Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38542.t1 | XP_003599279.2 | 93.6 | 628 | 40 | 0 | 1 | 628 | 1 | 628 | 0.00E+00 | 1143.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38542.t1 | Q9FGH9 | 67.6 | 632 | 180 | 7 | 1 | 620 | 1 | 619 | 1.1e-235 | 817.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38542.t1 | G7IWW7 | 93.6 | 628 | 40 | 0 | 1 | 628 | 1 | 628 | 0.0e+00 | 1143.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene38542 | 0.825604 | 4.28E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene38542 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene04998 | MS.gene38542 | 0.800844 | 1.19E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene38542 | 0.830756 | 2.46E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene38542 | 0.817218 | 3.70E-52 | -1.69E-46 |
| MS.gene051226 | MS.gene38542 | 0.821778 | 3.37E-53 | -1.69E-46 |
| MS.gene051821 | MS.gene38542 | 0.813215 | 2.87E-51 | -1.69E-46 |
| MS.gene051823 | MS.gene38542 | 0.841956 | 3.47E-58 | -1.69E-46 |
| MS.gene052016 | MS.gene38542 | 0.884138 | 2.48E-71 | -1.69E-46 |
| MS.gene053215 | MS.gene38542 | 0.824228 | 9.04E-54 | -1.69E-46 |
| MS.gene053620 | MS.gene38542 | 0.809754 | 1.62E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene38542 | 0.835898 | 1.28E-56 | -1.69E-46 |
| MS.gene054178 | MS.gene38542 | 0.833592 | 4.88E-56 | -1.69E-46 |
| MS.gene054892 | MS.gene38542 | 0.888274 | 6.83E-73 | -1.69E-46 |
| MS.gene054893 | MS.gene38542 | 0.889122 | 3.21E-73 | -1.69E-46 |
| MS.gene056973 | MS.gene38542 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene38542 | 0.819636 | 1.05E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene38542 | 0.829926 | 3.92E-55 | -1.69E-46 |
| MS.gene057919 | MS.gene38542 | 0.806819 | 6.83E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene38542 | 0.842392 | 2.66E-58 | -1.69E-46 |
| MS.gene060259 | MS.gene38542 | 0.851768 | 7.16E-61 | -1.69E-46 |
| MS.gene060413 | MS.gene38542 | 0.817433 | 3.31E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene38542 | 0.802631 | 5.12E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene38542 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene38542 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene38542 | 0.808633 | 2.81E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene38542 | 0.805294 | 1.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38542.t1 | MTR_3g031130 | 97.134 | 628 | 18 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1254 |
| MS.gene38542.t1 | MTR_5g073450 | 70.108 | 649 | 166 | 6 | 1 | 628 | 1 | 642 | 0.0 | 891 |
| MS.gene38542.t1 | MTR_5g073460 | 61.659 | 446 | 159 | 4 | 188 | 624 | 255 | 697 | 0.0 | 538 |
| MS.gene38542.t1 | MTR_5g073480 | 50.348 | 431 | 156 | 5 | 184 | 613 | 252 | 625 | 5.58e-129 | 393 |
| MS.gene38542.t1 | MTR_8g021330 | 39.912 | 456 | 254 | 6 | 191 | 628 | 161 | 614 | 1.37e-115 | 358 |
| MS.gene38542.t1 | MTR_4g103540 | 35.008 | 657 | 377 | 13 | 6 | 620 | 33 | 681 | 4.26e-115 | 359 |
| MS.gene38542.t1 | MTR_5g073620 | 56.509 | 338 | 124 | 3 | 183 | 518 | 279 | 595 | 1.86e-114 | 367 |
| MS.gene38542.t1 | MTR_5g073620 | 37.209 | 258 | 133 | 4 | 371 | 620 | 833 | 1069 | 2.88e-40 | 158 |
| MS.gene38542.t1 | MTR_6g033310 | 38.095 | 525 | 282 | 8 | 118 | 620 | 223 | 726 | 1.03e-111 | 352 |
| MS.gene38542.t1 | MTR_7g026630 | 38.113 | 530 | 297 | 13 | 118 | 628 | 142 | 659 | 1.28e-105 | 333 |
| MS.gene38542.t1 | MTR_7g013770 | 33.284 | 670 | 374 | 14 | 6 | 620 | 16 | 667 | 7.46e-105 | 332 |
| MS.gene38542.t1 | MTR_5g074130 | 44.156 | 462 | 220 | 12 | 170 | 617 | 236 | 673 | 2.13e-103 | 330 |
| MS.gene38542.t1 | MTR_1g057560 | 30.806 | 633 | 386 | 9 | 24 | 627 | 24 | 633 | 3.27e-98 | 313 |
| MS.gene38542.t1 | MTR_1g090620 | 31.279 | 649 | 381 | 10 | 22 | 627 | 23 | 649 | 4.85e-98 | 313 |
| MS.gene38542.t1 | MTR_5g073920 | 39.503 | 443 | 234 | 9 | 191 | 623 | 245 | 663 | 2.13e-93 | 303 |
| MS.gene38542.t1 | MTR_1g117090 | 35.146 | 515 | 268 | 9 | 159 | 628 | 184 | 677 | 2.43e-88 | 289 |
| MS.gene38542.t1 | MTR_3g464010 | 39.503 | 443 | 238 | 11 | 186 | 617 | 243 | 666 | 1.51e-87 | 287 |
| MS.gene38542.t1 | MTR_3g025900 | 31.769 | 554 | 347 | 10 | 85 | 623 | 75 | 612 | 6.27e-82 | 270 |
