AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051029


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051029.t1 MTR_8g023050 92.122 622 49 0 1 622 1 622 0.0 1187
MS.gene051029.t1 MTR_4g058760 28.094 299 178 9 48 332 588 863 6.07e-29 123
MS.gene051029.t1 MTR_2g041990 52.174 92 18 1 65 156 112 177 7.39e-22 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051029.t1 AT5G12260 53.514 626 261 10 4 622 22 624 0.0 633
MS.gene051029.t1 AT5G60700 28.571 280 163 7 48 311 320 578 5.78e-25 110
MS.gene051029.t1 AT5G60700 28.571 280 163 7 48 311 584 842 9.59e-25 110

Find 154 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCTAGACTTCAATATTT+TGG 0.079759 8.3:+68947359 MS.gene051029:CDS
TTTAATTAGAAAAGTGAAAT+TGG 0.163156 8.3:-68944339 None:intergenic
GTATATTGTAACAAAATTAT+TGG 0.174626 8.3:+68948010 MS.gene051029:CDS
AAGCGAATCACGTAGAATTT+TGG 0.191572 8.3:+68944505 MS.gene051029:CDS
TATAAGGAATTATATACTTA+TGG 0.233682 8.3:+68947581 MS.gene051029:CDS
GATGGGTTTGAGTGGAAATA+TGG 0.234846 8.3:+68944536 MS.gene051029:CDS
GAATTAAGGTTTACTTGAAT+TGG 0.248444 8.3:-68944305 None:intergenic
TGTAGCCATGGCCGACTCTT+TGG 0.269350 8.3:+68947947 MS.gene051029:CDS
CTGAACTCTTTCCATGGCTT+TGG 0.280942 8.3:-68946974 None:intergenic
AATTAAGGTTTACTTGAATT+GGG 0.282391 8.3:-68944304 None:intergenic
AGCCTTTGAGTAGTTTAAAA+TGG 0.295749 8.3:+68947388 MS.gene051029:CDS
AACTGGGAATGTGGGGTTGC+AGG 0.304283 8.3:+68944580 MS.gene051029:CDS
GTAGCCATGGCCGACTCTTT+GGG 0.306253 8.3:+68947948 MS.gene051029:CDS
TAAGTATAACACATGGGTTT+TGG 0.306286 8.3:+68947776 MS.gene051029:CDS
TTAATTAGAAAAGTGAAATT+GGG 0.310434 8.3:-68944338 None:intergenic
AACGGAGTCGAGGCGGTTAA+AGG 0.318681 8.3:-68944369 None:intergenic
TTCCAATGCTAGTTACAAAT+TGG 0.318749 8.3:-68947665 None:intergenic
ATGAGAGTGATGAAGATTAT+TGG 0.320676 8.3:-68944200 None:intergenic
CAAAGCCATGGAAAGAGTTC+AGG 0.324713 8.3:+68946975 MS.gene051029:CDS
AGAGTTGATGAGACTTCTTT+TGG 0.347350 8.3:+68948056 MS.gene051029:CDS
AATTGGTCTACATTGATTAC+AGG 0.347667 8.3:-68947648 None:intergenic
GTGTTAGTAAATCTTCTATA+GGG 0.357806 8.3:+68948099 MS.gene051029:CDS
CAACGTGCAAGGTTTGTTCC+AGG 0.371232 8.3:+68944770 MS.gene051029:CDS
TCCTCTAGTAACTGAGAATC+AGG 0.386913 8.3:-68947333 None:intergenic
ATTGTGAATTTCTATTATAA+TGG 0.387193 8.3:+68944710 MS.gene051029:CDS
ATAAGGAATTATATACTTAT+GGG 0.390689 8.3:+68947582 MS.gene051029:CDS
ACTTTGAGAGGCTAAATATA+AGG 0.395045 8.3:+68947565 MS.gene051029:CDS
TTTCCAAAATATTGAAGTCT+AGG 0.397017 8.3:-68947362 None:intergenic
CATCGTCTAGTGAGAAAATC+TGG 0.398816 8.3:+68947901 MS.gene051029:CDS
GGGATAGAAAGTTGGTATAT+TGG 0.404991 8.3:+68948120 MS.gene051029:CDS
GGAACGGAGGCAACGGGAAA+CGG 0.405809 8.3:-68944387 None:intergenic
GAGTTCCTCACAAACCTTCC+CGG 0.413102 8.3:-68947438 None:intergenic
CGACATCGGAATTGTTCAAC+GGG 0.418626 8.3:-68944472 None:intergenic
ATTACCATCCCCTCAAGAAA+TGG 0.420016 8.3:-68947034 None:intergenic
AATAATAAATTGACTTTGCA+AGG 0.420449 8.3:+68947687 MS.gene051029:CDS
AGCGAGGGAACGGAGGCAAC+GGG 0.422244 8.3:-68944393 None:intergenic
TGGTTGGAGGCATGGTGGCC+TGG 0.423465 8.3:+68944608 MS.gene051029:CDS
AAGGTGGTGCATTATAGAAC+TGG 0.428956 8.3:+68944563 MS.gene051029:CDS
GACCAATTTGTAACTAGCAT+TGG 0.442136 8.3:+68947663 MS.gene051029:CDS
GTGAGGAACTCCGAAGAACT+TGG 0.447431 8.3:+68947450 MS.gene051029:CDS
ATGGGTTTGAGTGGAAATAT+GGG 0.448133 8.3:+68944537 MS.gene051029:CDS
CTCGAGCAATACGTCGGAAG+TGG 0.448985 8.3:-68947814 None:intergenic
GGTGTTAGTAAATCTTCTAT+AGG 0.449571 8.3:+68948098 MS.gene051029:CDS
CAGCGAGGGAACGGAGGCAA+CGG 0.451727 8.3:-68944394 None:intergenic
TGTTGTAGAGGATGATTTGG+AGG 0.455071 8.3:+68944652 MS.gene051029:CDS
AAGTAAAGTTCCAAGTTCTT+CGG 0.458975 8.3:-68947460 None:intergenic
TTACAATATACACAAAACTT+AGG 0.462586 8.3:-68947998 None:intergenic
CACAAAACTTAGGCTACCTT+GGG 0.463096 8.3:-68947988 None:intergenic
ACACAAAACTTAGGCTACCT+TGG 0.465958 8.3:-68947989 None:intergenic
TGCAACACAGAAGTCGTAGT+TGG 0.468556 8.3:-68947847 None:intergenic
ATTCCTTAGTTGATCTGTCC+AGG 0.469134 8.3:+68947616 MS.gene051029:CDS
TTAGATTCGGTGATTGAAGA+TGG 0.470264 8.3:-68944260 None:intergenic
GGCAATAAACCATTTCTTGA+GGG 0.470270 8.3:+68947025 MS.gene051029:CDS
GCAACACAGAAGTCGTAGTT+GGG 0.475359 8.3:-68947846 None:intergenic
TACCAGTTGGTTGGTACGTG+GGG 0.476158 8.3:+68946938 MS.gene051029:CDS
GTAAACTACGGGAAAACTGC+TGG 0.477601 8.3:+68947309 MS.gene051029:CDS
ATCAAGTTTATTCAATCCCA+TGG 0.479740 8.3:+68947219 MS.gene051029:CDS
TACAGGTTGGTATAAGAAGA+TGG 0.482010 8.3:+68947170 MS.gene051029:CDS
GGTACAAGAAAAGCCGTGTC+TGG 0.487955 8.3:-68946919 None:intergenic
TGTGAAATTAGGGTTAGATT+CGG 0.488066 8.3:-68944273 None:intergenic
AGTGTCTCTCACAGAGATGC+TGG 0.499752 8.3:+68947285 MS.gene051029:CDS
CATTATAGAACTGGGAATGT+GGG 0.500233 8.3:+68944572 MS.gene051029:CDS
TTCCAAAATATTGAAGTCTA+GGG 0.502471 8.3:-68947361 None:intergenic
GGCTCAAAGAGTTGAATTTG+TGG 0.504607 8.3:+68948177 MS.gene051029:CDS
TAAACCATTTCTTGAGGGGA+TGG 0.511562 8.3:+68947030 MS.gene051029:CDS
TTCTATAGGGGATAGAAAGT+TGG 0.511950 8.3:+68948112 MS.gene051029:CDS
TAGATTCGGTGATTGAAGAT+GGG 0.513385 8.3:-68944259 None:intergenic
ATTAAGGTTTACTTGAATTG+GGG 0.518110 8.3:-68944303 None:intergenic
TTGTTTCAGAGAAGTACGTC+CGG 0.518864 8.3:+68947419 MS.gene051029:CDS
GGCATGAATATTGGTTCAGA+TGG 0.522427 8.3:+68948077 MS.gene051029:CDS
GATTACAGGATGTCCCCTCC+TGG 0.522682 8.3:-68947634 None:intergenic
TAATTAGAAAAGTGAAATTG+GGG 0.522777 8.3:-68944337 None:intergenic
GTGACAAACCACAGCAGTGC+AGG 0.523193 8.3:-68948219 None:intergenic
GTTGCAGGCACAATGGTTGG+AGG 0.525815 8.3:+68944595 MS.gene051029:CDS
GGTATATTGGTCAACTGAGA+TGG 0.527978 8.3:+68948133 MS.gene051029:CDS
TGTACCAGTTGGTTGGTACG+TGG 0.531077 8.3:+68946936 MS.gene051029:CDS
GTACCAGTTGGTTGGTACGT+GGG 0.532663 8.3:+68946937 MS.gene051029:CDS
ACTTATTATGCAACTTTGAG+AGG 0.533453 8.3:+68947553 MS.gene051029:CDS
CCTCCTGGACAGATCAACTA+AGG 0.538149 8.3:-68947619 None:intergenic
GCATTATAGAACTGGGAATG+TGG 0.539284 8.3:+68944571 MS.gene051029:CDS
AATCAGTGGCAGCGAGGGAA+CGG 0.539309 8.3:-68944403 None:intergenic
ACAGGTTGGTATAAGAAGAT+GGG 0.539416 8.3:+68947171 MS.gene051029:CDS
GGGGTTGCAGGCACAATGGT+TGG 0.539947 8.3:+68944592 MS.gene051029:CDS
GGTGATTGAAGATGGGAGAG+AGG 0.541711 8.3:-68944252 None:intergenic
TTTCTGGTTGCAGGTAAACA+TGG 0.542336 8.3:+68946875 MS.gene051029:intron
TTGGTCAACTGAGATGGAGC+TGG 0.544199 8.3:+68948139 MS.gene051029:CDS
AGCTGGAATCGATTCAGAAA+CGG 0.546858 8.3:+68948156 MS.gene051029:CDS
TATCAATGGTATTGTGGCCA+AGG 0.547652 8.3:+68947725 MS.gene051029:CDS
AGGCACAATGGTTGGAGGCA+TGG 0.552115 8.3:+68944600 MS.gene051029:CDS
GATCAATGTAAACATGGAGG+TGG 0.553596 8.3:-68944442 None:intergenic
CACAACCTGAACTCTTTCCA+TGG 0.556620 8.3:-68946980 None:intergenic
AAATTCTCTTTCCAAAGCCA+TGG 0.558733 8.3:+68946963 MS.gene051029:CDS
TGAGTGGAAATATGGGGAAA+AGG 0.559973 8.3:+68944544 MS.gene051029:CDS
ACAAAATTATTGGAACAGAA+TGG 0.563402 8.3:+68948020 MS.gene051029:CDS
TCGAGCAATACGTCGGAAGT+GGG 0.564902 8.3:-68947813 None:intergenic
CATAGATATTAAAGTAACCA+TGG 0.565495 8.3:-68947236 None:intergenic
GTGCTACATTGCAACGTGCA+AGG 0.565901 8.3:+68944759 MS.gene051029:CDS
GGGCAATAAACCATTTCTTG+AGG 0.565913 8.3:+68947024 MS.gene051029:CDS
GAGGTAATCAGTGGCAGCGA+GGG 0.568956 8.3:-68944408 None:intergenic
TTAGTTGATCTGTCCAGGAG+GGG 0.569329 8.3:+68947621 MS.gene051029:CDS
GAGTGATGAAGATTATTGGA+AGG 0.570538 8.3:-68944196 None:intergenic
TAGCCATGGCCGACTCTTTG+GGG 0.570869 8.3:+68947949 MS.gene051029:CDS
CAAAATGATCAATGTAAACA+TGG 0.571391 8.3:-68944448 None:intergenic
TCGAGAATTGAGACTATCAA+TGG 0.571836 8.3:+68947711 MS.gene051029:CDS
TCTCCCCAAAGAGTCGGCCA+TGG 0.572603 8.3:-68947952 None:intergenic
TGAGACTATCAATGGTATTG+TGG 0.572970 8.3:+68947719 MS.gene051029:CDS
CGTGTCGAAAATTGTAGCCA+TGG 0.573375 8.3:+68947935 MS.gene051029:CDS
AGAGATGCTGGAGTAAACTA+CGG 0.576521 8.3:+68947297 MS.gene051029:CDS
GGCAACGGGAAACGGAGTCG+AGG 0.577073 8.3:-68944379 None:intergenic
TGTTTCAGAGAAGTACGTCC+GGG 0.579351 8.3:+68947420 MS.gene051029:CDS
TGAGTTATCCTGCACTGCTG+TGG 0.583109 8.3:+68948211 MS.gene051029:CDS
GCTTAATTTCAAATCGACAT+CGG 0.585392 8.3:-68944486 None:intergenic
ACATGGCAACAAGTTGCAGT+TGG 0.586027 8.3:+68946892 MS.gene051029:CDS
AGATCAACTAAGGAATCAGA+TGG 0.589175 8.3:-68947609 None:intergenic
TCAGAGAAGTACGTCCGGGA+AGG 0.592231 8.3:+68947424 MS.gene051029:CDS
CATGGAAAGAGTTCAGGTTG+TGG 0.593334 8.3:+68946981 MS.gene051029:CDS
CAGGTTGGTATAAGAAGATG+GGG 0.594384 8.3:+68947172 MS.gene051029:CDS
CTTAGTTGATCTGTCCAGGA+GGG 0.596904 8.3:+68947620 MS.gene051029:CDS
AGTGAGAAAATCTGGACCAA+TGG 0.598068 8.3:+68947909 MS.gene051029:CDS
TGCAGTTGGATGACCAGACA+CGG 0.604167 8.3:+68946906 MS.gene051029:CDS
GGGAGAGAATATGGACACCT+TGG 0.608370 8.3:+68947193 MS.gene051029:CDS
CACAATGGTTGGAGGCATGG+TGG 0.613405 8.3:+68944603 MS.gene051029:CDS
ATGTGGGGTTGCAGGCACAA+TGG 0.613579 8.3:+68944588 MS.gene051029:CDS
GCAATAAACCATTTCTTGAG+GGG 0.614967 8.3:+68947026 MS.gene051029:CDS
ATAGATATTAAAGTAACCAT+GGG 0.616127 8.3:-68947235 None:intergenic
AGGTGGTGCATTATAGAACT+GGG 0.617157 8.3:+68944564 MS.gene051029:CDS
GAGATGCTGGAGTAAACTAC+GGG 0.619627 8.3:+68947298 MS.gene051029:CDS
TGAATAAACTTGATGAACCA+AGG 0.620022 8.3:-68947210 None:intergenic
CAGTGGCAGCGAGGGAACGG+AGG 0.621175 8.3:-68944400 None:intergenic
GCAAACTCATCATCTGAACC+AGG 0.624097 8.3:-68944626 None:intergenic
ACCTGATTCTCAGTTACTAG+AGG 0.633008 8.3:+68947332 MS.gene051029:CDS
TCGACATCGGAATTGTTCAA+CGG 0.633345 8.3:-68944473 None:intergenic
TGTTAGTAAATCTTCTATAG+GGG 0.633783 8.3:+68948100 MS.gene051029:CDS
TCAACTAAGGAATCAGATGG+AGG 0.634530 8.3:-68947606 None:intergenic
CAACTAAGGAATCAGATGGA+GGG 0.635405 8.3:-68947605 None:intergenic
TGGGTTTGAGTGGAAATATG+GGG 0.640050 8.3:+68944538 MS.gene051029:CDS
CTCGCTGCCACTGATTACCT+CGG 0.640328 8.3:+68944410 MS.gene051029:CDS
TCGAAAGTAAGTATAACACA+TGG 0.642011 8.3:+68947769 MS.gene051029:CDS
TACGTCCGGGAAGGTTTGTG+AGG 0.642856 8.3:+68947433 MS.gene051029:CDS
CGAAAGTAAGTATAACACAT+GGG 0.644749 8.3:+68947770 MS.gene051029:CDS
AATTAGAAAAGTGAAATTGG+GGG 0.644930 8.3:-68944336 None:intergenic
ACCAGTTGGTTGGTACGTGG+GGG 0.646304 8.3:+68946939 MS.gene051029:CDS
CGAGGTAATCAGTGGCAGCG+AGG 0.653108 8.3:-68944409 None:intergenic
TCTAGACTCGAGCAATACGT+CGG 0.655138 8.3:-68947820 None:intergenic
GTGGAAATATGGGGAAAAGG+TGG 0.657369 8.3:+68944547 MS.gene051029:CDS
AGAAAAGACTCATCAACCCA+AGG 0.660215 8.3:+68947972 MS.gene051029:CDS
AACGGGAAACGGAGTCGAGG+CGG 0.663653 8.3:-68944376 None:intergenic
GGAGGTGGACGCGATCGCCG+AGG 0.671713 8.3:-68944427 None:intergenic
ATTATAGAACTGGGAATGTG+GGG 0.673105 8.3:+68944573 MS.gene051029:CDS
GCGATCGCCGAGGTAATCAG+TGG 0.675521 8.3:-68944417 None:intergenic
AATGATCAATGTAAACATGG+AGG 0.690634 8.3:-68944445 None:intergenic
