Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38166.t1 | XP_003618017.1 | 95.1 | 263 | 11 | 2 | 1 | 262 | 1 | 262 | 3.50E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38166.t1 | Q9SJ81 | 69.7 | 152 | 46 | 0 | 50 | 201 | 48 | 199 | 1.5e-56 | 221.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38166.t1 | G7K503 | 95.1 | 263 | 11 | 2 | 1 | 262 | 1 | 262 | 2.6e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene38166 | 0.852095 | 5.78E-61 | -1.69E-46 |
| MS.gene050133 | MS.gene38166 | 0.836403 | 9.55E-57 | -1.69E-46 |
| MS.gene050710 | MS.gene38166 | 0.843589 | 1.28E-58 | -1.69E-46 |
| MS.gene050874 | MS.gene38166 | 0.833082 | 6.54E-56 | -1.69E-46 |
| MS.gene050875 | MS.gene38166 | 0.840355 | 9.14E-58 | -1.69E-46 |
| MS.gene051439 | MS.gene38166 | 0.829963 | 3.84E-55 | -1.69E-46 |
| MS.gene051552 | MS.gene38166 | 0.83963 | 1.41E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene38166 | -0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene051914 | MS.gene38166 | 0.832054 | 1.18E-55 | -1.69E-46 |
| MS.gene052169 | MS.gene38166 | 0.805772 | 1.14E-49 | -1.69E-46 |
| MS.gene052209 | MS.gene38166 | 0.815622 | 8.41E-52 | -1.69E-46 |
| MS.gene054593 | MS.gene38166 | 0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene054633 | MS.gene38166 | 0.802485 | 5.49E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene38166 | 0.830152 | 3.45E-55 | -1.69E-46 |
| MS.gene054850 | MS.gene38166 | 0.810357 | 1.20E-50 | -1.69E-46 |
| MS.gene054941 | MS.gene38166 | 0.847089 | 1.44E-59 | -1.69E-46 |
| MS.gene05652 | MS.gene38166 | 0.871125 | 8.67E-67 | -1.69E-46 |
| MS.gene056633 | MS.gene38166 | -0.806763 | 7.02E-50 | -1.69E-46 |
| MS.gene056678 | MS.gene38166 | 0.81609 | 6.61E-52 | -1.69E-46 |
| MS.gene056688 | MS.gene38166 | 0.807605 | 4.66E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene38166 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene057081 | MS.gene38166 | 0.807016 | 6.21E-50 | -1.69E-46 |
| MS.gene057356 | MS.gene38166 | 0.821914 | 3.13E-53 | -1.69E-46 |
| MS.gene057669 | MS.gene38166 | 0.865521 | 5.56E-65 | -1.69E-46 |
| MS.gene057717 | MS.gene38166 | 0.823967 | 1.04E-53 | -1.69E-46 |
| MS.gene058076 | MS.gene38166 | 0.800687 | 1.28E-48 | -1.69E-46 |
| MS.gene058128 | MS.gene38166 | 0.829457 | 5.09E-55 | -1.69E-46 |
| MS.gene058158 | MS.gene38166 | 0.810272 | 1.25E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene38166 | 0.845952 | 2.95E-59 | -1.69E-46 |
| MS.gene058853 | MS.gene38166 | 0.804137 | 2.50E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene38166 | 0.858455 | 8.14E-63 | -1.69E-46 |
