AlfalfaGEDB | MS.gene41610

M. sativa cultivar XinJiangDaYe / MS.gene41610

KEGG: K13412
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13499.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41610.t1	XP_003602699.1	94.7	495	26	0	1	495	1	495	2.10E-273	951

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41610.t1	P28583	79.3	483	100	0	13	495	18	500	1.0e-212	740.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41610.t1	G7J2N5	94.7	495	26	0	1	495	1	495	1.5e-273	951.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene41610	0.833773	4.40E-56	-1.69E-46
MS.gene049404	MS.gene41610	0.815253	1.02E-51	-1.69E-46
MS.gene049567	MS.gene41610	0.824584	7.46E-54	-1.69E-46
MS.gene05045	MS.gene41610	0.80503	1.62E-49	-1.69E-46
MS.gene050559	MS.gene41610	0.819726	9.98E-53	-1.69E-46
MS.gene050561	MS.gene41610	0.825223	5.27E-54	-1.69E-46
MS.gene050562	MS.gene41610	0.808592	2.87E-50	-1.69E-46
MS.gene050719	MS.gene41610	0.814129	1.80E-51	-1.69E-46
MS.gene050721	MS.gene41610	0.810211	1.29E-50	-1.69E-46
MS.gene050759	MS.gene41610	0.803374	3.59E-49	-1.69E-46

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene41610.t1	MTR_3g098070	98.586	495	7	0	1	495	1	495	1016
MS.gene41610.t1	MTR_3g098090	89.558	498	49	1	1	495	1	498	912
MS.gene41610.t1	MTR_8g095440	83.065	496	83	1	1	495	1	496	868
MS.gene41610.t1	MTR_1g096490	74.494	494	121	4	1	489	1	494	779
MS.gene41610.t1	MTR_1g041150	71.008	476	135	2	17	489	106	581	718
MS.gene41610.t1	MTR_5g099240	69.815	487	144	2	3	486	69	555	715
MS.gene41610.t1	MTR_5g099240	71.247	473	134	1	16	486	11	483	714
MS.gene41610.t1	MTR_1g054865	69.231	455	140	0	17	471	149	603	681
MS.gene41610.t1	MTR_1g055255	67.505	477	151	1	17	489	112	588	680
MS.gene41610.t1	MTR_3g098070	98.758	322	4	0	1	322	1	322	676

Showing 1 to 10 of 350 entries

Previous1 2 3 4 5…35Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene41610.t1	AT1G35670	75.456	493	116	4	7	495	3	494	776
MS.gene41610.t1	AT4G09570	75.309	486	115	4	8	489	3	487	764
MS.gene41610.t1	AT5G23580	74.948	479	117	1	12	487	5	483	744
MS.gene41610.t1	AT5G04870	70.825	473	138	0	17	489	138	610	718
MS.gene41610.t1	AT3G10660	72.848	453	123	0	17	469	174	626	717
MS.gene41610.t1	AT3G10660	72.848	453	123	0	17	469	174	626	717
MS.gene41610.t1	AT4G35310	69.345	473	143	1	16	486	84	556	702
MS.gene41610.t1	AT4G35310	69.345	473	143	1	16	486	84	556	702
MS.gene41610.t1	AT2G17290	70.085	468	140	0	16	483	72	539	701
MS.gene41610.t1	AT2G17290	70.085	468	140	0	16	483	72	539	701

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Find 108 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGGTCAAGGTCAATT+CGG	0.427354	3.4:+88123918	MS.gene41610:CDS
AAAGAAGGCTTAAAGCGAGT+AGG	0.631853	3.4:+88127583	MS.gene41610:CDS
AAATTTGTCTGAAGATCCCT+TGG	0.506325	3.4:-88125591	None:intergenic
AACACCACCAAAACCCACAT+GGG	0.617156	3.4:+88123845	MS.gene41610:CDS
AACTGGGTCAAGGTCAATTC+GGG	0.383351	3.4:+88123919	MS.gene41610:CDS
AAGAGGATTATGATGATGTT+TGG	0.389948	3.4:+88124021	MS.gene41610:CDS
AAGGTGGGGAATTATTTGAT+AGG	0.483084	3.4:+88124150	MS.gene41610:CDS
AATAACGGGACACTTGACTA+TGG	0.425948	3.4:+88127779	MS.gene41610:CDS
AATAGTCAAGGAAATTGATC+AGG	0.491177	3.4:+88127964	MS.gene41610:CDS
ACATAAGGGAGAACCCATGT+GGG	0.697832	3.4:-88123858	None:intergenic

