Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40493.t1 | AFK42663.1 | 88.6 | 88 | 10 | 0 | 1 | 88 | 10 | 97 | 7.60E-33 | 150.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40493.t1 | Q9LZH5 | 39.3 | 84 | 46 | 2 | 4 | 82 | 30 | 113 | 3.3e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40493.t1 | G7K520 | 88.6 | 88 | 10 | 0 | 1 | 88 | 17 | 104 | 5.5e-33 | 150.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene40493 | 0.82782 | 1.27E-54 | -1.69E-46 |
| MS.gene050082 | MS.gene40493 | 0.833625 | 4.79E-56 | -1.69E-46 |
| MS.gene050381 | MS.gene40493 | 0.851696 | 7.50E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene40493 | -0.801852 | 7.40E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene40493 | 0.823603 | 1.27E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene40493 | 0.821036 | 5.00E-53 | -1.69E-46 |
| MS.gene051138 | MS.gene40493 | 0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene051632 | MS.gene40493 | 0.803722 | 3.04E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene40493 | 0.824375 | 8.35E-54 | -1.69E-46 |
| MS.gene052211 | MS.gene40493 | 0.81124 | 7.73E-51 | -1.69E-46 |
| MS.gene05234 | MS.gene40493 | 0.811018 | 8.63E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene40493 | 0.80016 | 1.64E-48 | -1.69E-46 |
| MS.gene052823 | MS.gene40493 | -0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene40493 | 0.83087 | 2.30E-55 | -1.69E-46 |
| MS.gene053479 | MS.gene40493 | -0.803984 | 2.69E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene40493 | 0.807148 | 5.82E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene40493 | 0.821475 | 3.96E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene40493 | -0.806255 | 8.99E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene40493 | -0.806438 | 8.22E-50 | -1.69E-46 |
| MS.gene056313 | MS.gene40493 | 0.806861 | 6.70E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene40493 | -0.802276 | 6.06E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene40493 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene057014 | MS.gene40493 | 0.808352 | 3.23E-50 | -1.69E-46 |
| MS.gene057261 | MS.gene40493 | 0.83382 | 4.28E-56 | -1.69E-46 |
| MS.gene057717 | MS.gene40493 | 0.836548 | 8.78E-57 | -1.69E-46 |
| MS.gene058067 | MS.gene40493 | 0.874048 | 9.16E-68 | -1.69E-46 |
| MS.gene058068 | MS.gene40493 | 0.906616 | 1.23E-80 | -1.69E-46 |
| MS.gene058157 | MS.gene40493 | -0.804664 | 1.94E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene40493 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene40493 | 0.806479 | 8.06E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene40493 | -0.835917 | 1.27E-56 | -1.69E-46 |
| MS.gene058603 | MS.gene40493 | 0.811657 | 6.27E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene40493 | -0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene40493 | 0.813665 | 2.28E-51 | -1.69E-46 |
| MS.gene059955 | MS.gene40493 | 0.800683 | 1.28E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene40493 | 0.804623 | 1.98E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene40493 | -0.813528 | 2.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40493.t1 | MTR_5g006950 | 93.827 | 81 | 5 | 0 | 1 | 81 | 17 | 97 | 6.70e-47 | 150 |
| MS.gene40493.t1 | MTR_1g103490 | 79.012 | 81 | 17 | 0 | 1 | 81 | 17 | 97 | 3.19e-38 | 127 |
| MS.gene40493.t1 | MTR_7g095230 | 69.231 | 78 | 22 | 1 | 6 | 81 | 25 | 102 | 5.39e-28 | 102 |
| MS.gene40493.t1 | MTR_1g103450 | 59.756 | 82 | 30 | 2 | 1 | 81 | 17 | 96 | 2.83e-24 | 92.0 |
| MS.gene40493.t1 | MTR_1g103470 | 61.538 | 78 | 28 | 1 | 4 | 81 | 20 | 95 | 1.51e-23 | 90.5 |
| MS.gene40493.t1 | MTR_1g097720 | 72.881 | 59 | 13 | 2 | 1 | 58 | 17 | 73 | 2.04e-19 | 77.8 |
| MS.gene40493.t1 | MTR_1g071730 | 63.750 | 80 | 29 | 0 | 2 | 81 | 18 | 97 | 2.42e-16 | 70.5 |
| MS.gene40493.t1 | MTR_1g071730 | 63.750 | 80 | 29 | 0 | 2 | 81 | 18 | 97 | 5.78e-16 | 70.5 |
| MS.gene40493.t1 | MTR_5g070360 | 40.278 | 72 | 40 | 2 | 12 | 81 | 35 | 105 | 3.17e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40493.t1 | AT3G22600 | 66.667 | 75 | 25 | 0 | 7 | 81 | 23 | 97 | 1.64e-28 | 103 |
| MS.gene40493.t1 | AT4G14815 | 61.842 | 76 | 29 | 0 | 6 | 81 | 20 | 95 | 1.31e-25 | 95.5 |
| MS.gene40493.t1 | AT2G48130 | 52.632 | 76 | 36 | 0 | 6 | 81 | 24 | 99 | 1.40e-19 | 80.9 |
| MS.gene40493.t1 | AT2G48130 | 52.632 | 76 | 36 | 0 | 6 | 81 | 24 | 99 | 1.40e-19 | 80.9 |
| MS.gene40493.t1 | AT2G48130 | 52.632 | 76 | 36 | 0 | 6 | 81 | 24 | 99 | 1.40e-19 | 80.9 |
| MS.gene40493.t1 | AT2G48130 | 52.632 | 76 | 36 | 0 | 6 | 81 | 24 | 99 | 1.40e-19 | 80.9 |
| MS.gene40493.t1 | AT2G48130 | 52.632 | 76 | 36 | 0 | 6 | 81 | 24 | 99 | 1.40e-19 | 80.9 |
| MS.gene40493.t1 | AT2G48130 | 52.632 | 76 | 36 | 0 | 6 | 81 | 24 | 99 | 1.40e-19 | 80.9 |
| MS.gene40493.t1 | AT1G03103 | 46.988 | 83 | 42 | 2 | 1 | 81 | 13 | 95 | 3.12e-14 | 66.6 |
| MS.gene40493.t1 | AT5G09370 | 39.474 | 76 | 42 | 2 | 8 | 81 | 24 | 97 | 4.97e-13 | 62.4 |
| MS.gene40493.t1 | AT5G09370 | 39.474 | 76 | 42 | 2 | 8 | 81 | 24 | 97 | 8.49e-13 | 62.4 |
| MS.gene40493.t1 | AT5G09370 | 39.474 | 76 | 42 | 2 | 8 | 81 | 24 | 97 | 8.91e-13 | 62.4 |
| MS.gene40493.t1 | AT3G43720 | 39.286 | 84 | 46 | 2 | 4 | 82 | 30 | 113 | 6.06e-12 | 60.8 |
| MS.gene40493.t1 | AT3G43720 | 39.286 | 84 | 46 | 2 | 4 | 82 | 30 | 113 | 7.67e-12 | 60.8 |
Find 50 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCGTTGGTTCTTATTT+TGG | 0.199878 | 5.3:+1920956 | MS.gene40493:CDS |
| GTTCCTGCTGGTGAGTCTGC+TGG | 0.326138 | 5.3:-1920733 | None:intergenic |
| GTACCTGATGGAACTGAGTT+TGG | 0.355549 | 5.3:-1920769 | None:intergenic |
| AATTCCTCAACCCCGTCTTC+AGG | 0.363035 | 5.3:+1920293 | MS.gene40493:CDS |
| TTCCTGCTGGTGAGTCTGCT+GGG | 0.376602 | 5.3:-1920732 | None:intergenic |
| TACTGATTCTTTAATCAGTT+GGG | 0.384390 | 5.3:+1921008 | MS.gene40493:CDS |
| CAAAAGAATAGCATTTCAAA+TGG | 0.424229 | 5.3:-1921034 | None:intergenic |
| GACTCTGCTTCTGTTCCTGC+TGG | 0.439322 | 5.3:-1920745 | None:intergenic |
| GCCTATGTCAGGTTCTCAGC+GGG | 0.446999 | 5.3:+1920360 | MS.gene40493:CDS |
| AGCCTTGCCTGGTGCTTGCA+AGG | 0.452642 | 5.3:+1920427 | MS.gene40493:CDS |
| TCCATCACCGGTTGAGGGAG+TGG | 0.468250 | 5.3:-1920904 | None:intergenic |
| TCAAAATCCACTCCCTCAAC+CGG | 0.469317 | 5.3:+1920897 | MS.gene40493:CDS |
| ATACTGATTCTTTAATCAGT+TGG | 0.471273 | 5.3:+1921007 | MS.gene40493:CDS |
| GGATGATCCATCACCGGTTG+AGG | 0.472460 | 5.3:-1920910 | None:intergenic |
| CAGCTTGATTGAATTTCCAC+TGG | 0.474292 | 5.3:-1920931 | None:intergenic |
| GTTTGCACCTTGCAAGCACC+AGG | 0.476162 | 5.3:-1920434 | None:intergenic |
| TTGAGCAGCATCCTGAAGAC+GGG | 0.489604 | 5.3:-1920304 | None:intergenic |
| TCCACTCCCTCAACCGGTGA+TGG | 0.490607 | 5.3:+1920903 | MS.gene40493:CDS |
| TATAGTTAAGACAAGGTGAT+AGG | 0.493717 | 5.3:-1920262 | None:intergenic |
| ACTCAGGCTCTAGCCTTGCC+TGG | 0.500358 | 5.3:+1920416 | MS.gene40493:CDS |
| CACCTTGCAAGCACCAGGCA+AGG | 0.514952 | 5.3:-1920429 | None:intergenic |
| ATCGAGTTGTACAAATGTCT+TGG | 0.528842 | 5.3:+1920235 | MS.gene40493:CDS |
| CCTTGTCTTAACTATATCAC+AGG | 0.529529 | 5.3:+1920269 | MS.gene40493:CDS |
| AATCAAGCTGTCAATTCCGT+TGG | 0.530988 | 5.3:+1920944 | MS.gene40493:CDS |
| AAAAGAATAGCATTTCAAAT+GGG | 0.533508 | 5.3:-1921033 | None:intergenic |
| TCTCCAAACTCAGTTCCATC+AGG | 0.538578 | 5.3:+1920766 | MS.gene40493:CDS |
| GCATCCTGAAGACGGGGTTG+AGG | 0.545184 | 5.3:-1920297 | None:intergenic |
| ACAACCACTATGCCTATGTC+AGG | 0.550990 | 5.3:+1920349 | MS.gene40493:CDS |
| TCCACTGGATGATCCATCAC+CGG | 0.557164 | 5.3:-1920916 | None:intergenic |
| TTTGAGCAGCATCCTGAAGA+CGG | 0.563609 | 5.3:-1920305 | None:intergenic |
| GATGATCCATCACCGGTTGA+GGG | 0.571557 | 5.3:-1920909 | None:intergenic |
| TCCCCAGCAGACTCACCAGC+AGG | 0.577866 | 5.3:+1920730 | MS.gene40493:CDS |
| CTGCTCAAACCTTGCCAGTG+TGG | 0.578926 | 5.3:+1920319 | MS.gene40493:CDS |
| TGTTCAGAGAACTGAGGCAT+AGG | 0.581130 | 5.3:-1920985 | None:intergenic |
| GTGAATTCACCACACTGGCA+AGG | 0.582240 | 5.3:-1920328 | None:intergenic |
| GTAATCGCAATGTTGTGCGC+TGG | 0.583284 | 5.3:+1920200 | None:intergenic |
| TCCTGCTGGTGAGTCTGCTG+GGG | 0.602035 | 5.3:-1920731 | None:intergenic |
| AGAACCTGACATAGGCATAG+TGG | 0.603929 | 5.3:-1920353 | None:intergenic |
| AATCAGCATCAATCAAACTC+AGG | 0.612879 | 5.3:+1920400 | MS.gene40493:CDS |
| CTATGTCAGGTTCTCAGCGG+GGG | 0.614715 | 5.3:+1920362 | MS.gene40493:CDS |
| TGCCTATGTCAGGTTCTCAG+CGG | 0.639245 | 5.3:+1920359 | MS.gene40493:CDS |
| GCTGCCAAAATAAGAACCAA+CGG | 0.650717 | 5.3:-1920960 | None:intergenic |
| CCCCGCTGAGAACCTGACAT+AGG | 0.652303 | 5.3:-1920361 | None:intergenic |
| ACCGGTGATGGATCATCCAG+TGG | 0.660594 | 5.3:+1920915 | MS.gene40493:CDS |
| CCTATGTCAGGTTCTCAGCG+GGG | 0.669708 | 5.3:+1920361 | MS.gene40493:CDS |
| CCTGTGATATAGTTAAGACA+AGG | 0.669942 | 5.3:-1920269 | None:intergenic |
| CTTGTCTTAACTATATCACA+GGG | 0.674749 | 5.3:+1920270 | MS.gene40493:CDS |
| TGGTTGTGAATTCACCACAC+TGG | 0.698930 | 5.3:-1920333 | None:intergenic |
| TGAGCAGCATCCTGAAGACG+GGG | 0.700847 | 5.3:-1920303 | None:intergenic |
| TCAGTATGTTCAGAGAACTG+AGG | 0.737979 | 5.3:-1920991 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATAGTTTAGAATAT+GGG | - | chr5.3:1920672-1920691 | None:intergenic | 10.0% |
| !!! | GAAATATATAGTTTAGAATA+TGG | - | chr5.3:1920673-1920692 | None:intergenic | 15.0% |
| !! | CAAATGAATTTCAACTTAAA+TGG | - | chr5.3:1920866-1920885 | None:intergenic | 20.0% |
| ! | AGTCAGTGTAAAACTAATAA+TGG | + | chr5.3:1920467-1920486 | MS.gene40493:intron | 25.0% |
| ! | ATCTCAATGTTCATATAGTT+AGG | - | chr5.3:1920561-1920580 | None:intergenic | 25.0% |
| ! | TCTCAATGTTCATATAGTTA+GGG | - | chr5.3:1920560-1920579 | None:intergenic | 25.0% |
| ! | TTCAACTTAAATGGTTAACA+AGG | - | chr5.3:1920857-1920876 | None:intergenic | 25.0% |
| !!! | ACTTATCTTTTTGAGTATCA+AGG | - | chr5.3:1920645-1920664 | None:intergenic | 25.0% |
| !!! | ATACTGATTCTTTAATCAGT+TGG | + | chr5.3:1921007-1921026 | MS.gene40493:CDS | 25.0% |
| !!! | ATTATTAGTTTTACACTGAC+TGG | - | chr5.3:1920468-1920487 | None:intergenic | 25.0% |
| !!! | TACTGATTCTTTAATCAGTT+GGG | + | chr5.3:1921008-1921027 | MS.gene40493:CDS | 25.0% |
| !!! | TTAAGTTGAAATTCATTTGC+AGG | + | chr5.3:1920867-1920886 | MS.gene40493:intron | 25.0% |
| AATGTTCATATAGTTAGGGT+TGG | - | chr5.3:1920556-1920575 | None:intergenic | 30.0% | |
| CTTGTCTTAACTATATCACA+GGG | + | chr5.3:1920270-1920289 | MS.gene40493:CDS | 30.0% | |
| TATAGTTAAGACAAGGTGAT+AGG | - | chr5.3:1920265-1920284 | None:intergenic | 30.0% | |
| !!! | AATTCCGTTGGTTCTTATTT+TGG | + | chr5.3:1920956-1920975 | MS.gene40493:CDS | 30.0% |
| AATCAGCATCAATCAAACTC+AGG | + | chr5.3:1920400-1920419 | MS.gene40493:CDS | 35.0% | |
| CATCAGGTACTAACATATTG+GGG | + | chr5.3:1920782-1920801 | MS.gene40493:intron | 35.0% | |
| CCATCAGGTACTAACATATT+GGG | + | chr5.3:1920781-1920800 | MS.gene40493:intron | 35.0% | |
| CCTGTGATATAGTTAAGACA+AGG | - | chr5.3:1920272-1920291 | None:intergenic | 35.0% | |
| CCTTGTCTTAACTATATCAC+AGG | + | chr5.3:1920269-1920288 | MS.gene40493:CDS | 35.0% | |