| MS.gene05960 | MS.gene38166 | 0.837718 | 4.41E-57 | -1.69E-46 |
| MS.gene059616 | MS.gene38166 | 0.83234 | 1.00E-55 | -1.69E-46 |
| MS.gene059717 | MS.gene38166 | -0.828899 | 6.96E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene38166 | 0.804168 | 2.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38166.t1 | MTR_5g098060 | 91.255 | 263 | 21 | 2 | 1 | 262 | 1 | 262 | 3.27e-138 | 389 |
| MS.gene38166.t1 | MTR_7g101080 | 40.237 | 169 | 90 | 4 | 33 | 195 | 26 | 189 | 1.42e-32 | 120 |
| MS.gene38166.t1 | MTR_2g090765 | 32.500 | 240 | 139 | 5 | 31 | 259 | 22 | 249 | 2.24e-27 | 106 |
| MS.gene38166.t1 | MTR_4g059720 | 35.789 | 190 | 111 | 4 | 8 | 194 | 8 | 189 | 8.19e-25 | 99.4 |
| MS.gene38166.t1 | MTR_4g059840 | 32.653 | 245 | 142 | 9 | 28 | 262 | 55 | 286 | 2.93e-22 | 93.6 |
| MS.gene38166.t1 | MTR_2g093990 | 36.667 | 150 | 90 | 2 | 48 | 194 | 41 | 188 | 4.71e-21 | 89.4 |
| MS.gene38166.t1 | MTR_4g059790 | 32.456 | 228 | 140 | 8 | 28 | 247 | 55 | 276 | 2.27e-20 | 88.6 |
| MS.gene38166.t1 | MTR_4g053380 | 29.237 | 236 | 150 | 6 | 28 | 253 | 59 | 287 | 6.37e-20 | 87.4 |
| MS.gene38166.t1 | MTR_7g075453 | 33.714 | 175 | 110 | 4 | 47 | 219 | 183 | 353 | 6.56e-20 | 88.6 |
| MS.gene38166.t1 | MTR_8g087470 | 32.086 | 187 | 106 | 5 | 22 | 190 | 56 | 239 | 6.47e-19 | 84.7 |
| MS.gene38166.t1 | MTR_8g087460 | 31.551 | 187 | 107 | 5 | 22 | 190 | 56 | 239 | 2.39e-18 | 83.2 |
| MS.gene38166.t1 | MTR_2g017970 | 29.032 | 217 | 140 | 6 | 48 | 260 | 68 | 274 | 2.52e-18 | 82.4 |
| MS.gene38166.t1 | MTR_2g017950 | 28.829 | 222 | 124 | 7 | 1 | 190 | 2 | 221 | 2.57e-18 | 82.8 |
| MS.gene38166.t1 | MTR_2g017960 | 29.381 | 194 | 128 | 4 | 48 | 237 | 68 | 256 | 4.25e-18 | 82.0 |
| MS.gene38166.t1 | MTR_8g087450 | 31.098 | 164 | 104 | 4 | 31 | 190 | 63 | 221 | 1.05e-17 | 80.9 |
| MS.gene38166.t1 | MTR_2g437700 | 34.395 | 157 | 96 | 3 | 46 | 197 | 193 | 347 | 1.72e-17 | 81.6 |
| MS.gene38166.t1 | MTR_2g093980 | 32.961 | 179 | 111 | 5 | 23 | 196 | 45 | 219 | 1.05e-16 | 78.2 |
| MS.gene38166.t1 | MTR_4g059780 | 29.843 | 191 | 112 | 4 | 26 | 196 | 52 | 240 | 6.21e-16 | 76.3 |
| MS.gene38166.t1 | MTR_2g093970 | 28.502 | 207 | 121 | 5 | 9 | 190 | 9 | 213 | 1.69e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38166.t1 | AT2G04780 | 65.079 | 189 | 66 | 0 | 47 | 235 | 45 | 233 | 2.43e-77 | 235 |
| MS.gene38166.t1 | AT2G04780 | 65.079 | 189 | 66 | 0 | 47 | 235 | 45 | 233 | 2.43e-77 | 235 |
| MS.gene38166.t1 | AT5G44130 | 33.503 | 197 | 119 | 4 | 47 | 237 | 35 | 225 | 6.84e-32 | 118 |
| MS.gene38166.t1 | AT2G20520 | 36.444 | 225 | 125 | 6 | 16 | 224 | 1 | 223 | 5.10e-31 | 115 |
