Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40320.t1 | XP_013461991.1 | 97.6 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 2.80E-156 | 561.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40320.t1 | G7ZWD3 | 97.6 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 2.0e-156 | 561.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene40320 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene40320 | 0.876141 | 1.77E-68 | -1.69E-46 |
| MS.gene049419 | MS.gene40320 | -0.800068 | 1.71E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene40320 | 0.815478 | 9.06E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene40320 | 0.821347 | 4.24E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene40320 | 0.814798 | 1.28E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene40320 | 0.815194 | 1.05E-51 | -1.69E-46 |
| MS.gene052534 | MS.gene40320 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene052674 | MS.gene40320 | 0.808539 | 2.95E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene40320 | 0.809909 | 1.50E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene40320 | 0.811699 | 6.14E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene40320 | 0.813458 | 2.53E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene40320 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene054222 | MS.gene40320 | 0.835038 | 2.12E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene40320 | 0.826527 | 2.58E-54 | -1.69E-46 |
| MS.gene054957 | MS.gene40320 | 0.837528 | 4.93E-57 | -1.69E-46 |
| MS.gene055724 | MS.gene40320 | 0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene40320 | 0.817068 | 3.99E-52 | -1.69E-46 |
| MS.gene056068 | MS.gene40320 | 0.81371 | 2.23E-51 | -1.69E-46 |
| MS.gene056272 | MS.gene40320 | 0.808661 | 2.78E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene40320 | 0.812608 | 3.89E-51 | -1.69E-46 |
| MS.gene056779 | MS.gene40320 | 0.808355 | 3.23E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene40320 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene40320 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene057155 | MS.gene40320 | 0.817453 | 3.27E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene40320 | 0.831796 | 1.36E-55 | -1.69E-46 |
| MS.gene058159 | MS.gene40320 | 0.825517 | 4.49E-54 | -1.69E-46 |
| MS.gene058223 | MS.gene40320 | -0.838719 | 2.43E-57 | -1.69E-46 |
| MS.gene058279 | MS.gene40320 | 0.831429 | 1.68E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene40320 | 0.818597 | 1.80E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene40320 | -0.829369 | 5.35E-55 | -1.69E-46 |
| MS.gene059952 | MS.gene40320 | 0.806852 | 6.73E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene40320 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene060527 | MS.gene40320 | 0.848529 | 5.78E-60 | -1.69E-46 |
| MS.gene060777 | MS.gene40320 | 0.805275 | 1.44E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene40320 | 0.81458 | 1.43E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene40320 | 0.81617 | 6.35E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene40320 | 0.83457 | 2.78E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40320.t1 | MTR_3g110075 | 97.595 | 291 | 7 | 0 | 1 | 291 | 1 | 291 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40320.t1 | AT4G32750 | 70.890 | 292 | 81 | 4 | 1 | 289 | 1 | 291 | 2.49e-149 | 420 |
Find 71 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTCTGGTGTGACTTCC+AGG | 0.173211 | 3.4:+94963568 | None:intergenic |
| AAGAGATTGCTGATTATTAT+TGG | 0.182493 | 3.4:-94966172 | MS.gene40320:CDS |
