Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41395.t1 | XP_003592309.1 | 97.6 | 333 | 8 | 0 | 1 | 333 | 1 | 333 | 1.00E-170 | 609.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41395.t1 | Q0WUQ1 | 52.4 | 315 | 132 | 6 | 24 | 333 | 41 | 342 | 1.0e-78 | 295.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41395.t1 | G7IAQ7 | 97.6 | 333 | 8 | 0 | 1 | 333 | 1 | 333 | 7.3e-171 | 609.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene41395 | 0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene41395 | 0.83081 | 2.38E-55 | -1.69E-46 |
| MS.gene050237 | MS.gene41395 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene051029 | MS.gene41395 | 0.820002 | 8.63E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene41395 | 0.80596 | 1.04E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene41395 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene41395 | 0.818127 | 2.30E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene41395 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene41395 | 0.81473 | 1.33E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene41395 | 0.805428 | 1.34E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene41395 | 0.815818 | 7.61E-52 | -1.69E-46 |
| MS.gene052463 | MS.gene41395 | 0.860174 | 2.48E-63 | -1.69E-46 |
| MS.gene052516 | MS.gene41395 | 0.821866 | 3.22E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene41395 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene41395 | 0.82138 | 4.16E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene41395 | 0.834798 | 2.43E-56 | -1.69E-46 |
| MS.gene053164 | MS.gene41395 | 0.802197 | 6.29E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene41395 | 0.807321 | 5.35E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene41395 | 0.837609 | 4.70E-57 | -1.69E-46 |
| MS.gene054178 | MS.gene41395 | 0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene41395 | 0.819911 | 9.06E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene41395 | 0.826254 | 3.00E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene41395 | 0.802524 | 5.39E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene41395 | 0.81065 | 1.04E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene41395 | 0.81979 | 9.65E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene41395 | 0.823303 | 1.49E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene41395 | 0.81681 | 4.56E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene41395 | 0.853274 | 2.66E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene41395 | -0.814602 | 1.42E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene41395 | -0.804132 | 2.50E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene41395 | 0.801116 | 1.05E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene41395 | 0.853492 | 2.31E-61 | -1.69E-46 |
| MS.gene056390 | MS.gene41395 | 0.813229 | 2.84E-51 | -1.69E-46 |
| MS.gene056522 | MS.gene41395 | -0.810022 | 1.42E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene41395 | 0.800326 | 1.52E-48 | -1.69E-46 |
| MS.gene057294 | MS.gene41395 | 0.818843 | 1.59E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene41395 | 0.80733 | 5.33E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene41395 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene41395 | 0.81927 | 1.27E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene41395 | 0.81194 | 5.45E-51 | -1.69E-46 |