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACACAATGTAAGAATGTC+AGG	-	chr3.4:88126996-88127015	None:intergenic	30.0%
AAGTTCATCAAATTGATCAC+AGG	-	chr3.4:88126790-88126809	None:intergenic	30.0%
AATAGTCAAGGAAATTGATC+AGG	+	chr3.4:88127964-88127983	MS.gene41610:CDS	30.0%
AATGCAAAGTATAATACCTG+AGG	-	chr3.4:88126705-88126724	None:intergenic	30.0%
AATTGATTATAAATCGGTCC+AGG	+	chr3.4:88124698-88124717	MS.gene41610:intron	30.0%
ACAGTATTAGCAATGAGAAA+AGG	-	chr3.4:88125541-88125560	None:intergenic	30.0%
ACATTGGAAGAGTTAAAAGA+AGG	+	chr3.4:88127568-88127587	MS.gene41610:CDS	30.0%
ACTATGTTTGAACAAGAACA+TGG	+	chr3.4:88124893-88124912	MS.gene41610:intron	30.0%
ATACATCAAATTATCAGCTG+TGG	+	chr3.4:88125470-88125489	MS.gene41610:intron	30.0%
ATATTAATCTTGCATGTGAC+AGG	+	chr3.4:88127745-88127764	MS.gene41610:intron	30.0%

Showing 1 to 10 of 320 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	88123819	88128283	88123819	ID=MS.gene41610
chr3.4	mRNA	88123819	88128283	88123819	ID=MS.gene41610.t1;Parent=MS.gene41610
chr3.4	exon	88123819	88124368	88123819	ID=MS.gene41610.t1.exon1;Parent=MS.gene41610.t1
chr3.4	CDS	88123819	88124368	88123819	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1
chr3.4	exon	88125309	88125452	88125309	ID=MS.gene41610.t1.exon2;Parent=MS.gene41610.t1
chr3.4	CDS	88125309	88125452	88125309	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1
chr3.4	exon	88125584	88125736	88125584	ID=MS.gene41610.t1.exon3;Parent=MS.gene41610.t1
chr3.4	CDS	88125584	88125736	88125584	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1
chr3.4	exon	88125845	88125960	88125845	ID=MS.gene41610.t1.exon4;Parent=MS.gene41610.t1
chr3.4	CDS	88125845	88125960	88125845	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1
chr3.4	exon	88127481	88127648	88127481	ID=MS.gene41610.t1.exon5;Parent=MS.gene41610.t1
chr3.4	CDS	88127481	88127648	88127481	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1
chr3.4	exon	88127767	88127991	88127767	ID=MS.gene41610.t1.exon6;Parent=MS.gene41610.t1
chr3.4	CDS	88127767	88127991	88127767	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1
chr3.4	exon	88128152	88128283	88128152	ID=MS.gene41610.t1.exon7;Parent=MS.gene41610.t1
chr3.4	CDS	88128152	88128283	88128152	ID=cds.MS.gene41610.t1;Parent=MS.gene41610.t1