CCTTAGTTGATCTGTCCAGG+AGG 0.697637 8.3:+68947619 MS.gene051029:CDS
AGGTTGGTATAAGAAGATGG+GGG 0.761473 8.3:+68947173 MS.gene051029:CDS
GACATCGGAATTGTTCAACG+GGG 0.819216 8.3:-68944471 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAGATTATTGGATAA+AGG + chr8.3:68945301-68945320 MS.gene051029:intron 15.0%
!! ATAAGGAATTATATACTTAT+GGG + chr8.3:68947582-68947601 MS.gene051029:CDS 15.0%
!! ATATAAAAGATCATTAGATA+GGG + chr8.3:68945088-68945107 MS.gene051029:intron 15.0%
!! ATTGTGAATTTCTATTATAA+TGG + chr8.3:68944710-68944729 MS.gene051029:CDS 15.0%
!! GTATATTGTAACAAAATTAT+TGG + chr8.3:68948010-68948029 MS.gene051029:CDS 15.0%
!! TATAAGGAATTATATACTTA+TGG + chr8.3:68947581-68947600 MS.gene051029:CDS 15.0%
!! TATATAAAAGATCATTAGAT+AGG + chr8.3:68945087-68945106 MS.gene051029:intron 15.0%
!! TCAAAATTAATAAAGAGTAA+AGG - chr8.3:68946554-68946573 None:intergenic 15.0%
!! TTAATTAGAAAAGTGAAATT+GGG - chr8.3:68944341-68944360 None:intergenic 15.0%
!! TTTAATTAGAAAAGTGAAAT+TGG - chr8.3:68944342-68944361 None:intergenic 15.0%
!!! TTTTAAAAACACTGTTTTTT+TGG - chr8.3:68946197-68946216 None:intergenic 15.0%
!! AAAATTTCAGAACTACTATT+AGG - chr8.3:68947139-68947158 None:intergenic 20.0%
!! AATTAAGGTTTACTTGAATT+GGG - chr8.3:68944307-68944326 None:intergenic 20.0%
!! AATTAATAAAGAGTAAAGGA+TGG - chr8.3:68946550-68946569 None:intergenic 20.0%
!! ATACATAAGTTAACCAAAAA+TGG - chr8.3:68946769-68946788 None:intergenic 20.0%
!! ATAGATATTAAAGTAACCAT+GGG - chr8.3:68947238-68947257 None:intergenic 20.0%
!! CAAAGTAAACAAAAACAAAA+TGG - chr8.3:68944798-68944817 None:intergenic 20.0%
!! GCATCATTATTCAAAATTAA+TGG - chr8.3:68946669-68946688 None:intergenic 20.0%
!! TAATTAGAAAAGTGAAATTG+GGG - chr8.3:68944340-68944359 None:intergenic 20.0%
!! TACATAAGTTAACCAAAAAT+GGG - chr8.3:68946768-68946787 None:intergenic 20.0%
!! TTACAATATACACAAAACTT+AGG - chr8.3:68948001-68948020 None:intergenic 20.0%
!! TTTAAAAATCCATAATACCA+TGG + chr8.3:68946210-68946229 MS.gene051029:intron 20.0%
!!! AATAATAAATTGACTTTGCA+AGG + chr8.3:68947687-68947706 MS.gene051029:CDS 20.0%
!!! ATCAGGAATTTTATAGAAAA+AGG + chr8.3:68945374-68945393 MS.gene051029:intron 20.0%
!!! TAATTTAAAACGTTTCACAA+GGG + chr8.3:68945718-68945737 MS.gene051029:intron 20.0%
! AATTAGAAAAGTGAAATTGG+GGG - chr8.3:68944339-68944358 None:intergenic 25.0%
! ACAAAATTATTGGAACAGAA+TGG + chr8.3:68948020-68948039 MS.gene051029:CDS 25.0%
! ACATAAGTTAACCAAAAATG+GGG - chr8.3:68946767-68946786 None:intergenic 25.0%
! ATAGAATAGAAATAGGTGTA+AGG + chr8.3:68945538-68945557 MS.gene051029:intron 25.0%
! ATTAAGGTTTACTTGAATTG+GGG - chr8.3:68944306-68944325 None:intergenic 25.0%
! ATTTCTGTACAGTTTATTGA+TGG + chr8.3:68946843-68946862 MS.gene051029:intron 25.0%
! CAAAATGATCAATGTAAACA+TGG - chr8.3:68944451-68944470 None:intergenic 25.0%
! CATAGATATTAAAGTAACCA+TGG - chr8.3:68947239-68947258 None:intergenic 25.0%
! GAATTAAGGTTTACTTGAAT+TGG - chr8.3:68944308-68944327 None:intergenic 25.0%
! GTGATTTATAGGTATAATAC+AGG + chr8.3:68944864-68944883 MS.gene051029:intron 25.0%
! GTGTTAGTAAATCTTCTATA+GGG + chr8.3:68948099-68948118 MS.gene051029:CDS 25.0%
! TAGAATAGAAATAGGTGTAA+GGG + chr8.3:68945539-68945558 MS.gene051029:intron 25.0%
! TGAGAAGATAGAATAGAAAT+AGG + chr8.3:68945531-68945550 MS.gene051029:intron 25.0%
! TGTTAGTAAATCTTCTATAG+GGG + chr8.3:68948100-68948119 MS.gene051029:CDS 25.0%
! TTCCAAAATATTGAAGTCTA+GGG - chr8.3:68947364-68947383 None:intergenic 25.0%
! TTTCCAAAATATTGAAGTCT+AGG - chr8.3:68947365-68947384 None:intergenic 25.0%
!! AACCATTTTAAACTACTCAA+AGG - chr8.3:68947393-68947412 None:intergenic 25.0%
!! AATTATAGTCCTTCCATTTT+TGG + chr8.3:68944737-68944756 MS.gene051029:CDS 25.0%
!! AGAATTTTGGATTTTGTTGA+TGG + chr8.3:68944518-68944537 MS.gene051029:CDS 25.0%
!! ATCTTCTTAGTAGATCTTTT+AGG + chr8.3:68947507-68947526 MS.gene051029:CDS 25.0%
!! CAGTTTATTGATGGTATAAT+TGG + chr8.3:68946852-68946871 MS.gene051029:intron 25.0%
!! CTAATTTAAAACGTTTCACA+AGG + chr8.3:68945717-68945736 MS.gene051029:intron 25.0%
!! GAATTTTGGATTTTGTTGAT+GGG + chr8.3:68944519-68944538 MS.gene051029:CDS 25.0%
!! GCTAAACTTTTATTAATACG+CGG + chr8.3:68946113-68946132 MS.gene051029:intron 25.0%
!! GTTTTTACACTGTGATTTAT+AGG + chr8.3:68944853-68944872 MS.gene051029:intron 25.0%
!! TCTTCTTAGTAGATCTTTTA+GGG + chr8.3:68947508-68947527 MS.gene051029:CDS 25.0%
!!! AAAACCAAGGCTTTTTTATA+AGG - chr8.3:68945040-68945059 None:intergenic 25.0%
!!! AAACCAAGGCTTTTTTATAA+GGG - chr8.3:68945039-68945058 None:intergenic 25.0%
!!! CTTGTGAAACGTTTTAAATT+AGG - chr8.3:68945719-68945738 None:intergenic 25.0%
!!! CTTTTTAATTACATAAGCCT+TGG - chr8.3:68947745-68947764 None:intergenic 25.0%
!!! GTAGTTCTGAAATTTTTTAC+AGG + chr8.3:68947143-68947162 MS.gene051029:intron 25.0%
!!! GTTGTCTACAATTTTTTACT+AGG + chr8.3:68945323-68945342 MS.gene051029:intron 25.0%
!!! TACAATTTTTTACTAGGAGT+GGG + chr8.3:68945329-68945348 MS.gene051029:intron 25.0%
!!! TATAAAAAAGCCTTGGTTTT+AGG + chr8.3:68945040-68945059 MS.gene051029:intron 25.0%
AAAAGGGTTCAAAAGTTACA+TGG - chr8.3:68946691-68946710 None:intergenic 30.0%
AACAAAAACAAAATGGTACC+TGG - chr8.3:68944791-68944810 None:intergenic 30.0%
AAGTAAAGTTCCAAGTTCTT+CGG - chr8.3:68947463-68947482 None:intergenic 30.0%
AATGATCAATGTAAACATGG+AGG - chr8.3:68944448-68944467 None:intergenic 30.0%
AATTATCTCTTTGGTCTGTT+GGG - chr8.3:68946453-68946472 None:intergenic 30.0%