| GGTCTTCTTGCCTTGTTTCT+TGG | 0.182887 | 3.4:-94963780 | MS.gene40320:CDS |
| TTTCATTTGTGGCTATAATT+TGG | 0.200176 | 3.4:-94966355 | MS.gene40320:CDS |
| CTTATATTTGCCATCATCTT+TGG | 0.254772 | 3.4:-94963801 | MS.gene40320:CDS |
| TCTTATTCGGATTTGATTCC+TGG | 0.295591 | 3.4:-94966215 | MS.gene40320:CDS |
| AATGAAAGGTCGCTCTTATT+CGG | 0.302311 | 3.4:-94966228 | MS.gene40320:CDS |
| ACTGCTCTACACCTTTGTTT+TGG | 0.329684 | 3.4:-94963731 | MS.gene40320:CDS |
| TCCGGTGTCTATCTCATTGC+TGG | 0.337459 | 3.4:-94966110 | MS.gene40320:intron |
| CTTGATGAGGGGAACTTTAG+TGG | 0.364392 | 3.4:-94963627 | MS.gene40320:CDS |
| GTGGCACTGCCTTCTTCCTT+AGG | 0.383252 | 3.4:-94963668 | MS.gene40320:CDS |
| TGGGGACTGGCTGTTCTATA+CGG | 0.395474 | 3.4:-94963690 | MS.gene40320:CDS |
| GGAAGAGACCGTTCTGCGTT+CGG | 0.403568 | 3.4:-94966274 | MS.gene40320:CDS |
| ACCAGTGACAATTTCATTTG+TGG | 0.403972 | 3.4:-94966366 | MS.gene40320:CDS |
| CGATCATCAGCGACGCGCTT+CGG | 0.420852 | 3.4:-94966460 | MS.gene40320:CDS |
| AAAATTCAATCGATGGAAAT+CGG | 0.427331 | 3.4:-94966251 | MS.gene40320:CDS |
| TTCAAGCATCCATGCCTTGT+TGG | 0.435009 | 3.4:+94964022 | None:intergenic |
| TTAACACGTCTTTCCACCTC+TGG | 0.444646 | 3.4:+94963555 | None:intergenic |
| CTTCTTCATCAGAAGAAAGA+AGG | 0.451743 | 3.4:+94963502 | None:intergenic |
| CACTATCTTCAAACTGATAA+CGG | 0.459290 | 3.4:+94966313 | None:intergenic |
| CACCTCTGGTGTGACTTCCA+GGG | 0.459673 | 3.4:+94963569 | None:intergenic |
| TAACACATACTAACTCAAAC+AGG | 0.463981 | 3.4:-94963446 | MS.gene40320:CDS |
| AACTTTAGTGGACGAAATCT+AGG | 0.466968 | 3.4:-94963615 | MS.gene40320:CDS |
| TAATTATTGTGCCTCAAGAC+GGG | 0.468815 | 3.4:-94963987 | MS.gene40320:CDS |
| AACAAGGCATGGATGCTTGA+AGG | 0.470550 | 3.4:-94964020 | MS.gene40320:CDS |
| TGCCTTCTTCCTTAGGAGAA+AGG | 0.473615 | 3.4:-94963661 | MS.gene40320:CDS |
| TGAAGTTGCATCGTGGGGAC+TGG | 0.485724 | 3.4:-94963703 | MS.gene40320:CDS |
| TCAAAGCTGCCTTTCTCCTA+AGG | 0.491008 | 3.4:+94963652 | None:intergenic |
| GTGGAAAGACGTGTTAATGA+AGG | 0.498476 | 3.4:-94963549 | MS.gene40320:CDS |
| AAATCTAGGTCTCGAAATGT+TGG | 0.502049 | 3.4:-94963601 | MS.gene40320:CDS |
| GTGCTATGAAGTTGCATCGT+GGG | 0.504117 | 3.4:-94963709 | MS.gene40320:CDS |
| GGCAAATATAAGATTCAAGA+TGG | 0.504720 | 3.4:+94963812 | None:intergenic |
| GATTGCTGATTATTATTGGA+TGG | 0.521186 | 3.4:-94966168 | MS.gene40320:CDS |
| GGTCTCTTCCCATCGCTAGC+GGG | 0.539658 | 3.4:+94966287 | None:intergenic |
| GGCAGCTTTGATTCTTGATG+AGG | 0.540996 | 3.4:-94963640 | MS.gene40320:CDS |
| AGATGAACCCGACAGTTATG+AGG | 0.542891 | 3.4:-94963481 | MS.gene40320:CDS |
| GCAGCTTTGATTCTTGATGA+GGG | 0.544566 | 3.4:-94963639 | MS.gene40320:CDS |
| ACCTCTGGTGTGACTTCCAG+GGG | 0.544649 | 3.4:+94963570 | None:intergenic |
| AGGACGAAAACGATTAAAGA+AGG | 0.547651 | 3.4:+94966134 | None:intergenic |
| GGTGCCTCCTCATAACTGTC+GGG | 0.550248 | 3.4:+94963474 | None:intergenic |
| TGCCTTTCTCCTAAGGAAGA+AGG | 0.551094 | 3.4:+94963659 | None:intergenic |
| AATGTTGGAAACGACTCCCC+TGG | 0.551564 | 3.4:-94963586 | MS.gene40320:CDS |
| TAGTGTTTCCCGCTAGCGAT+GGG | 0.551886 | 3.4:-94966295 | MS.gene40320:CDS |
| AGACTCTCGTACTCGCGCTT+CGG | 0.553979 | 3.4:+94966425 | None:intergenic |
| CAGCTTTGATTCTTGATGAG+GGG | 0.556917 | 3.4:-94963638 | MS.gene40320:CDS |
| CGTTCGGAAAATTCAATCGA+TGG | 0.558203 | 3.4:-94966258 | MS.gene40320:CDS |
| TATTCTGCTCCAACAAGGCA+TGG | 0.560890 | 3.4:-94964031 | MS.gene40320:CDS |
| AGGTGCCTCCTCATAACTGT+CGG | 0.561586 | 3.4:+94963473 | None:intergenic |
| GCCACAAATGAAATTGTCAC+TGG | 0.562793 | 3.4:+94966365 | None:intergenic |
| GGCAAGAAGACCAAAGATGA+TGG | 0.563964 | 3.4:+94963791 | None:intergenic |
| CCTGGAAGTCACACCAGAGG+TGG | 0.567023 | 3.4:-94963568 | MS.gene40320:CDS |
| TCGATGGAAATCGGAATGAA+AGG | 0.567444 | 3.4:-94966242 | MS.gene40320:CDS |
| ATAATTATTGTGCCTCAAGA+CGG | 0.574754 | 3.4:-94963988 | MS.gene40320:CDS |
| GAGTTAGTATGTGTTAAATG+AGG | 0.584257 | 3.4:+94963453 | None:intergenic |
| TTCTTCATCAGAAGAAAGAA+GGG | 0.593967 | 3.4:+94963503 | None:intergenic |
| ATAGTGTTTCCCGCTAGCGA+TGG | 0.597856 | 3.4:-94966296 | MS.gene40320:CDS |
| AGGAATCATACCCCGTCTTG+AGG | 0.627249 | 3.4:+94963976 | None:intergenic |
| TAGCTTATTCTGCTCCAACA+AGG | 0.640634 | 3.4:-94964036 | MS.gene40320:CDS |
| ACCAGCAATGAGATAGACAC+CGG | 0.651460 | 3.4:+94966109 | None:intergenic |
| TGCTATGAAGTTGCATCGTG+GGG | 0.654514 | 3.4:-94963708 | MS.gene40320:CDS |
| ACTTCATAGCACCAAAACAA+AGG | 0.655632 | 3.4:+94963720 | None:intergenic |
| CGGTCTCTTCCCATCGCTAG+CGG | 0.659732 | 3.4:+94966286 | None:intergenic |
| GAGACTTGAACCAAGAAACA+AGG | 0.665859 | 3.4:+94963770 | None:intergenic |
| AATTATTGTGCCTCAAGACG+GGG | 0.668970 | 3.4:-94963986 | MS.gene40320:intron |
| CAATGAGATAGACACCGGAA+AGG | 0.686523 | 3.4:+94966114 | None:intergenic |
| TGAACCCGACAGTTATGAGG+AGG | 0.687114 | 3.4:-94963478 | MS.gene40320:CDS |
| GGTGCTATGAAGTTGCATCG+TGG | 0.696072 | 3.4:-94963710 | MS.gene40320:CDS |
| TCCCCTGGAAGTCACACCAG+AGG | 0.697428 | 3.4:-94963571 | MS.gene40320:CDS |
| GGACTGGCTGTTCTATACGG+TGG | 0.702888 | 3.4:-94963687 | MS.gene40320:CDS |
| GATTCAAGATGGATAGACAG+CGG | 0.704294 | 3.4:+94963823 | None:intergenic |
| AAGGCATGGATGCTTGAAGG+TGG | 0.715096 | 3.4:-94964017 | MS.gene40320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTAAAATTATTTGATT+TGG | + | chr3.4:94964731-94964750 | None:intergenic | 10.0% |
| !! | AATATAAAATACTAAAACAT+CGG | + | chr3.4:94965818-94965837 | None:intergenic | 10.0% |
| !! | TATAATAAATAAGACAATAT+AGG | - | chr3.4:94964084-94964103 | MS.gene40320:intron | 10.0% |
| !! | TCATTCTTTAAATAAATATT+TGG | + | chr3.4:94965530-94965549 | None:intergenic | 10.0% |
| !!! | AATTAATTGAAGTTTTATAT+TGG | - | chr3.4:94966034-94966053 | MS.gene40320:intron | 10.0% |
| !! | AAATATATTCTCCATAATTA+TGG | + | chr3.4:94965786-94965805 | None:intergenic | 15.0% |
| !! | TTAGATTCAAATTTATAAAG+AGG | + | chr3.4:94964503-94964522 | None:intergenic | 15.0% |
| !! | TTATATTATAATTATCTTGC+AGG | - | chr3.4:94965831-94965850 | MS.gene40320:intron | 15.0% |
| !!! | TTATTTTAGAAATCTGTAAA+AGG | + | chr3.4:94964928-94964947 | None:intergenic | 15.0% |
| !! | AAACTTAAAGAGAAACTATT+AGG | - | chr3.4:94965350-94965369 | MS.gene40320:intron | 20.0% |
| !! | ACCAGGAATATAAATAAAAT+AGG | + | chr3.4:94965683-94965702 | None:intergenic | 20.0% |
| !! | TAAGATTTATAGTATTCTAG+AGG | - | chr3.4:94964520-94964539 | MS.gene40320:intron | 20.0% |
| !! | TTCAAGAAGACAATTAAAAA+AGG | + | chr3.4:94965031-94965050 | None:intergenic | 20.0% |
| !!! | AAACTATGGTTTTATTCAAT+AGG | - | chr3.4:94965121-94965140 | MS.gene40320:intron | 20.0% |
| !!! | AATTAAAAAAGGATTAGTTC+TGG | + | chr3.4:94965020-94965039 | None:intergenic | 20.0% |
| !!! | ACCTATTTTATTTATATTCC+TGG | - | chr3.4:94965679-94965698 | MS.gene40320:intron | 20.0% |
| !!! | TATTATCTTGTTTAACTAGA+AGG | - | chr3.4:94965704-94965723 | MS.gene40320:intron | 20.0% |
| ! | AAAATTCAATCGATGGAAAT+CGG | - | chr3.4:94963647-94963666 | MS.gene40320:CDS | 25.0% |
| ! | ATAAAAGTTACACAAATGCA+AGG | + | chr3.4:94964589-94964608 | None:intergenic | 25.0% |
| ! | ATCTGTAAAAGGAAATTACA+TGG | + | chr3.4:94964917-94964936 | None:intergenic | 25.0% |
| ! | ATGATCTTGAACATATTTGA+TGG | - | chr3.4:94965054-94965073 | MS.gene40320:intron | 25.0% |
| ! | GAATATAAGTTTGCAAACTA+TGG | - | chr3.4:94965107-94965126 | MS.gene40320:intron | 25.0% |
| ! | GTACAGTAAAAAACAAGTTA+TGG | + | chr3.4:94965588-94965607 | None:intergenic | 25.0% |
| ! | GTTAAACAAGATAATATACC+AGG | + | chr3.4:94965700-94965719 | None:intergenic | 25.0% |
| ! | GTTATTGAAAAAATCCAACA+AGG | + | chr3.4:94964881-94964900 | None:intergenic | 25.0% |
| ! | TAAAGAGAAACTATTAGGAA+AGG | - | chr3.4:94965355-94965374 | MS.gene40320:intron | 25.0% |
| ! | TAGAAAAGATGGTAGAAAAT+AGG | - | chr3.4:94965229-94965248 | MS.gene40320:intron | 25.0% |
| ! | TCATAAACTAGACAAGTTTA+TGG | + | chr3.4:94964403-94964422 | None:intergenic | 25.0% |
| ! | TTTCATTTGTGGCTATAATT+TGG | - | chr3.4:94963543-94963562 | MS.gene40320:CDS | 25.0% |
| !! | AAAGCTTTATGCCATAATTA+TGG | - | chr3.4:94965772-94965791 | MS.gene40320:intron | 25.0% |
| !! | AAGAGATTGCTGATTATTAT+TGG | - | chr3.4:94963726-94963745 | MS.gene40320:CDS | 25.0% |
| !! | TGTAGATATAATCCTTTTCA+TGG | - | chr3.4:94964197-94964216 | MS.gene40320:intron | 25.0% |
| !! | TTTTATATTGGATAACCTAC+AGG | - | chr3.4:94966046-94966065 | MS.gene40320:intron | 25.0% |
| !!! | CTTGTCTAGTTTATGATTTT+TGG | - | chr3.4:94964407-94964426 | MS.gene40320:intron | 25.0% |
| !!! | GAAGAGAAGTGTTATAAAAT+AGG | + | chr3.4:94965620-94965639 | None:intergenic | 25.0% |
| !!! | GTTTCTCTTTAAGTTTTTCT+AGG | + | chr3.4:94965346-94965365 | None:intergenic | 25.0% |
| !!! | TAGAAGGTAATTCTGTTTTT+TGG | - | chr3.4:94965720-94965739 | MS.gene40320:intron | 25.0% |
| !!! | TGTTGGATTTTTTCAATAAC+AGG | - | chr3.4:94964881-94964900 | MS.gene40320:intron | 25.0% |
| !!! | TTAATGAAGGTTTTAAAGCA+TGG | - | chr3.4:94966362-94966381 | MS.gene40320:CDS | 25.0% |
| AAAACAAGTTATGGATCAAG+AGG | + | chr3.4:94965579-94965598 | None:intergenic | 30.0% | |
| AAACAAGTTATGGATCAAGA+GGG | + | chr3.4:94965578-94965597 | None:intergenic | 30.0% | |
| AAAGGATATTAGCGTATGTT+TGG | - | chr3.4:94963891-94963910 | MS.gene40320:intron | 30.0% | |
| AAATACTAAAACATCGGCAA+AGG | + | chr3.4:94965812-94965831 | None:intergenic | 30.0% | |
| AAATTCCATCTCTGTTATGT+TGG | - | chr3.4:94964817-94964836 | MS.gene40320:intron | 30.0% | |
| AGGTTTAGAGATTAATGAGT+TGG | - | chr3.4:94965375-94965394 | MS.gene40320:intron | 30.0% | |
| ATAATTATTGTGCCTCAAGA+CGG | - | chr3.4:94965910-94965929 | MS.gene40320:intron | 30.0% | |
| ATGCGTAGCTAGAAAATAAA+AGG | - | chr3.4:94963873-94963892 | MS.gene40320:intron | 30.0% | |
| ATTAGAAAGCCTAATGAAGA+TGG | - | chr3.4:94964266-94964285 | MS.gene40320:intron | 30.0% | |
| CAACTCTTGAATTGACAAAT+TGG | + | chr3.4:94964794-94964813 | None:intergenic | 30.0% | |
| CACTATCTTCAAACTGATAA+CGG | + | chr3.4:94963588-94963607 | None:intergenic | 30.0% | |
| CTTATATTTGCCATCATCTT+TGG | - | chr3.4:94966097-94966116 | MS.gene40320:intron | 30.0% | |
| GAGTTAGTATGTGTTAAATG+AGG | + | chr3.4:94966448-94966467 | None:intergenic | 30.0% | |
| GGCAAATATAAGATTCAAGA+TGG | + | chr3.4:94966089-94966108 | None:intergenic | 30.0% | |
| GTAAAAGGAAATTACATGGT+TGG | + | chr3.4:94964913-94964932 | None:intergenic | 30.0% | |
| TAACACATACTAACTCAAAC+AGG | - | chr3.4:94966452-94966471 | MS.gene40320:CDS | 30.0% | |
| TACTCTTCTTACTACAACAT+AGG | + | chr3.4:94965282-94965301 | None:intergenic | 30.0% | |
| TATTAGAGAATTTGACCACT+TGG | - | chr3.4:94964545-94964564 | MS.gene40320:intron | 30.0% | |
| TGACATTAACCATCTTCATT+AGG | + | chr3.4:94964278-94964297 | None:intergenic | 30.0% | |
| TGGATCAAATTACACCATAA+TGG | + | chr3.4:94965424-94965443 | None:intergenic | 30.0% | |
| TTCTTCATCAGAAGAAAGAA+GGG | + | chr3.4:94966398-94966417 | None:intergenic | 30.0% | |
| TTTGGATGAAGCAAACTATA+TGG | + | chr3.4:94964713-94964732 | None:intergenic | 30.0% | |
| ! | GATTGCTGATTATTATTGGA+TGG | - | chr3.4:94963730-94963749 | MS.gene40320:CDS | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr3.4:94965387-94965406 | MS.gene40320:intron | 30.0% |
| ! | TCTACCATCTTTTCTACTAT+AGG | + | chr3.4:94965225-94965244 | None:intergenic | 30.0% |
| ! | TGAACATATTTGATGGTTTG+TGG | - | chr3.4:94965061-94965080 | MS.gene40320:intron | 30.0% |
| !! | ACCTTAATTTGCAGTATGTT+TGG | + | chr3.4:94965166-94965185 | None:intergenic | 30.0% |
| !! | TTGCACATTAATTTGCAGTT+TGG | + | chr3.4:94965499-94965518 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCTAGCTACGCA+TGG | + | chr3.4:94963874-94963893 | None:intergenic | 30.0% |
| AAATCTAGGTCTCGAAATGT+TGG | - | chr3.4:94966297-94966316 | MS.gene40320:CDS | 35.0% | |
| AACAAGTTATGGATCAAGAG+GGG | + | chr3.4:94965577-94965596 | None:intergenic | 35.0% | |
| AATGAAAGGTCGCTCTTATT+CGG | - | chr3.4:94963670-94963689 | MS.gene40320:CDS | 35.0% | |
| ACATCCAAGATTTGAGAATG+TGG | + | chr3.4:94964676-94964695 | None:intergenic | 35.0% | |
| ACCAGTGACAATTTCATTTG+TGG | - | chr3.4:94963532-94963551 | MS.gene40320:CDS | 35.0% | |
| ACTTCATAGCACCAAAACAA+AGG | + | chr3.4:94966181-94966200 | None:intergenic | 35.0% | |
| AGATGGTAGAAAATAGGCTT+AGG | - | chr3.4:94965235-94965254 | MS.gene40320:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGA+TGG | - | chr3.4:94965218-94965237 | MS.gene40320:intron | 35.0% | |
| AGGACGAAAACGATTAAAGA+AGG | + | chr3.4:94963767-94963786 | None:intergenic | 35.0% | |
| AGGAGAGTCAGATCAAAATA+GGG | - | chr3.4:94965312-94965331 | MS.gene40320:intron | 35.0% | |
| AGTAAGAAGAGTAGATCAGA+TGG | - | chr3.4:94965289-94965308 | MS.gene40320:intron | 35.0% | |
| ATGGTGAAATCACAGCTATA+AGG | - | chr3.4:94964216-94964235 | MS.gene40320:intron | 35.0% | |
| ATTACATGCAATCTCATCTC+TGG | + | chr3.4:94964020-94964039 | None:intergenic | 35.0% | |
| CTTCTTCATCAGAAGAAAGA+AGG | + | chr3.4:94966399-94966418 | None:intergenic | 35.0% | |
| GCCAAACATACTGCAAATTA+AGG | - | chr3.4:94965162-94965181 | MS.gene40320:intron | 35.0% | |
| GGTCTATGATACACCATATT+TGG | + | chr3.4:94965403-94965422 | None:intergenic | 35.0% | |
| GTGAAAATATCAGACAGTAG+AGG | + | chr3.4:94965945-94965964 | None:intergenic | 35.0% | |
| TAATTATTGTGCCTCAAGAC+GGG | - | chr3.4:94965911-94965930 | MS.gene40320:intron | 35.0% | |
| TATATTGGATAACCTACAGG+TGG | - | chr3.4:94966049-94966068 | MS.gene40320:intron | 35.0% | |
| TCAAATATGCTCTTAGCTGT+TGG | + | chr3.4:94965089-94965108 | None:intergenic | 35.0% | |
| TCAGAGAAGAAGAAAAAGCA+TGG | - | chr3.4:94963495-94963514 | MS.gene40320:CDS | 35.0% | |
| TCTTATTCGGATTTGATTCC+TGG | - | chr3.4:94963683-94963702 | MS.gene40320:CDS | 35.0% | |
| TGGTGTATCATAGACCATTA+TGG | - | chr3.4:94965407-94965426 | MS.gene40320:intron | 35.0% | |
| TTACATGCAATCTCATCTCT+GGG | + | chr3.4:94964019-94964038 | None:intergenic | 35.0% | |
| TTAGCGTATGTTTGGATTCA+CGG | - | chr3.4:94963899-94963918 | MS.gene40320:intron | 35.0% | |
| TTGAATTGACAAATTGGTGC+AGG | + | chr3.4:94964788-94964807 | None:intergenic | 35.0% | |
| TTTGAGCTTCTGTAAAACCA+GGG | - | chr3.4:94963983-94964002 | MS.gene40320:intron | 35.0% | |
| ! | AACAAATTTCAAGAGTGTGC+TGG | - | chr3.4:94964152-94964171 | MS.gene40320:intron | 35.0% |
| ! | AACTTTAGTGGACGAAATCT+AGG | - | chr3.4:94966283-94966302 | MS.gene40320:CDS | 35.0% |
| ! | AGAGAAGAAGAAAAAGCATG+GGG | - | chr3.4:94963497-94963516 | MS.gene40320:CDS | 35.0% |
| ! | CAGAGAAGAAGAAAAAGCAT+GGG | - | chr3.4:94963496-94963515 | MS.gene40320:CDS | 35.0% |