| MS.gene38542.t1 | MTR_2g096230 | 32.727 | 440 | 282 | 5 | 192 | 626 | 158 | 588 | 9.64e-80 | 264 |
| MS.gene38542.t1 | MTR_1g067480 | 31.407 | 519 | 321 | 9 | 116 | 617 | 100 | 600 | 7.50e-78 | 259 |
| MS.gene38542.t1 | MTR_4g062330 | 31.560 | 545 | 339 | 11 | 89 | 617 | 76 | 602 | 5.29e-77 | 258 |
| MS.gene38542.t1 | MTR_5g093530 | 43.251 | 363 | 174 | 7 | 257 | 617 | 238 | 570 | 3.00e-76 | 254 |
| MS.gene38542.t1 | MTR_1g067460 | 29.845 | 516 | 334 | 7 | 116 | 617 | 98 | 599 | 1.36e-71 | 243 |
| MS.gene38542.t1 | MTR_5g073900 | 41.026 | 390 | 176 | 11 | 209 | 589 | 1 | 345 | 4.26e-70 | 231 |
| MS.gene38542.t1 | MTR_5g073770 | 57.143 | 196 | 78 | 3 | 183 | 376 | 192 | 383 | 4.86e-62 | 211 |
| MS.gene38542.t1 | MTR_5g073960 | 48.198 | 222 | 88 | 6 | 154 | 371 | 218 | 416 | 4.62e-50 | 180 |
| MS.gene38542.t1 | MTR_5g073490 | 49.398 | 166 | 62 | 2 | 460 | 618 | 3 | 153 | 1.91e-44 | 155 |
| MS.gene38542.t1 | MTR_5g073780 | 37.657 | 239 | 121 | 3 | 389 | 620 | 7 | 224 | 2.95e-43 | 155 |
| MS.gene38542.t1 | MTR_5g073820 | 37.966 | 295 | 86 | 6 | 181 | 471 | 228 | 429 | 1.03e-40 | 155 |
| MS.gene38542.t1 | MTR_1g009620 | 26.949 | 449 | 303 | 7 | 194 | 628 | 225 | 662 | 4.31e-36 | 144 |
| MS.gene38542.t1 | MTR_1g017910 | 25.097 | 514 | 298 | 12 | 117 | 588 | 190 | 658 | 1.71e-30 | 127 |
| MS.gene38542.t1 | MTR_5g074190 | 32.667 | 300 | 117 | 9 | 329 | 618 | 184 | 408 | 4.89e-28 | 118 |
| MS.gene38542.t1 | MTR_5g073650 | 33.654 | 208 | 93 | 4 | 183 | 389 | 164 | 327 | 3.64e-23 | 101 |
| MS.gene38542.t1 | MTR_4g008260 | 24.083 | 436 | 306 | 12 | 194 | 618 | 219 | 640 | 3.72e-23 | 104 |
| MS.gene38542.t1 | MTR_0229s0040 | 32.086 | 187 | 118 | 1 | 451 | 628 | 31 | 217 | 2.80e-22 | 96.7 |
| MS.gene38542.t1 | MTR_5g073810 | 33.654 | 208 | 93 | 4 | 183 | 389 | 266 | 429 | 1.81e-21 | 97.8 |
| MS.gene38542.t1 | MTR_3g031110 | 83.333 | 60 | 10 | 0 | 269 | 328 | 17 | 76 | 8.87e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38542.t1 | AT5G58430 | 67.192 | 634 | 179 | 8 | 1 | 620 | 1 | 619 | 0.0 | 832 |
| MS.gene38542.t1 | AT1G07000 | 48.499 | 633 | 277 | 11 | 1 | 620 | 1 | 597 | 0.0 | 582 |
| MS.gene38542.t1 | AT5G50380 | 35.693 | 664 | 362 | 14 | 7 | 620 | 24 | 672 | 2.88e-118 | 367 |
| MS.gene38542.t1 | AT5G13990 | 40.734 | 518 | 289 | 8 | 118 | 626 | 180 | 688 | 7.60e-115 | 359 |
| MS.gene38542.t1 | AT1G72470 | 36.519 | 586 | 315 | 12 | 89 | 628 | 56 | 630 | 2.33e-114 | 355 |
| MS.gene38542.t1 | AT3G14090 | 34.637 | 537 | 309 | 7 | 117 | 619 | 85 | 613 | 8.05e-110 | 343 |
| MS.gene38542.t1 | AT1G54090 | 39.254 | 456 | 254 | 6 | 191 | 628 | 170 | 620 | 1.88e-109 | 342 |
| MS.gene38542.t1 | AT5G13150 | 36.522 | 575 | 307 | 13 | 87 | 628 | 104 | 653 | 1.17e-107 | 339 |
| MS.gene38542.t1 | AT5G03540 | 33.020 | 639 | 373 | 10 | 22 | 627 | 22 | 638 | 5.78e-106 | 334 |
| MS.gene38542.t1 | AT5G52340 | 32.385 | 633 | 374 | 11 | 24 | 627 | 24 | 631 | 1.28e-101 | 322 |
| MS.gene38542.t1 | AT5G03540 | 32.380 | 664 | 370 | 12 | 22 | 627 | 22 | 664 | 2.21e-101 | 323 |
| MS.gene38542.t1 | AT5G03540 | 35.261 | 536 | 310 | 7 | 110 | 627 | 7 | 523 | 1.24e-99 | 314 |
| MS.gene38542.t1 | AT3G29400 | 30.514 | 662 | 401 | 14 | 4 | 623 | 7 | 651 | 1.23e-86 | 284 |
| MS.gene38542.t1 | AT5G52350 | 35.281 | 445 | 263 | 5 | 185 | 619 | 148 | 577 | 2.00e-83 | 273 |
| MS.gene38542.t1 | AT2G39380 | 30.902 | 521 | 337 | 9 | 113 | 620 | 101 | 611 | 4.59e-76 | 255 |
| MS.gene38542.t1 | AT1G07725 | 31.350 | 437 | 276 | 5 | 196 | 623 | 174 | 595 | 1.12e-74 | 251 |
| MS.gene38542.t1 | AT5G59730 | 32.727 | 440 | 277 | 6 | 196 | 620 | 164 | 599 | 9.11e-72 | 243 |
| MS.gene38542.t1 | AT5G59730 | 32.727 | 440 | 277 | 6 | 196 | 620 | 164 | 599 | 1.01e-71 | 243 |
| MS.gene38542.t1 | AT5G61010 | 31.163 | 430 | 284 | 5 | 192 | 618 | 205 | 625 | 3.50e-70 | 239 |
| MS.gene38542.t1 | AT5G61010 | 31.163 | 430 | 284 | 5 | 192 | 618 | 205 | 625 | 3.50e-70 | 239 |
| MS.gene38542.t1 | AT3G09530 | 29.848 | 526 | 336 | 9 | 116 | 623 | 96 | 606 | 1.28e-69 | 238 |
| MS.gene38542.t1 | AT3G55150 | 30.717 | 446 | 283 | 6 | 191 | 620 | 176 | 611 | 1.47e-69 | 238 |
| MS.gene38542.t1 | AT3G09520 | 29.811 | 530 | 326 | 9 | 116 | 621 | 101 | 608 | 4.86e-69 | 236 |
| MS.gene38542.t1 | AT2G28640 | 30.872 | 447 | 290 | 6 | 187 | 623 | 145 | 582 | 7.72e-68 | 232 |
