60252729 None:intergenic 50.0%
ACATTGGTGGAAGGAGATGG+AGG - chr8.3:60252773-60252792 None:intergenic 50.0%
AGATGGAGGAAGGATGGTAG+CGG - chr8.3:60252759-60252778 None:intergenic 50.0%
CAGGGTTGAGCTTGATTTCG+AGG - chr8.3:60252540-60252559 None:intergenic 50.0%
CGAAGGTGGAACAACATTGG+TGG - chr8.3:60252786-60252805 None:intergenic 50.0%
CTCTGGACCCCACCAAAAAA+TGG - chr8.3:60253090-60253109 None:intergenic 50.0%
CTTTGCCTGAGGGCAAAGAT+CGG + chr8.3:60253184-60253203 MS.gene37504:CDS 50.0%
GGTGGAACAACATTGGTGGA+AGG - chr8.3:60252782-60252801 None:intergenic 50.0%
GTTTGGGAGGAAGATGCGAA+TGG - chr8.3:60252671-60252690 None:intergenic 50.0%
TGATTAGGATCGGAGGATGG+TGG - chr8.3:60252601-60252620 None:intergenic 50.0%
TGGGCTCTATCTTTGCCTGA+GGG + chr8.3:60253174-60253193 MS.gene37504:CDS 50.0%
TTCTTGTGAGGGAACCGTCA+GGG - chr8.3:60252558-60252577 None:intergenic 50.0%
TTGATGGGAAGTAGTGCAGG+TGG + chr8.3:60252982-60253001 MS.gene37504:CDS 50.0%
TTTCTTGTGAGGGAACCGTC+AGG - chr8.3:60252559-60252578 None:intergenic 50.0%
TTTGCCTGAGGGCAAAGATC+GGG + chr8.3:60253185-60253204 MS.gene37504:CDS 50.0%
! CTCCTTTTGCCTATCCACCA+AGG - chr8.3:60253307-60253326 None:intergenic 50.0%
! CTGCCGAGGTGCTTTGTTAA+TGG + chr8.3:60253267-60253286 MS.gene37504:CDS 50.0%
! TCCCTTGGTGGATAGGCAAA+AGG + chr8.3:60253302-60253321 MS.gene37504:CDS 50.0%
! TGAGGATGGGTTTCATGCTG+TGG + chr8.3:60253377-60253396 MS.gene37504:CDS 50.0%
!! ACGCTGTTGATTCACTGCTC+TGG + chr8.3:60252884-60252903 MS.gene37504:CDS 50.0%
!! GAAGATTTTGGAGGCACGTG+GGG + chr8.3:60253332-60253351 MS.gene37504:CDS 50.0%
!! GATGCGAATGGAGGTGTTTG+TGG - chr8.3:60252659-60252678 None:intergenic 50.0%
!! GTGAAGATTTTGGAGGCACG+TGG + chr8.3:60253330-60253349 MS.gene37504:CDS 50.0%
!!! CATTTTTTGGTGGGGTCCAG+AGG + chr8.3:60253088-60253107 MS.gene37504:CDS 50.0%
AATCGGTATTTGGGCGGCGA+AGG - chr8.3:60252803-60252822 None:intergenic 55.0%
ACAGCGTCATCATAGGCAGC+AGG - chr8.3:60252871-60252890 None:intergenic 55.0%
AGCGGAAGAAACCACCACCA+TGG - chr8.3:60252741-60252760 None:intergenic 55.0%
CAGCGTCATCATAGGCAGCA+GGG - chr8.3:60252870-60252889 None:intergenic 55.0%
CATCATAGGCAGCAGGGAGA+CGG - chr8.3:60252864-60252883 None:intergenic 55.0%
CGGCGAAGGTGGAACAACAT+TGG - chr8.3:60252789-60252808 None:intergenic 55.0%
CGTGAGACGGTGATCAACTG+AGG - chr8.3:60252833-60252852 None:intergenic 55.0%
GAAGAAGGCGGTGGATGGTT+TGG - chr8.3:60252688-60252707 None:intergenic 55.0%
GAAGCTCGGATTCTGTCCTC+TGG - chr8.3:60253107-60253126 None:intergenic 55.0%
GGAAGGAGATGGAGGAAGGA+TGG - chr8.3:60252765-60252784 None:intergenic 55.0%
GTGGGCTCTATCTTTGCCTG+AGG + chr8.3:60253173-60253192 MS.gene37504:CDS 55.0%
TGATCCCGATCTTTGCCCTC+AGG - chr8.3:60253192-60253211 None:intergenic 55.0%
TGGGAGGAAGATGCGAATGG+AGG - chr8.3:60252668-60252687 None:intergenic 55.0%
TGGTGGAAGGAGATGGAGGA+AGG - chr8.3:60252769-60252788 None:intergenic 55.0%
AGAAGATCGGACAGCTGCCG+AGG + chr8.3:60253253-60253272 MS.gene37504:CDS 60.0%
AGCTTAGCCGCGGAAGAAGG+CGG - chr8.3:60252700-60252719 None:intergenic 60.0%
GGAAGCTTAGCCGCGGAAGA+AGG - chr8.3:60252703-60252722 None:intergenic 60.0%
! AAGGCGGTGGATGGTTTGGG+AGG - chr8.3:60252684-60252703 None:intergenic 60.0%
! AGGATCGGAGGATGGTGGCA+CGG - chr8.3:60252596-60252615 None:intergenic 60.0%
! GTGGGGATCCCTTGGTGGAT+AGG + chr8.3:60253295-60253314 MS.gene37504:CDS 60.0%
CCATCCACCGCCTTCTTCCG+CGG + chr8.3:60252690-60252709 MS.gene37504:CDS 65.0%
CGGTATTTGGGCGGCGAAGG+TGG - chr8.3:60252800-60252819 None:intergenic 65.0%
CTACGGTGGGGATCCCTTGG+TGG + chr8.3:60253290-60253309 MS.gene37504:CDS 65.0%
GACGGTGCTCTGGCGTGAGA+CGG - chr8.3:60252846-60252865 None:intergenic 65.0%
TGGCTACGGTGGGGATCCCT+TGG + chr8.3:60253287-60253306 MS.gene37504:CDS 65.0%
TTAGCCGCGGAAGAAGGCGG+TGG - chr8.3:60252697-60252716 None:intergenic 65.0%
! ATCGGAGGATGGTGGCACGG+TGG - chr8.3:60252593-60252612 None:intergenic 65.0%
! TCGGAGGATGGTGGCACGGT+GGG - chr8.3:60252592-60252611 None:intergenic 65.0%
CCGCGGAAGAAGGCGGTGGA+TGG - chr8.3:60252693-60252712 None:intergenic 70.0%
GCAGCAGGGAGACGGTGCTC+TGG - chr8.3:60252856-60252875 None:intergenic 70.0%
! CGGAGGATGGTGGCACGGTG+GGG - chr8.3:60252591-60252610 None:intergenic 70.0%
! GGAGGCACGTGGGGTGCACG+TGG + chr8.3:60253341-60253360 MS.gene37504:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 60252484 60253473 60252484 ID=MS.gene37504
chr8.3 mRNA 60252484 60253473 60252484 ID=MS.gene37504.t1;Parent=MS.gene37504
chr8.3 exon 60252484 60253473 60252484 ID=MS.gene37504.t1.exon1;Parent=MS.gene37504.t1
chr8.3 CDS 60252484 60253473 60252484 ID=cds.MS.gene37504.t1;Parent=MS.gene37504.t1
Gene Sequence