AATTCTGCTAATGATATCTG+GGG + chr8.3:68945676-68945695 MS.gene051029:intron 30.0%
ACTTATTATGCAACTTTGAG+AGG + chr8.3:68947553-68947572 MS.gene051029:CDS 30.0%
AGCCTTTGAGTAGTTTAAAA+TGG + chr8.3:68947388-68947407 MS.gene051029:CDS 30.0%
ATAATGTATGCTTAGCATGT+TGG + chr8.3:68945591-68945610 MS.gene051029:intron 30.0%
ATCAAGTTTATTCAATCCCA+TGG + chr8.3:68947219-68947238 MS.gene051029:CDS 30.0%
ATGAGAGTGATGAAGATTAT+TGG - chr8.3:68944203-68944222 None:intergenic 30.0%
ATTACTTGAACCTAAAACCA+AGG - chr8.3:68945053-68945072 None:intergenic 30.0%
CAATTCTGCTAATGATATCT+GGG + chr8.3:68945675-68945694 MS.gene051029:intron 30.0%
CCAATAACCAATCTCTTTAT+TGG - chr8.3:68945254-68945273 None:intergenic 30.0%
CGAAAGTAAGTATAACACAT+GGG + chr8.3:68947770-68947789 MS.gene051029:CDS 30.0%
GAAGTATAGCACAATTAGAA+AGG - chr8.3:68946808-68946827 None:intergenic 30.0%
GATTGACAATCATAACAACA+AGG - chr8.3:68945881-68945900 None:intergenic 30.0%
GCTTAATTTCAAATCGACAT+CGG - chr8.3:68944489-68944508 None:intergenic 30.0%
GGTGTTAGTAAATCTTCTAT+AGG + chr8.3:68948098-68948117 MS.gene051029:CDS 30.0%
GTTGGGTTTAATTATCTCTT+TGG - chr8.3:68946462-68946481 None:intergenic 30.0%
TAATAAAGAGTAAAGGATGG+TGG - chr8.3:68946547-68946566 None:intergenic 30.0%
TAATTATCTCTTTGGTCTGT+TGG - chr8.3:68946454-68946473 None:intergenic 30.0%
TATGACAAAAACAAGGCAAA+GGG + chr8.3:68947004-68947023 MS.gene051029:CDS 30.0%
TCAATTCTGCTAATGATATC+TGG + chr8.3:68945674-68945693 MS.gene051029:intron 30.0%
TCAGTTTATTCTTCGATATC+AGG + chr8.3:68945357-68945376 MS.gene051029:intron 30.0%
TCGAAAGTAAGTATAACACA+TGG + chr8.3:68947769-68947788 MS.gene051029:CDS 30.0%
TGAATAAACTTGATGAACCA+AGG - chr8.3:68947213-68947232 None:intergenic 30.0%
TGTGAAATTAGGGTTAGATT+CGG - chr8.3:68944276-68944295 None:intergenic 30.0%
TTCAAAAACCAGACAAACAA+TGG - chr8.3:68945617-68945636 None:intergenic 30.0%
TTCCAATGCTAGTTACAAAT+TGG - chr8.3:68947668-68947687 None:intergenic 30.0%
! AATTGGTCTACATTGATTAC+AGG - chr8.3:68947651-68947670 None:intergenic 30.0%
! ACTTCTTTTGGCATGAATAT+TGG + chr8.3:68948068-68948087 MS.gene051029:CDS 30.0%
! ACTTTGAGAGGCTAAATATA+AGG + chr8.3:68947565-68947584 MS.gene051029:CDS 30.0%
! ATCCCTAGACTTCAATATTT+TGG + chr8.3:68947359-68947378 MS.gene051029:CDS 30.0%
! CCAATAAAGAGATTGGTTAT+TGG + chr8.3:68945251-68945270 MS.gene051029:intron 30.0%
! CTTCTTAGTAGATCTTTTAG+GGG + chr8.3:68947509-68947528 MS.gene051029:CDS 30.0%
! TAAGTATAACACATGGGTTT+TGG + chr8.3:68947776-68947795 MS.gene051029:CDS 30.0%
! TTACGTTTTCTTGTGTACTA+AGG + chr8.3:68946612-68946631 MS.gene051029:intron 30.0%
! TTGATGGTATAATTGGTTTC+TGG + chr8.3:68946859-68946878 MS.gene051029:intron 30.0%
!! ATGAAGTAGACTTGTTACAA+TGG + chr8.3:68944825-68944844 MS.gene051029:intron 30.0%
!! GGGATTTTAGTGTGAAATTA+GGG - chr8.3:68944286-68944305 None:intergenic 30.0%
!! TTTTGTTGTAGAGGATGATT+TGG + chr8.3:68944649-68944668 MS.gene051029:CDS 30.0%
!!! AATTTTTTACAGGTGACTAC+AGG + chr8.3:68947153-68947172 MS.gene051029:intron 30.0%
!!! ATTGTTTGTCTGGTTTTTGA+AGG + chr8.3:68945616-68945635 MS.gene051029:intron 30.0%
!!! CTACAATTTTTTACTAGGAG+TGG + chr8.3:68945328-68945347 MS.gene051029:intron 30.0%
!!! TTGTTTGTCTGGTTTTTGAA+GGG + chr8.3:68945617-68945636 MS.gene051029:intron 30.0%
AAATTCTCTTTCCAAAGCCA+TGG + chr8.3:68946963-68946982 MS.gene051029:CDS 35.0%
AAGTTTCAGCTCATTAGAGT+TGG - chr8.3:68946480-68946499 None:intergenic 35.0%
AATGTAGCACCAAAAATGGA+AGG - chr8.3:68944749-68944768 None:intergenic 35.0%
ACCAAAAATGGGGTTAAACT+TGG - chr8.3:68946757-68946776 None:intergenic 35.0%
AGATCAACTAAGGAATCAGA+TGG - chr8.3:68947612-68947631 None:intergenic 35.0%
AGTTTCAGCTCATTAGAGTT+GGG - chr8.3:68946479-68946498 None:intergenic 35.0%
ATGGGTTTGAGTGGAAATAT+GGG + chr8.3:68944537-68944556 MS.gene051029:CDS 35.0%
ATTATAGAACTGGGAATGTG+GGG + chr8.3:68944573-68944592 MS.gene051029:CDS 35.0%
CATTATAGAACTGGGAATGT+GGG + chr8.3:68944572-68944591 MS.gene051029:CDS 35.0%
CTCTATTTGAGAGTTTGTAG+GGG + chr8.3:68945168-68945187 MS.gene051029:intron 35.0%
GACCAATTTGTAACTAGCAT+TGG + chr8.3:68947663-68947682 MS.gene051029:CDS 35.0%
GAGTGATGAAGATTATTGGA+AGG - chr8.3:68944199-68944218 None:intergenic 35.0%
GCAATAAACCATTTCTTGAG+GGG + chr8.3:68947026-68947045 MS.gene051029:CDS 35.0%
GCTCTATTTGAGAGTTTGTA+GGG + chr8.3:68945167-68945186 MS.gene051029:intron 35.0%
GGCAATAAACCATTTCTTGA+GGG + chr8.3:68947025-68947044 MS.gene051029:CDS 35.0%
GTACACTCCAATAAAGAGAT+TGG + chr8.3:68945244-68945263 MS.gene051029:intron 35.0%
GTATGACAAAAACAAGGCAA+AGG + chr8.3:68947003-68947022 MS.gene051029:CDS 35.0%
GTCTTAAAACTCGTGAATCT+AGG - chr8.3:68946014-68946033 None:intergenic 35.0%
GTTAGCTATCAACAAACAAG+CGG - chr8.3:68945430-68945449 None:intergenic 35.0%
GTTGTGGTATGACAAAAACA+AGG + chr8.3:68946997-68947016 MS.gene051029:CDS 35.0%
TCAATGGACAGTAGAATACA+GGG + chr8.3:68945838-68945857 MS.gene051029:intron 35.0%
TCCATAATACCATGGATGAA+TGG + chr8.3:68946218-68946237 MS.gene051029:intron 35.0%
TCGAGAATTGAGACTATCAA+TGG + chr8.3:68947711-68947730 MS.gene051029:CDS 35.0%
TGAGACTATCAATGGTATTG+TGG + chr8.3:68947719-68947738 MS.gene051029:CDS 35.0%
TGGGGGAAATTGTTGAATTA+AGG - chr8.3:68944322-68944341 None:intergenic 35.0%
TTAAAACGTTTCACAAGGGT+TGG + chr8.3:68945722-68945741 MS.gene051029:intron 35.0%
TTCAATGGACAGTAGAATAC+AGG + chr8.3:68945837-68945856 MS.gene051029:intron 35.0%
TTCTATAGGGGATAGAAAGT+TGG + chr8.3:68948112-68948131 MS.gene051029:CDS 35.0%