| ! | GGGAAGTACAAAATAGAGAA+TGG | + | chr3.4:94965557-94965576 | None:intergenic | 35.0% |
| ! | TCTAAGATGAAAGTCGAGAA+GGG | - | chr3.4:94964622-94964641 | MS.gene40320:intron | 35.0% |
| ! | TTAATCGTTTTCGTCCTTTC+CGG | - | chr3.4:94963770-94963789 | MS.gene40320:CDS | 35.0% |
| ! | TTTTGAGCTTCTGTAAAACC+AGG | - | chr3.4:94963982-94964001 | MS.gene40320:intron | 35.0% |
| !! | TCAGTAAGATAAAAAGCACC+AGG | + | chr3.4:94963704-94963723 | None:intergenic | 35.0% |
| !! | TTCTAAGATGAAAGTCGAGA+AGG | - | chr3.4:94964621-94964640 | MS.gene40320:intron | 35.0% |
| !!! | CTGACACTGGAGAATTTTTT+TGG | - | chr3.4:94966008-94966027 | MS.gene40320:intron | 35.0% |
| !!! | GAAGGTTTTAAAGCATGGAT+GGG | - | chr3.4:94966367-94966386 | MS.gene40320:CDS | 35.0% |
| !!! | TGAAGGTTTTAAAGCATGGA+TGG | - | chr3.4:94966366-94966385 | MS.gene40320:CDS | 35.0% |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr3.4:94965292-94965311 | MS.gene40320:intron | 40.0% | |
| AATTATTGTGCCTCAAGACG+GGG | - | chr3.4:94965912-94965931 | MS.gene40320:intron | 40.0% | |
| ACAGTCCAACATAACAGAGA+TGG | + | chr3.4:94964825-94964844 | None:intergenic | 40.0% | |
| AGTCAGATCAAAATAGGGAG+AGG | - | chr3.4:94965317-94965336 | MS.gene40320:intron | 40.0% | |
| AGTGCCACATTCTCAAATCT+TGG | - | chr3.4:94964669-94964688 | MS.gene40320:intron | 40.0% | |
| CAAAAAATCCTCCGTCTCAA+AGG | + | chr3.4:94964125-94964144 | None:intergenic | 40.0% | |
| CCAGTGTCAGATGAAAAATG+AGG | + | chr3.4:94965998-94966017 | None:intergenic | 40.0% | |
| CGTTCGGAAAATTCAATCGA+TGG | - | chr3.4:94963640-94963659 | MS.gene40320:CDS | 40.0% | |
| CTAAGATGAAAGTCGAGAAG+GGG | - | chr3.4:94964623-94964642 | MS.gene40320:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3.4:94965243-94965262 | MS.gene40320:intron | 40.0% | |
| GAGACTTGAACCAAGAAACA+AGG | + | chr3.4:94966131-94966150 | None:intergenic | 40.0% | |
| GAGGAGAGTCAGATCAAAAT+AGG | - | chr3.4:94965311-94965330 | MS.gene40320:intron | 40.0% | |
| GATTCAAGATGGATAGACAG+CGG | + | chr3.4:94966078-94966097 | None:intergenic | 40.0% | |
| GCCACAAATGAAATTGTCAC+TGG | + | chr3.4:94963536-94963555 | None:intergenic | 40.0% | |
| GCTGTGATTTCACCATGAAA+AGG | + | chr3.4:94964212-94964231 | None:intergenic | 40.0% | |
| GTGCAAACTGCAATCCAATA+GGG | - | chr3.4:94965184-94965203 | MS.gene40320:intron | 40.0% | |
| GTGGAAAGACGTGTTAATGA+AGG | - | chr3.4:94966349-94966368 | MS.gene40320:CDS | 40.0% | |
| TAGCTTATTCTGCTCCAACA+AGG | - | chr3.4:94965862-94965881 | MS.gene40320:intron | 40.0% | |
| TATGTCCTTCTGTGCACTTT+CGG | - | chr3.4:94965966-94965985 | MS.gene40320:intron | 40.0% | |
| TCGATGGAAATCGGAATGAA+AGG | - | chr3.4:94963656-94963675 | MS.gene40320:CDS | 40.0% | |
| TGGTAGAAAATAGGCTTAGG+TGG | - | chr3.4:94965238-94965257 | MS.gene40320:intron | 40.0% | |
| TTCAGTACAATCGACCTTGT+TGG | - | chr3.4:94964864-94964883 | MS.gene40320:intron | 40.0% | |
| ! | AGAGTGTGCTGGTAGAAAAT+AGG | - | chr3.4:94964163-94964182 | MS.gene40320:intron | 40.0% |
| ! | CAGCTTTGATTCTTGATGAG+GGG | - | chr3.4:94966260-94966279 | MS.gene40320:CDS | 40.0% |
| ! | GAGTGTGCTGGTAGAAAATA+GGG | - | chr3.4:94964164-94964183 | MS.gene40320:intron | 40.0% |
| ! | GCAGCTTTGATTCTTGATGA+GGG | - | chr3.4:94966259-94966278 | MS.gene40320:CDS | 40.0% |
| ! | TAGTCCAGAGCATGATAATG+TGG | + | chr3.4:94964971-94964990 | None:intergenic | 40.0% |
| ! | TGAATTTTCCGAACGCAGAA+CGG | + | chr3.4:94963635-94963654 | None:intergenic | 40.0% |
| !! | ACTGCTCTACACCTTTGTTT+TGG | - | chr3.4:94966167-94966186 | MS.gene40320:CDS | 40.0% |
| !! | ATTTCCAGAAAAGCACCAAG+TGG | + | chr3.4:94964563-94964582 | None:intergenic | 40.0% |
