Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38531.t1 | XP_013460360.1 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 2.60E-117 | 431.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38531.t1 | Q96S44 | 49.1 | 220 | 109 | 2 | 10 | 226 | 34 | 253 | 8.2e-48 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38531.t1 | I3SWE5 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 1.9e-117 | 431.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045570 | MS.gene38531 | PPI |
| MS.gene28183 | MS.gene38531 | PPI |
| MS.gene38531 | MS.gene70283 | PPI |
| MS.gene38531 | MS.gene58159 | PPI |
| MS.gene38531 | MS.gene70282 | PPI |
| MS.gene58136 | MS.gene38531 | PPI |
| MS.gene58134 | MS.gene38531 | PPI |
| MS.gene01984 | MS.gene38531 | PPI |
| MS.gene030686 | MS.gene38531 | PPI |
| MS.gene38531 | MS.gene70303 | PPI |
| MS.gene38531 | MS.gene003175 | PPI |
| MS.gene28454 | MS.gene38531 | PPI |
| MS.gene030685 | MS.gene38531 | PPI |
| MS.gene048301 | MS.gene38531 | PPI |
| MS.gene02854 | MS.gene38531 | PPI |
| MS.gene030707 | MS.gene38531 | PPI |
| MS.gene031682 | MS.gene38531 | PPI |
| MS.gene28161 | MS.gene38531 | PPI |
| MS.gene006626 | MS.gene38531 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38531.t1 | MTR_3g465790 | 96.903 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 6.10e-165 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38531.t1 | AT5G26110 | 78.761 | 226 | 48 | 0 | 1 | 226 | 1 | 226 | 2.81e-134 | 377 |
| MS.gene38531.t1 | AT5G26110 | 78.761 | 226 | 48 | 0 | 1 | 226 | 1 | 226 | 2.81e-134 | 377 |
| MS.gene38531.t1 | AT5G26110 | 79.012 | 162 | 34 | 0 | 65 | 226 | 2 | 163 | 5.57e-95 | 275 |
| MS.gene38531.t1 | AT1G08120 | 73.684 | 57 | 15 | 0 | 1 | 57 | 5 | 61 | 1.97e-22 | 87.8 |
Find 43 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTACAGACATCCGATTT+TGG | 0.315543 | 3.4:-61499401 | MS.gene38531:CDS |
| AAAGATGTATTTCTTGAATT+CGG | 0.327087 | 3.4:-61498836 | MS.gene38531:CDS |
| CACGATGGTGGTCTTGTTCA+TGG | 0.374963 | 3.4:-61498743 | MS.gene38531:CDS |
| GGCAAGATTGCATCTCAAAT+TGG | 0.384705 | 3.4:-61498785 | MS.gene38531:CDS |
| CAACCAAGGCAAGGCGACTT+GGG | 0.419060 | 3.4:-61498937 | MS.gene38531:CDS |
| ACCACTGCTTCGATGATTTG+CGG | 0.435224 | 3.4:+61497631 | None:intergenic |
| GTGTAGGTTCTTATTGACTT+TGG | 0.438221 | 3.4:-61498563 | MS.gene38531:intron |
| ACAACCAAGGCAAGGCGACT+TGG | 0.438223 | 3.4:-61498938 | MS.gene38531:CDS |
| GTCAACTTAGCATCCAAAAT+CGG | 0.456518 | 3.4:+61499388 | None:intergenic |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3.4:+61498518 | None:intergenic |
| AACCCCAAGTCGCCTTGCCT+TGG | 0.476565 | 3.4:+61498934 | None:intergenic |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3.4:-61498693 | MS.gene38531:intron |
| TTAACATTTGAATTTGTCGA+TGG | 0.536270 | 3.4:-61498869 | MS.gene38531:CDS |
| TACCCCTGTGTTATATGCTG+TGG | 0.540309 | 3.4:-61498909 | MS.gene38531:CDS |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3.4:-61498473 | MS.gene38531:CDS |
