Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40950.t1 | XP_024633665.1 | 70.1 | 371 | 93 | 9 | 1 | 364 | 1 | 360 | 3.80E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40950.t1 | A0A396IZA5 | 70.1 | 371 | 93 | 9 | 1 | 364 | 1 | 360 | 2.8e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene40950 | 0.829935 | 3.90E-55 | -1.69E-46 |
| MS.gene050139 | MS.gene40950 | 0.813187 | 2.91E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene40950 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene40950 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene40950 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene40950 | 0.813974 | 1.95E-51 | -1.69E-46 |
| MS.gene050586 | MS.gene40950 | 0.807481 | 4.95E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene40950 | 0.809674 | 1.68E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene40950 | 0.809118 | 2.22E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene40950 | 0.831715 | 1.43E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene40950 | 0.816968 | 4.21E-52 | -1.69E-46 |
| MS.gene050959 | MS.gene40950 | 0.80254 | 5.35E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene40950 | 0.802601 | 5.19E-49 | -1.69E-46 |
| MS.gene051626 | MS.gene40950 | 0.826707 | 2.34E-54 | -1.69E-46 |
| MS.gene051789 | MS.gene40950 | 0.847176 | 1.36E-59 | -1.69E-46 |
| MS.gene052020 | MS.gene40950 | 0.801781 | 7.66E-49 | -1.69E-46 |
| MS.gene052142 | MS.gene40950 | 0.807742 | 4.36E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene40950 | 0.82318 | 1.59E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene40950 | 0.814974 | 1.17E-51 | -1.69E-46 |
| MS.gene052698 | MS.gene40950 | 0.834477 | 2.93E-56 | -1.69E-46 |
| MS.gene052967 | MS.gene40950 | 0.804409 | 2.19E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene40950 | 0.830549 | 2.76E-55 | -1.69E-46 |
| MS.gene053204 | MS.gene40950 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene40950 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene40950 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene40950 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene40950 | 0.837945 | 3.85E-57 | -1.69E-46 |
| MS.gene054596 | MS.gene40950 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene40950 | 0.806076 | 9.81E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene40950 | 0.833899 | 4.09E-56 | -1.69E-46 |
| MS.gene058168 | MS.gene40950 | 0.84782 | 9.08E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene40950 | 0.802901 | 4.50E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene40950 | 0.865046 | 7.84E-65 | -1.69E-46 |
| MS.gene059124 | MS.gene40950 | 0.809561 | 1.78E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene40950 | 0.80227 | 6.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40950.t1 | MTR_3g097180 | 80.000 | 355 | 53 | 9 | 1 | 348 | 1 | 344 | 1.15e-179 | 503 |
| MS.gene40950.t1 | MTR_1g026790 | 37.607 | 117 | 71 | 2 | 253 | 368 | 431 | 546 | 2.51e-16 | 80.9 |
| MS.gene40950.t1 | MTR_2g010820 | 39.450 | 109 | 64 | 2 | 261 | 368 | 427 | 534 | 2.70e-16 | 80.5 |
| MS.gene40950.t1 | MTR_1g026800 | 32.110 | 109 | 73 | 1 | 261 | 368 | 369 | 477 | 3.99e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40950.t1 | AT4G01170 | 41.121 | 107 | 60 | 2 | 256 | 359 | 330 | 436 | 2.22e-17 | 83.6 |