| !! | CCTCATTTTTCATCTGACAC+TGG | - | chr3.4:94965995-94966014 | MS.gene40320:intron | 40.0% |
| !!! | CTTTGAGACGGAGGATTTTT+TGG | - | chr3.4:94964123-94964142 | MS.gene40320:intron | 40.0% |
| AACAAGGCATGGATGCTTGA+AGG | - | chr3.4:94965878-94965897 | MS.gene40320:intron | 45.0% | |
| ACCAGCAATGAGATAGACAC+CGG | + | chr3.4:94963792-94963811 | None:intergenic | 45.0% | |
| ACTAAGTGGGGTCGGTTAAA+TGG | + | chr3.4:94965444-94965463 | None:intergenic | 45.0% | |
| AGATGAACCCGACAGTTATG+AGG | - | chr3.4:94966417-94966436 | MS.gene40320:CDS | 45.0% | |
| ATGCAATCTCATCTCTGGGT+AGG | + | chr3.4:94964015-94964034 | None:intergenic | 45.0% | |
| ATTTAACCGACCCCACTTAG+TGG | - | chr3.4:94965443-94965462 | MS.gene40320:intron | 45.0% | |
| CAATCCAATAGGGAGAGTTG+GGG | - | chr3.4:94965194-94965213 | MS.gene40320:intron | 45.0% | |
| CAATGAGATAGACACCGGAA+AGG | + | chr3.4:94963787-94963806 | None:intergenic | 45.0% | |
| CTTCTGTGCACTTTCGGTTA+AGG | - | chr3.4:94965972-94965991 | MS.gene40320:intron | 45.0% | |
| CTTGATGAGGGGAACTTTAG+TGG | - | chr3.4:94966271-94966290 | MS.gene40320:CDS | 45.0% | |
| GAGAGACGTGATGCTTAGAA+TGG | - | chr3.4:94964360-94964379 | MS.gene40320:intron | 45.0% | |
| GCAATCCAATAGGGAGAGTT+GGG | - | chr3.4:94965193-94965212 | MS.gene40320:intron | 45.0% | |
| GGCAAGAAGACCAAAGATGA+TGG | + | chr3.4:94966110-94966129 | None:intergenic | 45.0% | |
| GGTGCAAACTGCAATCCAAT+AGG | - | chr3.4:94965183-94965202 | MS.gene40320:intron | 45.0% | |
| GTGCTATGAAGTTGCATCGT+GGG | - | chr3.4:94966189-94966208 | MS.gene40320:CDS | 45.0% | |
| TATTCTGCTCCAACAAGGCA+TGG | - | chr3.4:94965867-94965886 | MS.gene40320:intron | 45.0% | |
| TCAAAGCTGCCTTTCTCCTA+AGG | + | chr3.4:94966249-94966268 | None:intergenic | 45.0% | |
| TGCAATCCAATAGGGAGAGT+TGG | - | chr3.4:94965192-94965211 | MS.gene40320:intron | 45.0% | |
| TGCCTTCTTCCTTAGGAGAA+AGG | - | chr3.4:94966237-94966256 | MS.gene40320:CDS | 45.0% | |
| TGCCTTTCTCCTAAGGAAGA+AGG | + | chr3.4:94966242-94966261 | None:intergenic | 45.0% | |
| TGCTATGAAGTTGCATCGTG+GGG | - | chr3.4:94966190-94966209 | MS.gene40320:CDS | 45.0% | |
| TTAACACGTCTTTCCACCTC+TGG | + | chr3.4:94966346-94966365 | None:intergenic | 45.0% | |
| TTCAAGCATCCATGCCTTGT+TGG | + | chr3.4:94965879-94965898 | None:intergenic | 45.0% | |
| TTTAACCGACCCCACTTAGT+GGG | - | chr3.4:94965444-94965463 | MS.gene40320:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3.4:94965456-94965475 | None:intergenic | 45.0% |
| ! | AGACTGCAGTTCCTTTGAGA+CGG | - | chr3.4:94964111-94964130 | MS.gene40320:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr3.4:94965457-94965476 | None:intergenic | 45.0% |
| ! | CTTAACCGAAAGTGCACAGA+AGG | + | chr3.4:94965974-94965993 | None:intergenic | 45.0% |
| ! | GGCAGCTTTGATTCTTGATG+AGG | - | chr3.4:94966258-94966277 | MS.gene40320:CDS | 45.0% |
| !! | GGTCTTCTTGCCTTGTTTCT+TGG | - | chr3.4:94966118-94966137 | MS.gene40320:CDS | 45.0% |
| !! | TGGTATCGGTTGCTTCTCTT+AGG | + | chr3.4:94964758-94964777 | None:intergenic | 45.0% |
| !!! | TTGACCACTTGGTGCTTTTC+TGG | - | chr3.4:94964556-94964575 | MS.gene40320:intron | 45.0% |
| AAGGCATGGATGCTTGAAGG+TGG | - | chr3.4:94965881-94965900 | MS.gene40320:intron | 50.0% | |
| AATGTTGGAAACGACTCCCC+TGG | - | chr3.4:94966312-94966331 | MS.gene40320:CDS | 50.0% | |
| AGGAATCATACCCCGTCTTG+AGG | + | chr3.4:94965925-94965944 | None:intergenic | 50.0% | |
| AGGTGCCTCCTCATAACTGT+CGG | + | chr3.4:94966428-94966447 | None:intergenic | 50.0% | |