| MS.gene060122 | MS.gene41395 | -0.813818 | 2.11E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene41395 | 0.825085 | 5.68E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene41395 | 0.83975 | 1.31E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41395.t1 | MTR_1g101440 | 97.898 | 333 | 7 | 0 | 1 | 333 | 1 | 333 | 0.0 | 668 |
| MS.gene41395.t1 | MTR_0086s0010 | 62.778 | 360 | 102 | 7 | 1 | 333 | 1 | 355 | 2.11e-138 | 396 |
| MS.gene41395.t1 | MTR_4g102740 | 48.592 | 284 | 115 | 5 | 18 | 301 | 28 | 280 | 8.36e-77 | 237 |
| MS.gene41395.t1 | MTR_2g018860 | 45.070 | 213 | 114 | 1 | 17 | 229 | 25 | 234 | 3.75e-62 | 198 |
| MS.gene41395.t1 | MTR_7g069610 | 40.909 | 220 | 128 | 2 | 6 | 224 | 2 | 220 | 2.38e-52 | 172 |
| MS.gene41395.t1 | MTR_4g017810 | 45.455 | 187 | 102 | 0 | 39 | 225 | 19 | 205 | 2.15e-49 | 166 |
| MS.gene41395.t1 | MTR_2g018860 | 43.094 | 181 | 101 | 1 | 51 | 229 | 12 | 192 | 6.93e-45 | 152 |
| MS.gene41395.t1 | MTR_6g022020 | 39.815 | 108 | 61 | 1 | 21 | 128 | 37 | 140 | 5.08e-23 | 94.0 |
| MS.gene41395.t1 | MTR_6g022040 | 38.889 | 108 | 61 | 1 | 21 | 128 | 35 | 137 | 1.32e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41395.t1 | AT5G07220 | 51.327 | 339 | 123 | 8 | 1 | 333 | 1 | 303 | 4.08e-106 | 313 |
| MS.gene41395.t1 | AT5G52060 | 53.086 | 324 | 120 | 9 | 22 | 333 | 39 | 342 | 8.94e-102 | 303 |
| MS.gene41395.t1 | AT5G62100 | 48.649 | 333 | 121 | 7 | 1 | 332 | 1 | 284 | 1.16e-99 | 295 |
| MS.gene41395.t1 | AT5G62100 | 47.093 | 344 | 121 | 8 | 1 | 332 | 1 | 295 | 5.05e-96 | 286 |
| MS.gene41395.t1 | AT5G62100 | 57.767 | 206 | 77 | 2 | 1 | 206 | 1 | 196 | 1.94e-79 | 241 |
| MS.gene41395.t1 | AT5G62100 | 57.005 | 207 | 79 | 2 | 1 | 207 | 1 | 197 | 7.68e-79 | 240 |
| MS.gene41395.t1 | AT5G62100 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.00e-58 | 184 |
| MS.gene41395.t1 | AT5G62100 | 56.962 | 158 | 58 | 2 | 1 | 158 | 1 | 148 | 7.00e-58 | 184 |
| MS.gene41395.t1 | AT3G51780 | 40.367 | 218 | 113 | 3 | 22 | 225 | 10 | 224 | 1.00e-44 | 154 |
| MS.gene41395.t1 | AT5G14360 | 37.273 | 110 | 64 | 1 | 21 | 130 | 47 | 151 | 1.18e-21 | 90.5 |
| MS.gene41395.t1 | AT5G40630 | 35.455 | 110 | 68 | 2 | 21 | 130 | 55 | 161 | 2.72e-20 | 86.7 |
Find 86 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAAATTACAACCAAATT+TGG | 0.153385 | 1.4:+78751711 | MS.gene41395:CDS |
| TGTGATTGTTGCTCCAAATT+TGG | 0.200025 | 1.4:-78751724 | None:intergenic |
| ATTAGAGTTAAGGTTAAATT+TGG | 0.209267 | 1.4:+78750035 | MS.gene41395:CDS |
| TTGAAAATTAAGAATTCTAA+TGG | 0.299595 | 1.4:+78751604 | MS.gene41395:CDS |
| AAGTTGTAGTTACTACAAAA+TGG | 0.317039 | 1.4:+78751818 | MS.gene41395:CDS |
| TTTGTTGAGGCTTCTTCTTT+GGG | 0.318006 | 1.4:-78751636 | None:intergenic |
| CAACTAGAAGGCATGTCTAT+TGG | 0.328595 | 1.4:+78751685 | MS.gene41395:CDS |
| AAAATGTTAACCGGTCCAAC+TGG | 0.346168 | 1.4:+78750387 | MS.gene41395:CDS |
| TTGGAAGTAGATAGGCTTGC+AGG | 0.354563 | 1.4:+78750606 | MS.gene41395:CDS |
| CGAGTCTCGATCCGAGTCTA+AGG | 0.358675 | 1.4:-78749997 | None:intergenic |
| GCTGAAGTGACAGGAATTAA+TGG | 0.377943 | 1.4:-78751862 | None:intergenic |