| MS.gene38166.t1 | AT1G03870 | 33.023 | 215 | 135 | 5 | 47 | 258 | 38 | 246 | 1.20e-30 | 114 |
| MS.gene38166.t1 | AT5G60490 | 40.268 | 149 | 87 | 1 | 48 | 194 | 39 | 187 | 6.60e-29 | 110 |
| MS.gene38166.t1 | AT5G03170 | 36.842 | 171 | 104 | 3 | 37 | 204 | 26 | 195 | 1.07e-28 | 109 |
| MS.gene38166.t1 | AT3G46550 | 34.184 | 196 | 114 | 7 | 22 | 211 | 187 | 373 | 9.16e-21 | 91.3 |
| MS.gene38166.t1 | AT3G60900 | 34.659 | 176 | 105 | 5 | 39 | 208 | 180 | 351 | 1.70e-18 | 84.7 |
| MS.gene38166.t1 | AT2G45470 | 32.889 | 225 | 133 | 5 | 29 | 240 | 170 | 389 | 1.34e-16 | 79.3 |
Find 68 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTGTCAGCTATGGAATT+TGG | 0.170303 | 5.3:+79281855 | MS.gene38166:CDS |
| CAGTGTTGTTTGCTTGGTTT+TGG | 0.201552 | 5.3:-79281361 | None:intergenic |
| TTGAATTTCACCGATAATTC+TGG | 0.232404 | 5.3:+79281581 | MS.gene38166:CDS |
| TTGCTTCCTGAGGCAATATT+TGG | 0.238748 | 5.3:+79281698 | MS.gene38166:CDS |
| CCTTCAATCCACAAAAGTTT+TGG | 0.254005 | 5.3:+79281331 | MS.gene38166:CDS |
| CTTCTTCAGTGTTGTTTGCT+TGG | 0.268289 | 5.3:-79281367 | None:intergenic |
| AGAGGGTGGACTTACGGTTT+TGG | 0.270515 | 5.3:-79281201 | None:intergenic |
| GATTGTCAGCTATGGAATTT+GGG | 0.295753 | 5.3:+79281856 | MS.gene38166:CDS |
| GGAACTGTCAAAATTAATTC+AGG | 0.296860 | 5.3:+79281602 | MS.gene38166:CDS |
| GATGCGAAGGAACTGTCTTT+TGG | 0.299960 | 5.3:-79281407 | None:intergenic |
| CTCCCAGCACTTTGGTCAGC+TGG | 0.303486 | 5.3:-79281785 | None:intergenic |
| AACCTTGTGTTGGCAACATT+TGG | 0.304302 | 5.3:+79281881 | MS.gene38166:CDS |
| CACTGATATTCCACCTGTTC+CGG | 0.305792 | 5.3:+79281721 | MS.gene38166:CDS |
| GGAGCCGGAGTTGGACTCTC+GGG | 0.338226 | 5.3:-79281227 | None:intergenic |
| TTTGACAGTTCCAGAATTAT+CGG | 0.339576 | 5.3:-79281591 | None:intergenic |
| GTTGGCAACATTTGGTTTGT+TGG | 0.348928 | 5.3:+79281889 | MS.gene38166:CDS |
| TCAGCTGCAGGCGCAATATC+TGG | 0.356724 | 5.3:-79281758 | None:intergenic |
| AATCTCATCAGCTTTGAGTT+TGG | 0.359351 | 5.3:-79281450 | None:intergenic |
| GCCTCAACTCCAACATTTGC+CGG | 0.365489 | 5.3:+79281545 | MS.gene38166:CDS |
| GTGGGTGCAGGAGCCGGAAC+AGG | 0.378032 | 5.3:-79281734 | None:intergenic |
| ACTGAATTACTCACTGTTGC+TGG | 0.384658 | 5.3:+79281284 | MS.gene38166:CDS |
| TCAGTGAGGTTAACAAAATC+TGG | 0.394471 | 5.3:-79281266 | None:intergenic |
| TGCAATTTATCAAGTTGATA+AGG | 0.410347 | 5.3:+79281673 | MS.gene38166:CDS |
| TCAACTTGATAAATTGCAAC+AGG | 0.410462 | 5.3:-79281668 | None:intergenic |
| TTGTAAGAAGACGAACTATC+TGG | 0.411721 | 5.3:-79281833 | None:intergenic |
| TGGAGCCGGAGTTGGACTCT+CGG | 0.431321 | 5.3:-79281228 | None:intergenic |