| MS.gene40950.t1 | AT3G07730 | 40.404 | 99 | 57 | 2 | 263 | 359 | 299 | 397 | 4.35e-14 | 73.6 |
| MS.gene40950.t1 | AT3G07730 | 40.404 | 99 | 57 | 2 | 263 | 359 | 367 | 465 | 4.85e-14 | 73.6 |
| MS.gene40950.t1 | AT1G77270 | 37.624 | 101 | 61 | 1 | 261 | 359 | 571 | 671 | 2.11e-13 | 72.0 |
| MS.gene40950.t1 | AT1G77270 | 37.624 | 101 | 61 | 1 | 261 | 359 | 571 | 671 | 2.11e-13 | 72.0 |
Find 71 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCCATGTTCTCTTTCT+AGG | 0.150314 | 3.2:-81052019 | None:intergenic |
| ATCATCATGTTCAAAGAAAA+AGG | 0.196121 | 3.2:+81052378 | MS.gene40950:CDS |
| TCCATCATGATCTCCCTTAT+AGG | 0.226228 | 3.2:-81053422 | None:intergenic |
| ATCAAGTCTGAGTCGGCTTT+TGG | 0.239955 | 3.2:-81052142 | None:intergenic |
| CGCAGGAGACGCAAAACTTT+GGG | 0.279175 | 3.2:-81053769 | None:intergenic |
| TGGGAGTAGCAAAGCCTATA+AGG | 0.298108 | 3.2:+81053408 | MS.gene40950:CDS |
| GATGATGTGTATGTGAAATT+TGG | 0.315151 | 3.2:+81052349 | MS.gene40950:CDS |
| TGTCGATGAAAGTGTGAAAA+AGG | 0.317887 | 3.2:+81052666 | MS.gene40950:CDS |
| TTTCCTTCTTAACAAGATTA+GGG | 0.321806 | 3.2:+81052060 | MS.gene40950:CDS |
| ATTTCCTTCTTAACAAGATT+AGG | 0.338195 | 3.2:+81052059 | MS.gene40950:CDS |
| ATCTCACCTGCTTCATCTTC+AGG | 0.342233 | 3.2:+81052198 | MS.gene40950:CDS |
| CTAAACTCCGTCACTTTCCT+TGG | 0.360637 | 3.2:-81053277 | None:intergenic |
| GACTTAGTCGTGTGACTTCA+AGG | 0.364514 | 3.2:+81052437 | MS.gene40950:CDS |
| ATGGAGGGATCCATCGTGTT+TGG | 0.375665 | 3.2:+81054778 | MS.gene40950:CDS |
| CACGTAGAAATGCTCTTAAA+AGG | 0.376728 | 3.2:+81052557 | MS.gene40950:CDS |
| AACTCATGAAAGAAATTAAC+AGG | 0.379578 | 3.2:+81053305 | MS.gene40950:CDS |
| GATCCCATGTTCTCTTTCTA+GGG | 0.386905 | 3.2:-81052018 | None:intergenic |
| GCGCAGGAGACGCAAAACTT+TGG | 0.405534 | 3.2:-81053770 | None:intergenic |
| AGTACGAGGAGGAACAAAAT+AGG | 0.408884 | 3.2:+81052269 | MS.gene40950:CDS |
| CAGGTGAGATTGTATAATAT+TGG | 0.416449 | 3.2:-81052185 | None:intergenic |
| GGTCCCTAATCTTGTTAAGA+AGG | 0.432942 | 3.2:-81052063 | None:intergenic |
| TAATATAAAATTTGTGAAGA+AGG | 0.438820 | 3.2:-81052114 | None:intergenic |
| TCATGTTGTAGATCTTCTAA+AGG | 0.481902 | 3.2:+81053720 | MS.gene40950:intron |
| AGAATGATGTGAACGTGAAT+GGG | 0.483464 | 3.2:+81052611 | MS.gene40950:CDS |
| GACTTCAAGGAAGGGTGGTA+GGG | 0.486903 | 3.2:+81052450 | MS.gene40950:CDS |
| TGACTTCAAGGAAGGGTGGT+AGG | 0.494947 | 3.2:+81052449 | MS.gene40950:CDS |
| ATCATCCTTTCTTATTGTTG+TGG | 0.497020 | 3.2:-81054809 | None:intergenic |
| AGAAATTAATGCTCGAACGC+CGG | 0.497133 | 3.2:+81053363 | MS.gene40950:CDS |
| TTATGCTCTTCCTCGCAGTA+AGG | 0.497149 | 3.2:-81053328 | None:intergenic |
| CTCTTTCTAGGGTTCACTGA+AGG | 0.497285 | 3.2:-81052007 | None:intergenic |
| AAGAATGATGTGAACGTGAA+TGG | 0.498557 | 3.2:+81052610 | MS.gene40950:CDS |
| TTGAATCATTTGAAGCGTGA+TGG | 0.498621 | 3.2:+81052298 | MS.gene40950:CDS |
| TAGGGACCCTAATACTCAAA+AGG | 0.500813 | 3.2:+81052078 | MS.gene40950:CDS |
| GGGAGTAGCAAAGCCTATAA+GGG | 0.517239 | 3.2:+81053409 | MS.gene40950:CDS |
| CAAGGAAGGGTGGTAGGGGT+AGG | 0.528491 | 3.2:+81052455 | MS.gene40950:CDS |
| GTGAACGTGAATGGGGAAGA+AGG | 0.529870 | 3.2:+81052619 | MS.gene40950:CDS |
| GATAATTAATGTGGAAAGCT+CGG | 0.530201 | 3.2:+81052729 | MS.gene40950:CDS |
| AATGCTCTTAAAAGGAAAAG+AGG | 0.535455 | 3.2:+81052565 | MS.gene40950:CDS |
| ACTTCAAGGAAGGGTGGTAG+GGG | 0.536732 | 3.2:+81052451 | MS.gene40950:CDS |
| GCCTATAAGGGAGATCATGA+TGG | 0.545167 | 3.2:+81053421 | MS.gene40950:CDS |
| AAGGAGATTCAAGATGATGA+TGG | 0.551660 | 3.2:+81052685 | MS.gene40950:CDS |
| TGAGATTGTATAATATTGGA+TGG | 0.558685 | 3.2:-81052181 | None:intergenic |
| TTTGTTCCTGAAGATGAAGC+AGG | 0.564716 | 3.2:-81052204 | None:intergenic |
| TTTCTAGGGTTCACTGAAGG+AGG | 0.576221 | 3.2:-81052004 | None:intergenic |
| AAGACGGAGCGTTCATGCCA+TGG | 0.578007 | 3.2:+81054759 | MS.gene40950:CDS |
| GAACTTTATCAAGTCTGAGT+CGG | 0.581290 | 3.2:-81052149 | None:intergenic |
| TAGTCGTGTGACTTCAAGGA+AGG | 0.585097 | 3.2:+81052441 | MS.gene40950:CDS |
| TATCTGCTGCTAAGAAACGT+TGG | 0.589299 | 3.2:+81052500 | MS.gene40950:CDS |
| TGAACCCTAGAAAGAGAACA+TGG | 0.591246 | 3.2:+81052014 | MS.gene40950:CDS |
| CGGAGCGTTCATGCCATGGA+GGG | 0.608980 | 3.2:+81054763 | MS.gene40950:CDS |
| TGTGATTGAGATAATTAATG+TGG | 0.612519 | 3.2:+81052720 | MS.gene40950:CDS |
| AGGATAATGAAGTCAATCCA+AGG | 0.614148 | 3.2:+81053260 | MS.gene40950:intron |
| ATTCAAGATGATGATGGTGA+TGG | 0.615253 | 3.2:+81052691 | MS.gene40950:CDS |
| GACTTGATAAAGTTCACAGA+TGG | 0.623810 | 3.2:+81052157 | MS.gene40950:CDS |
| AATCAGTATTCAACGCAAGA+CGG | 0.628758 | 3.2:+81054743 | MS.gene40950:intron |
| TTATGTACTTGAGATTGTTG+AGG | 0.636491 | 3.2:+81052327 | MS.gene40950:CDS |
| AAACACGATGGATCCCTCCA+TGG | 0.643689 | 3.2:-81054776 | None:intergenic |
| ACGGAGCGTTCATGCCATGG+AGG | 0.643935 | 3.2:+81054762 | MS.gene40950:CDS |
| GCAGGAGACGCAAAACTTTG+GGG | 0.646503 | 3.2:-81053768 | None:intergenic |
| GAATGATGTGAACGTGAATG+GGG | 0.654990 | 3.2:+81052612 | MS.gene40950:CDS |
| AGTCAATCCAAGGAAAGTGA+CGG | 0.655708 | 3.2:+81053270 | MS.gene40950:CDS |
| CGTGTGACTTCAAGGAAGGG+TGG | 0.659520 | 3.2:+81052445 | MS.gene40950:CDS |
| AGAAAATCTCACAGAGTACG+AGG | 0.663116 | 3.2:+81052255 | MS.gene40950:CDS |
| AGTCGTGTGACTTCAAGGAA+GGG | 0.667589 | 3.2:+81052442 | MS.gene40950:CDS |
| GGTAGGGGTAGGAAAATGAA+AGG | 0.668306 | 3.2:+81052466 | MS.gene40950:CDS |
| AATTAACAGGCCTTACTGCG+AGG | 0.686864 | 3.2:+81053318 | MS.gene40950:CDS |
| GGTAGTTCGTCCAAACACGA+TGG | 0.687379 | 3.2:-81054788 | None:intergenic |
| GAACCCTAGAAAGAGAACAT+GGG | 0.714054 | 3.2:+81052015 | MS.gene40950:CDS |
| TAATAATAAGAAAAGTGACG+TGG | 0.721249 | 3.2:+81052525 | MS.gene40950:CDS |
| GGTGTTAAGAACTCTAAACG+TGG | 0.725632 | 3.2:+81052409 | MS.gene40950:CDS |
| AAATCTCACAGAGTACGAGG+AGG | 0.742264 | 3.2:+81052258 | MS.gene40950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGCAAAAATATTGTT+TGG | + | chr3.2:81054311-81054330 | MS.gene40950:intron | 15.0% |
| !! | AAAATTGTTACAAATAAACA+AGG | - | chr3.2:81054523-81054542 | None:intergenic | 15.0% |
| !! | AAATTGTTACAAATAAACAA+GGG | - | chr3.2:81054522-81054541 | None:intergenic | 15.0% |
| !! | AATATGTAGAAATTAAAGAT+AGG | - | chr3.2:81054420-81054439 | None:intergenic | 15.0% |
| !! | ATATGTAGAAATTAAAGATA+GGG | - | chr3.2:81054419-81054438 | None:intergenic | 15.0% |
| !! | ATATGTTTAATGTATACATA+TGG | + | chr3.2:81053533-81053552 | MS.gene40950:intron | 15.0% |
| !! | TAAAAGAAAAGATAAAATGT+TGG | - | chr3.2:81052799-81052818 | None:intergenic | 15.0% |
| !! | TAATATAAAATTTGTGAAGA+AGG | - | chr3.2:81052117-81052136 | None:intergenic | 15.0% |
| !! | TATACTTCAAATTATAATTC+CGG | - | chr3.2:81054268-81054287 | None:intergenic | 15.0% |
| !!! | TTTAATTTCTACATATTCAT+CGG | + | chr3.2:81054423-81054442 | MS.gene40950:intron | 15.0% |
| !! | TATGAGAATTGAAAATCTAT+TGG | + | chr3.2:81054233-81054252 | MS.gene40950:intron | 20.0% |
| !! | TATGTAGAAATTAAAGATAG+GGG | - | chr3.2:81054418-81054437 | None:intergenic | 20.0% |
| !!! | ACTTCAATCTCAATATTTTA+GGG | - | chr3.2:81053126-81053145 | None:intergenic | 20.0% |
| !!! | TATTAGTTTAGAATTAGACT+TGG | + | chr3.2:81054658-81054677 | MS.gene40950:intron | 20.0% |
| !!! | TTACATATAGACCTTTTTAT+TGG | + | chr3.2:81054378-81054397 | MS.gene40950:intron | 20.0% |
| !!! | TTCTTTTCTGGATTTTTTTT+TGG | - | chr3.2:81052595-81052614 | None:intergenic | 20.0% |
| ! | AAAATATTGAGATTGAAGTC+TGG | + | chr3.2:81053127-81053146 | MS.gene40950:intron | 25.0% |
| ! | AAATAATTACCACATATACG+TGG | - | chr3.2:81054096-81054115 | None:intergenic | 25.0% |
| ! | AACTCATGAAAGAAATTAAC+AGG | + | chr3.2:81053305-81053324 | MS.gene40950:CDS | 25.0% |
| ! | AATAATTACCACATATACGT+GGG | - | chr3.2:81054095-81054114 | None:intergenic | 25.0% |
| ! | ACGTATATGTGGTAATTATT+TGG | + | chr3.2:81054095-81054114 | MS.gene40950:intron | 25.0% |
| ! | ATCATCATGTTCAAAGAAAA+AGG | + | chr3.2:81052378-81052397 | MS.gene40950:CDS | 25.0% |
| ! | ATTAAACAACTGATCAAGAA+TGG | + | chr3.2:81054180-81054199 | MS.gene40950:intron | 25.0% |
| ! | ATTTCCTTCTTAACAAGATT+AGG | + | chr3.2:81052059-81052078 | MS.gene40950:CDS | 25.0% |
| ! | GTATGCTATTACTAATTAAG+AGG | - | chr3.2:81053492-81053511 | None:intergenic | 25.0% |
| ! | GTTAGAAGTTAAAAACTTTC+AGG | - | chr3.2:81053938-81053957 | None:intergenic | 25.0% |
| ! | GTTCTTGTAATTTATATCGT+AGG | + | chr3.2:81054600-81054619 | MS.gene40950:intron | 25.0% |
| ! | TAATAATAAGAAAAGTGACG+TGG | + | chr3.2:81052525-81052544 | MS.gene40950:CDS | 25.0% |
| ! | TCAAATTATAATTCCGGAAT+TGG | - | chr3.2:81054262-81054281 | None:intergenic | 25.0% |
| ! | TCATCATGTTCAAAGAAAAA+GGG | + | chr3.2:81052379-81052398 | MS.gene40950:CDS | 25.0% |
| ! | TCTAAATTGAGTTCTACAAT+TGG | + | chr3.2:81054203-81054222 | MS.gene40950:intron | 25.0% |
| ! | TGAGATTGTATAATATTGGA+TGG | - | chr3.2:81052184-81052203 | None:intergenic | 25.0% |
| ! | TGATAAGATAACACAACATA+TGG | - | chr3.2:81054724-81054743 | None:intergenic | 25.0% |
| ! | TGTGATTGAGATAATTAATG+TGG | + | chr3.2:81052720-81052739 | MS.gene40950:CDS | 25.0% |
| ! | TTTCCTTCTTAACAAGATTA+GGG | + | chr3.2:81052060-81052079 | MS.gene40950:CDS | 25.0% |
| !! | AAACTTTCAGGTGAATATAT+AGG | - | chr3.2:81053926-81053945 | None:intergenic | 25.0% |
| !! | GACTTCAATCTCAATATTTT+AGG | - | chr3.2:81053127-81053146 | None:intergenic | 25.0% |
| !! | TACTGTTTTCACTTTGAATT+TGG | + | chr3.2:81053599-81053618 | MS.gene40950:intron | 25.0% |
| !! | TAGAATTAGACTTGGTAATT+TGG | + | chr3.2:81054666-81054685 | MS.gene40950:intron | 25.0% |
| !! | TTTTACTGGATGTGTATATT+GGG | + | chr3.2:81054481-81054500 | MS.gene40950:intron | 25.0% |
| !! | TTTTTACTGGATGTGTATAT+TGG | + | chr3.2:81054480-81054499 | MS.gene40950:intron | 25.0% |
| !!! | AATTTGCCTTTGTACTTTTT+TGG | + | chr3.2:81052981-81053000 | MS.gene40950:intron | 25.0% |
| !!! | TAAGGATGAACTTTTTTGAT+AGG | + | chr3.2:81053240-81053259 | MS.gene40950:intron | 25.0% |
| !!! | TTTTTGAAAAATATGCGTGA+AGG | - | chr3.2:81053865-81053884 | None:intergenic | 25.0% |
| AAATTGAGTTCTACAATTGG+TGG | + | chr3.2:81054206-81054225 | MS.gene40950:intron | 30.0% | |