| AACTAGAAGGCATGTCTATT+GGG | 0.380751 | 1.4:+78751686 | MS.gene41395:CDS |
| CCTTCTAGTTGCTCATCAAT+TGG | 0.382641 | 1.4:-78751673 | None:intergenic |
| CAGTTCATCCCAAGTTCAAA+TGG | 0.384999 | 1.4:+78751914 | MS.gene41395:CDS |
| AAGGCATTTCTTGACATAGT+AGG | 0.386721 | 1.4:+78750462 | MS.gene41395:CDS |
| CCACTCCAAACCTCTAGGTT+CGG | 0.402186 | 1.4:-78749937 | None:intergenic |
| TCCACCGACAATTAGAGTTA+AGG | 0.402326 | 1.4:+78750025 | MS.gene41395:CDS |
| AGTAGATAGGCTTGCAGGGC+AGG | 0.406809 | 1.4:+78750611 | MS.gene41395:CDS |
| TACCTCTTCTCTTGAGCAAT+AGG | 0.407029 | 1.4:-78750522 | None:intergenic |
| ATTAGTTCACAAGCAACATT+TGG | 0.407228 | 1.4:+78750080 | MS.gene41395:CDS |
| GGTTCCCGAACCTAGAGGTT+TGG | 0.408188 | 1.4:+78749932 | MS.gene41395:CDS |
| ACAAAAGTATGTTGAAACTT+TGG | 0.410750 | 1.4:+78751576 | MS.gene41395:CDS |
| AAATTAGCTTGGAAGTAGAT+AGG | 0.412929 | 1.4:+78750598 | MS.gene41395:CDS |
| GAAGTGTTCCCATTTGAACT+TGG | 0.421460 | 1.4:-78751923 | None:intergenic |
| CCAATTGATGAGCAACTAGA+AGG | 0.428546 | 1.4:+78751673 | MS.gene41395:CDS |
| TAAAGATAAATCAAAGTTAG+TGG | 0.440071 | 1.4:+78750488 | MS.gene41395:CDS |
| AAGAACGTGACGAATCATAA+TGG | 0.447206 | 1.4:+78749903 | MS.gene41395:CDS |
| CACTCCAAACCTCTAGGTTC+GGG | 0.452343 | 1.4:-78749936 | None:intergenic |
| TAAATCAAAGTTAGTGGTGA+TGG | 0.454330 | 1.4:+78750494 | MS.gene41395:CDS |
| GATGAGACCAGGAGGCTTGT+TGG | 0.454427 | 1.4:+78749962 | MS.gene41395:CDS |
| GCTTAAGTTGGATGGTATAG+TGG | 0.470152 | 1.4:+78750816 | MS.gene41395:CDS |
| ATCTATTTCAGAAATTAGCT+TGG | 0.470708 | 1.4:+78750587 | MS.gene41395:CDS |
| TTAACCTTAACTCTAATTGT+CGG | 0.472025 | 1.4:-78750029 | None:intergenic |
| TGCTCAAGAGAAGAGGTACT+TGG | 0.472792 | 1.4:+78750527 | MS.gene41395:CDS |
| GGGATGAACTGACTTATTAG+TGG | 0.486452 | 1.4:-78751902 | None:intergenic |
| GATGAATCAGTTGCTTAAGT+TGG | 0.489833 | 1.4:+78750804 | MS.gene41395:CDS |
| AGTTGTAGTTACTACAAAAT+GGG | 0.490238 | 1.4:+78751819 | MS.gene41395:CDS |
| CGTTGAACCAACAAGCCTCC+TGG | 0.506657 | 1.4:-78749969 | None:intergenic |
| AAGTGTTCCCATTTGAACTT+GGG | 0.507977 | 1.4:-78751922 | None:intergenic |
| GACGAATCATAATGGAGGTT+CGG | 0.509154 | 1.4:+78749911 | MS.gene41395:CDS |
| CAATCACAGAGGATCTCAAA+CGG | 0.512206 | 1.4:+78751739 | MS.gene41395:CDS |
| AAAGAATATAAAGATGGAAA+GGG | 0.514647 | 1.4:+78750557 | MS.gene41395:CDS |
| ACTAATGTTGACTTCATGAT+AGG | 0.516375 | 1.4:-78750063 | None:intergenic |
| GAAAGAATATAAAGATGGAA+AGG | 0.518162 | 1.4:+78750556 | MS.gene41395:CDS |
| GTGGTGTATCCCAGTTGGAC+CGG | 0.518541 | 1.4:-78750397 | None:intergenic |
| AATCAGTTGCTTAAGTTGGA+TGG | 0.521756 | 1.4:+78750808 | MS.gene41395:CDS |
| AATGAGAAAGAATATAAAGA+TGG | 0.522459 | 1.4:+78750551 | MS.gene41395:CDS |
| TGGATGGTATAGTGGCTGAT+GGG | 0.523352 | 1.4:+78750824 | MS.gene41395:CDS |
| TCTAGTTGCTCATCAATTGG+AGG | 0.528067 | 1.4:-78751670 | None:intergenic |
| GAATTGAAGAAAATGTTAAC+CGG | 0.528236 | 1.4:+78750378 | MS.gene41395:CDS |
| CTCGATCCGAGTCTAAGGTT+CGG | 0.528564 | 1.4:-78749992 | None:intergenic |
| CTCGAAACAATAATTAGTAA+AGG | 0.528826 | 1.4:+78750736 | MS.gene41395:CDS |
| CCGAACCTAGAGGTTTGGAG+TGG | 0.531731 | 1.4:+78749937 | MS.gene41395:CDS |
| ACCTTAACTCTAATTGTCGG+TGG | 0.538745 | 1.4:-78750026 | None:intergenic |