| MS.gene38542.t1 | AT2G28650 | 32.697 | 419 | 263 | 7 | 202 | 617 | 152 | 554 | 7.79e-58 | 204 |
| MS.gene38542.t1 | AT4G31540 | 26.000 | 450 | 306 | 7 | 194 | 628 | 228 | 665 | 9.67e-34 | 137 |
| MS.gene38542.t1 | AT1G51640 | 25.641 | 468 | 294 | 16 | 185 | 618 | 179 | 626 | 1.60e-25 | 112 |
Find 139 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTGATCTTTCATTTA+TGG | 0.164125 | 3.4:+61382840 | MS.gene38542:CDS |
| GGATTTGTTGGAACGGAATT+TGG | 0.173055 | 3.4:+61383317 | MS.gene38542:CDS |
| TCGGCTTAACAATTTGTTTC+AGG | 0.178199 | 3.4:+61383794 | MS.gene38542:CDS |
| AGTTCAAATTTCGTGGATTA+TGG | 0.178913 | 3.4:+61383296 | MS.gene38542:CDS |
| CCTGCTTATGGAAGCTTTAT+TGG | 0.189869 | 3.4:+61383696 | MS.gene38542:CDS |
| CATCTTTAGTTTCTCCTTCA+TGG | 0.250229 | 3.4:-61383568 | None:intergenic |
| AAGCTCTTGTTGCCTGCTTA+TGG | 0.263773 | 3.4:+61383684 | MS.gene38542:CDS |
| ATGATTCAAATTCAGGAATT+AGG | 0.267798 | 3.4:-61382978 | None:intergenic |
| AAGACTAAAGACAGTGAATT+AGG | 0.274123 | 3.4:+61383417 | MS.gene38542:CDS |
| AGGATGATAGCGGCGGGATT+TGG | 0.275455 | 3.4:+61382583 | MS.gene38542:CDS |
| GAAAACAATGATTCAAATTC+AGG | 0.283648 | 3.4:-61382985 | None:intergenic |
| TGAGATTGAACGATGGATTA+AGG | 0.289158 | 3.4:+61382732 | MS.gene38542:CDS |
| CCGGTGAAGGCAGTGGTTCC+TGG | 0.300635 | 3.4:+61383117 | MS.gene38542:CDS |
| AAGAGAGTTTATCGAGATTA+GGG | 0.303056 | 3.4:+61382653 | MS.gene38542:CDS |
| AGTGATAAGTATATCAAGTT+TGG | 0.303408 | 3.4:+61383753 | MS.gene38542:CDS |
| AAAGAAAATCTCTCCGATTC+AGG | 0.315355 | 3.4:+61382091 | MS.gene38542:CDS |
| AACTTCTTTGATAGTTCATA+TGG | 0.330809 | 3.4:-61383494 | None:intergenic |
| TCGGCGGCGCGTCGTTTAAC+GGG | 0.333185 | 3.4:+61382380 | MS.gene38542:CDS |
| CAGTGAATTAGGAACACTTT+TGG | 0.354775 | 3.4:+61383428 | MS.gene38542:CDS |
| GAAGAGAGTTTATCGAGATT+AGG | 0.357972 | 3.4:+61382652 | MS.gene38542:CDS |
| AGATAATGCACTTTCTTTGA+AGG | 0.361618 | 3.4:+61383227 | MS.gene38542:CDS |
| GTTACAGAAATTGAGTATTT+CGG | 0.364745 | 3.4:+61382675 | MS.gene38542:CDS |
| CGGTGATGAGGATTTGATTC+CGG | 0.364925 | 3.4:+61382477 | MS.gene38542:CDS |
| AGCAGCTCAAGGAAGAAATA+AGG | 0.365241 | 3.4:+61383649 | MS.gene38542:CDS |
| CGGTCATGTTGTGATTTGTT+TGG | 0.367917 | 3.4:-61382024 | None:intergenic |
| TCTAACCTTTCATCATGCTT+AGG | 0.368736 | 3.4:-61383255 | None:intergenic |
| GGATGATAGCGGCGGGATTT+GGG | 0.372662 | 3.4:+61382584 | MS.gene38542:CDS |
| GCACTCTAAACAACCGTTCC+GGG | 0.377408 | 3.4:-61382930 | None:intergenic |
| TTCGTGGATTATGGATTTGT+TGG | 0.379147 | 3.4:+61383305 | MS.gene38542:CDS |
| CGCATGTTTACGGTGGTTGT+AGG | 0.380390 | 3.4:+61382617 | MS.gene38542:CDS |
| GAGGTTGGGTGAAGCGATAA+GGG | 0.381077 | 3.4:+61383056 | MS.gene38542:CDS |
| CTAACCTTTCATCATGCTTA+GGG | 0.383647 | 3.4:-61383254 | None:intergenic |
| CTCGGCGGCGCGTCGTTTAA+CGG | 0.386991 | 3.4:+61382379 | MS.gene38542:CDS |
| AAGGAGTGTTCGCATGTTTA+CGG | 0.398430 | 3.4:+61382607 | MS.gene38542:CDS |
| TGAACTATCAAAGAAGTTCA+TGG | 0.402092 | 3.4:+61383499 | MS.gene38542:CDS |
| ATCTTTAGTTTCTCCTTCAT+GGG | 0.408211 | 3.4:-61383567 | None:intergenic |
| AACAATTTGTTTCAGGGAAG+TGG | 0.413392 | 3.4:+61383801 | MS.gene38542:CDS |
| TTCATCACATAACGAGTAAT+CGG | 0.414939 | 3.4:-61383153 | None:intergenic |
| AGTTCATGGAACAAGTTGTT+GGG | 0.426094 | 3.4:+61383513 | MS.gene38542:CDS |
| AGAGGTTGGGTGAAGCGATA+AGG | 0.440836 | 3.4:+61383055 | MS.gene38542:CDS |
| AAACGCGGCGGAAGCTGCCG+CGG | 0.447549 | 3.4:-61382206 | None:intergenic |
| AGCACTCTAAACAACCGTTC+CGG | 0.449631 | 3.4:-61382931 | None:intergenic |
| TATGGAGGTCTGCCGTGGTT+CGG | 0.450780 | 3.4:+61382858 | MS.gene38542:CDS |
| GGTGATCGACGCGCTTCCTT+CGG | 0.451279 | 3.4:+61382528 | MS.gene38542:CDS |
| CGGCTTAACAATTTGTTTCA+GGG | 0.457027 | 3.4:+61383795 | MS.gene38542:CDS |
| AGCAGATGACGAAGATAAAC+CGG | 0.457757 | 3.4:-61382818 | None:intergenic |
| CACGAAACATAGCTTGTTGA+AGG | 0.459161 | 3.4:-61382327 | None:intergenic |
| ATCATTCCGTGGACCTGAAT+CGG | 0.460436 | 3.4:-61382104 | None:intergenic |
| AAGGCAGTGGTTCCTGGCGG+AGG | 0.461078 | 3.4:+61383123 | MS.gene38542:CDS |
| ATCACGAATCGGAAGAGGTT+GGG | 0.472418 | 3.4:+61383042 | MS.gene38542:CDS |
| CCAATAAAGCTTCCATAAGC+AGG | 0.477943 | 3.4:-61383696 | None:intergenic |
| TCAACAACCGCTTTCGCCAC+CGG | 0.478827 | 3.4:-61382496 | None:intergenic |