TTGCAATGTAGCACCAAAAA+TGG - chr8.3:68944753-68944772 None:intergenic 35.0%
! AAGCGAATCACGTAGAATTT+TGG + chr8.3:68944505-68944524 MS.gene051029:CDS 35.0%
! ACCAAGTTTAACCCCATTTT+TGG + chr8.3:68946753-68946772 MS.gene051029:intron 35.0%
! AGTTGATGTTTATTGCACCA+CGG - chr8.3:68946251-68946270 None:intergenic 35.0%
! TCTTTTGTAGGACAAGAACT+TGG + chr8.3:68945795-68945814 MS.gene051029:intron 35.0%
! TTATCATTTTAGGCATGTGC+AGG - chr8.3:68946072-68946091 None:intergenic 35.0%
!! ACAGGTTGGTATAAGAAGAT+GGG + chr8.3:68947171-68947190 MS.gene051029:CDS 35.0%
!! ACAGGTTTGTTCATGTTTTC+TGG - chr8.3:68946400-68946419 None:intergenic 35.0%
!! AGTAGACTTGTTACAATGGT+TGG + chr8.3:68944829-68944848 MS.gene051029:intron 35.0%
!! GGGATAGAAAGTTGGTATAT+TGG + chr8.3:68948120-68948139 MS.gene051029:CDS 35.0%
!! GGGGATTTTAGTGTGAAATT+AGG - chr8.3:68944287-68944306 None:intergenic 35.0%
!! TACAGGTTGGTATAAGAAGA+TGG + chr8.3:68947170-68947189 MS.gene051029:CDS 35.0%
!! TAGATTCGGTGATTGAAGAT+GGG - chr8.3:68944262-68944281 None:intergenic 35.0%
!! TATAATTGGTTTCTGGTTGC+AGG + chr8.3:68946866-68946885 MS.gene051029:intron 35.0%
!! TGAGTTTGCTTTTGTTGTAG+AGG + chr8.3:68944640-68944659 MS.gene051029:CDS 35.0%
!! TGCATTGATGAGTCTTTTGT+AGG + chr8.3:68945783-68945802 MS.gene051029:intron 35.0%
!! TGTTTGTTGATAGCTAACAG+AGG + chr8.3:68945432-68945451 MS.gene051029:intron 35.0%
!! TTAGATTCGGTGATTGAAGA+TGG - chr8.3:68944263-68944282 None:intergenic 35.0%
!! TTTCAAGTTGCAAGAACAAC+AGG - chr8.3:68946418-68946437 None:intergenic 35.0%
!!! AGAGTTGATGAGACTTCTTT+TGG + chr8.3:68948056-68948075 MS.gene051029:CDS 35.0%
!!! ATAACACATGGGTTTTGGAT+GGG + chr8.3:68947781-68947800 MS.gene051029:CDS 35.0%
!!! ATTGGAAGGAAGTGCTTTTT+GGG - chr8.3:68944185-68944204 None:intergenic 35.0%
!!! ATTTTGTTGATGGGTTTGAG+TGG + chr8.3:68944528-68944547 MS.gene051029:CDS 35.0%
!!! TATAACACATGGGTTTTGGA+TGG + chr8.3:68947780-68947799 MS.gene051029:CDS 35.0%
!!! TATTGGAAGGAAGTGCTTTT+TGG - chr8.3:68944186-68944205 None:intergenic 35.0%
!!! TTGAACCCTTTTTTGTGCTA+TGG + chr8.3:68946699-68946718 MS.gene051029:intron 35.0%
AAGGTGGTGCATTATAGAAC+TGG + chr8.3:68944563-68944582 MS.gene051029:CDS 40.0%
AATACCATGGATGAATGGCA+AGG + chr8.3:68946223-68946242 MS.gene051029:intron 40.0%
ACACAAAACTTAGGCTACCT+TGG - chr8.3:68947992-68948011 None:intergenic 40.0%
ACCTGACCATAGCACAAAAA+AGG - chr8.3:68946708-68946727 None:intergenic 40.0%
ACCTGATTCTCAGTTACTAG+AGG + chr8.3:68947332-68947351 MS.gene051029:CDS 40.0%
AGAAAAGACTCATCAACCCA+AGG + chr8.3:68947972-68947991 MS.gene051029:CDS 40.0%
AGAGATGCTGGAGTAAACTA+CGG + chr8.3:68947297-68947316 MS.gene051029:CDS 40.0%
AGAGCCTAAAATTCCTGACA+CGG - chr8.3:68945152-68945171 None:intergenic 40.0%
AGGTGGTGCATTATAGAACT+GGG + chr8.3:68944564-68944583 MS.gene051029:CDS 40.0%
AGTGAGAAAATCTGGACCAA+TGG + chr8.3:68947909-68947928 MS.gene051029:CDS 40.0%
AGTGAGTACTTCATGGATGA+GGG + chr8.3:68945478-68945497 MS.gene051029:intron 40.0%
ATGAGAAGCCAGTGTTTCAA+TGG + chr8.3:68945822-68945841 MS.gene051029:intron 40.0%
ATTACCATCCCCTCAAGAAA+TGG - chr8.3:68947037-68947056 None:intergenic 40.0%
ATTCCTTAGTTGATCTGTCC+AGG + chr8.3:68947616-68947635 MS.gene051029:CDS 40.0%
ATTTGAGAGTTTGTAGGGGA+GGG + chr8.3:68945172-68945191 MS.gene051029:intron 40.0%
CAACTAAGGAATCAGATGGA+GGG - chr8.3:68947608-68947627 None:intergenic 40.0%
CACAAAACTTAGGCTACCTT+GGG - chr8.3:68947991-68948010 None:intergenic 40.0%
CATCGTCTAGTGAGAAAATC+TGG + chr8.3:68947901-68947920 MS.gene051029:CDS 40.0%
CATTTACCTCCTTTGCGTAT+GGG - chr8.3:68946325-68946344 None:intergenic 40.0%
CCTGACCATAGCACAAAAAA+GGG - chr8.3:68946707-68946726 None:intergenic 40.0%
CTTCTGTGTTGCAAAAAACG+TGG + chr8.3:68947857-68947876 MS.gene051029:CDS 40.0%
GAGTCTATGTGAGTTTAGCT+AGG - chr8.3:68945984-68946003 None:intergenic 40.0%
GATCAATGTAAACATGGAGG+TGG - chr8.3:68944445-68944464 None:intergenic 40.0%
GCATTATAGAACTGGGAATG+TGG + chr8.3:68944571-68944590 MS.gene051029:CDS 40.0%
GCCATTCATCCATGGTATTA+TGG - chr8.3:68946222-68946241 None:intergenic 40.0%
GGACCCTTATAAAAAAGCCT+TGG + chr8.3:68945033-68945052 MS.gene051029:intron 40.0%
GGCTCAAAGAGTTGAATTTG+TGG + chr8.3:68948177-68948196 MS.gene051029:CDS 40.0%
GGCTCTATTTGAGAGTTTGT+AGG + chr8.3:68945166-68945185 MS.gene051029:intron 40.0%
GGGCAATAAACCATTTCTTG+AGG + chr8.3:68947024-68947043 MS.gene051029:CDS 40.0%
GGTATATTGGTCAACTGAGA+TGG + chr8.3:68948133-68948152 MS.gene051029:CDS 40.0%
GGTTTGACGTTGGATGAATT+TGG + chr8.3:68945453-68945472 MS.gene051029:intron 40.0%
GTCCTACAAGTCTACAATCT+AGG + chr8.3:68945918-68945937 MS.gene051029:intron 40.0%
TAAACCATTTCTTGAGGGGA+TGG + chr8.3:68947030-68947049 MS.gene051029:CDS 40.0%
TACCTTGTACAAGACGAACA+AGG + chr8.3:68946137-68946156 MS.gene051029:intron 40.0%
TAGATAGGGATGTCTACAAC+AGG + chr8.3:68945102-68945121 MS.gene051029:intron 40.0%
TATCAATGGTATTGTGGCCA+AGG + chr8.3:68947725-68947744 MS.gene051029:CDS 40.0%
TATTTGAGAGTTTGTAGGGG+AGG + chr8.3:68945171-68945190 MS.gene051029:intron 40.0%
TCAACTAAGGAATCAGATGG+AGG - chr8.3:68947609-68947628 None:intergenic 40.0%
TCATTTACCTCCTTTGCGTA+TGG - chr8.3:68946326-68946345 None:intergenic 40.0%
TCCTCTAGTAACTGAGAATC+AGG - chr8.3:68947336-68947355 None:intergenic 40.0%
TCGACATCGGAATTGTTCAA+CGG - chr8.3:68944476-68944495 None:intergenic 40.0%
TCTACTGTCCATTGAAACAC+TGG - chr8.3:68945833-68945852 None:intergenic 40.0%