| TCCATCAGGTACTAACATAT+TGG | + | chr5.3:1920780-1920799 | MS.gene40493:intron | 35.0% | |
| TGAAATTCATTTGCAGGAAC+CGG | + | chr5.3:1920873-1920892 | MS.gene40493:intron | 35.0% | |
| TGATCATCCAATTTGAACCT+TGG | + | chr5.3:1920831-1920850 | MS.gene40493:intron | 35.0% | |
| TTAAATGGTTAACAAGGCCA+AGG | - | chr5.3:1920851-1920870 | None:intergenic | 35.0% | |
| ! | ATCGAGTTGTACAAATGTCT+TGG | + | chr5.3:1920235-1920254 | MS.gene40493:CDS | 35.0% |
| !!! | ATTAGTTTTACACTGACTGG+TGG | - | chr5.3:1920465-1920484 | None:intergenic | 35.0% |
| !!! | TTAGTTTTACACTGACTGGT+GGG | - | chr5.3:1920464-1920483 | None:intergenic | 35.0% |
| AACAAGGCCAAGGTTCAAAT+TGG | - | chr5.3:1920841-1920860 | None:intergenic | 40.0% | |
| AATCAAGCTGTCAATTCCGT+TGG | + | chr5.3:1920944-1920963 | MS.gene40493:CDS | 40.0% | |
| CAGCTTGATTGAATTTCCAC+TGG | - | chr5.3:1920934-1920953 | None:intergenic | 40.0% | |
| CCCAATATGTTAGTACCTGA+TGG | - | chr5.3:1920784-1920803 | None:intergenic | 40.0% | |
| GCTGCCAAAATAAGAACCAA+CGG | - | chr5.3:1920963-1920982 | None:intergenic | 40.0% | |
| TCAGTATGTTCAGAGAACTG+AGG | - | chr5.3:1920994-1921013 | None:intergenic | 40.0% | |
| ACAACCACTATGCCTATGTC+AGG | + | chr5.3:1920349-1920368 | MS.gene40493:CDS | 45.0% | |
| AGAACCTGACATAGGCATAG+TGG | - | chr5.3:1920356-1920375 | None:intergenic | 45.0% | |
| GTACCTGATGGAACTGAGTT+TGG | - | chr5.3:1920772-1920791 | None:intergenic | 45.0% | |
| TCAAAATCCACTCCCTCAAC+CGG | + | chr5.3:1920897-1920916 | MS.gene40493:CDS | 45.0% | |
| TCTCCAAACTCAGTTCCATC+AGG | + | chr5.3:1920766-1920785 | MS.gene40493:CDS | 45.0% | |
| TGGTTGTGAATTCACCACAC+TGG | - | chr5.3:1920336-1920355 | None:intergenic | 45.0% | |
| TGTTCAGAGAACTGAGGCAT+AGG | - | chr5.3:1920988-1921007 | None:intergenic | 45.0% | |
| TTTGAGCAGCATCCTGAAGA+CGG | - | chr5.3:1920308-1920327 | None:intergenic | 45.0% | |
| !! | TGAGGGAGTGGATTTTGATC+CGG | - | chr5.3:1920895-1920914 | None:intergenic | 45.0% |
| !! | TTTTACACTGACTGGTGGGT+GGG | - | chr5.3:1920460-1920479 | None:intergenic | 45.0% |
| AATTCCTCAACCCCGTCTTC+AGG | + | chr5.3:1920293-1920312 | MS.gene40493:CDS | 50.0% | |
| GTGAATTCACCACACTGGCA+AGG | - | chr5.3:1920331-1920350 | None:intergenic | 50.0% | |
| TCCACTGGATGATCCATCAC+CGG | - | chr5.3:1920919-1920938 | None:intergenic | 50.0% | |
| TGCCTATGTCAGGTTCTCAG+CGG | + | chr5.3:1920359-1920378 | MS.gene40493:CDS | 50.0% | |
| TTGAGCAGCATCCTGAAGAC+GGG | - | chr5.3:1920307-1920326 | None:intergenic | 50.0% | |
| ! | GATGATCCATCACCGGTTGA+GGG | - | chr5.3:1920912-1920931 | None:intergenic | 50.0% |
| ! | TTTACACTGACTGGTGGGTG+GGG | - | chr5.3:1920459-1920478 | None:intergenic | 50.0% |
| !! | GTTTTACACTGACTGGTGGG+TGG | - | chr5.3:1920461-1920480 | None:intergenic | 50.0% |