| AAGTTCATGGAACAAGTTGT+TGG | 0.482190 | 3.4:+61383512 | MS.gene38542:CDS |
| GGTGGATGAAGATGGAGAAG+AGG | 0.488699 | 3.4:+61382447 | MS.gene38542:CDS |
| AACGCGGCGGAAGCTGCCGC+GGG | 0.488740 | 3.4:-61382205 | None:intergenic |
| CCAGGAACCACTGCCTTCAC+CGG | 0.491457 | 3.4:-61383117 | None:intergenic |
| CAAGTTGTTGGGGTTTCTGA+AGG | 0.492149 | 3.4:+61383524 | MS.gene38542:CDS |
| GTTTCTGAAGGTGGAGACAT+TGG | 0.492849 | 3.4:+61383536 | MS.gene38542:CDS |
| TCACTATTCTTAGCAAGCTC+CGG | 0.496214 | 3.4:-61383735 | None:intergenic |
| TTAACGAAGCAATCACGAAT+CGG | 0.501029 | 3.4:+61383031 | MS.gene38542:CDS |
| TTCAAGTGCGGTGTAGCGTA+TGG | 0.502412 | 3.4:-61382128 | None:intergenic |
| GAATTTGATTAGTCGTGATC+CGG | 0.504195 | 3.4:+61383098 | MS.gene38542:CDS |
| ATGTTTACGGTGGTTGTAGG+AGG | 0.505725 | 3.4:+61382620 | MS.gene38542:CDS |
| CTTATGGAAGCTTTATTGGA+AGG | 0.506562 | 3.4:+61383700 | MS.gene38542:CDS |
| GTTGTTGGGGTTTCTGAAGG+TGG | 0.519469 | 3.4:+61383527 | MS.gene38542:CDS |
| GATGGAGAAGAGGAGATTGA+CGG | 0.521861 | 3.4:+61382457 | MS.gene38542:CDS |
| AAGCAATCACGAATCGGAAG+AGG | 0.524371 | 3.4:+61383037 | MS.gene38542:CDS |
| TGCTGATCTTTCATTTATGG+AGG | 0.526214 | 3.4:+61382843 | MS.gene38542:CDS |
| TTCGTGCGGAGGAAGAGTTT+CGG | 0.528063 | 3.4:+61382344 | MS.gene38542:CDS |
| AGAGGAGATTGACGGTGATG+AGG | 0.533758 | 3.4:+61382465 | MS.gene38542:CDS |
| TCACAAAGACGTCGTTCACT+CGG | 0.535046 | 3.4:-61382784 | None:intergenic |
| TTGTTGCGATAATCGAAGAT+TGG | 0.535447 | 3.4:+61382248 | MS.gene38542:CDS |
| ATTTACGCGAAATCGCGAAA+AGG | 0.537578 | 3.4:+61382563 | MS.gene38542:CDS |
| ACAAGCTATGTTTCGTGCGG+AGG | 0.539091 | 3.4:+61382333 | MS.gene38542:CDS |
| TCGTGATCCGGTGAAGGCAG+TGG | 0.540702 | 3.4:+61383110 | MS.gene38542:CDS |
| AACGACGAGGTGGATGAAGA+TGG | 0.545776 | 3.4:+61382439 | MS.gene38542:CDS |
| AATTTGTTTCAGGGAAGTGG+TGG | 0.545912 | 3.4:+61383804 | MS.gene38542:CDS |
| CAAATCTTCTCAAATTTCGA+CGG | 0.553855 | 3.4:+61382058 | MS.gene38542:CDS |
| CGGAAGTTCATAAGATGCAA+TGG | 0.554271 | 3.4:+61382695 | MS.gene38542:CDS |
| AATCACGAATCGGAAGAGGT+TGG | 0.554464 | 3.4:+61383041 | MS.gene38542:CDS |
| TTTGCTGATGCGGTGGCGAT+TGG | 0.555152 | 3.4:+61382898 | MS.gene38542:CDS |
| TAAGTATATCAAGTTTGGAA+TGG | 0.555489 | 3.4:+61383758 | MS.gene38542:CDS |
| ATCTCTCCGATTCAGGTCCA+CGG | 0.558182 | 3.4:+61382098 | MS.gene38542:CDS |
| CAGGGAAGTGGTGGATCGAA+TGG | 0.559457 | 3.4:+61383813 | MS.gene38542:CDS |
| ACTACCTTCGCGCTGCATGT+AGG | 0.564108 | 3.4:+61383175 | MS.gene38542:CDS |
| GATTAGTCGTGATCCGGTGA+AGG | 0.565011 | 3.4:+61383104 | MS.gene38542:CDS |
| GGCGATTGGTAGTAGATCCC+CGG | 0.570140 | 3.4:+61382912 | MS.gene38542:CDS |
| ATCGGATGAAGACCTCCGCC+AGG | 0.570752 | 3.4:-61383135 | None:intergenic |
| TGTTTACGGTGGTTGTAGGA+GGG | 0.571941 | 3.4:+61382621 | MS.gene38542:CDS |
| AAATCGTTCACCGTCGCCGA+AGG | 0.576036 | 3.4:-61382544 | None:intergenic |
| TCATTTATGGAGGTCTGCCG+TGG | 0.576396 | 3.4:+61382853 | MS.gene38542:CDS |
| GAATGGAGGACATTGAAGCT+CGG | 0.577308 | 3.4:+61383775 | MS.gene38542:CDS |
| TTTGATTCCGGTGGCGAAAG+CGG | 0.581481 | 3.4:+61382489 | MS.gene38542:CDS |
| GATTTCTCGTCATCTCTCCT+CGG | 0.589735 | 3.4:+61382177 | MS.gene38542:CDS |
| GGATTATGGATTTGTTGGAA+CGG | 0.590121 | 3.4:+61383310 | MS.gene38542:CDS |
| TGTCTTTGATGAGCAGCTCA+AGG | 0.590338 | 3.4:+61383638 | MS.gene38542:CDS |
| GATAGCGGCGGGATTTGGGA+AGG | 0.590529 | 3.4:+61382588 | MS.gene38542:CDS |
| GCGAAAAGGATGATAGCGGC+GGG | 0.593775 | 3.4:+61382577 | MS.gene38542:CDS |
| CGACGCGCTTCCTTCGGCGA+CGG | 0.596311 | 3.4:+61382534 | MS.gene38542:CDS |
| GTATATCAAGTTTGGAATGG+AGG | 0.596974 | 3.4:+61383761 | MS.gene38542:CDS |
| TTTCGGTCGTTGATAGAACT+CGG | 0.600500 | 3.4:+61382361 | MS.gene38542:CDS |
| CGCGTGTCTTCTACGTGCTG+AGG | 0.602278 | 3.4:+61382300 | MS.gene38542:CDS |
| TATCGCAACAAGCTCGTCAA+CGG | 0.607813 | 3.4:-61382236 | None:intergenic |
| GAAGATTTGAAGAATATCAT+CGG | 0.609392 | 3.4:-61382044 | None:intergenic |
| GTTCATGGAACAAGTTGTTG+GGG | 0.614676 | 3.4:+61383514 | MS.gene38542:CDS |
| TCGACCTACATGCAGCGCGA+AGG | 0.616717 | 3.4:-61383179 | None:intergenic |
| TGATGAGGATTTGATTCCGG+TGG | 0.620676 | 3.4:+61382480 | MS.gene38542:CDS |
| CGCAACAAGCTCGTCAACGG+CGG | 0.621899 | 3.4:-61382233 | None:intergenic |
| TAGCGTATGGTATCATTCCG+TGG | 0.625647 | 3.4:-61382115 | None:intergenic |
| CACTCTAAACAACCGTTCCG+GGG | 0.627665 | 3.4:-61382929 | None:intergenic |
| CTTTCCAATGATAAAACCGT+CGG | 0.630264 | 3.4:+61382277 | MS.gene38542:CDS |
| CGCGAAAAGGATGATAGCGG+CGG | 0.631866 | 3.4:+61382576 | MS.gene38542:CDS |
| ACGTAGAAGACACGCGCCGA+CGG | 0.632061 | 3.4:-61382293 | None:intergenic |
| GTTGAGAGTTTGTTCAAGTG+CGG | 0.632373 | 3.4:-61382140 | None:intergenic |
| CGGCGGCGCGTCGTTTAACG+GGG | 0.636100 | 3.4:+61382381 | MS.gene38542:CDS |
| GAGTGTTCGCATGTTTACGG+TGG | 0.639374 | 3.4:+61382610 | MS.gene38542:CDS |
| CGAATGGTAGCCGTAAGTGA+AGG | 0.641673 | 3.4:+61383829 | MS.gene38542:CDS |
| TCAACAAGCTATGTTTCGTG+CGG | 0.642312 | 3.4:+61382330 | MS.gene38542:CDS |
| ATTGGCTGCGAAACCCATGA+AGG | 0.642590 | 3.4:+61383554 | MS.gene38542:CDS |
| ATTACCCTAAGCATGATGAA+AGG | 0.646811 | 3.4:+61383250 | MS.gene38542:CDS |
| AGGTTGGGTGAAGCGATAAG+GGG | 0.658361 | 3.4:+61383057 | MS.gene38542:CDS |
| TGAAGAGAAATTACTCGCTG+TGG | 0.662466 | 3.4:+61381976 | MS.gene38542:CDS |
| AACGGGGAGATGAATCTGAA+CGG | 0.662474 | 3.4:+61382397 | MS.gene38542:CDS |
| TATGTAGGGTTCAATCTCAG+TGG | 0.664137 | 3.4:+61383613 | MS.gene38542:CDS |
| GTAACTGAATTGCCGAACCA+CGG | 0.664529 | 3.4:-61382870 | None:intergenic |
| AGCTGCCGCGGGAATCTCCG+AGG | 0.668975 | 3.4:-61382194 | None:intergenic |
| TTATGAAACAAACGACGAGG+TGG | 0.669921 | 3.4:+61382429 | MS.gene38542:CDS |
| AGAGATGACGAGAAATCTGA+CGG | 0.670142 | 3.4:-61382171 | None:intergenic |
| GTGAAGGCAGTGGTTCCTGG+CGG | 0.679578 | 3.4:+61383120 | MS.gene38542:CDS |
| TTGGTAGTAGATCCCCGGAA+CGG | 0.697839 | 3.4:+61382917 | MS.gene38542:CDS |
| TTGAAGATGAGATTGAACGA+TGG | 0.701231 | 3.4:+61382725 | MS.gene38542:CDS |
| GAAAACACAGTACAAAAGTG+CGG | 0.701354 | 3.4:+61383466 | MS.gene38542:CDS |
| GTCAACGGCGGAGAGAAACG+CGG | 0.703045 | 3.4:-61382221 | None:intergenic |
| AGCGGTTGTTGATTATAACG+TGG | 0.708335 | 3.4:+61382507 | MS.gene38542:CDS |
| TCTCTCCTCGGAGATTCCCG+CGG | 0.713618 | 3.4:+61382189 | MS.gene38542:CDS |
| AATCGCGAAAAGGATGATAG+CGG | 0.726119 | 3.4:+61382573 | MS.gene38542:CDS |
| AACGGCGGAGAGAAACGCGG+CGG | 0.733361 | 3.4:-61382218 | None:intergenic |
| CGGTCGTTGATAGAACTCGG+CGG | 0.748076 | 3.4:+61382364 | MS.gene38542:CDS |
| ACTTTATGAAACAAACGACG+AGG | 0.756455 | 3.4:+61382426 | MS.gene38542:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGTGATAAGTATATCAAGTT+TGG | + | chr3.4:61383753-61383772 | MS.gene38542:CDS | 25.0% |
| ! | ATGATTCAAATTCAGGAATT+AGG | - | chr3.4:61382981-61383000 | None:intergenic | 25.0% |
| ! | GAAAACAATGATTCAAATTC+AGG | - | chr3.4:61382988-61383007 | None:intergenic | 25.0% |
| ! | GAAGATTTGAAGAATATCAT+CGG | - | chr3.4:61382047-61382066 | None:intergenic | 25.0% |
| ! | GTTACAGAAATTGAGTATTT+CGG | + | chr3.4:61382675-61382694 | MS.gene38542:CDS | 25.0% |
| ! | TAAGTATATCAAGTTTGGAA+TGG | + | chr3.4:61383758-61383777 | MS.gene38542:CDS | 25.0% |
| !! | AACTTCTTTGATAGTTCATA+TGG | - | chr3.4:61383497-61383516 | None:intergenic | 25.0% |
| !!! | CTGTTTTTATGATGAACAAT+GGG | + | chr3.4:61383379-61383398 | MS.gene38542:CDS | 25.0% |
| !!! | TCTGTTTTTATGATGAACAA+TGG | + | chr3.4:61383378-61383397 | MS.gene38542:CDS | 25.0% |
| AAGACTAAAGACAGTGAATT+AGG | + | chr3.4:61383417-61383436 | MS.gene38542:CDS | 30.0% | |
| AAGAGAGTTTATCGAGATTA+GGG | + | chr3.4:61382653-61382672 | MS.gene38542:CDS | 30.0% | |
| AGATAATGCACTTTCTTTGA+AGG | + | chr3.4:61383227-61383246 | MS.gene38542:CDS | 30.0% | |
| ATAAAAACAGAACACAAAGC+AGG | - | chr3.4:61383369-61383388 | None:intergenic | 30.0% | |
| CAAATCTTCTCAAATTTCGA+CGG | + | chr3.4:61382058-61382077 | MS.gene38542:CDS | 30.0% | |
| TAAAAACAGAACACAAAGCA+GGG | - | chr3.4:61383368-61383387 | None:intergenic | 30.0% | |
| TGAACTATCAAAGAAGTTCA+TGG | + | chr3.4:61383499-61383518 | MS.gene38542:CDS | 30.0% | |
| TTCATCACATAACGAGTAAT+CGG | - | chr3.4:61383156-61383175 | None:intergenic | 30.0% | |
| ! | AGTGAATTAGGAACACTTTT+GGG | + | chr3.4:61383429-61383448 | MS.gene38542:CDS | 30.0% |
| ! | AGTTCAAATTTCGTGGATTA+TGG | + | chr3.4:61383296-61383315 | MS.gene38542:CDS | 30.0% |
| ! | ATCTTTAGTTTCTCCTTCAT+GGG | - | chr3.4:61383570-61383589 | None:intergenic | 30.0% |
| ! | GTTACTTAATTTTGCTGATG+CGG | + | chr3.4:61382888-61382907 | MS.gene38542:CDS | 30.0% |
| ! | TGGAAGGTTTCAAATTTTAC+CGG | + | chr3.4:61383716-61383735 | MS.gene38542:CDS | 30.0% |
| !! | GCATTTTGAAGAGATATGTA+GGG | + | chr3.4:61383599-61383618 | MS.gene38542:CDS | 30.0% |
| !! | TGCATTTTGAAGAGATATGT+AGG | + | chr3.4:61383598-61383617 | MS.gene38542:CDS | 30.0% |
| AAAGAAAATCTCTCCGATTC+AGG | + | chr3.4:61382091-61382110 | MS.gene38542:CDS | 35.0% | |
| AAGTTCATGGAACAAGTTGT+TGG | + | chr3.4:61383512-61383531 | MS.gene38542:CDS | 35.0% | |
| ACTTTATGAAACAAACGACG+AGG | + | chr3.4:61382426-61382445 | MS.gene38542:CDS | 35.0% | |
| AGTTCATGGAACAAGTTGTT+GGG | + | chr3.4:61383513-61383532 | MS.gene38542:CDS | 35.0% | |
| ATTACCCTAAGCATGATGAA+AGG | + | chr3.4:61383250-61383269 | MS.gene38542:CDS | 35.0% | |
| CTAACCTTTCATCATGCTTA+GGG | - | chr3.4:61383257-61383276 | None:intergenic | 35.0% | |
| CTTTCCAATGATAAAACCGT+CGG | + | chr3.4:61382277-61382296 | MS.gene38542:CDS | 35.0% | |
| GAAAACACAGTACAAAAGTG+CGG | + | chr3.4:61383466-61383485 | MS.gene38542:CDS | 35.0% | |
| GAAGAGAGTTTATCGAGATT+AGG | + | chr3.4:61382652-61382671 | MS.gene38542:CDS | 35.0% | |
| TCTAACCTTTCATCATGCTT+AGG | - | chr3.4:61383258-61383277 | None:intergenic | 35.0% | |
| TGCTGATCTTTCATTTATGG+AGG | + | chr3.4:61382843-61382862 | MS.gene38542:CDS | 35.0% | |
| TGCTGCTGATCTTTCATTTA+TGG | + | chr3.4:61382840-61382859 | MS.gene38542:CDS | 35.0% | |
| TTAACGAAGCAATCACGAAT+CGG | + | chr3.4:61383031-61383050 | MS.gene38542:CDS | 35.0% | |
| TTGAAGATGAGATTGAACGA+TGG | + | chr3.4:61382725-61382744 | MS.gene38542:CDS | 35.0% | |
| TTGTTGCGATAATCGAAGAT+TGG | + | chr3.4:61382248-61382267 | MS.gene38542:CDS | 35.0% | |
| ! | AACAATTTGTTTCAGGGAAG+TGG | + | chr3.4:61383801-61383820 | MS.gene38542:CDS | 35.0% |
| ! | AAGGGGAACTTTTATGGAAT+TGG | + | chr3.4:61383074-61383093 | MS.gene38542:CDS | 35.0% |
| ! | CAGTGAATTAGGAACACTTT+TGG | + | chr3.4:61383428-61383447 | MS.gene38542:CDS | 35.0% |
| ! | CATCTTTAGTTTCTCCTTCA+TGG | - | chr3.4:61383571-61383590 | None:intergenic | 35.0% |
| ! | CGGCTTAACAATTTGTTTCA+GGG | + | chr3.4:61383795-61383814 | MS.gene38542:CDS | 35.0% |
| ! | CGTTTTCAGTTCAAATTTCG+TGG | + | chr3.4:61383289-61383308 | MS.gene38542:CDS | 35.0% |
| ! | GAATTTGATTAGTCGTGATC+CGG | + | chr3.4:61383098-61383117 | MS.gene38542:CDS | 35.0% |
| ! | GTATATCAAGTTTGGAATGG+AGG | + | chr3.4:61383761-61383780 | MS.gene38542:CDS | 35.0% |
| ! | TCGGCTTAACAATTTGTTTC+AGG | + | chr3.4:61383794-61383813 | MS.gene38542:CDS | 35.0% |
| ! | TTCGTGGATTATGGATTTGT+TGG | + | chr3.4:61383305-61383324 | MS.gene38542:CDS | 35.0% |
| !! | ACGGTTTTATCATTGGAAAG+AGG | - | chr3.4:61382277-61382296 | None:intergenic | 35.0% |
| !! | CTTATGGAAGCTTTATTGGA+AGG | + | chr3.4:61383700-61383719 | MS.gene38542:CDS | 35.0% |
| !! | GGATTATGGATTTGTTGGAA+CGG | + | chr3.4:61383310-61383329 | MS.gene38542:CDS | 35.0% |
| !! | TGAGATTGAACGATGGATTA+AGG | + | chr3.4:61382732-61382751 | MS.gene38542:CDS | 35.0% |
| AATCGCGAAAAGGATGATAG+CGG | + | chr3.4:61382573-61382592 | MS.gene38542:CDS | 40.0% | |
| AGAGATGACGAGAAATCTGA+CGG | - | chr3.4:61382174-61382193 | None:intergenic | 40.0% | |
| AGCAGATGACGAAGATAAAC+CGG | - | chr3.4:61382821-61382840 | None:intergenic | 40.0% | |
| AGCAGCTCAAGGAAGAAATA+AGG | + | chr3.4:61383649-61383668 | MS.gene38542:CDS | 40.0% | |
| ATTTACGCGAAATCGCGAAA+AGG | + | chr3.4:61382563-61382582 | MS.gene38542:CDS | 40.0% | |
| CCAATAAAGCTTCCATAAGC+AGG | - | chr3.4:61383699-61383718 | None:intergenic | 40.0% | |
| CGGAAGTTCATAAGATGCAA+TGG | + | chr3.4:61382695-61382714 | MS.gene38542:CDS | 40.0% | |
| GTTCATGGAACAAGTTGTTG+GGG | + | chr3.4:61383514-61383533 | MS.gene38542:CDS | 40.0% | |
| TATGTAGGGTTCAATCTCAG+TGG | + | chr3.4:61383613-61383632 | MS.gene38542:CDS | 40.0% | |
| TCAACAAGCTATGTTTCGTG+CGG | + | chr3.4:61382330-61382349 | MS.gene38542:CDS | 40.0% | |
| TCACTATTCTTAGCAAGCTC+CGG | - | chr3.4:61383738-61383757 | None:intergenic | 40.0% | |
| TGAAGAGAAATTACTCGCTG+TGG | + | chr3.4:61381976-61381995 | MS.gene38542:CDS | 40.0% | |
| TTATGAAACAAACGACGAGG+TGG | + | chr3.4:61382429-61382448 | MS.gene38542:CDS | 40.0% | |
| ! | AATTTGTTTCAGGGAAGTGG+TGG | + | chr3.4:61383804-61383823 | MS.gene38542:CDS | 40.0% |
| ! | ACTTAATTTTGCTGATGCGG+TGG | + | chr3.4:61382891-61382910 | MS.gene38542:CDS | 40.0% |
| ! | AGCGATAAGGGGAACTTTTA+TGG | + | chr3.4:61383068-61383087 | MS.gene38542:CDS | 40.0% |
| ! | AGCGGTTGTTGATTATAACG+TGG | + | chr3.4:61382507-61382526 | MS.gene38542:CDS | 40.0% |
| ! | CCTGCTTATGGAAGCTTTAT+TGG | + | chr3.4:61383696-61383715 | MS.gene38542:CDS | 40.0% |
| ! | CTTTGTGATCGTGTTTTCTC+CGG | + | chr3.4:61382799-61382818 | MS.gene38542:CDS | 40.0% |
| ! | GTTGAGAGTTTGTTCAAGTG+CGG | - | chr3.4:61382143-61382162 | None:intergenic | 40.0% |
| ! | TTTCGGTCGTTGATAGAACT+CGG | + | chr3.4:61382361-61382380 | MS.gene38542:CDS | 40.0% |
| !! | AAGGAGTGTTCGCATGTTTA+CGG | + | chr3.4:61382607-61382626 | MS.gene38542:CDS | 40.0% |
| !! | CACGAAACATAGCTTGTTGA+AGG | - | chr3.4:61382330-61382349 | None:intergenic | 40.0% |
| !! | CGGTCATGTTGTGATTTGTT+TGG | - | chr3.4:61382027-61382046 | None:intergenic | 40.0% |
| !! | GAACACTTTTGGGTGATGAT+TGG | + | chr3.4:61383439-61383458 | MS.gene38542:CDS | 40.0% |
| !! | GGATTTGTTGGAACGGAATT+TGG | + | chr3.4:61383317-61383336 | MS.gene38542:CDS | 40.0% |
| AACGGGGAGATGAATCTGAA+CGG | + | chr3.4:61382397-61382416 | MS.gene38542:CDS | 45.0% | |
| AAGCAATCACGAATCGGAAG+AGG | + | chr3.4:61383037-61383056 | MS.gene38542:CDS | 45.0% | |
| AAGCTCTTGTTGCCTGCTTA+TGG | + | chr3.4:61383684-61383703 | MS.gene38542:CDS | 45.0% | |
| AATCACGAATCGGAAGAGGT+TGG | + | chr3.4:61383041-61383060 | MS.gene38542:CDS | 45.0% | |
| AGCACTCTAAACAACCGTTC+CGG | - | chr3.4:61382934-61382953 | None:intergenic | 45.0% | |
| ATCACGAATCGGAAGAGGTT+GGG | + | chr3.4:61383042-61383061 | MS.gene38542:CDS | 45.0% | |
| ATCATTCCGTGGACCTGAAT+CGG | - | chr3.4:61382107-61382126 | None:intergenic | 45.0% | |
| ATGTTTACGGTGGTTGTAGG+AGG | + | chr3.4:61382620-61382639 | MS.gene38542:CDS | 45.0% | |
| CAAGTTGTTGGGGTTTCTGA+AGG | + | chr3.4:61383524-61383543 | MS.gene38542:CDS | 45.0% | |
| CGCCACATAGCAAAAACTCT+AGG | + | chr3.4:61382001-61382020 | MS.gene38542:CDS | 45.0% | |
| CGGTGATGAGGATTTGATTC+CGG | + | chr3.4:61382477-61382496 | MS.gene38542:CDS | 45.0% | |
| GAATGGAGGACATTGAAGCT+CGG | + | chr3.4:61383775-61383794 | MS.gene38542:CDS | 45.0% | |
| GATGGAGAAGAGGAGATTGA+CGG | + | chr3.4:61382457-61382476 | MS.gene38542:CDS | 45.0% | |
| GATTTCTCGTCATCTCTCCT+CGG | + | chr3.4:61382177-61382196 | MS.gene38542:CDS | 45.0% | |
| GTAACTGAATTGCCGAACCA+CGG | - | chr3.4:61382873-61382892 | None:intergenic | 45.0% | |
| TAGCGTATGGTATCATTCCG+TGG | - | chr3.4:61382118-61382137 | None:intergenic | 45.0% | |
| TATCGCAACAAGCTCGTCAA+CGG | - | chr3.4:61382239-61382258 | None:intergenic | 45.0% | |
| TCACAAAGACGTCGTTCACT+CGG | - | chr3.4:61382787-61382806 | None:intergenic | 45.0% | |
| TGATGAGGATTTGATTCCGG+TGG | + | chr3.4:61382480-61382499 | MS.gene38542:CDS | 45.0% | |
| TGTCTTTGATGAGCAGCTCA+AGG | + | chr3.4:61383638-61383657 | MS.gene38542:CDS | 45.0% | |
| TGTTTACGGTGGTTGTAGGA+GGG | + | chr3.4:61382621-61382640 | MS.gene38542:CDS | 45.0% | |
| ! | GTTTCTGAAGGTGGAGACAT+TGG | + | chr3.4:61383536-61383555 | MS.gene38542:CDS | 45.0% |
| ! | TGGTTGTAGGAGGGAGTTTT+TGG | + | chr3.4:61382630-61382649 | MS.gene38542:CDS | 45.0% |
| !! | GGCCTAGAGTTTTTGCTATG+TGG | - | chr3.4:61382006-61382025 | None:intergenic | 45.0% |
| AACGACGAGGTGGATGAAGA+TGG | + | chr3.4:61382439-61382458 | MS.gene38542:CDS | 50.0% | |
| ACAAGCTATGTTTCGTGCGG+AGG | + | chr3.4:61382333-61382352 | MS.gene38542:CDS | 50.0% | |
| AGAGGAGATTGACGGTGATG+AGG | + | chr3.4:61382465-61382484 | MS.gene38542:CDS | 50.0% | |
| AGAGGTTGGGTGAAGCGATA+AGG | + | chr3.4:61383055-61383074 | MS.gene38542:CDS | 50.0% | |
| AGGTTGGGTGAAGCGATAAG+GGG | + | chr3.4:61383057-61383076 | MS.gene38542:CDS | 50.0% | |
| ATCTCTCCGATTCAGGTCCA+CGG | + | chr3.4:61382098-61382117 | MS.gene38542:CDS | 50.0% | |
| ATTGGCTGCGAAACCCATGA+AGG | + | chr3.4:61383554-61383573 | MS.gene38542:CDS | 50.0% | |
| CACTCTAAACAACCGTTCCG+GGG | - | chr3.4:61382932-61382951 | None:intergenic | 50.0% | |
| CGCATGTTTACGGTGGTTGT+AGG | + | chr3.4:61382617-61382636 | MS.gene38542:CDS | 50.0% | |
| GAGGTTGGGTGAAGCGATAA+GGG | + | chr3.4:61383056-61383075 | MS.gene38542:CDS | 50.0% | |
| GAGTGTTCGCATGTTTACGG+TGG | + | chr3.4:61382610-61382629 | MS.gene38542:CDS | 50.0% | |
| GCACTCTAAACAACCGTTCC+GGG | - | chr3.4:61382933-61382952 | None:intergenic | 50.0% | |
| GGTGGATGAAGATGGAGAAG+AGG | + | chr3.4:61382447-61382466 | MS.gene38542:CDS | 50.0% | |
| TCATTTATGGAGGTCTGCCG+TGG | + | chr3.4:61382853-61382872 | MS.gene38542:CDS | 50.0% | |
| TTCAAGTGCGGTGTAGCGTA+TGG | - | chr3.4:61382131-61382150 | None:intergenic | 50.0% | |
| TTCGTGCGGAGGAAGAGTTT+CGG | + | chr3.4:61382344-61382363 | MS.gene38542:CDS | 50.0% | |
| TTTGATTCCGGTGGCGAAAG+CGG | + | chr3.4:61382489-61382508 | MS.gene38542:CDS | 50.0% | |
| ! | GATTAGTCGTGATCCGGTGA+AGG | + | chr3.4:61383104-61383123 | MS.gene38542:CDS | 50.0% |
| ! | GTTGTTGGGGTTTCTGAAGG+TGG | + | chr3.4:61383527-61383546 | MS.gene38542:CDS | 50.0% |
| ! | TTGGTAGTAGATCCCCGGAA+CGG | + | chr3.4:61382917-61382936 | MS.gene38542:CDS | 50.0% |
| AAATCGTTCACCGTCGCCGA+AGG | - | chr3.4:61382547-61382566 | None:intergenic | 55.0% | |
| ACTACCTTCGCGCTGCATGT+AGG | + | chr3.4:61383175-61383194 | MS.gene38542:CDS | 55.0% | |
| TATGGAGGTCTGCCGTGGTT+CGG | + | chr3.4:61382858-61382877 | MS.gene38542:CDS | 55.0% | |
| TCAACAACCGCTTTCGCCAC+CGG | - | chr3.4:61382499-61382518 | None:intergenic | 55.0% | |
| TTTGCTGATGCGGTGGCGAT+TGG | + | chr3.4:61382898-61382917 | MS.gene38542:CDS | 55.0% | |
| ! | CGGTCGTTGATAGAACTCGG+CGG | + | chr3.4:61382364-61382383 | MS.gene38542:CDS | 55.0% |
| ! | GGCGATTGGTAGTAGATCCC+CGG | + | chr3.4:61382912-61382931 | MS.gene38542:CDS | 55.0% |
| !! | AGGATGATAGCGGCGGGATT+TGG | + | chr3.4:61382583-61382602 | MS.gene38542:CDS | 55.0% |
| !! | CAGGGAAGTGGTGGATCGAA+TGG | + | chr3.4:61383813-61383832 | MS.gene38542:CDS | 55.0% |
| !! | CGCGAAAAGGATGATAGCGG+CGG | + | chr3.4:61382576-61382595 | MS.gene38542:CDS | 55.0% |
| !! | CGCGCCGACGGTTTTATCAT+TGG | - | chr3.4:61382284-61382303 | None:intergenic | 55.0% |
| !! | GCGAAAAGGATGATAGCGGC+GGG | + | chr3.4:61382577-61382596 | MS.gene38542:CDS | 55.0% |
| !! | GGATGATAGCGGCGGGATTT+GGG | + | chr3.4:61382584-61382603 | MS.gene38542:CDS | 55.0% |
| ACGTAGAAGACACGCGCCGA+CGG | - | chr3.4:61382296-61382315 | None:intergenic | 60.0% | |
| ATCGGATGAAGACCTCCGCC+AGG | - | chr3.4:61383138-61383157 | None:intergenic | 60.0% | |
| CCAGGAACCACTGCCTTCAC+CGG | - | chr3.4:61383120-61383139 | None:intergenic | 60.0% | |
| CGCAACAAGCTCGTCAACGG+CGG | - | chr3.4:61382236-61382255 | None:intergenic | 60.0% | |
| CGCGTGTCTTCTACGTGCTG+AGG | + | chr3.4:61382300-61382319 | MS.gene38542:CDS | 60.0% | |
| GGTGATCGACGCGCTTCCTT+CGG | + | chr3.4:61382528-61382547 | MS.gene38542:CDS | 60.0% | |
| GTCAACGGCGGAGAGAAACG+CGG | - | chr3.4:61382224-61382243 | None:intergenic | 60.0% | |
| GTGAAGGCAGTGGTTCCTGG+CGG | + | chr3.4:61383120-61383139 | MS.gene38542:CDS | 60.0% | |
| TCGACCTACATGCAGCGCGA+AGG | - | chr3.4:61383182-61383201 | None:intergenic | 60.0% | |
| TCGTGATCCGGTGAAGGCAG+TGG | + | chr3.4:61383110-61383129 | MS.gene38542:CDS | 60.0% | |
| TCTCTCCTCGGAGATTCCCG+CGG | + | chr3.4:61382189-61382208 | MS.gene38542:CDS | 60.0% | |
| ! | GATAGCGGCGGGATTTGGGA+AGG | + | chr3.4:61382588-61382607 | MS.gene38542:CDS | 60.0% |
| AACGGCGGAGAGAAACGCGG+CGG | - | chr3.4:61382221-61382240 | None:intergenic | 65.0% | |
| AAGGCAGTGGTTCCTGGCGG+AGG | + | chr3.4:61383123-61383142 | MS.gene38542:CDS | 65.0% | |
| CCGGTGAAGGCAGTGGTTCC+TGG | + | chr3.4:61383117-61383136 | MS.gene38542:CDS | 65.0% | |
| CTCGGCGGCGCGTCGTTTAA+CGG | + | chr3.4:61382379-61382398 | MS.gene38542:CDS | 65.0% | |
| TCGGCGGCGCGTCGTTTAAC+GGG | + | chr3.4:61382380-61382399 | MS.gene38542:CDS | 65.0% | |
| AAACGCGGCGGAAGCTGCCG+CGG | - | chr3.4:61382209-61382228 | None:intergenic | 70.0% | |
| AGCTGCCGCGGGAATCTCCG+AGG | - | chr3.4:61382197-61382216 | None:intergenic | 70.0% | |
| CGACGCGCTTCCTTCGGCGA+CGG | + | chr3.4:61382534-61382553 | MS.gene38542:CDS | 70.0% | |
| CGGCGGCGCGTCGTTTAACG+GGG | + | chr3.4:61382381-61382400 | MS.gene38542:CDS | 70.0% | |
| AACGCGGCGGAAGCTGCCGC+GGG | - | chr3.4:61382208-61382227 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 61381962 | 61383848 | 61381962 | ID=MS.gene38542 |
| chr3.4 | mRNA | 61381962 | 61383848 | 61381962 | ID=MS.gene38542.t1;Parent=MS.gene38542 |
| chr3.4 | exon | 61381962 | 61383848 | 61381962 | ID=MS.gene38542.t1.exon1;Parent=MS.gene38542.t1 |
| chr3.4 | CDS | 61381962 | 61383848 | 61381962 | ID=cds.MS.gene38542.t1;Parent=MS.gene38542.t1 |
| Gene Sequence |
| Protein sequence |