| CTTAGACTCGGATCGAGACT+CGG | 0.539623 | 1.4:+78749998 | MS.gene41395:CDS |
| AATCACAGAGGATCTCAAAC+GGG | 0.542642 | 1.4:+78751740 | MS.gene41395:CDS |
| AAACAAGGAGAGGGATTCAA+AGG | 0.544060 | 1.4:+78750443 | MS.gene41395:CDS |
| TTGGAGTGGGAGATGAGACC+AGG | 0.544656 | 1.4:+78749951 | MS.gene41395:CDS |
| TCTTGGTGGTGTATCCCAGT+TGG | 0.549913 | 1.4:-78750402 | None:intergenic |
| GATGAGGATGCTGAAGTGAC+AGG | 0.550910 | 1.4:-78751871 | None:intergenic |
| GAAACAATAATTAGTAAAGG+TGG | 0.554611 | 1.4:+78750739 | MS.gene41395:CDS |
| TGGAAGTAGATAGGCTTGCA+GGG | 0.562410 | 1.4:+78750607 | MS.gene41395:CDS |
| AGTTCATCCCAAGTTCAAAT+GGG | 0.563038 | 1.4:+78751915 | MS.gene41395:CDS |
| AAACAATAATTAGTAAAGGT+GGG | 0.565385 | 1.4:+78750740 | MS.gene41395:CDS |
| TTGGATGGTATAGTGGCTGA+TGG | 0.567402 | 1.4:+78750823 | MS.gene41395:CDS |
| GGATGGTATAGTGGCTGATG+GGG | 0.575853 | 1.4:+78750825 | MS.gene41395:CDS |
| ATCTCCCACTCCAAACCTCT+AGG | 0.584464 | 1.4:-78749942 | None:intergenic |
| TAAATTGCAGAGGAAAATGC+AGG | 0.597959 | 1.4:+78750852 | MS.gene41395:CDS |
| ATCAAAGTTAGTGGTGATGG+AGG | 0.599290 | 1.4:+78750497 | MS.gene41395:CDS |
| AATGTTGACTTCATGATAGG+TGG | 0.604883 | 1.4:-78750060 | None:intergenic |
| TCTGAGGTAGAATTCGTAGA+GGG | 0.608688 | 1.4:-78751796 | None:intergenic |
| ATCCTATTGCTCAAGAGAAG+AGG | 0.610825 | 1.4:+78750520 | MS.gene41395:CDS |
| AAATGTTAACCGGTCCAACT+GGG | 0.615599 | 1.4:+78750388 | MS.gene41395:CDS |
| TGTAGTAACTACAACTTCTG+AGG | 0.617406 | 1.4:-78751812 | None:intergenic |
| TTAACTCTAATTGTCGGTGG+AGG | 0.619157 | 1.4:-78750023 | None:intergenic |
| GGTTCGGTTCCCGAACCTAG+AGG | 0.622759 | 1.4:+78749927 | MS.gene41395:CDS |
| AAAATTAAGAATTCTAATGG+AGG | 0.625206 | 1.4:+78751607 | MS.gene41395:CDS |
| CGAACCTAGAGGTTTGGAGT+GGG | 0.637249 | 1.4:+78749938 | MS.gene41395:CDS |
| ATGGGGATGTTAAATTGCAG+AGG | 0.645911 | 1.4:+78750842 | MS.gene41395:CDS |
| TTCTGAGGTAGAATTCGTAG+AGG | 0.661653 | 1.4:-78751797 | None:intergenic |
| ATTAGTGGATGAGCTTGATG+AGG | 0.669613 | 1.4:-78751887 | None:intergenic |
| AACGTGACGAATCATAATGG+AGG | 0.690876 | 1.4:+78749906 | MS.gene41395:CDS |
| TCAACGCCGAACCTTAGACT+CGG | 0.694481 | 1.4:+78749986 | MS.gene41395:CDS |
| GAGTGGGAGATGAGACCAGG+AGG | 0.701762 | 1.4:+78749954 | MS.gene41395:CDS |
| GAAGTGACAGGAATTAATGG+TGG | 0.757122 | 1.4:-78751859 | None:intergenic |
| ATTTGGAGCAACAATCACAG+AGG | 0.771841 | 1.4:+78751728 | MS.gene41395:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAATAAA+AGG | - | chr1.4:78750122-78750141 | None:intergenic | 0.0% |
| !! | TAATAATAATAATAATAAAA+GGG | - | chr1.4:78750121-78750140 | None:intergenic | 0.0% |
| !! | ATAATAATAATAATAAAAGG+GGG | - | chr1.4:78750119-78750138 | None:intergenic | 10.0% |
| !! | ATTAATAAAATTAGATGTTA+GGG | - | chr1.4:78751057-78751076 | None:intergenic | 10.0% |
| !! | GACAAAAAAAAAAAAAAAAT+TGG | - | chr1.4:78751120-78751139 | None:intergenic | 10.0% |
| !! | AAAAATTATGACATCTAATT+TGG | + | chr1.4:78750983-78751002 | MS.gene41395:intron | 15.0% |
| !! | ATATTTAATGCTTGAATAAT+TGG | + | chr1.4:78750673-78750692 | MS.gene41395:intron | 15.0% |
| !! | CATTAATAAAATTAGATGTT+AGG | - | chr1.4:78751058-78751077 | None:intergenic | 15.0% |
| !! | GATTAAATAAATCATTTATC+TGG | + | chr1.4:78750266-78750285 | MS.gene41395:intron | 15.0% |
