AlfalfaGEDB | MS.gene38102

M. sativa cultivar XinJiangDaYe / MS.gene38102

KEGG: -
GO: -
PFAM: PF02469.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38102.t1	XP_003618017.1	95.1	263	11	2	1	262	1	262	7.90E-94	353.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38102.t1	Q9SJ81	69.7	152	46	0	50	201	48	199	1.5e-56	221.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38102.t1	G7K503	95.1	263	11	2	1	262	1	262	5.7e-94	353.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049298	MS.gene38102	0.849283	3.57E-60	-1.69E-46
MS.gene050133	MS.gene38102	0.824598	7.40E-54	-1.69E-46
MS.gene050315	MS.gene38102	-0.800012	1.76E-48	-1.69E-46
MS.gene050710	MS.gene38102	0.842077	3.22E-58	-1.69E-46
MS.gene050874	MS.gene38102	0.834582	2.76E-56	-1.69E-46
MS.gene050875	MS.gene38102	0.841904	3.58E-58	-1.69E-46
MS.gene051439	MS.gene38102	0.801498	8.75E-49	-1.69E-46
MS.gene051552	MS.gene38102	0.857233	1.88E-62	-1.69E-46
MS.gene051838	MS.gene38102	-0.818633	1.77E-52	-1.69E-46
MS.gene051914	MS.gene38102	0.834463	2.95E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38102.t1	MTR_5g098060	95.817	263	9	2	1	262	1	262	2.14e-176	486
MS.gene38102.t1	MTR_7g101080	40.237	169	90	4	33	195	26	189	1.45e-32	120
MS.gene38102.t1	MTR_2g090765	33.043	230	151	3	31	259	22	249	3.86e-27	105
MS.gene38102.t1	MTR_4g059720	35.789	190	111	4	8	194	8	189	8.27e-25	99.4
MS.gene38102.t1	MTR_4g059840	32.787	244	146	8	28	261	55	290	7.85e-23	95.1
MS.gene38102.t1	MTR_2g093990	36.667	150	90	2	48	194	41	188	3.87e-21	89.7
MS.gene38102.t1	MTR_4g059790	32.174	230	138	8	28	247	55	276	5.01e-21	90.1
MS.gene38102.t1	MTR_4g053380	29.796	245	152	7	28	262	59	293	6.80e-21	89.7
MS.gene38102.t1	MTR_7g075453	33.714	175	110	4	47	219	183	353	4.81e-20	89.0
MS.gene38102.t1	MTR_8g087470	32.086	187	106	5	22	190	56	239	6.60e-19	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38102.t1	AT2G04780	65.079	189	66	0	47	235	45	233	2.30e-77	235
MS.gene38102.t1	AT2G04780	65.079	189	66	0	47	235	45	233	2.30e-77	235
MS.gene38102.t1	AT5G44130	34.359	195	120	4	47	237	35	225	1.19e-31	117
MS.gene38102.t1	AT2G20520	36.444	225	125	6	16	224	1	223	4.22e-31	116
MS.gene38102.t1	AT1G03870	33.333	219	130	6	47	262	38	243	5.55e-31	115
MS.gene38102.t1	AT5G03170	36.842	171	104	3	37	204	26	195	1.02e-28	109
MS.gene38102.t1	AT5G60490	34.054	185	109	2	48	230	39	212	1.01e-22	94.0
MS.gene38102.t1	AT3G46550	34.694	196	113	7	22	211	187	373	2.92e-21	92.4
MS.gene38102.t1	AT3G60900	34.659	176	105	5	39	208	180	351	1.48e-18	84.7
MS.gene38102.t1	AT2G45470	32.889	225	133	5	29	240	170	389	1.31e-16	79.3