| AGAAATACATCTTTGACTGA+AGG | 0.543009 | 3.4:+61498845 | None:intergenic |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3.4:+61498477 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3.4:+61497605 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3.4:+61498505 | None:intergenic |
| AATGTTAAAGTGTGCAACAC+AGG | 0.565875 | 3.4:+61498884 | None:intergenic |
| TTTCTTGAATTCGGATCATG+TGG | 0.569490 | 3.4:-61498827 | MS.gene38531:CDS |
| GGACGAAAGAGGACCATGGT+TGG | 0.570787 | 3.4:-61497487 | MS.gene38531:CDS |
| GGCATCAATGAAGAGCGGTT+AGG | 0.593530 | 3.4:-61498806 | MS.gene38531:CDS |
| CGAGGTGCACAACCAAGGCA+AGG | 0.594894 | 3.4:-61498946 | MS.gene38531:CDS |
| AACCAAGGCAAGGCGACTTG+GGG | 0.602601 | 3.4:-61498936 | MS.gene38531:CDS |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3.4:-61497498 | MS.gene38531:CDS |
| TTGTTTGATGAGAATGAGAG+AGG | 0.606756 | 3.4:+61499890 | None:intergenic |
| GGATCCACAGCATATAACAC+AGG | 0.609862 | 3.4:+61498905 | None:intergenic |
| ACCGCAAATCATCGAAGCAG+TGG | 0.617260 | 3.4:-61497632 | MS.gene38531:CDS |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3.4:+61498478 | None:intergenic |
| GGAGGCGAGGTGCACAACCA+AGG | 0.637554 | 3.4:-61498951 | MS.gene38531:CDS |
| CAAATTGTAGTGCGACAAAG+AGG | 0.641363 | 3.4:-61497508 | MS.gene38531:intron |
| GATCCACAGCATATAACACA+GGG | 0.645198 | 3.4:+61498906 | None:intergenic |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3.4:-61497603 | MS.gene38531:intron |
| ATTGCAAAGTTACACGATGG+TGG | 0.654578 | 3.4:-61498755 | MS.gene38531:CDS |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3.4:-61498465 | MS.gene38531:intron |
| TCTCTCATTCTCATCAAACA+AGG | 0.656080 | 3.4:-61499888 | MS.gene38531:CDS |
| GACACTCAAGCGCTTAAATG+CGG | 0.662510 | 3.4:-61499368 | MS.gene38531:intron |
| AACTCAGAATCATCCAACCA+TGG | 0.691341 | 3.4:+61497474 | None:intergenic |
| CATGTGGCATCAATGAAGAG+CGG | 0.710732 | 3.4:-61498811 | MS.gene38531:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3.4:-61497491 | MS.gene38531:CDS |
| GTAATTGCAAAGTTACACGA+TGG | 0.807657 | 3.4:-61498758 | MS.gene38531:CDS |
| ATCCACAGCATATAACACAG+GGG | 0.823142 | 3.4:+61498907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATTACATTTACTT+AGG | - | chr3.4:61498762-61498781 | MS.gene38531:CDS | 10.0% |
| !!! | TTAATTTAAAATTGATTCAT+GGG | - | chr3.4:61497647-61497666 | MS.gene38531:CDS | 10.0% |
| !!! | TTTTTATATTTGATTAAGTT+TGG | - | chr3.4:61498082-61498101 | MS.gene38531:intron | 10.0% |
| !! | AAATTCTAATAGTATAAAAC+AGG | + | chr3.4:61499203-61499222 | None:intergenic | 15.0% |
| !! | TTATATATACAGGTAAATAA+GGG | + | chr3.4:61499585-61499604 | None:intergenic | 15.0% |
| !!! | AAAGTTGATTTTTTACATAA+TGG | + | chr3.4:61497599-61497618 | None:intergenic | 15.0% |
| !!! | AAGTTGATTTTTTACATAAT+GGG | + | chr3.4:61497598-61497617 | None:intergenic | 15.0% |
| !!! | ATTTTAAATATCAATACCAT+GGG | - | chr3.4:61499317-61499336 | MS.gene38531:intron | 15.0% |
| !!! | GAATCAATTTTAAATTAACA+AGG | + | chr3.4:61497645-61497664 | None:intergenic | 15.0% |
| !!! | GTTAATTTAAAATTGATTCA+TGG | - | chr3.4:61497646-61497665 | MS.gene38531:CDS | 15.0% |
| !! | AAAGATGTATTTCTTGAATT+CGG | - | chr3.4:61498565-61498584 | MS.gene38531:intron | 20.0% |