| !! | TAATAATAATAATAAAAGGG+GGG | - | chr1.4:78750118-78750137 | None:intergenic | 15.0% |
| !! | TTAAATTAGGTCATTTAAAA+TGG | - | chr1.4:78751157-78751176 | None:intergenic | 15.0% |
| !! | TTGAAAATTAAGAATTCTAA+TGG | + | chr1.4:78751604-78751623 | MS.gene41395:CDS | 15.0% |
| !!! | ACATTCATTAATGATTTTAT+TGG | + | chr1.4:78751496-78751515 | MS.gene41395:intron | 15.0% |
| !!! | ATAATGCACATTTTTAAATT+AGG | - | chr1.4:78751170-78751189 | None:intergenic | 15.0% |
| !!! | GATATTTAAAATCAAAATTG+TGG | + | chr1.4:78751315-78751334 | MS.gene41395:intron | 15.0% |
| !!! | TAAATTAGGTCATTTAAAAT+GGG | - | chr1.4:78751156-78751175 | None:intergenic | 15.0% |
| !!! | TATAAAATATTTTTTGGTCT+TGG | - | chr1.4:78750422-78750441 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATGATAAGGT+TGG | + | chr1.4:78750645-78750664 | MS.gene41395:intron | 15.0% |
| !! | AAAAATCAATCATTCGATAT+CGG | - | chr1.4:78750313-78750332 | None:intergenic | 20.0% |
| !! | AAAATTAAGAATTCTAATGG+AGG | + | chr1.4:78751607-78751626 | MS.gene41395:CDS | 20.0% |
| !! | AAACAATAATTAGTAAAGGT+GGG | + | chr1.4:78750740-78750759 | MS.gene41395:CDS | 20.0% |
| !! | AAAGAATATAAAGATGGAAA+GGG | + | chr1.4:78750557-78750576 | MS.gene41395:CDS | 20.0% |
| !! | AATAATAATAATAAAAGGGG+GGG | - | chr1.4:78750117-78750136 | None:intergenic | 20.0% |
| !! | AATGAGAAAGAATATAAAGA+TGG | + | chr1.4:78750551-78750570 | MS.gene41395:CDS | 20.0% |
| !! | ATTAGAGTTAAGGTTAAATT+TGG | + | chr1.4:78750035-78750054 | MS.gene41395:CDS | 20.0% |
| !! | TAAAGATAAATCAAAGTTAG+TGG | + | chr1.4:78750488-78750507 | MS.gene41395:CDS | 20.0% |
| !! | TCATAAATTACAACCAAATT+TGG | + | chr1.4:78751711-78751730 | MS.gene41395:CDS | 20.0% |
| !!! | ATGGTAGTTAATAATTTTGA+AGG | + | chr1.4:78751543-78751562 | MS.gene41395:intron | 20.0% |
| !!! | ATTTTATAAAAACAAGGAGA+GGG | + | chr1.4:78750434-78750453 | MS.gene41395:CDS | 20.0% |
| !!! | TATTTTATAAAAACAAGGAG+AGG | + | chr1.4:78750433-78750452 | MS.gene41395:CDS | 20.0% |
| ! | AAGTTGTAGTTACTACAAAA+TGG | + | chr1.4:78751818-78751837 | MS.gene41395:CDS | 25.0% |
| ! | AGTTGTAGTTACTACAAAAT+GGG | + | chr1.4:78751819-78751838 | MS.gene41395:CDS | 25.0% |
| ! | ATCTATTTCAGAAATTAGCT+TGG | + | chr1.4:78750587-78750606 | MS.gene41395:CDS | 25.0% |
| ! | ATGAAAATAACATTTAGTCC+CGG | + | chr1.4:78751012-78751031 | MS.gene41395:intron | 25.0% |
| ! | ATGATATGAATTGCTTGATT+AGG | + | chr1.4:78750705-78750724 | MS.gene41395:intron | 25.0% |
| ! | CTCGAAACAATAATTAGTAA+AGG | + | chr1.4:78750736-78750755 | MS.gene41395:CDS | 25.0% |
| ! | GAAACAATAATTAGTAAAGG+TGG | + | chr1.4:78750739-78750758 | MS.gene41395:CDS | 25.0% |
| ! | GAAAGAATATAAAGATGGAA+AGG | + | chr1.4:78750556-78750575 | MS.gene41395:CDS | 25.0% |
| ! | GAATTGAAGAAAATGTTAAC+CGG | + | chr1.4:78750378-78750397 | MS.gene41395:CDS | 25.0% |
| ! | TAGTACATTATTGCTTCTAA+TGG | + | chr1.4:78751524-78751543 | MS.gene41395:intron | 25.0% |
| ! | TCAACTGTGTCATATAATAT+AGG | + | chr1.4:78751357-78751376 | MS.gene41395:intron | 25.0% |
| ! | TCAATTTAAGAGGAAATCTA+AGG | - | chr1.4:78750929-78750948 | None:intergenic | 25.0% |
| ! | TTAACCTTAACTCTAATTGT+CGG | - | chr1.4:78750032-78750051 | None:intergenic | 25.0% |
| ! | TTTATTAATGTGTCCACTTT+AGG | + | chr1.4:78751068-78751087 | MS.gene41395:intron | 25.0% |