| CCTATGTCAGGTTCTCAGCG+GGG | + | chr5.3:1920361-1920380 | MS.gene40493:CDS | 55.0% | |
| CTATGTCAGGTTCTCAGCGG+GGG | + | chr5.3:1920362-1920381 | MS.gene40493:CDS | 55.0% | |
| CTGCTCAAACCTTGCCAGTG+TGG | + | chr5.3:1920319-1920338 | MS.gene40493:CDS | 55.0% | |
| GACTCTGCTTCTGTTCCTGC+TGG | - | chr5.3:1920748-1920767 | None:intergenic | 55.0% | |
| GCCTATGTCAGGTTCTCAGC+GGG | + | chr5.3:1920360-1920379 | MS.gene40493:CDS | 55.0% | |
| GTTTGCACCTTGCAAGCACC+AGG | - | chr5.3:1920437-1920456 | None:intergenic | 55.0% | |
| TGAGCAGCATCCTGAAGACG+GGG | - | chr5.3:1920306-1920325 | None:intergenic | 55.0% | |
| TTCCTGCTGGTGAGTCTGCT+GGG | - | chr5.3:1920735-1920754 | None:intergenic | 55.0% | |
| ! | GGATGATCCATCACCGGTTG+AGG | - | chr5.3:1920913-1920932 | None:intergenic | 55.0% |
| !! | ACCGGTGATGGATCATCCAG+TGG | + | chr5.3:1920915-1920934 | MS.gene40493:CDS | 55.0% |
| AGCCTTGCCTGGTGCTTGCA+AGG | + | chr5.3:1920427-1920446 | MS.gene40493:CDS | 60.0% | |
| CACCTTGCAAGCACCAGGCA+AGG | - | chr5.3:1920432-1920451 | None:intergenic | 60.0% | |
| CCCCGCTGAGAACCTGACAT+AGG | - | chr5.3:1920364-1920383 | None:intergenic | 60.0% | |
| GCATCCTGAAGACGGGGTTG+AGG | - | chr5.3:1920300-1920319 | None:intergenic | 60.0% | |
| GTTCCTGCTGGTGAGTCTGC+TGG | - | chr5.3:1920736-1920755 | None:intergenic | 60.0% | |
| TCCACTCCCTCAACCGGTGA+TGG | + | chr5.3:1920903-1920922 | MS.gene40493:CDS | 60.0% | |
| TCCTGCTGGTGAGTCTGCTG+GGG | - | chr5.3:1920734-1920753 | None:intergenic | 60.0% | |
| ! | TCCATCACCGGTTGAGGGAG+TGG | - | chr5.3:1920907-1920926 | None:intergenic | 60.0% |
| !! | ACTCAGGCTCTAGCCTTGCC+TGG | + | chr5.3:1920416-1920435 | MS.gene40493:CDS | 60.0% |
| TCCCCAGCAGACTCACCAGC+AGG | + | chr5.3:1920730-1920749 | MS.gene40493:CDS | 65.0% | |
| ! | AGCGGGGGTGCATCGTCGCT+GGG | + | chr5.3:1920377-1920396 | MS.gene40493:CDS | 70.0% |
| ! | CAGCGGGGGTGCATCGTCGC+TGG | + | chr5.3:1920376-1920395 | MS.gene40493:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1920209 | 1921041 | 1920209 | ID=MS.gene40493 |
| chr5.3 | mRNA | 1920209 | 1921041 | 1920209 | ID=MS.gene40493.t1;Parent=MS.gene40493 |
| chr5.3 | exon | 1920209 | 1920448 | 1920209 | ID=MS.gene40493.t1.exon1;Parent=MS.gene40493.t1 |
| chr5.3 | CDS | 1920209 | 1920448 | 1920209 | ID=cds.MS.gene40493.t1;Parent=MS.gene40493.t1 |
| chr5.3 | exon | 1920725 | 1920787 | 1920725 | ID=MS.gene40493.t1.exon2;Parent=MS.gene40493.t1 |
| chr5.3 | CDS | 1920725 | 1920787 | 1920725 | ID=cds.MS.gene40493.t1;Parent=MS.gene40493.t1 |
| chr5.3 | exon | 1920889 | 1921041 | 1920889 | ID=MS.gene40493.t1.exon3;Parent=MS.gene40493.t1 |
| chr5.3 | CDS | 1920889 | 1921041 | 1920889 | ID=cds.MS.gene40493.t1;Parent=MS.gene40493.t1 |
| Gene Sequence |
| Protein sequence |