| ATAGTGTTTCCCGCTAGCGA+TGG | - | chr3.4:94963602-94963621 | MS.gene40320:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr3.4:94965455-94965474 | MS.gene40320:intron | 50.0% | |
| CCAGCCACATTATCATGCTC+TGG | - | chr3.4:94964964-94964983 | MS.gene40320:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr3.4:94965452-94965471 | None:intergenic | 50.0% | |
| TAGTGTTTCCCGCTAGCGAT+GGG | - | chr3.4:94963603-94963622 | MS.gene40320:CDS | 50.0% | |
| TCCGGTGTCTATCTCATTGC+TGG | - | chr3.4:94963788-94963807 | MS.gene40320:CDS | 50.0% | |
| TGAACCCGACAGTTATGAGG+AGG | - | chr3.4:94966420-94966439 | MS.gene40320:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr3.4:94965458-94965477 | None:intergenic | 50.0% |
| ! | CCAGAGCATGATAATGTGGC+TGG | + | chr3.4:94964967-94964986 | None:intergenic | 50.0% |
| ! | GGTGCTATGAAGTTGCATCG+TGG | - | chr3.4:94966188-94966207 | MS.gene40320:CDS | 50.0% |
| !! | TGGGGACTGGCTGTTCTATA+CGG | - | chr3.4:94966208-94966227 | MS.gene40320:CDS | 50.0% |
| AAATTGGTGCAGGCTGCAGC+TGG | + | chr3.4:94964778-94964797 | None:intergenic | 55.0% | |
| ACCTCTGGTGTGACTTCCAG+GGG | + | chr3.4:94966331-94966350 | None:intergenic | 55.0% | |
| AGACTCTCGTACTCGCGCTT+CGG | + | chr3.4:94963476-94963495 | None:intergenic | 55.0% | |
| CACCTCTGGTGTGACTTCCA+GGG | + | chr3.4:94966332-94966351 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr3.4:94965450-94965469 | MS.gene40320:intron | 55.0% | |
| GCTACCCCAACTCTCCCTAT+TGG | + | chr3.4:94965201-94965220 | None:intergenic | 55.0% | |
| GGAAGAGACCGTTCTGCGTT+CGG | - | chr3.4:94963624-94963643 | MS.gene40320:CDS | 55.0% | |
| GGTGCCTCCTCATAACTGTC+GGG | + | chr3.4:94966427-94966446 | None:intergenic | 55.0% | |
| GTGGCACTGCCTTCTTCCTT+AGG | - | chr3.4:94966230-94966249 | MS.gene40320:CDS | 55.0% | |
| TGAAGTTGCATCGTGGGGAC+TGG | - | chr3.4:94966195-94966214 | MS.gene40320:CDS | 55.0% | |
| !! | CTGCAGTTCCTTTGAGACGG+AGG | - | chr3.4:94964114-94964133 | MS.gene40320:intron | 55.0% |
| !! | GGACTGGCTGTTCTATACGG+TGG | - | chr3.4:94966211-94966230 | MS.gene40320:CDS | 55.0% |
| CCACCTCTGGTGTGACTTCC+AGG | + | chr3.4:94966333-94966352 | None:intergenic | 60.0% | |
| CCTGGAAGTCACACCAGAGG+TGG | - | chr3.4:94966330-94966349 | MS.gene40320:CDS | 60.0% | |
| CGATCATCAGCGACGCGCTT+CGG | - | chr3.4:94963438-94963457 | MS.gene40320:CDS | 60.0% | |
| CGGTCTCTTCCCATCGCTAG+CGG | + | chr3.4:94963615-94963634 | None:intergenic | 60.0% | |
| CTCTGGGTAGGTGTAGACCC+TGG | + | chr3.4:94964003-94964022 | None:intergenic | 60.0% | |
| GGTCTCTTCCCATCGCTAGC+GGG | + | chr3.4:94963614-94963633 | None:intergenic | 60.0% | |
| GTGCAGGCTGCAGCTGGTAT+CGG | + | chr3.4:94964772-94964791 | None:intergenic | 60.0% | |
| TCCCCTGGAAGTCACACCAG+AGG | - | chr3.4:94966327-94966346 | MS.gene40320:CDS | 60.0% | |
| AGACAGCGGACGCCACCTGT+AGG | + | chr3.4:94966064-94966083 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94963434 | 94966486 | 94963434 | ID=MS.gene40320 |
| chr3.4 | mRNA | 94963434 | 94966486 | 94963434 | ID=MS.gene40320.t1;Parent=MS.gene40320 |
| chr3.4 | exon | 94966111 | 94966486 | 94966111 | ID=MS.gene40320.t1.exon1;Parent=MS.gene40320.t1 |
| chr3.4 | CDS | 94966111 | 94966486 | 94966111 | ID=cds.MS.gene40320.t1;Parent=MS.gene40320.t1 |
| chr3.4 | exon | 94963987 | 94964067 | 94963987 | ID=MS.gene40320.t1.exon2;Parent=MS.gene40320.t1 |
| chr3.4 | CDS | 94963987 | 94964067 | 94963987 | ID=cds.MS.gene40320.t1;Parent=MS.gene40320.t1 |
| chr3.4 | exon | 94963434 | 94963852 | 94963434 | ID=MS.gene40320.t1.exon3;Parent=MS.gene40320.t1 |
| chr3.4 | CDS | 94963434 | 94963852 | 94963434 | ID=cds.MS.gene40320.t1;Parent=MS.gene40320.t1 |
| Gene Sequence |
| Protein sequence |