>MS.gene37504

ATGGCAGAATCATCACCTTCCAAACAAAACTCCACCATCGATCCCTATGAATTCCTCGAAATCAAGCTCAACCCTGACGGTTCCCTCACAAGAAATGACAACGTCCCCACCGTGCCACCATCCTCCGATCCTAATCAAACTGTTCTATCTAAAGATATTATCCTAAACACAGCCACAAACACCTCCATTCGCATCTTCCTCCCAAACCATCCACCGCCTTCTTCCGCGGCTAAGCTTCCTCTCATTCTCTACTTCCATGGTGGTGGTTTCTTCCGCTACCATCCTTCCTCCATCTCCTTCCACCAATGTTGTTCCACCTTCGCCGCCCAAATACCGATTGTTGTAGCCTCAGTTGATCACCGTCTCACGCCAGAGCACCGTCTCCCTGCTGCCTATGATGACGCTGTTGATTCACTGCTCTGGCTCAGAGCCCAAGCGCAAAATCCAAGTGTCTCTGATCCATGGATTAGAGACAACGTGGACTTTGATAACTGCTTCTTGATGGGAAGTAGTGCAGGTGGTAACATAGCGTATTTCGCAGGTCTACGTGCTCTTGACCTCGATCTCTCTCCTCTTAAGATCCAAGGGCTTATAATGAATGCTCCATTTTTTGGTGGGGTCCAGAGGACAGAATCCGAGCTTCGTTTCATTAACGATTATATACTACCCTTATCAGCAAGTGATCTTATGTGGGCTCTATCTTTGCCTGAGGGCAAAGATCGGGATCACGTGTATTGTAATCCAAAAATTTCGGATGTGATATACGGTGAGAAGATCGGACAGCTGCCGAGGTGCTTTGTTAATGGCTACGGTGGGGATCCCTTGGTGGATAGGCAAAAGGAGCTAGTGAAGATTTTGGAGGCACGTGGGGTGCACGTGGAGTCTGTTTTTTGTGAGGATGGGTTTCATGCTGTGGAACTCTTTGATCCTGCTAAGGCACAAGCATTAATTGAGTACGTTAAGAAATTTATTTCCTCGGTTGATACTTAG
Protein sequence

>MS.gene37504.t1

MAESSPSKQNSTIDPYEFLEIKLNPDGSLTRNDNVPTVPPSSDPNQTVLSKDIILNTATNTSIRIFLPNHPPPSSAAKLPLILYFHGGGFFRYHPSSISFHQCCSTFAAQIPIVVASVDHRLTPEHRLPAAYDDAVDSLLWLRAQAQNPSVSDPWIRDNVDFDNCFLMGSSAGGNIAYFAGLRALDLDLSPLKIQGLIMNAPFFGGVQRTESELRFINDYILPLSASDLMWALSLPEGKDRDHVYCNPKISDVIYGEKIGQLPRCFVNGYGGDPLVDRQKELVKILEARGVHVESVFCEDGFHAVELFDPAKAQALIEYVKKFISSVDT