| ATGTTGGAGTTGAGGCAGTT+TGG | 0.434404 | 5.3:-79281538 | None:intergenic |
| GCTGGTGCTGGAGCCGGAGT+TGG | 0.434583 | 5.3:-79281236 | None:intergenic |
| TATTGAAGAAAAGTGTGAAA+TGG | 0.451994 | 5.3:-79281308 | None:intergenic |
| GTAGGTGCTGGTGCTGGAGC+CGG | 0.452561 | 5.3:-79281242 | None:intergenic |
| GCAATATCTGGTGTGGGTGC+AGG | 0.465564 | 5.3:-79281746 | None:intergenic |
| GAGTTGAGGCAGTTTGGCTA+AGG | 0.468259 | 5.3:-79281532 | None:intergenic |
| TCTCCAGCTGACCAAAGTGC+TGG | 0.473142 | 5.3:+79281782 | MS.gene38166:CDS |
| TCTGGTGTGGGTGCAGGAGC+CGG | 0.477035 | 5.3:-79281740 | None:intergenic |
| GAGCCGGAGTTGGACTCTCG+GGG | 0.491727 | 5.3:-79281226 | None:intergenic |
| CAAGCAAACAACACTGAAGA+AGG | 0.495908 | 5.3:+79281368 | MS.gene38166:CDS |
| AATGTGGCAAAGCATGGAAA+AGG | 0.503046 | 5.3:-79281484 | None:intergenic |
| TCTTACAAGATTGTCAGCTA+TGG | 0.505345 | 5.3:+79281848 | MS.gene38166:CDS |
| ACGATTTGCTCCCAGCACTT+TGG | 0.511706 | 5.3:-79281793 | None:intergenic |
| GGCAACATTTGGTTTGTTGG+TGG | 0.517913 | 5.3:+79281892 | MS.gene38166:CDS |
| TCTGGTGTAGGTGCTGGTGC+TGG | 0.520921 | 5.3:-79281248 | None:intergenic |
| GCAACAGAGTGCAGCTCACA+AGG | 0.522471 | 5.3:-79281157 | None:intergenic |
| TCAGTGCCAAATATTGCCTC+AGG | 0.530169 | 5.3:-79281704 | None:intergenic |
| TCAGCTGGAGAATCAGCTGC+AGG | 0.533442 | 5.3:-79281770 | None:intergenic |
| GGTGCAGGAGCCGGAACAGG+TGG | 0.536302 | 5.3:-79281731 | None:intergenic |
| CTCCAGCTGACCAAAGTGCT+GGG | 0.544197 | 5.3:+79281783 | MS.gene38166:CDS |
| AATAGAAATGTGGCAAAGCA+TGG | 0.549806 | 5.3:-79281490 | None:intergenic |
| TTCAGGATGGTCAATCACTA+AGG | 0.555642 | 5.3:+79281619 | MS.gene38166:CDS |
| TAATCACCACCGGCAAATGT+TGG | 0.556429 | 5.3:-79281554 | None:intergenic |
| AGGTTAACAAAATCTGGTGT+AGG | 0.563929 | 5.3:-79281260 | None:intergenic |
| GCTTTGAGTTTGGATAAAGA+AGG | 0.566467 | 5.3:-79281440 | None:intergenic |
| ACAAAATCTGGTGTAGGTGC+TGG | 0.568282 | 5.3:-79281254 | None:intergenic |
| TGCAGGCGCAATATCTGGTG+TGG | 0.569523 | 5.3:-79281753 | None:intergenic |
| GAACTATCTGGTGAAGATGA+AGG | 0.574002 | 5.3:-79281821 | None:intergenic |
| AACCAAATGTTGCCAACACA+AGG | 0.581175 | 5.3:-79281883 | None:intergenic |
| GCAGGCGCAATATCTGGTGT+GGG | 0.581910 | 5.3:-79281752 | None:intergenic |
| ACCGGCAAATGTTGGAGTTG+AGG | 0.585382 | 5.3:-79281546 | None:intergenic |
| AGGTTTCTTCAATGATGCGA+AGG | 0.588628 | 5.3:-79281420 | None:intergenic |
| CTGTCAAAATTAATTCAGGA+TGG | 0.599822 | 5.3:+79281606 | MS.gene38166:CDS |
| GCCGGAGTTGGACTCTCGGG+GGG | 0.600157 | 5.3:-79281224 | None:intergenic |
| TCTGTTGCTTCTGAGCTCAT+CGG | 0.605895 | 5.3:+79281172 | MS.gene38166:CDS |
| ATTCAAAGTGTAATCACCAC+CGG | 0.611570 | 5.3:-79281564 | None:intergenic |
| AGCCGGAGTTGGACTCTCGG+GGG | 0.617688 | 5.3:-79281225 | None:intergenic |
| AATTTGGGGCAACCTTGTGT+TGG | 0.628436 | 5.3:+79281871 | MS.gene38166:CDS |
| ATTGTCAGCTATGGAATTTG+GGG | 0.656452 | 5.3:+79281857 | MS.gene38166:CDS |
| TCAGCTAGTGAATAGAAATG+TGG | 0.662953 | 5.3:-79281500 | None:intergenic |
| TCAACTCCAACATTTGCCGG+TGG | 0.688338 | 5.3:+79281548 | MS.gene38166:CDS |
| CAACAGTGAGTAATTCAGTG+AGG | 0.749189 | 5.3:-79281280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGAAGAAAAGTGTGAAA+TGG | - | chr5.3:79281311-79281330 | None:intergenic | 25.0% |
| !!! | TGCAATTTATCAAGTTGATA+AGG | + | chr5.3:79281673-79281692 | MS.gene38166:CDS | 25.0% |
| CTGTCAAAATTAATTCAGGA+TGG | + | chr5.3:79281606-79281625 | MS.gene38166:CDS | 30.0% | |
| GGAACTGTCAAAATTAATTC+AGG | + | chr5.3:79281602-79281621 | MS.gene38166:CDS | 30.0% | |
| TCAACTTGATAAATTGCAAC+AGG | - | chr5.3:79281671-79281690 | None:intergenic | 30.0% | |
| TTGAATTTCACCGATAATTC+TGG | + | chr5.3:79281581-79281600 | MS.gene38166:CDS | 30.0% | |
| TTTGACAGTTCCAGAATTAT+CGG | - | chr5.3:79281594-79281613 | None:intergenic | 30.0% | |
| AATAGAAATGTGGCAAAGCA+TGG | - | chr5.3:79281493-79281512 | None:intergenic | 35.0% | |
| AGATTGTCAGCTATGGAATT+TGG | + | chr5.3:79281855-79281874 | MS.gene38166:CDS | 35.0% | |
| AGGTTAACAAAATCTGGTGT+AGG | - | chr5.3:79281263-79281282 | None:intergenic | 35.0% | |
| ATTCAAAGTGTAATCACCAC+CGG | - | chr5.3:79281567-79281586 | None:intergenic | 35.0% | |
| ATTGTCAGCTATGGAATTTG+GGG | + | chr5.3:79281857-79281876 | MS.gene38166:CDS | 35.0% | |
| GATTGTCAGCTATGGAATTT+GGG | + | chr5.3:79281856-79281875 | MS.gene38166:CDS | 35.0% | |
| TCAGCTAGTGAATAGAAATG+TGG | - | chr5.3:79281503-79281522 | None:intergenic | 35.0% | |
| TCAGTGAGGTTAACAAAATC+TGG | - | chr5.3:79281269-79281288 | None:intergenic | 35.0% | |
| TCTTACAAGATTGTCAGCTA+TGG | + | chr5.3:79281848-79281867 | MS.gene38166:CDS | 35.0% | |
| TTGTAAGAAGACGAACTATC+TGG | - | chr5.3:79281836-79281855 | None:intergenic | 35.0% | |
| ! | CCTTCAATCCACAAAAGTTT+TGG | + | chr5.3:79281331-79281350 | MS.gene38166:CDS | 35.0% |
| ! | GCTTTGAGTTTGGATAAAGA+AGG | - | chr5.3:79281443-79281462 | None:intergenic | 35.0% |
| !! | AATCTCATCAGCTTTGAGTT+TGG | - | chr5.3:79281453-79281472 | None:intergenic | 35.0% |
| !! | CCAAAACTTTTGTGGATTGA+AGG | - | chr5.3:79281334-79281353 | None:intergenic | 35.0% |
| AACCAAATGTTGCCAACACA+AGG | - | chr5.3:79281886-79281905 | None:intergenic | 40.0% | |
| AATGTGGCAAAGCATGGAAA+AGG | - | chr5.3:79281487-79281506 | None:intergenic | 40.0% | |
| ACTGAATTACTCACTGTTGC+TGG | + | chr5.3:79281284-79281303 | MS.gene38166:CDS | 40.0% | |
| AGGTTTCTTCAATGATGCGA+AGG | - | chr5.3:79281423-79281442 | None:intergenic | 40.0% | |
| CAACAGTGAGTAATTCAGTG+AGG | - | chr5.3:79281283-79281302 | None:intergenic | 40.0% | |
| CAAGCAAACAACACTGAAGA+AGG | + | chr5.3:79281368-79281387 | MS.gene38166:CDS | 40.0% | |
| GAACTATCTGGTGAAGATGA+AGG | - | chr5.3:79281824-79281843 | None:intergenic | 40.0% | |
| TTCAGGATGGTCAATCACTA+AGG | + | chr5.3:79281619-79281638 | MS.gene38166:CDS | 40.0% | |
| TTGCTTCCTGAGGCAATATT+TGG | + | chr5.3:79281698-79281717 | MS.gene38166:CDS | 40.0% | |
| ! | AACCTTGTGTTGGCAACATT+TGG | + | chr5.3:79281881-79281900 | MS.gene38166:CDS | 40.0% |
| ! | GAACGTGTCCAAAACTTTTG+TGG | - | chr5.3:79281342-79281361 | None:intergenic | 40.0% |
| ! | TGATAAGGTTTTGCTTCCTG+AGG | + | chr5.3:79281688-79281707 | MS.gene38166:CDS | 40.0% |
| !! | CTTCTTCAGTGTTGTTTGCT+TGG | - | chr5.3:79281370-79281389 | None:intergenic | 40.0% |
| !! | GTTGGCAACATTTGGTTTGT+TGG | + | chr5.3:79281889-79281908 | MS.gene38166:CDS | 40.0% |
| !!! | CAGTGTTGTTTGCTTGGTTT+TGG | - | chr5.3:79281364-79281383 | None:intergenic | 40.0% |
| ACAAAATCTGGTGTAGGTGC+TGG | - | chr5.3:79281257-79281276 | None:intergenic | 45.0% | |
| ATGTTGGAGTTGAGGCAGTT+TGG | - | chr5.3:79281541-79281560 | None:intergenic | 45.0% | |
| CACTGATATTCCACCTGTTC+CGG | + | chr5.3:79281721-79281740 | MS.gene38166:CDS | 45.0% | |
| TAATCACCACCGGCAAATGT+TGG | - | chr5.3:79281557-79281576 | None:intergenic | 45.0% | |
| TCAGTGCCAAATATTGCCTC+AGG | - | chr5.3:79281707-79281726 | None:intergenic | 45.0% | |
| ! | AATTTGGGGCAACCTTGTGT+TGG | + | chr5.3:79281871-79281890 | MS.gene38166:CDS | 45.0% |
| ! | GATGCGAAGGAACTGTCTTT+TGG | - | chr5.3:79281410-79281429 | None:intergenic | 45.0% |
| ! | TCTGTTGCTTCTGAGCTCAT+CGG | + | chr5.3:79281172-79281191 | MS.gene38166:CDS | 45.0% |
| !! | GGCAACATTTGGTTTGTTGG+TGG | + | chr5.3:79281892-79281911 | MS.gene38166:CDS | 45.0% |
| ACCGGCAAATGTTGGAGTTG+AGG | - | chr5.3:79281549-79281568 | None:intergenic | 50.0% | |
| GAGTTGAGGCAGTTTGGCTA+AGG | - | chr5.3:79281535-79281554 | None:intergenic | 50.0% | |
| GCCTCAACTCCAACATTTGC+CGG | + | chr5.3:79281545-79281564 | MS.gene38166:CDS | 50.0% | |
| TCAACTCCAACATTTGCCGG+TGG | + | chr5.3:79281548-79281567 | MS.gene38166:CDS | 50.0% | |
| ! | ACGATTTGCTCCCAGCACTT+TGG | - | chr5.3:79281796-79281815 | None:intergenic | 50.0% |
| !! | AGAGGGTGGACTTACGGTTT+TGG | - | chr5.3:79281204-79281223 | None:intergenic | 50.0% |
| GCAACAGAGTGCAGCTCACA+AGG | - | chr5.3:79281160-79281179 | None:intergenic | 55.0% | |
| GCAATATCTGGTGTGGGTGC+AGG | - | chr5.3:79281749-79281768 | None:intergenic | 55.0% | |
| GCAGGCGCAATATCTGGTGT+GGG | - | chr5.3:79281755-79281774 | None:intergenic | 55.0% | |
| TCAGCTGCAGGCGCAATATC+TGG | - | chr5.3:79281761-79281780 | None:intergenic | 55.0% | |
| TCAGCTGGAGAATCAGCTGC+AGG | - | chr5.3:79281773-79281792 | None:intergenic | 55.0% | |
| TCTCCAGCTGACCAAAGTGC+TGG | + | chr5.3:79281782-79281801 | MS.gene38166:CDS | 55.0% | |
| TGCAGGCGCAATATCTGGTG+TGG | - | chr5.3:79281756-79281775 | None:intergenic | 55.0% | |
| ! | CTCCAGCTGACCAAAGTGCT+GGG | + | chr5.3:79281783-79281802 | MS.gene38166:CDS | 55.0% |
| CTCCCAGCACTTTGGTCAGC+TGG | - | chr5.3:79281788-79281807 | None:intergenic | 60.0% | |
| TGGAGCCGGAGTTGGACTCT+CGG | - | chr5.3:79281231-79281250 | None:intergenic | 60.0% | |
| !! | TCTGGTGTAGGTGCTGGTGC+TGG | - | chr5.3:79281251-79281270 | None:intergenic | 60.0% |
| AGCCGGAGTTGGACTCTCGG+GGG | - | chr5.3:79281228-79281247 | None:intergenic | 65.0% | |
| AGTTGGACTCTCGGGGGGAG+AGG | - | chr5.3:79281222-79281241 | None:intergenic | 65.0% | |
| GAGCCGGAGTTGGACTCTCG+GGG | - | chr5.3:79281229-79281248 | None:intergenic | 65.0% | |
| GGAGCCGGAGTTGGACTCTC+GGG | - | chr5.3:79281230-79281249 | None:intergenic | 65.0% | |
| GTTGGACTCTCGGGGGGAGA+GGG | - | chr5.3:79281221-79281240 | None:intergenic | 65.0% | |
| TCCCCCCGAGAGTCCAACTC+CGG | + | chr5.3:79281223-79281242 | MS.gene38166:CDS | 65.0% | |
| TCTGGTGTGGGTGCAGGAGC+CGG | - | chr5.3:79281743-79281762 | None:intergenic | 65.0% | |
| ! | GGGGGGAGAGGGTGGACTTA+CGG | - | chr5.3:79281210-79281229 | None:intergenic | 65.0% |
| !! | GTAGGTGCTGGTGCTGGAGC+CGG | - | chr5.3:79281245-79281264 | None:intergenic | 65.0% |
| GCCGGAGTTGGACTCTCGGG+GGG | - | chr5.3:79281227-79281246 | None:intergenic | 70.0% | |
| GGTGCAGGAGCCGGAACAGG+TGG | - | chr5.3:79281734-79281753 | None:intergenic | 70.0% | |
| GTGGGTGCAGGAGCCGGAAC+AGG | - | chr5.3:79281737-79281756 | None:intergenic | 70.0% | |
| ! | GCTGGTGCTGGAGCCGGAGT+TGG | - | chr5.3:79281239-79281258 | None:intergenic | 70.0% |
| GGACTCTCGGGGGGAGAGGG+TGG | - | chr5.3:79281218-79281237 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 79281137 | 79281925 | 79281137 | ID=MS.gene38166 |
| chr5.3 | mRNA | 79281137 | 79281925 | 79281137 | ID=MS.gene38166.t1;Parent=MS.gene38166 |
| chr5.3 | exon | 79281137 | 79281925 | 79281137 | ID=MS.gene38166.t1.exon1;Parent=MS.gene38166.t1 |
| chr5.3 | CDS | 79281137 | 79281925 | 79281137 | ID=cds.MS.gene38166.t1;Parent=MS.gene38166.t1 |
| Gene Sequence |
| Protein sequence |