| AACACAACATATGGATCAAA+AGG | - | chr3.2:81054715-81054734 | None:intergenic | 30.0% | |
| AATGCTCTTAAAAGGAAAAG+AGG | + | chr3.2:81052565-81052584 | MS.gene40950:CDS | 30.0% | |
| AGTCGAAGTTTGATAAAAGT+TGG | - | chr3.2:81053158-81053177 | None:intergenic | 30.0% | |
| CAGGTGAGATTGTATAATAT+TGG | - | chr3.2:81052188-81052207 | None:intergenic | 30.0% | |
| CTAGATCTTCGCTAATTTAT+TGG | + | chr3.2:81054544-81054563 | MS.gene40950:intron | 30.0% | |
| GATAATTAATGTGGAAAGCT+CGG | + | chr3.2:81052729-81052748 | MS.gene40950:CDS | 30.0% | |
| GATGATGTGTATGTGAAATT+TGG | + | chr3.2:81052349-81052368 | MS.gene40950:CDS | 30.0% | |
| GCTATTACTAATTAAGAGGA+TGG | - | chr3.2:81053488-81053507 | None:intergenic | 30.0% | |
| TCATGTTGTAGATCTTCTAA+AGG | + | chr3.2:81053720-81053739 | MS.gene40950:intron | 30.0% | |
| TTATGTACTTGAGATTGTTG+AGG | + | chr3.2:81052327-81052346 | MS.gene40950:CDS | 30.0% | |
| TTTACTGGATGTGTATATTG+GGG | + | chr3.2:81054482-81054501 | MS.gene40950:intron | 30.0% | |
| ! | ATGCAACAATTTTCCCAATT+GGG | + | chr3.2:81053649-81053668 | MS.gene40950:intron | 30.0% |
| ! | CAAGATTTGCTCCAATAAAA+AGG | - | chr3.2:81054392-81054411 | None:intergenic | 30.0% |
| ! | TCCAAACCAAAAAAGTACAA+AGG | - | chr3.2:81052990-81053009 | None:intergenic | 30.0% |
| ! | TCTTTTCTTGATCATCATCT+TGG | + | chr3.2:81053448-81053467 | MS.gene40950:CDS | 30.0% |
| !! | AGCTTTTCCTTTTGAGTATT+AGG | - | chr3.2:81052088-81052107 | None:intergenic | 30.0% |
| !! | CACAAAGTTCATGTTTTTAC+TGG | + | chr3.2:81054467-81054486 | MS.gene40950:intron | 30.0% |
| !! | GCTTTTCCTTTTGAGTATTA+GGG | - | chr3.2:81052087-81052106 | None:intergenic | 30.0% |
| AAAAATACAGAGATCTGCGT+GGG | + | chr3.2:81053389-81053408 | MS.gene40950:CDS | 35.0% | |
| AAAACTCTCTTGTAACTGTC+TGG | + | chr3.2:81054156-81054175 | MS.gene40950:intron | 35.0% | |
| AAGAATGATGTGAACGTGAA+TGG | + | chr3.2:81052610-81052629 | MS.gene40950:CDS | 35.0% | |
| AAGGAGATTCAAGATGATGA+TGG | + | chr3.2:81052685-81052704 | MS.gene40950:CDS | 35.0% | |
| AATCAGTATTCAACGCAAGA+CGG | + | chr3.2:81054743-81054762 | MS.gene40950:intron | 35.0% | |
| AATCCAAATTGGTACTTTGC+TGG | + | chr3.2:81053184-81053203 | MS.gene40950:intron | 35.0% | |
| AATCTATTGGAGTCCAATTC+CGG | + | chr3.2:81054246-81054265 | MS.gene40950:intron | 35.0% | |
| ACAACATATGGATCAAAAGG+AGG | - | chr3.2:81054712-81054731 | None:intergenic | 35.0% | |
| ACATCTCAAGATGTTTGTGT+TGG | + | chr3.2:81053958-81053977 | MS.gene40950:intron | 35.0% | |
| AGAATGATGTGAACGTGAAT+GGG | + | chr3.2:81052611-81052630 | MS.gene40950:CDS | 35.0% | |
| AGGATAATGAAGTCAATCCA+AGG | + | chr3.2:81053260-81053279 | MS.gene40950:intron | 35.0% | |
| ATCTTCAAAAACTTGCGTCA+TGG | + | chr3.2:81054635-81054654 | MS.gene40950:intron | 35.0% | |
| CAACATATGGATCAAAAGGA+GGG | - | chr3.2:81054711-81054730 | None:intergenic | 35.0% | |
| CACGTAGAAATGCTCTTAAA+AGG | + | chr3.2:81052557-81052576 | MS.gene40950:CDS | 35.0% | |
| CATCTCAAGATGTTTGTGTT+GGG | + | chr3.2:81053959-81053978 | MS.gene40950:intron | 35.0% | |
| GAACTTTATCAAGTCTGAGT+CGG | - | chr3.2:81052152-81052171 | None:intergenic | 35.0% | |
| GACTTGATAAAGTTCACAGA+TGG | + | chr3.2:81052157-81052176 | MS.gene40950:CDS | 35.0% | |
| GTAGAAATTAAAGATAGGGG+TGG | - | chr3.2:81054415-81054434 | None:intergenic | 35.0% | |