| !! | ACAAAAGTATGTTGAAACTT+TGG | + | chr1.4:78751576-78751595 | MS.gene41395:CDS | 25.0% |
| !! | CTTTCTCATTGATTAATGTT+TGG | + | chr1.4:78750345-78750364 | MS.gene41395:intron | 25.0% |
| !!! | AAAATATTTTTTGGTCTTGG+TGG | - | chr1.4:78750419-78750438 | None:intergenic | 25.0% |
| !!! | CACTCTAAAATCAATTTAAG+AGG | - | chr1.4:78750939-78750958 | None:intergenic | 25.0% |
| ATTAGTTCACAAGCAACATT+TGG | + | chr1.4:78750080-78750099 | MS.gene41395:CDS | 30.0% | |
| TAAATCAAAGTTAGTGGTGA+TGG | + | chr1.4:78750494-78750513 | MS.gene41395:CDS | 30.0% | |
| TGTCATATAATATAGGACGA+CGG | + | chr1.4:78751364-78751383 | MS.gene41395:intron | 30.0% | |
| ! | AAATTAGCTTGGAAGTAGAT+AGG | + | chr1.4:78750598-78750617 | MS.gene41395:CDS | 30.0% |
| ! | TTAGGTCATTTAAAATGGGA+CGG | - | chr1.4:78751152-78751171 | None:intergenic | 30.0% |
| !! | ACTAATGTTGACTTCATGAT+AGG | - | chr1.4:78750066-78750085 | None:intergenic | 30.0% |
| !! | ATTAATGTTTGGTGTCATAG+GGG | + | chr1.4:78750356-78750375 | MS.gene41395:intron | 30.0% |
| !! | GATTAATGTTTGGTGTCATA+GGG | + | chr1.4:78750355-78750374 | MS.gene41395:intron | 30.0% |
| !! | TGATTAATGTTTGGTGTCAT+AGG | + | chr1.4:78750354-78750373 | MS.gene41395:intron | 30.0% |
| !!! | GGCAATTTTACTTTTTGTTG+AGG | - | chr1.4:78751652-78751671 | None:intergenic | 30.0% |
| AACATTTAGTCCCGGAAAAA+CGG | + | chr1.4:78751020-78751039 | MS.gene41395:intron | 35.0% | |
| AAGAACGTGACGAATCATAA+TGG | + | chr1.4:78749903-78749922 | MS.gene41395:CDS | 35.0% | |
| AAGTGTTCCCATTTGAACTT+GGG | - | chr1.4:78751925-78751944 | None:intergenic | 35.0% | |
| AGTTCATCCCAAGTTCAAAT+GGG | + | chr1.4:78751915-78751934 | MS.gene41395:CDS | 35.0% | |
| ATATAATATAGGACGACGGA+GGG | + | chr1.4:78751368-78751387 | MS.gene41395:intron | 35.0% | |
| GATGAATCAGTTGCTTAAGT+TGG | + | chr1.4:78750804-78750823 | MS.gene41395:CDS | 35.0% | |
| TAAATTGCAGAGGAAAATGC+AGG | + | chr1.4:78750852-78750871 | MS.gene41395:CDS | 35.0% | |
| TGTAGTAACTACAACTTCTG+AGG | - | chr1.4:78751815-78751834 | None:intergenic | 35.0% | |
| TGTGATTGTTGCTCCAAATT+TGG | - | chr1.4:78751727-78751746 | None:intergenic | 35.0% | |
| TTTGTTGAGGCTTCTTCTTT+GGG | - | chr1.4:78751639-78751658 | None:intergenic | 35.0% | |
| ! | AACTAGAAGGCATGTCTATT+GGG | + | chr1.4:78751686-78751705 | MS.gene41395:CDS | 35.0% |
| ! | AAGGCATTTCTTGACATAGT+AGG | + | chr1.4:78750462-78750481 | MS.gene41395:CDS | 35.0% |
| ! | TTTTGTTGAGGCTTCTTCTT+TGG | - | chr1.4:78751640-78751659 | None:intergenic | 35.0% |
| !! | AATCAGTTGCTTAAGTTGGA+TGG | + | chr1.4:78750808-78750827 | MS.gene41395:CDS | 35.0% |
| !! | AATGTTGACTTCATGATAGG+TGG | - | chr1.4:78750063-78750082 | None:intergenic | 35.0% |
| !! | ACTATGTAATCCCGTTTTTC+CGG | - | chr1.4:78751034-78751053 | None:intergenic | 35.0% |
| AAAATGTTAACCGGTCCAAC+TGG | + | chr1.4:78750387-78750406 | MS.gene41395:CDS | 40.0% | |
| AAACAAGGAGAGGGATTCAA+AGG | + | chr1.4:78750443-78750462 | MS.gene41395:CDS | 40.0% | |
| AAATGTTAACCGGTCCAACT+GGG | + | chr1.4:78750388-78750407 | MS.gene41395:CDS | 40.0% | |
| AACGTGACGAATCATAATGG+AGG | + | chr1.4:78749906-78749925 | MS.gene41395:CDS | 40.0% | |
| AATCACAGAGGATCTCAAAC+GGG | + | chr1.4:78751740-78751759 | MS.gene41395:CDS | 40.0% | |
| ACATTTAGTCCCGGAAAAAC+GGG | + | chr1.4:78751021-78751040 | MS.gene41395:intron | 40.0% | |