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Find 65 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAAAAGTTGCCAACACA+AGG	0.587265	5.1:-78375593	None:intergenic
AACCTTGTGTTGGCAACTTT+TGG	0.243612	5.1:+78375591	MS.gene38102:CDS
AATAGAAATGTGGCAAAGCA+TGG	0.549806	5.1:-78375200	None:intergenic
AATCTCATCAGCTTTGAGTT+TGG	0.359351	5.1:-78375160	None:intergenic
AATGTGGCAAAGCATGGAAA+AGG	0.503046	5.1:-78375194	None:intergenic
AATTTGGGGCAACCTTGTGT+TGG	0.628436	5.1:+78375581	MS.gene38102:CDS
ACAAAATCTGGTGTAGGTGC+TGG	0.568282	5.1:-78374964	None:intergenic
ACCGGCAAATGTAGGAGTTG+AGG	0.606038	5.1:-78375256	None:intergenic
ACGATTTGCTCCCAGCACTT+TGG	0.511706	5.1:-78375503	None:intergenic
ACTGAATTACTCACCGTTGC+TGG	0.419071	5.1:+78374994	MS.gene38102:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGTCAAAATTAATTCAGGA+TGG	+	chr5.1:78375316-78375335	MS.gene38102:CDS	30.0%
GGAACTGTCAAAATTAATTC+AGG	+	chr5.1:78375312-78375331	MS.gene38102:CDS	30.0%
TCAACTTGATAAATTGCAAC+AGG	-	chr5.1:78375381-78375400	None:intergenic	30.0%
TTGAATTTCACCGATAATTC+CGG	+	chr5.1:78375291-78375310	MS.gene38102:CDS	30.0%
AATAGAAATGTGGCAAAGCA+TGG	-	chr5.1:78375203-78375222	None:intergenic	35.0%
AGGTTAACAAAATCTGGTGT+AGG	-	chr5.1:78374973-78374992	None:intergenic	35.0%
ATAAATTGCAACAGGATCAG+TGG	-	chr5.1:78375373-78375392	None:intergenic	35.0%
ATTCAAAGTGTAATCACCAC+CGG	-	chr5.1:78375277-78375296	None:intergenic	35.0%
TCAGCTAGTGAATAGAAATG+TGG	-	chr5.1:78375213-78375232	None:intergenic	35.0%
TCAGTGAGGTTAACAAAATC+TGG	-	chr5.1:78374979-78374998	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	78374847	78375635	78374847	ID=MS.gene38102
chr5.1	mRNA	78374847	78375635	78374847	ID=MS.gene38102.t1;Parent=MS.gene38102
chr5.1	exon	78374847	78375635	78374847	ID=MS.gene38102.t1.exon1;Parent=MS.gene38102.t1
chr5.1	CDS	78374847	78375635	78374847	ID=cds.MS.gene38102.t1;Parent=MS.gene38102.t1

Gene Sequence

>MS.gene38102

ATGAAGGTTTCATTGATTTTTCTTGTGAGCTGCACTCTGCTGCTTCTGAGCTCATCGGCATTTGCCAAAACCGTAAGTCCACCCTCTCCCCCCGAGAGTCCAACTCCGGCTCCAGCACCAGCACCTACACCAGATTTTGTTAACCTCACTGAATTACTCACCGTTGCTGGTCCATTTCACACTTTTCTTCAATACCTTCAATCCACAAAAGTTTTGGACACGTTCCAAAACCAAGCAAACAACACTGAAGAAGGAATCACTATCTTTGTTCCAAAAGACAGTTCCTTCGCATCATTGAAGAAACCTTCTTTATCCAAACTCAAAGCTGATGAGATTAAACAAGTGATCCTTTTCCATGCTTTGCCACATTTCTATTCACTAGCTGATTTCAAAAACCTTAGCCAAACTGCCTCAACTCCTACATTTGCCGGTGGTGATTACACTTTGAATTTCACCGATAATTCCGGAACTGTCAAAATTAATTCAGGATGGTCAATCACTAAGGTGACTAGTGCAGTTCATGCCACTGATCCTGTTGCAATTTATCAAGTTGATAAGGTTTTGCTTCCTGAGGCTATTTTTGGCACTGATATTCCTCCTGTTCCGGCTCCTGCACCCACACCTGAAATTGCGCCTGCAGCTGATTCTCCAGCTGACCAAAGTGCTGGGAGCAAATCGTCTTCACCTTCATCTTCACCAGATAGTTCGTCTTCTTACAAGATCGTCAGCTATGGAATTTGGGGCAACCTTGTGTTGGCAACTTTTGGTTTGTTGGTGGTACTCTTGTGA

Protein sequence

>MS.gene38102.t1

MKVSLIFLVSCTLLLLSSSAFAKTVSPPSPPESPTPAPAPAPTPDFVNLTELLTVAGPFHTFLQYLQSTKVLDTFQNQANNTEEGITIFVPKDSSFASLKKPSLSKLKADEIKQVILFHALPHFYSLADFKNLSQTASTPTFAGGDYTLNFTDNSGTVKINSGWSITKVTSAVHATDPVAIYQVDKVLLPEAIFGTDIPPVPAPAPTPEIAPAADSPADQSAGSKSSSPSSSPDSSSSYKIVSYGIWGNLVLATFGLLVVLL