| TCAAAGAAAAAGGGTAAGCT+TGG | + | chr3.2:81052388-81052407 | MS.gene40950:CDS | 35.0% | |
| TCATCCTTAAGCAACACAAA+TGG | - | chr3.2:81053229-81053248 | None:intergenic | 35.0% | |
| TCATCTTGGTAAGTAGGATT+TGG | + | chr3.2:81053462-81053481 | MS.gene40950:intron | 35.0% | |
| TGATCATCATCTTGGTAAGT+AGG | + | chr3.2:81053456-81053475 | MS.gene40950:intron | 35.0% | |
| ! | AACAATTTTCCCAATTGGGT+TGG | + | chr3.2:81053653-81053672 | MS.gene40950:intron | 35.0% |
| ! | ACGTTCACATCATTCTTTTC+TGG | - | chr3.2:81052607-81052626 | None:intergenic | 35.0% |
| ! | AGACTTGGTAATTTGGTTAG+TGG | + | chr3.2:81054673-81054692 | MS.gene40950:intron | 35.0% |
| ! | GATGCAACAATTTTCCCAAT+TGG | + | chr3.2:81053648-81053667 | MS.gene40950:intron | 35.0% |
| ! | TGTCGATGAAAGTGTGAAAA+AGG | + | chr3.2:81052666-81052685 | MS.gene40950:CDS | 35.0% |
| ! | TTGAATCATTTGAAGCGTGA+TGG | + | chr3.2:81052298-81052317 | MS.gene40950:CDS | 35.0% |
| !! | ATTCAAGATGATGATGGTGA+TGG | + | chr3.2:81052691-81052710 | MS.gene40950:CDS | 35.0% |
| !! | TGCTAGAATTGAGAGTATCT+AGG | + | chr3.2:81054053-81054072 | MS.gene40950:intron | 35.0% |
| !!! | AGATCTCTGTATTTTTGGAC+CGG | - | chr3.2:81053385-81053404 | None:intergenic | 35.0% |
| !!! | CTGGTCGATTTTGTTTTTGT+TGG | + | chr3.2:81053203-81053222 | MS.gene40950:intron | 35.0% |
| !!! | GCCTTTGTACTTTTTTGGTT+TGG | + | chr3.2:81052986-81053005 | MS.gene40950:intron | 35.0% |
| AGAAAATCTCACAGAGTACG+AGG | + | chr3.2:81052255-81052274 | MS.gene40950:CDS | 40.0% | |
| AGAAATTAATGCTCGAACGC+CGG | + | chr3.2:81053363-81053382 | MS.gene40950:CDS | 40.0% | |
| AGTACGAGGAGGAACAAAAT+AGG | + | chr3.2:81052269-81052288 | MS.gene40950:CDS | 40.0% | |
| AGTCAATCCAAGGAAAGTGA+CGG | + | chr3.2:81053270-81053289 | MS.gene40950:CDS | 40.0% | |
| CAAAAATACAGAGATCTGCG+TGG | + | chr3.2:81053388-81053407 | MS.gene40950:CDS | 40.0% | |
| CATTCACACAATCAGTGCAT+CGG | - | chr3.2:81052945-81052964 | None:intergenic | 40.0% | |
| CTTTGTGACACTTCTGATTC+TGG | - | chr3.2:81054454-81054473 | None:intergenic | 40.0% | |
| GAACCCTAGAAAGAGAACAT+GGG | + | chr3.2:81052015-81052034 | MS.gene40950:CDS | 40.0% | |
| GAATGATGTGAACGTGAATG+GGG | + | chr3.2:81052612-81052631 | MS.gene40950:CDS | 40.0% | |
| GATCCCATGTTCTCTTTCTA+GGG | - | chr3.2:81052021-81052040 | None:intergenic | 40.0% | |
| GATGTTTGTGTTGGGAAACA+TGG | + | chr3.2:81053967-81053986 | MS.gene40950:intron | 40.0% | |
| GGATCAAGATCTGAACCATT+TGG | - | chr3.2:81052909-81052928 | None:intergenic | 40.0% | |
| GGTCCCTAATCTTGTTAAGA+AGG | - | chr3.2:81052066-81052085 | None:intergenic | 40.0% | |
| GGTGTTAAGAACTCTAAACG+TGG | + | chr3.2:81052409-81052428 | MS.gene40950:CDS | 40.0% | |
| TAGGGACCCTAATACTCAAA+AGG | + | chr3.2:81052078-81052097 | MS.gene40950:CDS | 40.0% | |
| TATCTGCTGCTAAGAAACGT+TGG | + | chr3.2:81052500-81052519 | MS.gene40950:CDS | 40.0% | |
| TCCATCATGATCTCCCTTAT+AGG | - | chr3.2:81053425-81053444 | None:intergenic | 40.0% | |
| TGAACCCTAGAAAGAGAACA+TGG | + | chr3.2:81052014-81052033 | MS.gene40950:CDS | 40.0% | |
| TGATCCCATGTTCTCTTTCT+AGG | - | chr3.2:81052022-81052041 | None:intergenic | 40.0% | |
| TTTGTTCCTGAAGATGAAGC+AGG | - | chr3.2:81052207-81052226 | None:intergenic | 40.0% | |
| ! | ATCAGTGCATCGGTAACTAT+TGG | - | chr3.2:81052935-81052954 | None:intergenic | 40.0% |
| ! | CACGCAGATCTCTGTATTTT+TGG | - | chr3.2:81053390-81053409 | None:intergenic | 40.0% |