| ACCTTAACTCTAATTGTCGG+TGG | - | chr1.4:78750029-78750048 | None:intergenic | 40.0% | |
| ATCCTATTGCTCAAGAGAAG+AGG | + | chr1.4:78750520-78750539 | MS.gene41395:CDS | 40.0% | |
| ATGGGGATGTTAAATTGCAG+AGG | + | chr1.4:78750842-78750861 | MS.gene41395:CDS | 40.0% | |
| CAATCACAGAGGATCTCAAA+CGG | + | chr1.4:78751739-78751758 | MS.gene41395:CDS | 40.0% | |
| CAGTTCATCCCAAGTTCAAA+TGG | + | chr1.4:78751914-78751933 | MS.gene41395:CDS | 40.0% | |
| CATATAATATAGGACGACGG+AGG | + | chr1.4:78751367-78751386 | MS.gene41395:intron | 40.0% | |
| CCAATTGATGAGCAACTAGA+AGG | + | chr1.4:78751673-78751692 | MS.gene41395:CDS | 40.0% | |
| GAAGTGACAGGAATTAATGG+TGG | - | chr1.4:78751862-78751881 | None:intergenic | 40.0% | |
| GCTGAAGTGACAGGAATTAA+TGG | - | chr1.4:78751865-78751884 | None:intergenic | 40.0% | |
| TACCTCTTCTCTTGAGCAAT+AGG | - | chr1.4:78750525-78750544 | None:intergenic | 40.0% | |
| TCCACCGACAATTAGAGTTA+AGG | + | chr1.4:78750025-78750044 | MS.gene41395:CDS | 40.0% | |
| TCTAGTTGCTCATCAATTGG+AGG | - | chr1.4:78751673-78751692 | None:intergenic | 40.0% | |
| TTAACTCTAATTGTCGGTGG+AGG | - | chr1.4:78750026-78750045 | None:intergenic | 40.0% | |
| ! | ATTAGTGGATGAGCTTGATG+AGG | - | chr1.4:78751890-78751909 | None:intergenic | 40.0% |
| ! | ATTTGGAGCAACAATCACAG+AGG | + | chr1.4:78751728-78751747 | MS.gene41395:CDS | 40.0% |
| ! | CAACTAGAAGGCATGTCTAT+TGG | + | chr1.4:78751685-78751704 | MS.gene41395:CDS | 40.0% |
| ! | CCTTCTAGTTGCTCATCAAT+TGG | - | chr1.4:78751676-78751695 | None:intergenic | 40.0% |
| ! | GAAGTGTTCCCATTTGAACT+TGG | - | chr1.4:78751926-78751945 | None:intergenic | 40.0% |
| ! | GACGAATCATAATGGAGGTT+CGG | + | chr1.4:78749911-78749930 | MS.gene41395:CDS | 40.0% |
| ! | GGGATGAACTGACTTATTAG+TGG | - | chr1.4:78751905-78751924 | None:intergenic | 40.0% |
| ! | GTCATTTAAAATGGGACGGA+GGG | - | chr1.4:78751148-78751167 | None:intergenic | 40.0% |
| ! | TCTGAGGTAGAATTCGTAGA+GGG | - | chr1.4:78751799-78751818 | None:intergenic | 40.0% |
| !! | ATCAAAGTTAGTGGTGATGG+AGG | + | chr1.4:78750497-78750516 | MS.gene41395:CDS | 40.0% |
| !! | CTATGTAATCCCGTTTTTCC+GGG | - | chr1.4:78751033-78751052 | None:intergenic | 40.0% |
| !! | GCTTAAGTTGGATGGTATAG+TGG | + | chr1.4:78750816-78750835 | MS.gene41395:CDS | 40.0% |
| !! | TTCTGAGGTAGAATTCGTAG+AGG | - | chr1.4:78751800-78751819 | None:intergenic | 40.0% |
| GTGTCCACTTTAGGTCACAA+GGG | + | chr1.4:78751077-78751096 | MS.gene41395:intron | 45.0% | |
| TGGAAGTAGATAGGCTTGCA+GGG | + | chr1.4:78750607-78750626 | MS.gene41395:CDS | 45.0% | |
| TGGATGGTATAGTGGCTGAT+GGG | + | chr1.4:78750824-78750843 | MS.gene41395:CDS | 45.0% | |
| TGTGTCCACTTTAGGTCACA+AGG | + | chr1.4:78751076-78751095 | MS.gene41395:intron | 45.0% | |
| TTGGAAGTAGATAGGCTTGC+AGG | + | chr1.4:78750606-78750625 | MS.gene41395:CDS | 45.0% | |
| TTGGATGGTATAGTGGCTGA+TGG | + | chr1.4:78750823-78750842 | MS.gene41395:CDS | 45.0% | |
| TTGTCCCTTGTGACCTAAAG+TGG | - | chr1.4:78751084-78751103 | None:intergenic | 45.0% | |
| ! | GGTCATTTAAAATGGGACGG+AGG | - | chr1.4:78751149-78751168 | None:intergenic | 45.0% |
| !! | TGCTCAAGAGAAGAGGTACT+TGG | + | chr1.4:78750527-78750546 | MS.gene41395:CDS | 45.0% |
| !! | AATAATAATAATAATAAAAG+GGG | - | chr1.4:78750120-78750139 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTATAAAAACA+AGG | + | chr1.4:78750428-78750447 | MS.gene41395:CDS | 5.0% |