TGAGTGGAAATATGGGGAAA+AGG + chr8.3:68944544-68944563 MS.gene051029:CDS 40.0%
TGCCTAGATTGTAGACTTGT+AGG - chr8.3:68945923-68945942 None:intergenic 40.0%
TGCTCTCTCGTGCAAAAAAT+TGG - chr8.3:68947262-68947281 None:intergenic 40.0%
TGGGTTTGAGTGGAAATATG+GGG + chr8.3:68944538-68944557 MS.gene051029:CDS 40.0%
TGTGATTGAGACTGCATCAT+CGG - chr8.3:68944948-68944967 None:intergenic 40.0%
TTATGTGAACCCATACGCAA+AGG + chr8.3:68946313-68946332 MS.gene051029:intron 40.0%
TTGCGTATGGGTTCACATAA+AGG - chr8.3:68946313-68946332 None:intergenic 40.0%
TTTGGTCAGTGAGTACTTCA+TGG + chr8.3:68945471-68945490 MS.gene051029:intron 40.0%
! AAAGGCGTAAGATGCATCTA+TGG - chr8.3:68946295-68946314 None:intergenic 40.0%
! AATTTTCGACACGAAGCCAT+TGG - chr8.3:68947928-68947947 None:intergenic 40.0%
! CTTTTCTTGTACCAGTTGGT+TGG + chr8.3:68946929-68946948 MS.gene051029:CDS 40.0%
! GATGGGTTTGAGTGGAAATA+TGG + chr8.3:68944536-68944555 MS.gene051029:CDS 40.0%
! TGCTAATGATATCTGGGGTA+AGG + chr8.3:68945681-68945700 MS.gene051029:intron 40.0%
! TGTTGTAGAGGATGATTTGG+AGG + chr8.3:68944652-68944671 MS.gene051029:CDS 40.0%
! TTGTTTCAGAGAAGTACGTC+CGG + chr8.3:68947419-68947438 MS.gene051029:CDS 40.0%
! TTTTACAGGTGACTACAGGT+TGG + chr8.3:68947157-68947176 MS.gene051029:intron 40.0%
!! AGAGTAAAGGATGGTGGAAT+AGG - chr8.3:68946541-68946560 None:intergenic 40.0%
!! AGGTTGGTATAAGAAGATGG+GGG + chr8.3:68947173-68947192 MS.gene051029:CDS 40.0%
!! CAGGTTGGTATAAGAAGATG+GGG + chr8.3:68947172-68947191 MS.gene051029:CDS 40.0%
!! GGCATGAATATTGGTTCAGA+TGG + chr8.3:68948077-68948096 MS.gene051029:CDS 40.0%
!! TTCGTGACTTGGTTTGTCTT+AGG - chr8.3:68946377-68946396 None:intergenic 40.0%
!! TTTCTGGTTGCAGGTAAACA+TGG + chr8.3:68946875-68946894 MS.gene051029:intron 40.0%
!!! ATGTTTTCTGGTTCGTGACT+TGG - chr8.3:68946388-68946407 None:intergenic 40.0%
ACATGGCAACAAGTTGCAGT+TGG + chr8.3:68946892-68946911 MS.gene051029:CDS 45.0%
AGAAGATGGGGGAGAGAATA+TGG + chr8.3:68947184-68947203 MS.gene051029:CDS 45.0%
AGCTAACAGAGGTTTGACGT+TGG + chr8.3:68945443-68945462 MS.gene051029:intron 45.0%
AGCTGAATCCAGCTCCAATA+AGG + chr8.3:68946510-68946529 MS.gene051029:intron 45.0%
CAAAGCCATGGAAAGAGTTC+AGG + chr8.3:68946975-68946994 MS.gene051029:CDS 45.0%
CACAACCTGAACTCTTTCCA+TGG - chr8.3:68946983-68947002 None:intergenic 45.0%
CAGTGAGTACTTCATGGATG+AGG + chr8.3:68945477-68945496 MS.gene051029:intron 45.0%
CATGTTGGCCATTGTTTGTC+TGG + chr8.3:68945606-68945625 MS.gene051029:intron 45.0%
CGACATCGGAATTGTTCAAC+GGG - chr8.3:68944475-68944494 None:intergenic 45.0%
CGTGTCGAAAATTGTAGCCA+TGG + chr8.3:68947935-68947954 MS.gene051029:CDS 45.0%
CTGAACTCTTTCCATGGCTT+TGG - chr8.3:68946977-68946996 None:intergenic 45.0%
CTGAATCCAGCTCCAATAAG+GGG + chr8.3:68946512-68946531 MS.gene051029:intron 45.0%
CTTAGTTGATCTGTCCAGGA+GGG + chr8.3:68947620-68947639 MS.gene051029:CDS 45.0%
GACATCGGAATTGTTCAACG+GGG - chr8.3:68944474-68944493 None:intergenic 45.0%
GAGATGCTGGAGTAAACTAC+GGG + chr8.3:68947298-68947317 MS.gene051029:CDS 45.0%
GCAAACTCATCATCTGAACC+AGG - chr8.3:68944629-68944648 None:intergenic 45.0%
GCAACACAGAAGTCGTAGTT+GGG - chr8.3:68947849-68947868 None:intergenic 45.0%
GCTGAATCCAGCTCCAATAA+GGG + chr8.3:68946511-68946530 MS.gene051029:intron 45.0%
GGATGTCTACAACAGGAGTT+TGG + chr8.3:68945109-68945128 MS.gene051029:intron 45.0%
GTAAACTACGGGAAAACTGC+TGG + chr8.3:68947309-68947328 MS.gene051029:CDS 45.0%
GTGGAAATATGGGGAAAAGG+TGG + chr8.3:68944547-68944566 MS.gene051029:CDS 45.0%
TCTAGACTCGAGCAATACGT+CGG - chr8.3:68947823-68947842 None:intergenic 45.0%
TGCAACACAGAAGTCGTAGT+TGG - chr8.3:68947850-68947869 None:intergenic 45.0%
TGGAATAGGTCTCCCCTTAT+TGG - chr8.3:68946527-68946546 None:intergenic 45.0%
TGGTCGAATAGCGACAAAAG+TGG + chr8.3:68946729-68946748 MS.gene051029:intron 45.0%
TTAGTTGATCTGTCCAGGAG+GGG + chr8.3:68947621-68947640 MS.gene051029:CDS 45.0%
TTTGAGAGTTTGTAGGGGAG+GGG + chr8.3:68945173-68945192 MS.gene051029:intron 45.0%
! ACGGCTTTTCTTGTACCAGT+TGG + chr8.3:68946925-68946944 MS.gene051029:CDS 45.0%
! GTCTTTTCTCCCCAAAGAGT+CGG - chr8.3:68947961-68947980 None:intergenic 45.0%
! TCCTCCGTGTCAGGAATTTT+AGG + chr8.3:68945145-68945164 MS.gene051029:intron 45.0%
! TGCCTTGTTCGTCTTGTACA+AGG - chr8.3:68946142-68946161 None:intergenic 45.0%
! TGTTTCAGAGAAGTACGTCC+GGG + chr8.3:68947420-68947439 MS.gene051029:CDS 45.0%
! TTTTGTGCTATGGTCAGGTC+TGG + chr8.3:68946709-68946728 MS.gene051029:intron 45.0%
!! CATGGAAAGAGTTCAGGTTG+TGG + chr8.3:68946981-68947000 MS.gene051029:CDS 45.0%
!! TTTGTTGATTCCTCCGTGTC+AGG + chr8.3:68945136-68945155 MS.gene051029:intron 45.0%
!!! CCCTTTTTTGTGCTATGGTC+AGG + chr8.3:68946704-68946723 MS.gene051029:intron 45.0%
!!! AAAAAAAATATTATCATTTT+AGG - chr8.3:68946082-68946101 None:intergenic 5.0%
!!! ATATTTTTTTTTTTTTGAAA+CGG + chr8.3:68946091-68946110 MS.gene051029:intron 5.0%
!!! ATTTTTAAATATAAGATTAT+TGG + chr8.3:68945294-68945313 MS.gene051029:intron 5.0%
!!! TTATTTTTTTCTTTAAAATA+TGG + chr8.3:68945404-68945423 MS.gene051029:intron 5.0%
AGTGTCTCTCACAGAGATGC+TGG + chr8.3:68947285-68947304 MS.gene051029:CDS 50.0%
CCTCCTGGACAGATCAACTA+AGG - chr8.3:68947622-68947641 None:intergenic 50.0%
CCTTAGTTGATCTGTCCAGG+AGG + chr8.3:68947619-68947638 MS.gene051029:CDS 50.0%
GAGTTCCTCACAAACCTTCC+CGG - chr8.3:68947441-68947460 None:intergenic 50.0%
GCCTAAAATTCCTGACACGG+AGG - chr8.3:68945149-68945168 None:intergenic 50.0%