| ! | GTTGCATCGCATTTTCAAAG+TGG | - | chr3.2:81053636-81053655 | None:intergenic | 40.0% |
| ! | TATGTGCCATTGTTCGAATG+CGG | + | chr3.2:81052826-81052845 | MS.gene40950:intron | 40.0% |
| ! | TGCATCGGTAACTATTGGAT+GGG | - | chr3.2:81052930-81052949 | None:intergenic | 40.0% |
| !! | TTGGCCATTTGTGTTGCTTA+AGG | + | chr3.2:81053222-81053241 | MS.gene40950:intron | 40.0% |
| AAATCTCACAGAGTACGAGG+AGG | + | chr3.2:81052258-81052277 | MS.gene40950:CDS | 45.0% | |
| AAGCAACCGCATTCGAACAA+TGG | - | chr3.2:81052835-81052854 | None:intergenic | 45.0% | |
| AAGCGAGTATCCAACCCAAT+TGG | - | chr3.2:81053666-81053685 | None:intergenic | 45.0% | |
| AATTAACAGGCCTTACTGCG+AGG | + | chr3.2:81053318-81053337 | MS.gene40950:CDS | 45.0% | |
| ACCAAAAGAAAAATCCGCGC+AGG | - | chr3.2:81053789-81053808 | None:intergenic | 45.0% | |
| ACCATTTGGTCTCGATCCAA+CGG | - | chr3.2:81052895-81052914 | None:intergenic | 45.0% | |
| ACTGATTGTGTGAATGCCTG+GGG | + | chr3.2:81052949-81052968 | MS.gene40950:intron | 45.0% | |
| AGCGAGTATCCAACCCAATT+GGG | - | chr3.2:81053665-81053684 | None:intergenic | 45.0% | |
| AGTCGTGTGACTTCAAGGAA+GGG | + | chr3.2:81052442-81052461 | MS.gene40950:CDS | 45.0% | |
| ATCTCACCTGCTTCATCTTC+AGG | + | chr3.2:81052198-81052217 | MS.gene40950:CDS | 45.0% | |
| CGACTGCATGCAATCCAAAT+TGG | + | chr3.2:81053173-81053192 | MS.gene40950:intron | 45.0% | |
| GACTTAGTCGTGTGACTTCA+AGG | + | chr3.2:81052437-81052456 | MS.gene40950:CDS | 45.0% | |
| GAGTATCTAGGCATACGTCT+AGG | + | chr3.2:81054065-81054084 | MS.gene40950:intron | 45.0% | |
| GCCTATAAGGGAGATCATGA+TGG | + | chr3.2:81053421-81053440 | MS.gene40950:CDS | 45.0% | |
| GGGAGTAGCAAAGCCTATAA+GGG | + | chr3.2:81053409-81053428 | MS.gene40950:CDS | 45.0% | |
| GGTAGGGGTAGGAAAATGAA+AGG | + | chr3.2:81052466-81052485 | MS.gene40950:CDS | 45.0% | |
| TAGGTCAACCCACGTATATG+TGG | + | chr3.2:81054084-81054103 | MS.gene40950:intron | 45.0% | |
| TAGTCGTGTGACTTCAAGGA+AGG | + | chr3.2:81052441-81052460 | MS.gene40950:CDS | 45.0% | |
| TATGCACGCAGTTGGAACAT+CGG | + | chr3.2:81053056-81053075 | MS.gene40950:intron | 45.0% | |
| TCAAGTCATATGCACGCAGT+TGG | + | chr3.2:81053048-81053067 | MS.gene40950:intron | 45.0% | |
| TGGGAGTAGCAAAGCCTATA+AGG | + | chr3.2:81053408-81053427 | MS.gene40950:CDS | 45.0% | |
| TTATGCTCTTCCTCGCAGTA+AGG | - | chr3.2:81053331-81053350 | None:intergenic | 45.0% | |
| ! | CACTGATTGTGTGAATGCCT+GGG | + | chr3.2:81052948-81052967 | MS.gene40950:intron | 45.0% |
| ! | CGACCAGCAAAGTACCAATT+TGG | - | chr3.2:81053190-81053209 | None:intergenic | 45.0% |
| ! | CTAAACTCCGTCACTTTCCT+TGG | - | chr3.2:81053280-81053299 | None:intergenic | 45.0% |
| ! | GTGCATCGGTAACTATTGGA+TGG | - | chr3.2:81052931-81052950 | None:intergenic | 45.0% |
| ! | TCCTGCGCGGATTTTTCTTT+TGG | + | chr3.2:81053785-81053804 | MS.gene40950:CDS | 45.0% |
| !! | ATCAAGTCTGAGTCGGCTTT+TGG | - | chr3.2:81052145-81052164 | None:intergenic | 45.0% |
| !! | CTCTTTCTAGGGTTCACTGA+AGG | - | chr3.2:81052010-81052029 | None:intergenic | 45.0% |
| !! | TTTCTAGGGTTCACTGAAGG+AGG | - | chr3.2:81052007-81052026 | None:intergenic | 45.0% |
| AAACACGATGGATCCCTCCA+TGG | - | chr3.2:81054779-81054798 | None:intergenic | 50.0% | |
| ACCGTTGGATCGAGACCAAA+TGG | + | chr3.2:81052891-81052910 | MS.gene40950:intron | 50.0% | |
| ACTTCAAGGAAGGGTGGTAG+GGG | + | chr3.2:81052451-81052470 | MS.gene40950:CDS | 50.0% | |
| ATGGAGGGATCCATCGTGTT+TGG | + | chr3.2:81054778-81054797 | MS.gene40950:CDS | 50.0% | |
| CGCAGGAGACGCAAAACTTT+GGG | - | chr3.2:81053772-81053791 | None:intergenic | 50.0% | |
| CTCGATCCAACGGTTACTGA+TGG | - | chr3.2:81052885-81052904 | None:intergenic | 50.0% | |
| GACTTCAAGGAAGGGTGGTA+GGG | + | chr3.2:81052450-81052469 | MS.gene40950:CDS | 50.0% | |
| GCAGGAGACGCAAAACTTTG+GGG | - | chr3.2:81053771-81053790 | None:intergenic | 50.0% | |
| GGGAAACATGGCAAGAGCTA+GGG | + | chr3.2:81053979-81053998 | MS.gene40950:intron | 50.0% | |
| GGTAGTTCGTCCAAACACGA+TGG | - | chr3.2:81054791-81054810 | None:intergenic | 50.0% | |
| GTCAGTCCATCAGTAACCGT+TGG | + | chr3.2:81052876-81052895 | MS.gene40950:intron | 50.0% | |
| GTGAACGTGAATGGGGAAGA+AGG | + | chr3.2:81052619-81052638 | MS.gene40950:CDS | 50.0% | |
| TGACTTCAAGGAAGGGTGGT+AGG | + | chr3.2:81052449-81052468 | MS.gene40950:CDS | 50.0% | |
| TGGGAAACATGGCAAGAGCT+AGG | + | chr3.2:81053978-81053997 | MS.gene40950:intron | 50.0% | |
| ! | AAAGTTTTGCGTCTCCTGCG+CGG | + | chr3.2:81053772-81053791 | MS.gene40950:CDS | 50.0% |
| !! | GCACTGATTGTGTGAATGCC+TGG | + | chr3.2:81052947-81052966 | MS.gene40950:intron | 50.0% |
| !! | TTACTGATGGACTGACTGCG+TGG | - | chr3.2:81052872-81052891 | None:intergenic | 50.0% |
| CGAATGCGGTTGCTTCCAGT+CGG | + | chr3.2:81052840-81052859 | MS.gene40950:intron | 55.0% | |
| CGTGTGACTTCAAGGAAGGG+TGG | + | chr3.2:81052445-81052464 | MS.gene40950:CDS | 55.0% | |
| GCGCAGGAGACGCAAAACTT+TGG | - | chr3.2:81053773-81053792 | None:intergenic | 55.0% | |
| ! | AAGACGGAGCGTTCATGCCA+TGG | + | chr3.2:81054759-81054778 | MS.gene40950:CDS | 55.0% |
| ACTGCGTGGAAGTTGCCGAC+TGG | - | chr3.2:81052858-81052877 | None:intergenic | 60.0% | |
| CAAGGAAGGGTGGTAGGGGT+AGG | + | chr3.2:81052455-81052474 | MS.gene40950:CDS | 60.0% | |
| CACGCAGTTGGAACATCGGC+AGG | + | chr3.2:81053060-81053079 | MS.gene40950:intron | 60.0% | |
| GCAAATTGCCTCAACGCCCC+AGG | - | chr3.2:81052968-81052987 | None:intergenic | 60.0% | |
| ! | ACGGAGCGTTCATGCCATGG+AGG | + | chr3.2:81054762-81054781 | MS.gene40950:CDS | 60.0% |
| ! | CGGAGCGTTCATGCCATGGA+GGG | + | chr3.2:81054763-81054782 | MS.gene40950:CDS | 60.0% |
| !! | TGTGAATGCCTGGGGCGTTG+AGG | + | chr3.2:81052957-81052976 | MS.gene40950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 81051998 | 81054820 | 81051998 | ID=MS.gene40950 |
| chr3.2 | mRNA | 81051998 | 81054820 | 81051998 | ID=MS.gene40950.t1;Parent=MS.gene40950 |
| chr3.2 | exon | 81051998 | 81052750 | 81051998 | ID=MS.gene40950.t1.exon1;Parent=MS.gene40950.t1 |
| chr3.2 | CDS | 81051998 | 81052750 | 81051998 | ID=cds.MS.gene40950.t1;Parent=MS.gene40950.t1 |
| chr3.2 | exon | 81053262 | 81053469 | 81053262 | ID=MS.gene40950.t1.exon2;Parent=MS.gene40950.t1 |
| chr3.2 | CDS | 81053262 | 81053469 | 81053262 | ID=cds.MS.gene40950.t1;Parent=MS.gene40950.t1 |
| chr3.2 | exon | 81053731 | 81053813 | 81053731 | ID=MS.gene40950.t1.exon3;Parent=MS.gene40950.t1 |
| chr3.2 | CDS | 81053731 | 81053813 | 81053731 | ID=cds.MS.gene40950.t1;Parent=MS.gene40950.t1 |
| chr3.2 | exon | 81054749 | 81054820 | 81054749 | ID=MS.gene40950.t1.exon4;Parent=MS.gene40950.t1 |
| chr3.2 | CDS | 81054749 | 81054820 | 81054749 | ID=cds.MS.gene40950.t1;Parent=MS.gene40950.t1 |
| Gene Sequence |
| Protein sequence |