| !!! | TGTTTTTATAAAATATTTTT+TGG | - | chr1.4:78750428-78750447 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTATGATA+AGG | + | chr1.4:78750641-78750660 | MS.gene41395:intron | 5.0% |
| ATCTCCCACTCCAAACCTCT+AGG | - | chr1.4:78749945-78749964 | None:intergenic | 50.0% | |
| CACTCCAAACCTCTAGGTTC+GGG | - | chr1.4:78749939-78749958 | None:intergenic | 50.0% | |
| CCACTCCAAACCTCTAGGTT+CGG | - | chr1.4:78749940-78749959 | None:intergenic | 50.0% | |
| CTTAGACTCGGATCGAGACT+CGG | + | chr1.4:78749998-78750017 | MS.gene41395:CDS | 50.0% | |
| GATGAGGATGCTGAAGTGAC+AGG | - | chr1.4:78751874-78751893 | None:intergenic | 50.0% | |
| GGATGGTATAGTGGCTGATG+GGG | + | chr1.4:78750825-78750844 | MS.gene41395:CDS | 50.0% | |
| GTGGAATGACAGACGTGACA+GGG | + | chr1.4:78751334-78751353 | MS.gene41395:intron | 50.0% | |
| TCAACGCCGAACCTTAGACT+CGG | + | chr1.4:78749986-78750005 | MS.gene41395:CDS | 50.0% | |
| TGTGGAATGACAGACGTGAC+AGG | + | chr1.4:78751333-78751352 | MS.gene41395:intron | 50.0% | |
| ! | CGAACCTAGAGGTTTGGAGT+GGG | + | chr1.4:78749938-78749957 | MS.gene41395:CDS | 50.0% |
| ! | CTCGATCCGAGTCTAAGGTT+CGG | - | chr1.4:78749995-78750014 | None:intergenic | 50.0% |
| !! | TCTTGGTGGTGTATCCCAGT+TGG | - | chr1.4:78750405-78750424 | None:intergenic | 50.0% |
| AGTAGATAGGCTTGCAGGGC+AGG | + | chr1.4:78750611-78750630 | MS.gene41395:CDS | 55.0% | |
| CCGAACCTAGAGGTTTGGAG+TGG | + | chr1.4:78749937-78749956 | MS.gene41395:CDS | 55.0% | |
| CGAGTCTCGATCCGAGTCTA+AGG | - | chr1.4:78750000-78750019 | None:intergenic | 55.0% | |
| CGTTGAACCAACAAGCCTCC+TGG | - | chr1.4:78749972-78749991 | None:intergenic | 55.0% | |
| GATGAGACCAGGAGGCTTGT+TGG | + | chr1.4:78749962-78749981 | MS.gene41395:CDS | 55.0% | |
| GGTTCCCGAACCTAGAGGTT+TGG | + | chr1.4:78749932-78749951 | MS.gene41395:CDS | 55.0% | |
| GTGGTGTATCCCAGTTGGAC+CGG | - | chr1.4:78750400-78750419 | None:intergenic | 55.0% | |
| TTGGAGTGGGAGATGAGACC+AGG | + | chr1.4:78749951-78749970 | MS.gene41395:CDS | 55.0% | |
| GAGTGGGAGATGAGACCAGG+AGG | + | chr1.4:78749954-78749973 | MS.gene41395:CDS | 60.0% | |
| ! | GGTTCGGTTCCCGAACCTAG+AGG | + | chr1.4:78749927-78749946 | MS.gene41395:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78749891 | 78751951 | 78749891 | ID=MS.gene41395 |
| chr1.4 | mRNA | 78749891 | 78751951 | 78749891 | ID=MS.gene41395.t1;Parent=MS.gene41395 |
| chr1.4 | exon | 78749891 | 78750101 | 78749891 | ID=MS.gene41395.t1.exon1;Parent=MS.gene41395.t1 |
| chr1.4 | CDS | 78749891 | 78750101 | 78749891 | ID=cds.MS.gene41395.t1;Parent=MS.gene41395.t1 |
| chr1.4 | exon | 78750376 | 78750632 | 78750376 | ID=MS.gene41395.t1.exon2;Parent=MS.gene41395.t1 |
| chr1.4 | CDS | 78750376 | 78750632 | 78750376 | ID=cds.MS.gene41395.t1;Parent=MS.gene41395.t1 |
| chr1.4 | exon | 78750727 | 78750873 | 78750727 | ID=MS.gene41395.t1.exon3;Parent=MS.gene41395.t1 |
| chr1.4 | CDS | 78750727 | 78750873 | 78750727 | ID=cds.MS.gene41395.t1;Parent=MS.gene41395.t1 |
| chr1.4 | exon | 78751565 | 78751951 | 78751565 | ID=MS.gene41395.t1.exon4;Parent=MS.gene41395.t1 |
| chr1.4 | CDS | 78751565 | 78751951 | 78751565 | ID=cds.MS.gene41395.t1;Parent=MS.gene41395.t1 |
| Gene Sequence |
| Protein sequence |