GGGAGAGAATATGGACACCT+TGG + chr8.3:68947193-68947212 MS.gene051029:CDS 50.0%
GGTACAAGAAAAGCCGTGTC+TGG - chr8.3:68946922-68946941 None:intergenic 50.0%
GGTGATTGAAGATGGGAGAG+AGG - chr8.3:68944255-68944274 None:intergenic 50.0%
GGTTTGATCCTCCGTTGTAG+TGG + chr8.3:68945743-68945762 MS.gene051029:intron 50.0%
GGTTTGTCTTAGGAGCCACA+GGG - chr8.3:68946367-68946386 None:intergenic 50.0%
GTCCATAGCTGTGATCTCGA+CGG - chr8.3:68945017-68945036 None:intergenic 50.0%
GTGAGGAACTCCGAAGAACT+TGG + chr8.3:68947450-68947469 MS.gene051029:CDS 50.0%
GTGCTACATTGCAACGTGCA+AGG + chr8.3:68944759-68944778 MS.gene051029:CDS 50.0%
TCGAGCAATACGTCGGAAGT+GGG - chr8.3:68947816-68947835 None:intergenic 50.0%
TGAGTTATCCTGCACTGCTG+TGG + chr8.3:68948211-68948230 MS.gene051029:CDS 50.0%
TGCAGTTGGATGACCAGACA+CGG + chr8.3:68946906-68946925 MS.gene051029:CDS 50.0%
TGTGAACCCATACGCAAAGG+AGG + chr8.3:68946316-68946335 MS.gene051029:intron 50.0%
TTGGTCAACTGAGATGGAGC+TGG + chr8.3:68948139-68948158 MS.gene051029:CDS 50.0%
! CAACGTGCAAGGTTTGTTCC+AGG + chr8.3:68944770-68944789 MS.gene051029:CDS 50.0%
! GTACCAGTTGGTTGGTACGT+GGG + chr8.3:68946937-68946956 MS.gene051029:CDS 50.0%
! TACCAGTTGGTTGGTACGTG+GGG + chr8.3:68946938-68946957 MS.gene051029:CDS 50.0%
! TGGTTTGTCTTAGGAGCCAC+AGG - chr8.3:68946368-68946387 None:intergenic 50.0%
! TGTACCAGTTGGTTGGTACG+TGG + chr8.3:68946936-68946955 MS.gene051029:CDS 50.0%
AACGGAGTCGAGGCGGTTAA+AGG - chr8.3:68944372-68944391 None:intergenic 55.0%
AACTGGGAATGTGGGGTTGC+AGG + chr8.3:68944580-68944599 MS.gene051029:CDS 55.0%
AATCAGTGGCAGCGAGGGAA+CGG - chr8.3:68944406-68944425 None:intergenic 55.0%
ACCTGCCACTGCCACTACAA+CGG - chr8.3:68945757-68945776 None:intergenic 55.0%
AGGCACAATGGTTGGAGGCA+TGG + chr8.3:68944600-68944619 MS.gene051029:CDS 55.0%
AGGTCTCCCCTTATTGGAGC+TGG - chr8.3:68946521-68946540 None:intergenic 55.0%
ATCCTCCGTTGTAGTGGCAG+TGG + chr8.3:68945749-68945768 MS.gene051029:intron 55.0%
ATGTGGGGTTGCAGGCACAA+TGG + chr8.3:68944588-68944607 MS.gene051029:CDS 55.0%
CGTACTGAGTCTCAACCCTG+TGG + chr8.3:68946349-68946368 MS.gene051029:intron 55.0%
CTCGAGCAATACGTCGGAAG+TGG - chr8.3:68947817-68947836 None:intergenic 55.0%
GAGGTAATCAGTGGCAGCGA+GGG - chr8.3:68944411-68944430 None:intergenic 55.0%
GATTACAGGATGTCCCCTCC+TGG - chr8.3:68947637-68947656 None:intergenic 55.0%
GGAGCCTTGCCATTCATCCA+TGG - chr8.3:68946230-68946249 None:intergenic 55.0%
GTGACAAACCACAGCAGTGC+AGG - chr8.3:68948222-68948241 None:intergenic 55.0%
GTTGCAGGCACAATGGTTGG+AGG + chr8.3:68944595-68944614 MS.gene051029:CDS 55.0%
TACGTCCGGGAAGGTTTGTG+AGG + chr8.3:68947433-68947452 MS.gene051029:CDS 55.0%
TGCCGTCGAGATCACAGCTA+TGG + chr8.3:68945012-68945031 MS.gene051029:intron 55.0%
TTGTAGGGGAGGGGTGGAAA+GGG + chr8.3:68945182-68945201 MS.gene051029:intron 55.0%
TTTGTAGGGGAGGGGTGGAA+AGG + chr8.3:68945181-68945200 MS.gene051029:intron 55.0%
! ACCAGTTGGTTGGTACGTGG+GGG + chr8.3:68946939-68946958 MS.gene051029:CDS 55.0%
! CACAATGGTTGGAGGCATGG+TGG + chr8.3:68944603-68944622 MS.gene051029:CDS 55.0%
! CTCGCTGCCACTGATTACCT+CGG + chr8.3:68944410-68944429 MS.gene051029:CDS 55.0%
! GTAGCCATGGCCGACTCTTT+GGG + chr8.3:68947948-68947967 MS.gene051029:CDS 55.0%
! TAGCCATGGCCGACTCTTTG+GGG + chr8.3:68947949-68947968 MS.gene051029:CDS 55.0%
! TCAGAGAAGTACGTCCGGGA+AGG + chr8.3:68947424-68947443 MS.gene051029:CDS 55.0%
! TGTAGCCATGGCCGACTCTT+TGG + chr8.3:68947947-68947966 MS.gene051029:CDS 55.0%
AACGGGAAACGGAGTCGAGG+CGG - chr8.3:68944379-68944398 None:intergenic 60.0%
CGAGGTAATCAGTGGCAGCG+AGG - chr8.3:68944412-68944431 None:intergenic 60.0%
CTTTGGCGGAAGGCGAAGAG+AGG + chr8.3:68945205-68945224 MS.gene051029:intron 60.0%
GAGAGTTTGTAGGGGAGGGG+TGG + chr8.3:68945176-68945195 MS.gene051029:intron 60.0%
GCGATCGCCGAGGTAATCAG+TGG - chr8.3:68944420-68944439 None:intergenic 60.0%
GGAACGGAGGCAACGGGAAA+CGG - chr8.3:68944390-68944409 None:intergenic 60.0%
GGATGAATGGCAAGGCTCCG+TGG + chr8.3:68946231-68946250 MS.gene051029:intron 60.0%
GGGGTTGCAGGCACAATGGT+TGG + chr8.3:68944592-68944611 MS.gene051029:CDS 60.0%
GTTGTAGTGGCAGTGGCAGG+TGG + chr8.3:68945756-68945775 MS.gene051029:intron 60.0%
TCCGTTGTAGTGGCAGTGGC+AGG + chr8.3:68945753-68945772 MS.gene051029:intron 60.0%
TCTCCCCAAAGAGTCGGCCA+TGG - chr8.3:68947955-68947974 None:intergenic 60.0%
TGCCACTGCCACTACAACGG+AGG - chr8.3:68945754-68945773 None:intergenic 60.0%
! AGGGGTGGAAAGGGCTTTGG+CGG + chr8.3:68945191-68945210 MS.gene051029:intron 60.0%
! GTGGAAAGGGCTTTGGCGGA+AGG + chr8.3:68945195-68945214 MS.gene051029:intron 60.0%
AGCGAGGGAACGGAGGCAAC+GGG - chr8.3:68944396-68944415 None:intergenic 65.0%
CAGCGAGGGAACGGAGGCAA+CGG - chr8.3:68944397-68944416 None:intergenic 65.0%
GCCCCCACGTACCAACCAAC+TGG - chr8.3:68946943-68946962 None:intergenic 65.0%
GGCAACGGGAAACGGAGTCG+AGG - chr8.3:68944382-68944401 None:intergenic 65.0%
GGGAGGGGTGGAAAGGGCTT+TGG + chr8.3:68945188-68945207 MS.gene051029:intron 65.0%
! TGGTTGGAGGCATGGTGGCC+TGG + chr8.3:68944608-68944627 MS.gene051029:CDS 65.0%
CAGTGGCAGCGAGGGAACGG+AGG - chr8.3:68944403-68944422 None:intergenic 70.0%
GGAGGTGGACGCGATCGCCG+AGG - chr8.3:68944430-68944449 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 68944173 68948250 68944173 ID=MS.gene051029
chr8.3 mRNA 68944173 68948250 68944173 ID=MS.gene051029.t1;Parent=MS.gene051029
chr8.3 exon 68944173 68944791 68944173 ID=MS.gene051029.t1.exon1;Parent=MS.gene051029.t1
chr8.3 CDS 68944173 68944791 68944173 ID=cds.MS.gene051029.t1;Parent=MS.gene051029.t1
chr8.3 exon 68946888 68947051 68946888 ID=MS.gene051029.t1.exon2;Parent=MS.gene051029.t1
chr8.3 CDS 68946888 68947051 68946888 ID=cds.MS.gene051029.t1;Parent=MS.gene051029.t1
chr8.3 exon 68947165 68948250 68947165 ID=MS.gene051029.t1.exon3;Parent=MS.gene051029.t1
chr8.3 CDS 68947165 68948250 68947165 ID=cds.MS.gene051029.t1;Parent=MS.gene051029.t1
Gene Sequence

>MS.gene051029

ATGGTGGGACCCAAAAAGCACTTCCTTCCAATAATCTTCATCACTCTCATTGCATTCATCTTCTACACTTTTCACAACTCCTCTCTCCCATCTTCAATCACCGAATCTAACCCTAATTTCACACTAAAATCCCCAATTCAAGTAAACCTTAATTCAACAATTTCCCCCAATTTCACTTTTCTAATTAAAGTTCTCGCCTTTAACCGCCTCGACTCCGTTTCCCGTTGCCTCCGTTCCCTCGCTGCCACTGATTACCTCGGCGATCGCGTCCACCTCCATGTTTACATTGATCATTTTGCCCCGTTGAACAATTCCGATGTCGATTTGAAATTAAGCGAATCACGTAGAATTTTGGATTTTGTTGATGGGTTTGAGTGGAAATATGGGGAAAAGGTGGTGCATTATAGAACTGGGAATGTGGGGTTGCAGGCACAATGGTTGGAGGCATGGTGGCCTGGTTCAGATGATGAGTTTGCTTTTGTTGTAGAGGATGATTTGGAGGTTTCTTCGCTTTATTACGAGTATATTAAAGCGTTGATTGTGAATTTCTATTATAATGGTTCTAATTATAGTCCTTCCATTTTTGGTGCTACATTGCAACGTGCAAGGTTTGTTCCAGGTACCATTTTGTTTTTGTTTACTTTGCTTTAAAATGAAGTAGACTTGTTACAATGGTTGGAGTTTTTACACTGTGATTTATAGGTATAATACAGGCAGTTTTAAGTGTAGTCACGATCATTGTTATTGTAAAGAATTGTATTATTATATTATACCGATGATGCAGTCTCAATCACATTTGTGTTGTATTGTAGTCACTTAGACATAAAAAACAATGTTGTTGCCGTCGAGATCACAGCTATGGACCCTTATAAAAAAGCCTTGGTTTTAGGTTCAAGTAATGCAATCAGTCATTGTATATAAAAGATCATTAGATAGGGATGTCTACAACAGGAGTTTGGCGATTTTGTTGATTCCTCCGTGTCAGGAATTTTAGGCTCTATTTGAGAGTTTGTAGGGGAGGGGTGGAAAGGGCTTTGGCGGAAGGCGAAGAGAGGAAAATAGAGAGAAATCGTACACTCCAATAAAGAGATTGGTTATTGGTTCAAGTCATGCAATCGTTCATTTTTAAATATAAGATTATTGGATAAAGGTTGTCTACAATTTTTTACTAGGAGTGGGACACTTCAGTTTATTCTTCGATATCAGGAATTTTATAGAAAAAGGTTATACTTTATTTTTTTCTTTAAAATATGGCCGCTTGTTTGTTGATAGCTAACAGAGGTTTGACGTTGGATGAATTTGGTCAGTGAGTACTTCATGGATGAGGGTACTGCGTTGTTTGTTGACTGTGCTATTTGTGAGAAGATAGAATAGAAATAGGTGTAAGGGATGTTTGTATTTGTGAGTAAATTGAATGTATAATGTATGCTTAGCATGTTGGCCATTGTTTGTCTGGTTTTTGAAGGGAATTACTTAGCTGCAGTTGTCATATTATTATTTGTCAATTCTGCTAATGATATCTGGGGTAAGGAAGCTGCAAGTTCCTAATTTAAAACGTTTCACAAGGGTTGGTTTGATCCTCCGTTGTAGTGGCAGTGGCAGGTGGATCATGCATTGATGAGTCTTTTGTAGGACAAGAACTTGGTATTATGAGAAGCCAGTGTTTCAATGGACAGTAGAATACAGGGTTCTCTCTCTTAGTCTTCCTTGTTGTTATGATTGTCAATCTCTCAAGTTAACTCAAAGTCCTACAAGTCTACAATCTAGGCATCACAATTAAGTTAACTTGTTTAAAAGTTTTGTGTAAACCTAGCTAAACTCACATAGACTCACTTTGACCTAGATTCACGAGTTTTAAGACGATTGAATGATACTACAGCGTAACAACTATTTTTACCTGCACATGCCTAAAATGATAATATTTTTTTTTTTTTGAAACGGCTAAACTTTTATTAATACGCGGATACCTTGTACAAGACGAACAAGGCATGCAAAGAAAGCACAGAAGAAAGAGCGTACAACCAAAAAAACAGTGTTTTTAAAAATCCATAATACCATGGATGAATGGCAAGGCTCCGTGGTGCAATAAACATCAACTTGACAGTTGTAGAAATTGAATCCATAGATGCATCTTACGCCTTTATGTGAACCCATACGCAAAGGAGGTAAATGATATCGTACTGAGTCTCAACCCTGTGGCTCCTAAGACAAACCAAGTCACGAACCAGAAAACATGAACAAACCTGTTGTTCTTGCAACTTGAAAGCTTGCAATGAACCCAACAGACCAAAGAGATAATTAAACCCAACTCTAATGAGCTGAAACTTTGCTTTACTTAGCTGAATCCAGCTCCAATAAGGGGAGACCTATTCCACCATCCTTTACTCTTTATTAATTTTGAATTTAACATGTTTATCACTTTTGAACTTGTTATGTAACTTACGTTTTCTTGTGTACTAAGGTGTGAATGTATATTGTGATGTGTTAATCTGTCCATTAATTTTGAATAATGATGCCATGTAACTTTTGAACCCTTTTTTGTGCTATGGTCAGGTCTGGTCGAATAGCGACAAAAGTGGCACCAAGTTTAACCCCATTTTTGGTTAACTTATGTATTTATGTGTTATTGTTGCCTTTCTAATTGTGCTATACTTCTTCACTACTTCGTGAATTTCTGTACAGTTTATTGATGGTATAATTGGTTTCTGGTTGCAGGTAAACATGGCAACAAGTTGCAGTTGGATGACCAGACACGGCTTTTCTTGTACCAGTTGGTTGGTACGTGGGGGCAAATTCTCTTTCCAAAGCCATGGAAAGAGTTCAGGTTGTGGTATGACAAAAACAAGGCAAAGGGCAATAAACCATTTCTTGAGGGGATGGTAATAAAACATTTATAAGAAAAAATGTTTCTTGTTCTTTACTCTTCTTCAATTCTCAGATATATGTCAGCAGTACAGTTCATTCCTAATAGTAGTTCTGAAATTTTTTACAGGTGACTACAGGTTGGTATAAGAAGATGGGGGAGAGAATATGGACACCTTGGTTCATCAAGTTTATTCAATCCCATGGTTACTTTAATATCTATGCCAATTTTTTGCACGAGAGAGCATTAAGTGTCTCTCACAGAGATGCTGGAGTAAACTACGGGAAAACTGCTGGACCTGATTCTCAGTTACTAGAGGAAAGATCCCTAGACTTCAATATTTTGGAAATGCAGCCTTTGAGTAGTTTAAAATGGTTTGACTTTTGTTTCAGAGAAGTACGTCCGGGAAGGTTTGTGAGGAACTCCGAAGAACTTGGAACTTTACTTCACTCTATGCAGAAACAAGATAGTATCTTCTTAGTAGATCTTTTAGGGGTATCAGATGCTGTAGTAAGAAACTTATTATGCAACTTTGAGAGGCTAAATATAAGGAATTATATACTTATGGGCCCTCCATCTGATTCCTTAGTTGATCTGTCCAGGAGGGGACATCCTGTAATCAATGTAGACCAATTTGTAACTAGCATTGGAAATAATAAATTGACTTTGCAAGGTTCGAGAATTGAGACTATCAATGGTATTGTGGCCAAGGCTTATGTAATTAAAAAGTTTATCGAAAGTAAGTATAACACATGGGTTTTGGATGGGAGCATGCTTCCCACTTCCGACGTATTGCTCGAGTCTAGAGATCCCAACTACGACTTCTGTGTTGCAAAAAACGTGGAACTGTTTTACGCTGAAAGCTCATCGTCTAGTGAGAAAATCTGGACCAATGGCTTCGTGTCGAAAATTGTAGCCATGGCCGACTCTTTGGGGAGAAAAGACTCATCAACCCAAGGTAGCCTAAGTTTTGTGTATATTGTAACAAAATTATTGGAACAGAATGGTGCAAGTATCAGAAGAGTTGATGAGACTTCTTTTGGCATGAATATTGGTTCAGATGGTGTTAGTAAATCTTCTATAGGGGATAGAAAGTTGGTATATTGGTCAACTGAGATGGAGCTGGAATCGATTCAGAAACGGCTCAAAGAGTTGAATTTGTGGAGTATAGACAGTGAGTTATCCTGCACTGCTGTGGTTTGTCACAAGTCATAG

Protein sequence

>MS.gene051029.t1

MVGPKKHFLPIIFITLIAFIFYTFHNSSLPSSITESNPNFTLKSPIQVNLNSTISPNFTFLIKVLAFNRLDSVSRCLRSLAATDYLGDRVHLHVYIDHFAPLNNSDVDLKLSESRRILDFVDGFEWKYGEKVVHYRTGNVGLQAQWLEAWWPGSDDEFAFVVEDDLEVSSLYYEYIKALIVNFYYNGSNYSPSIFGATLQRARFVPGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDKNKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSHGYFNIYANFLHERALSVSHRDAGVNYGKTAGPDSQLLEERSLDFNILEMQPLSSLKWFDFCFREVRPGRFVRNSEELGTLLHSMQKQDSIFLVDLLGVSDAVVRNLLCNFERLNIRNYILMGPPSDSLVDLSRRGHPVINVDQFVTSIGNNKLTLQGSRIETINGIVAKAYVIKKFIESKYNTWVLDGSMLPTSDVLLESRDPNYDFCVAKNVELFYAESSSSSEKIWTNGFVSKIVAMADSLGRKDSSTQGSLSFVYIVTKLLEQNGASIRRVDETSFGMNIGSDGVSKSSIGDRKLVYWSTEMELESIQKRLKELNLWSIDSELSCTAVVCHKS