| !! | CAATACTAACAAATATTAGA+TGG | + | chr3.4:61499833-61499852 | None:intergenic | 20.0% |
| !! | GCAATAAAGACTATTTATAT+TGG | - | chr3.4:61499357-61499376 | MS.gene38531:intron | 20.0% |
| !! | GTTATATATACAGGTAAATA+AGG | + | chr3.4:61499586-61499605 | None:intergenic | 20.0% |
| !! | TAAGTTTAATTCACACTTAT+TGG | - | chr3.4:61497547-61497566 | MS.gene38531:intron | 20.0% |
| !! | TATTCAACACTATAACAATT+AGG | + | chr3.4:61498990-61499009 | None:intergenic | 20.0% |
| !! | TCACAAATAGTAAAAAATAG+CGG | + | chr3.4:61497841-61497860 | None:intergenic | 20.0% |
| !! | TTTAACAATAGATAATGCAA+AGG | - | chr3.4:61499619-61499638 | MS.gene38531:intron | 20.0% |
| !!! | ATTATTTTCATAAGCTATCT+TGG | - | chr3.4:61498231-61498250 | MS.gene38531:intron | 20.0% |
| !!! | ATTTGACTTTCTTTTATCTT+TGG | + | chr3.4:61498191-61498210 | None:intergenic | 20.0% |
| !!! | CATAATAATAAGAGTTTGTT+TGG | + | chr3.4:61498362-61498381 | None:intergenic | 20.0% |
| !!! | GATTTTAAATATCAATACCA+TGG | - | chr3.4:61499316-61499335 | MS.gene38531:intron | 20.0% |
| !!! | TAAATAGTCTTTATTGCTTT+TGG | + | chr3.4:61499354-61499373 | None:intergenic | 20.0% |
| ! | AAAATGCAATCAAGTTCATT+TGG | + | chr3.4:61499438-61499457 | None:intergenic | 25.0% |
| ! | AAAGTGACATATAATATGAG+AGG | + | chr3.4:61499491-61499510 | None:intergenic | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | + | chr3.4:61499490-61499509 | None:intergenic | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | + | chr3.4:61499570-61499589 | None:intergenic | 25.0% |
| ! | AATACCTTCTTGATATTCTA+GGG | + | chr3.4:61499542-61499561 | None:intergenic | 25.0% |
| ! | AATACTAAGGATATAACAAC+AGG | - | chr3.4:61499006-61499025 | MS.gene38531:intron | 25.0% |
| ! | ATACTAAGGATATAACAACA+GGG | - | chr3.4:61499007-61499026 | MS.gene38531:intron | 25.0% |
| ! | ATTGATTATTGAAATCTGTC+TGG | - | chr3.4:61499720-61499739 | MS.gene38531:intron | 25.0% |
| ! | CTACAATTTGTGAAAATGTA+CGG | + | chr3.4:61499883-61499902 | None:intergenic | 25.0% |
| ! | TAATACCTTCTTGATATTCT+AGG | + | chr3.4:61499543-61499562 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | - | chr3.4:61497779-61497798 | MS.gene38531:intron | 25.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | - | chr3.4:61498532-61498551 | MS.gene38531:CDS | 25.0% |
| !! | CTATCCTCTTAATGATTTTT+GGG | + | chr3.4:61499164-61499183 | None:intergenic | 25.0% |
| !! | TCTATCCTCTTAATGATTTT+TGG | + | chr3.4:61499165-61499184 | None:intergenic | 25.0% |
| !! | TGTTATAGTGTTGAATACTA+AGG | - | chr3.4:61498993-61499012 | MS.gene38531:intron | 25.0% |
| !! | TTTCGTCTTGTTATATATAC+AGG | + | chr3.4:61499595-61499614 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTATCTGACA+AGG | - | chr3.4:61499448-61499467 | MS.gene38531:CDS | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | + | chr3.4:61498899-61498918 | None:intergenic | 25.0% |
| AAAGAATGATACTGATCAGT+TGG | - | chr3.4:61498708-61498727 | MS.gene38531:CDS | 30.0% | |
| AAAGTTTCAGTCTTTCATTG+TGG | - | chr3.4:61497678-61497697 | MS.gene38531:intron | 30.0% | |
| ACTATAACAATTAGGACTAC+TGG | + | chr3.4:61498982-61499001 | None:intergenic | 30.0% | |
| AGAAATACATCTTTGACTGA+AGG | + | chr3.4:61498559-61498578 | None:intergenic | 30.0% | |
| ATATCCCTAGAATATCAAGA+AGG | - | chr3.4:61499535-61499554 | MS.gene38531:intron | 30.0% | |
| ATCAAGTTCATTTGGTACAT+AGG | + | chr3.4:61499430-61499449 | None:intergenic | 30.0% | |
| CTATAACAATTAGGACTACT+GGG | + | chr3.4:61498981-61499000 | None:intergenic | 30.0% | |
| CTATTTGTGATTGACAATAC+TGG | - | chr3.4:61497851-61497870 | MS.gene38531:intron | 30.0% | |
| TCAACCCAAAAATCATTAAG+AGG | - | chr3.4:61499157-61499176 | MS.gene38531:intron | 30.0% | |
| TGTATATAGTTGTGTCTGAT+TGG | - | chr3.4:61498386-61498405 | MS.gene38531:intron | 30.0% | |
| TTATATTCGAGTGTATCTAG+TGG | + | chr3.4:61498333-61498352 | None:intergenic | 30.0% | |
| TTTGTGAACTTGAAGGAAAT+TGG | - | chr3.4:61497875-61497894 | MS.gene38531:intron | 30.0% | |
| ! | AAGCTATCTTGGATAGATTT+TGG | - | chr3.4:61498242-61498261 | MS.gene38531:intron | 30.0% |
| ! | ATCATCAGCTTTAGTACAAA+TGG | + | chr3.4:61499299-61499318 | None:intergenic | 30.0% |
| ! | TTCATTGTGGTAATGTTGTT+AGG | - | chr3.4:61497691-61497710 | MS.gene38531:intron | 30.0% |
| !! | TTTTATAGTTTGTGCACTCA+AGG | - | chr3.4:61499220-61499239 | MS.gene38531:intron | 30.0% |
| !!! | ATTTTAGTTCTCCAAGTTCA+AGG | - | chr3.4:61499073-61499092 | MS.gene38531:intron | 30.0% |
| !!! | GTTTTTGAGACTTCTTTTGT+GGG | - | chr3.4:61497944-61497963 | MS.gene38531:intron | 30.0% |
| AAAGTGTAAGACCTTGAACT+TGG | + | chr3.4:61499087-61499106 | None:intergenic | 35.0% | |
| AATGTTAAAGTGTGCAACAC+AGG | + | chr3.4:61498520-61498539 | None:intergenic | 35.0% | |
| AGTTCATTTGGTACATAGGA+AGG | + | chr3.4:61499426-61499445 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | + | chr3.4:61498927-61498946 | None:intergenic | 35.0% | |
| CAATTTGTGAAAATGTACGG+AGG | + | chr3.4:61499880-61499899 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | + | chr3.4:61499486-61499505 | None:intergenic | 35.0% | |
| GTAATTGCAAAGTTACACGA+TGG | - | chr3.4:61498643-61498662 | MS.gene38531:intron | 35.0% | |
| GTCAACTTAGCATCCAAAAT+CGG | + | chr3.4:61498016-61498035 | None:intergenic | 35.0% | |
| TCTACACAAAAGTTGAAGGA+AGG | + | chr3.4:61499110-61499129 | None:intergenic | 35.0% | |
| TCTCTCATTCTCATCAAACA+AGG | - | chr3.4:61497513-61497532 | MS.gene38531:intron | 35.0% | |
| TGAAGAATGCATCGAAACAA+GGG | + | chr3.4:61498926-61498945 | None:intergenic | 35.0% | |
| TTGAAATCTGTCTGGATAGA+TGG | - | chr3.4:61499728-61499747 | MS.gene38531:intron | 35.0% | |
| TTGTTTGATGAGAATGAGAG+AGG | + | chr3.4:61497514-61497533 | None:intergenic | 35.0% | |
| TTTCTTGAATTCGGATCATG+TGG | - | chr3.4:61498574-61498593 | MS.gene38531:intron | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | - | chr3.4:61498822-61498841 | MS.gene38531:CDS | 35.0% |
| ! | GCGTAACTGTTGGTTAATAA+TGG | + | chr3.4:61499404-61499423 | None:intergenic | 35.0% |
| ! | TTCCTTCAACTTTTGTGTAG+AGG | - | chr3.4:61499109-61499128 | MS.gene38531:intron | 35.0% |
| ! | TTGTTCTGCCAATTGGATTT+TGG | - | chr3.4:61498423-61498442 | MS.gene38531:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | - | chr3.4:61498838-61498857 | MS.gene38531:CDS | 35.0% |
| !! | TGATTAAGTTTGGCTCTGTT+TGG | - | chr3.4:61498092-61498111 | MS.gene38531:intron | 35.0% |
| !! | TGTCTTCTTGTTGTTGTAGA+GGG | - | chr3.4:61497922-61497941 | MS.gene38531:intron | 35.0% |
| !! | TTGTCTTCTTGTTGTTGTAG+AGG | - | chr3.4:61497921-61497940 | MS.gene38531:intron | 35.0% |
| !!! | GGTTTTTGAGACTTCTTTTG+TGG | - | chr3.4:61497943-61497962 | MS.gene38531:intron | 35.0% |
| !!! | TACTGGTTTTGTGAACTTGA+AGG | - | chr3.4:61497868-61497887 | MS.gene38531:intron | 35.0% |
| ACAATGAACAAGCTTGCAGA+CGG | - | chr3.4:61499798-61499817 | MS.gene38531:intron | 40.0% | |
| AGCCTCTACACAAAAGTTGA+AGG | + | chr3.4:61499114-61499133 | None:intergenic | 40.0% | |
| ATCCACAGCATATAACACAG+GGG | + | chr3.4:61498497-61498516 | None:intergenic | 40.0% | |
| ATTGCAAAGTTACACGATGG+TGG | - | chr3.4:61498646-61498665 | MS.gene38531:intron | 40.0% | |
| CAAATTGTAGTGCGACAAAG+AGG | - | chr3.4:61499893-61499912 | MS.gene38531:CDS | 40.0% | |
| CAATACCATGGGATGTATAC+AGG | - | chr3.4:61499328-61499347 | MS.gene38531:intron | 40.0% | |
| CTACTGGGAAAATGAGAAGT+TGG | + | chr3.4:61498966-61498985 | None:intergenic | 40.0% | |
| CTCCTACTCCAAAATCCAAT+TGG | + | chr3.4:61498434-61498453 | None:intergenic | 40.0% | |
| GATCCACAGCATATAACACA+GGG | + | chr3.4:61498498-61498517 | None:intergenic | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | - | chr3.4:61498616-61498635 | MS.gene38531:intron | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | - | chr3.4:61498729-61498748 | MS.gene38531:CDS | 40.0% | |
| GTTTCGATGCATTCTTCATG+TGG | - | chr3.4:61498928-61498947 | MS.gene38531:CDS | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | + | chr3.4:61498886-61498905 | None:intergenic | 40.0% |
| ! | AGACTTCTTTTGTGGGAAGA+AGG | - | chr3.4:61497951-61497970 | MS.gene38531:intron | 40.0% |
| ! | AGGGTCTTATCTGTCTGTTA+TGG | - | chr3.4:61499026-61499045 | MS.gene38531:intron | 40.0% |
| ! | GAAGTACAGACATCCGATTT+TGG | - | chr3.4:61498000-61498019 | MS.gene38531:intron | 40.0% |
| ! | GAATGCTTTGTTCTGCCAAT+TGG | - | chr3.4:61498416-61498435 | MS.gene38531:intron | 40.0% |
| ! | GCATTCTTCATGTGGTAATG+TGG | - | chr3.4:61498936-61498955 | MS.gene38531:CDS | 40.0% |
| !!! | CAATTGGATTTTGGAGTAGG+AGG | - | chr3.4:61498432-61498451 | MS.gene38531:intron | 40.0% |
| !!! | TGCCAATTGGATTTTGGAGT+AGG | - | chr3.4:61498429-61498448 | MS.gene38531:intron | 40.0% |
| ACCACTGCTTCGATGATTTG+CGG | + | chr3.4:61499773-61499792 | None:intergenic | 45.0% | |
| CATGTGGCATCAATGAAGAG+CGG | - | chr3.4:61498590-61498609 | MS.gene38531:intron | 45.0% | |
| GACACTCAAGCGCTTAAATG+CGG | - | chr3.4:61498033-61498052 | MS.gene38531:intron | 45.0% | |
| GCTATCACAAACAGTCTCAC+AGG | - | chr3.4:61498299-61498318 | MS.gene38531:intron | 45.0% | |
| GGAAATTGGATCTGCGCTTA+TGG | - | chr3.4:61497889-61497908 | MS.gene38531:intron | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | + | chr3.4:61498499-61498518 | None:intergenic | 45.0% | |
| GTTGTCAAATAGCGGCATTG+TGG | - | chr3.4:61497787-61497806 | MS.gene38531:intron | 45.0% | |
| TACCCCTGTGTTATATGCTG+TGG | - | chr3.4:61498492-61498511 | MS.gene38531:CDS | 45.0% | |
| TCAAGCGCTTAAATGCGGTA+CGG | - | chr3.4:61498038-61498057 | MS.gene38531:intron | 45.0% | |
| TTTGGCCTGTATACATCCCA+TGG | + | chr3.4:61499336-61499355 | None:intergenic | 45.0% | |
| ! | ACATAGGAAGGCGTAACTGT+TGG | + | chr3.4:61499414-61499433 | None:intergenic | 45.0% |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | + | chr3.4:61499799-61499818 | None:intergenic | 45.0% |
| AAGAGGACGAAAGAGGACCA+TGG | - | chr3.4:61499910-61499929 | MS.gene38531:CDS | 50.0% | |
| ACCGCAAATCATCGAAGCAG+TGG | - | chr3.4:61499769-61499788 | MS.gene38531:intron | 50.0% | |
| GGCATCAATGAAGAGCGGTT+AGG | - | chr3.4:61498595-61498614 | MS.gene38531:intron | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | - | chr3.4:61499903-61499922 | MS.gene38531:CDS | 50.0% | |
| !! | CACGATGGTGGTCTTGTTCA+TGG | - | chr3.4:61498658-61498677 | MS.gene38531:intron | 50.0% |
| AACCAAGGCAAGGCGACTTG+GGG | - | chr3.4:61498465-61498484 | MS.gene38531:intron | 55.0% | |
| ACAACCAAGGCAAGGCGACT+TGG | - | chr3.4:61498463-61498482 | MS.gene38531:intron | 55.0% | |
| CAACCAAGGCAAGGCGACTT+GGG | - | chr3.4:61498464-61498483 | MS.gene38531:intron | 55.0% | |
| GGACGAAAGAGGACCATGGT+TGG | - | chr3.4:61499914-61499933 | MS.gene38531:CDS | 55.0% | |
| !!! | GGATTTTGGAGTAGGAGGCG+AGG | - | chr3.4:61498437-61498456 | MS.gene38531:intron | 55.0% |
| AACCCCAAGTCGCCTTGCCT+TGG | + | chr3.4:61498470-61498489 | None:intergenic | 60.0% | |
| CGAGGTGCACAACCAAGGCA+AGG | - | chr3.4:61498455-61498474 | MS.gene38531:intron | 60.0% | |
| GGAGGCGAGGTGCACAACCA+AGG | - | chr3.4:61498450-61498469 | MS.gene38531:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 61497483 | 61499940 | 61497483 | ID=MS.gene38531 |
| chr3.4 | mRNA | 61497483 | 61499940 | 61497483 | ID=MS.gene38531.t1;Parent=MS.gene38531 |
| chr3.4 | exon | 61499878 | 61499940 | 61499878 | ID=MS.gene38531.t1.exon1;Parent=MS.gene38531.t1 |
| chr3.4 | CDS | 61499878 | 61499940 | 61499878 | ID=cds.MS.gene38531.t1;Parent=MS.gene38531.t1 |
| chr3.4 | exon | 61499369 | 61499482 | 61499369 | ID=MS.gene38531.t1.exon2;Parent=MS.gene38531.t1 |
| chr3.4 | CDS | 61499369 | 61499482 | 61499369 | ID=cds.MS.gene38531.t1;Parent=MS.gene38531.t1 |
| chr3.4 | exon | 61498694 | 61498972 | 61498694 | ID=MS.gene38531.t1.exon3;Parent=MS.gene38531.t1 |
| chr3.4 | CDS | 61498694 | 61498972 | 61498694 | ID=cds.MS.gene38531.t1;Parent=MS.gene38531.t1 |
| chr3.4 | exon | 61498466 | 61498579 | 61498466 | ID=MS.gene38531.t1.exon4;Parent=MS.gene38531.t1 |
| chr3.4 | CDS | 61498466 | 61498579 | 61498466 | ID=cds.MS.gene38531.t1;Parent=MS.gene38531.t1 |
| chr3.4 | exon | 61497604 | 61497676 | 61497604 | ID=MS.gene38531.t1.exon5;Parent=MS.gene38531.t1 |
| chr3.4 | CDS | 61497604 | 61497676 | 61497604 | ID=cds.MS.gene38531.t1;Parent=MS.gene38531.t1 |
| chr3.4 | exon | 61497483 | 61497520 | 61497483 | ID=MS.gene38531.t1.exon6;Parent=MS.gene38531.t1 |
| chr3.4 | CDS | 61497483 | 61497520 | 61497483 | ID=cds.MS.gene38531.t1;Parent=MS.gene38531.t1 |
| Gene Sequence |
| Protein sequence |