Gene Sequence

>MS.gene41610

ATGTCGAAATCCAACACCACCAACCCAACACCACCAAAACCCACATGGGTTCTCCCTTATGTAACTGAAAATCTTCGTGAAGTTTACACCTTAGGTAGAAAACTGGGTCAAGGTCAATTCGGGATCACATATCACTGCACACACAACTCAACGGGTAGAACCTATGCTTGCAAATCAATCTCAAAGAAGAAGCTTTTATGCAAAGAGGATTATGATGATGTTTGGAGAGAGATTCAGATAATGCACCATTTGTCTGAAAATCCAAATGTTGTGAGGATCCATGGTACTTATGAGGATGCGTTTTCTGTTCATTTGGTTATGGAGCTTTGTGAAGGTGGGGAATTATTTGATAGGATTGTGCAGAAGGGTCATTATAGTGAGAGACAAGCTGCTAAGTTGATTAGAACTATTGTTGAGGTTGTTGAAGCTTGTCATTCTCTTGGTGTTATGCATAGAGACCTTAAACCTGAGAATTTTTTGTTTGATTCTGTTGATGAAGATGCTCTTCTCAAAACTATTGATTTTGGGTTGTCTGTTTTTTACAAGCCAGGTTTGTATTTTATTTTTTGCTTTCTCTTTTGATCAGATTCAGTGTGATTTGTGAAATGATGAATGGTTTGATAATTTATTGCATCCGGGTCATTGTTCAGATGCGGTGGATTCTTTTATGACGGAGATTTATTGTTCAGAATGAAATGGCTTAGTTGATTTATTTGTGGAACATGATTTCAATCTTGTTGATTTTGGCTGTATGGTTGTGTTTTTGTTTTTAGAGAGAAAGGGATAAGAAGGGGATGCTTTGTTCTGATTCTGATTTCATTGCTCCATTTGCTTGATTCTTTAGTACTTGGAGAGGTTTTTTTTTTTTTTTTTTTTTCCAATTGATTATAAATCGGTCCAGGAAATAGATTGATTTTAGGGAGCAATGTGATCTAGGGAAATATTAAAATCAAAGTTTGTTTTTGGTTGTGTATTGGAATTGAAAAGTTTGAGAAATATGTATATACTAATTGTTATTGCAGGTTAATGGCATGGTTTATTATGGAACCACAAAGAGTATACACACCATTATACACTATGTTTGAACAAGAACATGGGAGAGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTTCAAATTAGGAAAAAATGGAGATGAAGCCAAAAAGGCGATATTTAATGAAAAAAATGAACCGGGTGCTCAATGGGAAAAGTGTTGACTAACCTGATTCTGTCCTCTGCAGGTTTGTACGAAGAAATAAACTTTTGGTGTTCTAAATGCTGGAAAATGACTATGCATTCCTGAGTATAATGTGGAACATTCACATCTAAGTTTTAATAGTTTTAAAAGTTTTTCTTTAACAGTATAATGTGGAATATACAATTTGAATTTCCAGTGTCGTTCATTTCATTCACTACCATATCAATCAGAAATGATTGCATTATTTGTATGCTTAACAAACTGATGTGTTTTTCAGGTGAAATCTTTAGTGATGTTGTTGGAAGCCCATACTATGTTGCGCCAGAGGTCTTGCACAAGCATTATGGACCTGAAGCAGACGTGTGGAGTGCTGGCGTTATTTTGTACATCTTATTAAGCGGGGTGCCTCCGTTTTGGGCCGGTATCTATCTTTCATTTATACATCAAATTATCAGCTGTGGATGCAGGCTGTAGTGTAGGCATGTTACCGTTTTCTTCACCTTCATCCTTTTCTCATTGCTAATACTGTTATGCGAATTTTCCCACCTACAGAGACTGACCAAGGGATCTTCAGACAAATTTTCCAAGGAAAGCTTGATTTCCGGTCTGAGCCATGGCCTGGGATTTCAGACAGTGCCAAGGATCTAATTCGAAAAATGCTTGATAGGAACCCAAAAACAAGATTTACAGCTCACCAAGTGCTCTGTAAGTCTAAAATTTCATATATATCAAGTATCTTCTTCGTACGAATACTAGAAAAATTATCGGAATGGGATTGAAAGCTATGGAACTTAAGTGGTTTTTCTGTGTCAGGTCACCCGTGGATTGTGGATGATAACATTGCACCAGATAAACCTCTTGATTCTGCCGTTTTATCTCGCCTGAAGCAGTTCTCTGCAATGAATAAGCTTAAAAAGTTGGCTTTACGTGTAAGCTTCTGCAAACCTTCTTGATTAGGCTTGATGAAATTAGGCTTAATGAAAGAACAATTTAATATCTTAGTAATACAAGATTGTATCTTTTTAGATTGAAAGAGTAAATTATATGCATTTTAGTACAATTTAGGCTAAACTGATAGCGAACTGTTGCTTTCTATTTAACTGATTGTCTTTATGAATTTTGTGTACATTCTCGTTGGCTAGTCTCGTATAAAGGCTTCTTCATTCTAAAGGTTTGCATGGCAGTATTTTTGTTTGTTTTAACAACAGTGATGCTGGAGCATTTAGATGATTTTTTCTTGGTTTTATGAGCAAGATGCCTAGTTGTCTGAAATTGCTGCAGGGAATATCTTGGTTTGGTACATGATTATTGTTCATGCTTGCACCTTATGCTTTAGATCACAAAAAAGATGACCAACCTATACTCACTTTGTAATGAAAGCAATGTGATAATTATTGTGCATATGTTTTTCATGCATGGACTCCGGTTACACTTCAACTTCATAATATTTGGTGCATCCCATTTATTTAATTATATCCATGGGAACATTGCAAAGTTTGAAGAATTTTTTATTTAATTATATCCATGGGAACATTGCAAAGTTTGAAGAATTTTTTATAGTAAATATGACTAGACTTTGAATGGATATGCTGTATTTTTTAAAGACTAAAACATTGAGTGAGAGATAAACTTTTGCTCTAGTCTTAACCACCCTTATCATCAAGGCAAAACCTCAGGTATTATACTTTGCATTAGAATAACGAAATCTATATCATTGAACAGGACATCACACATTCTGTTCTGCTTTTCTCGACACCTGTGATCAATTTGATGAACTTCATGAATGAGTGCCAATTTTGCTTTTATAATGATTATTTTTATTGTTTCAGAATATCTTTTATATCAATTAATTTTTGTCCTTATGCATCCCATCCTTTTTTGTTGGAATAAAAGAGGGCTGGGAGCCCAAAGAAAGAAAATCAAACAACAATCAATCCTTTTAAGTGTTGAAGTGGACAAAACCTGACATTCTTACATTGTGTTTTATGCATTGGCCTTAAAATCAGAAGAGAAGGCATGCATGGGTTTCACTTCTGAAGGAACTTGAACGTCACGTTCTTGCTATTTTTGGTTGTTGCCTCTAGCAAGGAATACCAGGGTCGGAAGCTAATATGGATATAATGTAAAAAAGTTTCTTCACATTGACATTTGTATTTTTTCTGATTAACTTTACCATTGCTGATTTGCTGTGATAATCTTTCAATTGAATCGACATAAATTAGCAATATTATGAATTTTGGTCACTTTCTTGACAACCTTGACCTGAAGTTCAGGCATTATTACGTCTTAGTTTGTGAATATTGGAATTTTACAAGTTTTTAAGCTTAGACTTACCGTTGCTTGTGTCTAGACCTCTATCAGAGGCACAATGTCCTGACTGAGAAGTTAAAAGGGATTCATTTCATAGTCTTTTGTATGTGAACTTCTTCTTATGTATACTTATTCATAGGTTATTGCGGAGAGGCTTTCTGAGGAAGAAATCGGTGGTTTGAAGGAGTTATTCAGGATGCTTGATGCTGATAATAGTGGAACTATAACATTGGAAGAGTTAAAAGAAGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGTAAGATATATAGTTCGTTATTGTTTTAGGTTTTAATCCAGTTTCTTTACTTGTGATGCTTGCCCAAATTATAAATTTGATAATTGGCCAAGCCTTATATTAATCTTGCATGTGACAGGCAGATATTGATAATAACGGGACACTTGACTATGGCGAATTCATTGCTGCTACTGTGCACTTAAATAAGCTGGAGAGAGAGGAAAATCTGTTGTCGGCATTCTCATACTTTGACAAAGATGGTAGTGGTTACATAACCATTGACGAGATTCAAGCAGCTTGTAAAGAGTTTGGCTTAGATGATATCCACATTGATGAAATAGTCAAGGAAATTGATCAGGATAATGTAAGTAAATTTTTTTTTTTGTTGCTATTAAGAGCTTTCTTGTATAGATCATAAGTTTATGCAAAAGTTGTCTTTGAAGATTATACGCCAACATTATCATTACAGTGTAAACTCATTAGTTGCTAACTTGTTTGTTTTTGATGAAAATTTTGTGTTGCAGGATGGACAGATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGAAATGGTGGGATTGGAAGGAGAACCATGACAAGCACACTTAATTTCAGAGATGCTCTTGGAATCATAGGCAATGGGTCCAATTAA

Protein sequence

>MS.gene41610.t1

MSKSNTTNPTPPKPTWVLPYVTENLREVYTLGRKLGQGQFGITYHCTHNSTGRTYACKSISKKKLLCKEDYDDVWREIQIMHHLSENPNVVRIHGTYEDAFSVHLVMELCEGGELFDRIVQKGHYSERQAAKLIRTIVEVVEACHSLGVMHRDLKPENFLFDSVDEDALLKTIDFGLSVFYKPGEIFSDVVGSPYYVAPEVLHKHYGPEADVWSAGVILYILLSGVPPFWAETDQGIFRQIFQGKLDFRSEPWPGISDSAKDLIRKMLDRNPKTRFTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKLALRVIAERLSEEEIGGLKELFRMLDADNSGTITLEELKEGLKRVGSELMESEIKDLMDAADIDNNGTLDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQAACKEFGLDDIHIDEIVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMTSTLNFRDALGIIGNGSN