Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42661.t1 | RHN70535.1 | 91.4 | 431 | 37 | 0 | 1 | 431 | 1 | 431 | 5.60E-222 | 780 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42661.t1 | A0MFS5 | 36.7 | 362 | 208 | 6 | 17 | 367 | 56 | 407 | 8.1e-52 | 206.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42661.t1 | A0A072V1M6 | 91.4 | 431 | 37 | 0 | 1 | 431 | 1 | 431 | 4.0e-222 | 780.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene42661 | 0.816582 | 5.14E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene42661 | 0.814745 | 1.32E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene42661 | 0.808112 | 3.64E-50 | -1.69E-46 |
| MS.gene049647 | MS.gene42661 | 0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene42661 | 0.80506 | 1.60E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene42661 | 0.821981 | 3.02E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene42661 | 0.826453 | 2.69E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene42661 | 0.825671 | 4.13E-54 | -1.69E-46 |
| MS.gene050657 | MS.gene42661 | 0.820202 | 7.77E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene42661 | 0.811264 | 7.64E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene42661 | 0.801685 | 8.01E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene42661 | 0.827714 | 1.34E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene42661 | 0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene42661 | 0.810156 | 1.33E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene42661 | 0.828618 | 8.13E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene42661 | 0.823472 | 1.36E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene42661 | 0.828781 | 7.43E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene42661 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene42661 | 0.821231 | 4.51E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene42661 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene053599 | MS.gene42661 | 0.816741 | 4.73E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene42661 | 0.822865 | 1.88E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene42661 | 0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene42661 | 0.841761 | 3.91E-58 | -1.69E-46 |
| MS.gene054651 | MS.gene42661 | 0.827046 | 1.94E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene42661 | 0.831407 | 1.70E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene42661 | 0.822215 | 2.67E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene42661 | 0.840912 | 6.53E-58 | -1.69E-46 |
| MS.gene056173 | MS.gene42661 | 0.807585 | 4.70E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene42661 | 0.824938 | 6.15E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene42661 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene42661 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene42661 | 0.804869 | 1.76E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene42661 | 0.826893 | 2.11E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene42661 | 0.801468 | 8.88E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene42661 | 0.803103 | 4.09E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene42661 | 0.806591 | 7.63E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene42661 | 0.803918 | 2.77E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene42661 | 0.806673 | 7.34E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene42661 | 0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene42661 | 0.801714 | 7.91E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42661.t1 | MTR_3g105530 | 97.680 | 431 | 10 | 0 | 1 | 431 | 1 | 431 | 0.0 | 865 |
| MS.gene42661.t1 | MTR_0153s0070 | 89.216 | 408 | 9 | 1 | 24 | 431 | 1 | 373 | 0.0 | 721 |
| MS.gene42661.t1 | MTR_0153s0070 | 97.561 | 328 | 8 | 0 | 1 | 328 | 8 | 335 | 0.0 | 664 |
| MS.gene42661.t1 | MTR_7g117270 | 34.097 | 349 | 207 | 6 | 60 | 401 | 110 | 442 | 5.49e-50 | 177 |
| MS.gene42661.t1 | MTR_6g033595 | 31.714 | 391 | 246 | 8 | 22 | 397 | 34 | 418 | 1.48e-47 | 169 |
| MS.gene42661.t1 | MTR_1g072550 | 33.237 | 346 | 213 | 6 | 40 | 377 | 39 | 374 | 1.72e-45 | 162 |
| MS.gene42661.t1 | MTR_7g088530 | 33.728 | 338 | 197 | 10 | 90 | 422 | 99 | 414 | 1.41e-44 | 160 |
| MS.gene42661.t1 | MTR_1g032040 | 33.140 | 344 | 212 | 6 | 42 | 377 | 41 | 374 | 2.70e-44 | 159 |
| MS.gene42661.t1 | MTR_1g032380 | 33.140 | 344 | 212 | 6 | 42 | 377 | 41 | 374 | 2.70e-44 | 159 |
| MS.gene42661.t1 | MTR_8g089370 | 31.962 | 316 | 202 | 7 | 57 | 367 | 58 | 365 | 7.62e-41 | 150 |
| MS.gene42661.t1 | MTR_2g067960 | 31.728 | 353 | 220 | 8 | 60 | 397 | 37 | 383 | 2.11e-39 | 147 |
| MS.gene42661.t1 | MTR_1g019170 | 31.176 | 340 | 210 | 7 | 25 | 363 | 14 | 330 | 2.05e-38 | 144 |
| MS.gene42661.t1 | MTR_7g107280 | 28.866 | 388 | 236 | 10 | 57 | 424 | 53 | 420 | 2.21e-38 | 144 |
| MS.gene42661.t1 | MTR_3g029990 | 31.765 | 340 | 208 | 8 | 25 | 363 | 14 | 330 | 6.42e-37 | 142 |
| MS.gene42661.t1 | MTR_3g029990 | 31.765 | 340 | 208 | 8 | 25 | 363 | 14 | 330 | 6.43e-37 | 142 |
| MS.gene42661.t1 | MTR_3g074730 | 32.573 | 307 | 192 | 6 | 62 | 363 | 83 | 379 | 1.59e-36 | 138 |
| MS.gene42661.t1 | MTR_1g098960 | 32.776 | 299 | 177 | 8 | 66 | 363 | 57 | 332 | 1.61e-35 | 136 |
| MS.gene42661.t1 | MTR_3g030020 | 33.333 | 282 | 166 | 7 | 83 | 363 | 27 | 287 | 2.39e-35 | 134 |
| MS.gene42661.t1 | MTR_3g083350 | 31.193 | 327 | 188 | 8 | 61 | 367 | 81 | 390 | 3.10e-32 | 129 |
| MS.gene42661.t1 | MTR_6g043850 | 29.178 | 353 | 227 | 9 | 42 | 386 | 36 | 373 | 2.74e-31 | 127 |
| MS.gene42661.t1 | MTR_3g063230 | 27.322 | 366 | 237 | 9 | 22 | 372 | 40 | 391 | 8.25e-30 | 120 |
| MS.gene42661.t1 | MTR_7g018630 | 28.025 | 314 | 215 | 5 | 55 | 367 | 72 | 375 | 5.19e-28 | 115 |
| MS.gene42661.t1 | MTR_4g053720 | 27.826 | 345 | 214 | 7 | 30 | 357 | 18 | 344 | 4.50e-24 | 103 |
| MS.gene42661.t1 | MTR_3g063230 | 27.451 | 357 | 224 | 12 | 22 | 372 | 40 | 367 | 4.30e-23 | 100 |
| MS.gene42661.t1 | MTR_3g448960 | 28.094 | 299 | 166 | 10 | 66 | 363 | 57 | 307 | 4.22e-22 | 98.6 |
| MS.gene42661.t1 | MTR_8g102038 | 31.250 | 192 | 114 | 5 | 115 | 297 | 56 | 238 | 9.07e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42661.t1 | AT5G21970 | 66.410 | 390 | 122 | 5 | 20 | 408 | 39 | 420 | 0.0 | 520 |
| MS.gene42661.t1 | AT5G21970 | 66.410 | 390 | 122 | 5 | 20 | 408 | 39 | 420 | 0.0 | 520 |
| MS.gene42661.t1 | AT4G01037 | 36.504 | 389 | 208 | 9 | 17 | 386 | 56 | 424 | 2.06e-59 | 202 |
| MS.gene42661.t1 | AT3G63090 | 31.443 | 388 | 245 | 8 | 22 | 402 | 29 | 402 | 3.04e-48 | 170 |
| MS.gene42661.t1 | AT4G33495 | 33.509 | 379 | 224 | 11 | 25 | 388 | 38 | 403 | 4.38e-47 | 167 |
| MS.gene42661.t1 | AT5G48040 | 32.295 | 353 | 209 | 8 | 41 | 379 | 44 | 380 | 6.73e-45 | 161 |
| MS.gene42661.t1 | AT1G79120 | 31.653 | 357 | 222 | 6 | 38 | 382 | 64 | 410 | 3.91e-44 | 159 |
| MS.gene42661.t1 | AT1G79120 | 31.653 | 357 | 222 | 6 | 38 | 382 | 64 | 410 | 3.91e-44 | 159 |
| MS.gene42661.t1 | AT2G31290 | 31.285 | 358 | 217 | 7 | 37 | 387 | 29 | 364 | 1.17e-42 | 155 |
| MS.gene42661.t1 | AT2G31290 | 31.285 | 358 | 217 | 7 | 37 | 387 | 29 | 364 | 1.17e-42 | 155 |
| MS.gene42661.t1 | AT4G08940 | 31.833 | 311 | 197 | 6 | 57 | 363 | 83 | 382 | 4.00e-41 | 150 |
| MS.gene42661.t1 | AT5G45790 | 31.148 | 366 | 224 | 9 | 17 | 372 | 48 | 395 | 9.08e-41 | 150 |
| MS.gene42661.t1 | AT5G45790 | 35.739 | 291 | 163 | 7 | 90 | 372 | 36 | 310 | 2.95e-40 | 147 |
| MS.gene42661.t1 | AT5G62990 | 34.848 | 330 | 177 | 9 | 58 | 367 | 81 | 392 | 1.03e-39 | 149 |
| MS.gene42661.t1 | AT3G58520 | 32.523 | 329 | 203 | 8 | 56 | 372 | 55 | 376 | 1.66e-39 | 147 |
| MS.gene42661.t1 | AT1G06440 | 29.211 | 380 | 240 | 8 | 5 | 367 | 3 | 370 | 1.70e-36 | 138 |
| MS.gene42661.t1 | AT3G58520 | 33.793 | 290 | 175 | 7 | 95 | 372 | 80 | 364 | 1.33e-35 | 136 |
| MS.gene42661.t1 | AT1G71850 | 27.157 | 394 | 268 | 7 | 22 | 410 | 17 | 396 | 2.23e-34 | 134 |
| MS.gene42661.t1 | AT4G24320 | 29.110 | 292 | 194 | 6 | 91 | 375 | 78 | 363 | 5.87e-24 | 103 |
| MS.gene42661.t1 | AT2G39120 | 27.707 | 314 | 216 | 6 | 55 | 367 | 52 | 355 | 3.29e-23 | 100 |
Find 77 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAACTGGAATAACCATTTC+TGG | 0.211698 | 3.3:-86697249 | None:intergenic |
| GAAAGGGTGCATAGTTATTA+TGG | 0.236478 | 3.3:+86697783 | MS.gene42661:CDS |
| TCAGAGATTCTGTGAGGTTT+TGG | 0.253264 | 3.3:-86697306 | None:intergenic |
| TGCACCCTTTCAAAATTTAC+AGG | 0.267333 | 3.3:-86697771 | None:intergenic |
| CTTAGTCTTGTTGGCTATAG+AGG | 0.357273 | 3.3:+86698143 | MS.gene42661:CDS |
| GATTCATAGCAATCGATTCA+TGG | 0.376006 | 3.3:+86697064 | MS.gene42661:CDS |
| TTGTTTCTTGGAATTCTGAA+TGG | 0.380201 | 3.3:+86697646 | MS.gene42661:CDS |
| ACAGGAAATTTCAAAGGAAA+TGG | 0.381695 | 3.3:-86697753 | None:intergenic |
| GGATGTGGAGCTTGAGCAAC+AGG | 0.382512 | 3.3:+86698259 | MS.gene42661:CDS |
| AAAATTGCTGTTATTCGCAT+TGG | 0.392112 | 3.3:+86697091 | MS.gene42661:CDS |
| TTCACAAATTCAATGCGGTT+TGG | 0.393479 | 3.3:+86697042 | None:intergenic |
| AGCTCTATAAGGATCGTAAC+GGG | 0.395197 | 3.3:+86697358 | MS.gene42661:CDS |
| GAGAAGCTTCTTAGTCTTGT+TGG | 0.399437 | 3.3:+86698134 | MS.gene42661:CDS |
| AACAGAAGCTTATGATGGTT+CGG | 0.405777 | 3.3:+86698076 | MS.gene42661:CDS |
| AAACCCTTTGCATCAGCATA+AGG | 0.409922 | 3.3:-86697846 | None:intergenic |
| AAGATCGAAGCAAGAAGAAA+AGG | 0.422615 | 3.3:+86697145 | MS.gene42661:CDS |
| AAATTGCTGTTATTCGCATT+GGG | 0.423537 | 3.3:+86697092 | MS.gene42661:CDS |
| ACTCCCAACGGAAGTGAGTT+AGG | 0.429164 | 3.3:-86697962 | None:intergenic |
| AAGCAAACCCGGGGTGTGTT+CGG | 0.431409 | 3.3:-86697724 | None:intergenic |
| AGGATCGTAACGGGGTGTTA+TGG | 0.444477 | 3.3:+86697367 | MS.gene42661:CDS |
| TCTCCTTATGCTGATGCAAA+GGG | 0.446830 | 3.3:+86697843 | MS.gene42661:CDS |
| TCGAAGCAGCAACAGAGAAA+TGG | 0.448143 | 3.3:+86697178 | MS.gene42661:CDS |
| GTTCTTTAGAATTCGATAAG+AGG | 0.449761 | 3.3:+86697877 | MS.gene42661:CDS |
| TGATTCTGATGTGGAGGACT+TGG | 0.465301 | 3.3:+86698238 | MS.gene42661:CDS |
| GATTCTGAGATGGATGTTAG+AGG | 0.467647 | 3.3:+86698317 | MS.gene42661:CDS |
| TCTCGAACAAGAACCAGAAA+TGG | 0.467938 | 3.3:+86697236 | MS.gene42661:CDS |
| TGTTTCTTGGAATTCTGAAT+GGG | 0.470467 | 3.3:+86697647 | MS.gene42661:CDS |
| CTTCTTCTCAATCTCTGTGA+TGG | 0.477726 | 3.3:-86697670 | None:intergenic |
| TAATGTGAAAGAGATCGAAC+TGG | 0.482436 | 3.3:-86697264 | None:intergenic |
| AGATCGAAGCAAGAAGAAAA+GGG | 0.484434 | 3.3:+86697146 | MS.gene42661:CDS |
| GTCTCCTTATGCTGATGCAA+AGG | 0.487202 | 3.3:+86697842 | MS.gene42661:CDS |
| GAATAAGACGATTGTGGAAG+GGG | 0.488073 | 3.3:+86697692 | MS.gene42661:CDS |
| GAAGAAGAATAAGACGATTG+TGG | 0.490121 | 3.3:+86697686 | MS.gene42661:CDS |
| AATGGTAGCGAAAGCAAACC+CGG | 0.509498 | 3.3:-86697735 | None:intergenic |
| AGGAAGGAAGAAGAAGTTTG+AGG | 0.519477 | 3.3:+86698163 | MS.gene42661:CDS |
| TCAGAATCGTCCTCGAGTAA+AGG | 0.523469 | 3.3:-86698302 | None:intergenic |
| AAGAATAAGACGATTGTGGA+AGG | 0.524672 | 3.3:+86697690 | MS.gene42661:CDS |
| TTCTTTAGAATTCGATAAGA+GGG | 0.527132 | 3.3:+86697878 | MS.gene42661:CDS |
| TACTAGGTTGCTTATGATGT+CGG | 0.530829 | 3.3:+86697476 | MS.gene42661:CDS |
| GGTTGATAAACGTGTTCAGT+TGG | 0.531073 | 3.3:+86697497 | MS.gene42661:CDS |
| GATGCAAAGGGTTTGAAACC+TGG | 0.532506 | 3.3:+86697855 | MS.gene42661:CDS |
| AAGCTGCTGAATATGTTACT+AGG | 0.532919 | 3.3:+86697460 | MS.gene42661:CDS |
| CAATGAGTTCTAAAATCCAT+TGG | 0.537215 | 3.3:-86697555 | None:intergenic |
| TCACCTAACTCACTTCCGTT+GGG | 0.539444 | 3.3:+86697959 | MS.gene42661:CDS |
| AGTGATGAGGAAGGCGGTGA+TGG | 0.540545 | 3.3:+86698197 | MS.gene42661:CDS |
| TTTGATGGAAGAACACAAAA+GGG | 0.543427 | 3.3:+86697416 | MS.gene42661:CDS |
| ACAGGATACCTTGGAGTACA+AGG | 0.547237 | 3.3:+86698277 | MS.gene42661:CDS |
| AACTGAAACCGAACACACCC+CGG | 0.548649 | 3.3:+86697716 | MS.gene42661:CDS |
| ATCACCTAACTCACTTCCGT+TGG | 0.553764 | 3.3:+86697958 | MS.gene42661:CDS |
| TTATCGAATTCTAAAGAACC+AGG | 0.555066 | 3.3:-86697873 | None:intergenic |
| ACTGAAACCGAACACACCCC+GGG | 0.560385 | 3.3:+86697717 | MS.gene42661:CDS |
| GTCTTGTTGGCTATAGAGGA+AGG | 0.560921 | 3.3:+86698147 | MS.gene42661:CDS |
| AAATTTACAGGAAATTTCAA+AGG | 0.561249 | 3.3:-86697759 | None:intergenic |
| GCTTGAGCAACAGGATACCT+TGG | 0.563372 | 3.3:+86698268 | MS.gene42661:CDS |
| TGATGTGGAGGACTTGGATG+TGG | 0.571180 | 3.3:+86698244 | MS.gene42661:CDS |
| ATTCTGAGATGGATGTTAGA+GGG | 0.571949 | 3.3:+86698318 | MS.gene42661:CDS |
| AACTCAACATCGTCAAGAGA+AGG | 0.575314 | 3.3:-86697615 | None:intergenic |
| TTATGCCTCAGAAGTTGATG+AGG | 0.583152 | 3.3:+86697988 | MS.gene42661:CDS |
| ACTCGAGGACGATTCTGAGA+TGG | 0.584295 | 3.3:+86698307 | MS.gene42661:CDS |
| AGAATAAGACGATTGTGGAA+GGG | 0.588082 | 3.3:+86697691 | MS.gene42661:CDS |
| GCTTCAGAGTGATTCTGATG+TGG | 0.588652 | 3.3:+86698229 | MS.gene42661:CDS |
| CGTAACGGGGTGTTATGGTG+TGG | 0.588860 | 3.3:+86697372 | MS.gene42661:CDS |
| GGCGGATAGTGATAGTGATG+AGG | 0.590246 | 3.3:+86698184 | MS.gene42661:CDS |
| GAGCTCTATAAGGATCGTAA+CGG | 0.593963 | 3.3:+86697357 | MS.gene42661:CDS |
| TAAAGGATCCTTGTACTCCA+AGG | 0.600584 | 3.3:-86698285 | None:intergenic |
| AAGGAAGAAGAAGTTTGAGG+CGG | 0.603463 | 3.3:+86698166 | MS.gene42661:CDS |
| TCAGAGTGATTCTGATGTGG+AGG | 0.607726 | 3.3:+86698232 | MS.gene42661:CDS |
| AAAAGCCTCATCAACTTCTG+AGG | 0.608858 | 3.3:-86697993 | None:intergenic |
| GTTATTCGCATTGGGAACGA+TGG | 0.640658 | 3.3:+86697100 | MS.gene42661:CDS |
| AGTGATAGTGATGAGGAAGG+CGG | 0.642676 | 3.3:+86698191 | MS.gene42661:CDS |
| GATAGTGATAGTGATGAGGA+AGG | 0.653348 | 3.3:+86698188 | MS.gene42661:CDS |
| GAGGCATAACTAACTCCCAA+CGG | 0.662694 | 3.3:-86697974 | None:intergenic |
| ATGGTAGCGAAAGCAAACCC+GGG | 0.662877 | 3.3:-86697734 | None:intergenic |
| GTACAAGGATCCTTTACTCG+AGG | 0.671532 | 3.3:+86698292 | MS.gene42661:CDS |
| GCTCTATAAGGATCGTAACG+GGG | 0.700866 | 3.3:+86697359 | MS.gene42661:CDS |
| AGAAAATCAGAGATTCTGTG+AGG | 0.714200 | 3.3:-86697312 | None:intergenic |
| TGGTAGCGAAAGCAAACCCG+GGG | 0.722533 | 3.3:-86697733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTACAGGAAATTTCAA+AGG | - | chr3.3:86697762-86697781 | None:intergenic | 20.0% |
| !! | TGAAAAGATAAAAATGTTTC+AGG | + | chr3.3:86697806-86697825 | MS.gene42661:CDS | 20.0% |
| !!! | AATTTCCTGTAAATTTTGAA+AGG | + | chr3.3:86697766-86697785 | MS.gene42661:CDS | 20.0% |
| !!! | ATTTCCTGTAAATTTTGAAA+GGG | + | chr3.3:86697767-86697786 | MS.gene42661:CDS | 20.0% |
| !!! | TATTTTTTATGTTTCTGAGA+GGG | + | chr3.3:86698031-86698050 | MS.gene42661:CDS | 20.0% |
| ! | TATAGAGCTCAAAAAGTTTA+GGG | - | chr3.3:86697347-86697366 | None:intergenic | 25.0% |
| ! | TTATAGAGCTCAAAAAGTTT+AGG | - | chr3.3:86697348-86697367 | None:intergenic | 25.0% |
| !! | TTTTTAACAGAAGCTTATGA+TGG | + | chr3.3:86698071-86698090 | MS.gene42661:CDS | 25.0% |
| !!! | AATGGATTTTAGAACTCATT+GGG | + | chr3.3:86697557-86697576 | MS.gene42661:CDS | 25.0% |
| !!! | AGAAATCTCCTTTGTTTTTA+TGG | + | chr3.3:86698108-86698127 | MS.gene42661:CDS | 25.0% |
| !!! | ATTTTTTATGTTTCTGAGAG+GGG | + | chr3.3:86698032-86698051 | MS.gene42661:CDS | 25.0% |
| !!! | GTATTTTTTATGTTTCTGAG+AGG | + | chr3.3:86698030-86698049 | MS.gene42661:CDS | 25.0% |
| !!! | TAAACTTTTTGAGCTCTATA+AGG | + | chr3.3:86697347-86697366 | MS.gene42661:CDS | 25.0% |
| !!! | TTCTTTAGAATTCGATAAGA+GGG | + | chr3.3:86697878-86697897 | MS.gene42661:CDS | 25.0% |
| ACAGGAAATTTCAAAGGAAA+TGG | - | chr3.3:86697756-86697775 | None:intergenic | 30.0% | |
| AGATAAAAATGTTTCAGGAG+AGG | + | chr3.3:86697811-86697830 | MS.gene42661:CDS | 30.0% | |
| ATAGAGCTCAAAAAGTTTAG+GGG | - | chr3.3:86697346-86697365 | None:intergenic | 30.0% | |
| TGTTTCTTGGAATTCTGAAT+GGG | + | chr3.3:86697647-86697666 | MS.gene42661:CDS | 30.0% | |
| TTTGATGGAAGAACACAAAA+GGG | + | chr3.3:86697416-86697435 | MS.gene42661:CDS | 30.0% | |
| ! | AAAATTGCTGTTATTCGCAT+TGG | + | chr3.3:86697091-86697110 | MS.gene42661:CDS | 30.0% |
| ! | AAATTGCTGTTATTCGCATT+GGG | + | chr3.3:86697092-86697111 | MS.gene42661:CDS | 30.0% |
| ! | TTATCGAATTCTAAAGAACC+AGG | - | chr3.3:86697876-86697895 | None:intergenic | 30.0% |
| ! | TTGTTTCTTGGAATTCTGAA+TGG | + | chr3.3:86697646-86697665 | MS.gene42661:CDS | 30.0% |
| ! | TTTTGATGGAAGAACACAAA+AGG | + | chr3.3:86697415-86697434 | MS.gene42661:CDS | 30.0% |
| !! | CAATGAGTTCTAAAATCCAT+TGG | - | chr3.3:86697558-86697577 | None:intergenic | 30.0% |
| !! | GTTCTTTAGAATTCGATAAG+AGG | + | chr3.3:86697877-86697896 | MS.gene42661:CDS | 30.0% |
| !!! | AATCTCCTTTGTTTTTATGG+AGG | + | chr3.3:86698111-86698130 | MS.gene42661:CDS | 30.0% |
| !!! | ATCTCCTTTGTTTTTATGGA+GGG | + | chr3.3:86698112-86698131 | MS.gene42661:CDS | 30.0% |
| !!! | CAATGGATTTTAGAACTCAT+TGG | + | chr3.3:86697556-86697575 | MS.gene42661:CDS | 30.0% |
| !!! | TTAGTTTTACAGTTGAGAAG+AGG | + | chr3.3:86697925-86697944 | MS.gene42661:CDS | 30.0% |
| !!! | TTTTTTATGTTTCTGAGAGG+GGG | + | chr3.3:86698033-86698052 | MS.gene42661:CDS | 30.0% |
| AACAGAAGCTTATGATGGTT+CGG | + | chr3.3:86698076-86698095 | MS.gene42661:CDS | 35.0% | |
| AAGAATAAGACGATTGTGGA+AGG | + | chr3.3:86697690-86697709 | MS.gene42661:CDS | 35.0% | |
| AAGATCGAAGCAAGAAGAAA+AGG | + | chr3.3:86697145-86697164 | MS.gene42661:CDS | 35.0% | |
| AAGCTGCTGAATATGTTACT+AGG | + | chr3.3:86697460-86697479 | MS.gene42661:CDS | 35.0% | |
| AGAAAATCAGAGATTCTGTG+AGG | - | chr3.3:86697315-86697334 | None:intergenic | 35.0% | |
| AGAATAAGACGATTGTGGAA+GGG | + | chr3.3:86697691-86697710 | MS.gene42661:CDS | 35.0% | |
| AGATCGAAGCAAGAAGAAAA+GGG | + | chr3.3:86697146-86697165 | MS.gene42661:CDS | 35.0% | |
| GAAGAAGAATAAGACGATTG+TGG | + | chr3.3:86697686-86697705 | MS.gene42661:CDS | 35.0% | |
| TAATGTGAAAGAGATCGAAC+TGG | - | chr3.3:86697267-86697286 | None:intergenic | 35.0% | |
| TACTAGGTTGCTTATGATGT+CGG | + | chr3.3:86697476-86697495 | MS.gene42661:CDS | 35.0% | |
| TGCACCCTTTCAAAATTTAC+AGG | - | chr3.3:86697774-86697793 | None:intergenic | 35.0% | |
| TTCTCCCTCCATAAAAACAA+AGG | - | chr3.3:86698119-86698138 | None:intergenic | 35.0% | |
| ! | AGGCTTTTGCTTAAACATTG+TGG | + | chr3.3:86698008-86698027 | MS.gene42661:CDS | 35.0% |
| ! | GAAAGGGTGCATAGTTATTA+TGG | + | chr3.3:86697783-86697802 | MS.gene42661:CDS | 35.0% |
| ! | GATTCATAGCAATCGATTCA+TGG | + | chr3.3:86697064-86697083 | MS.gene42661:CDS | 35.0% |
| ! | TCTTGACGATGTTGAGTTTT+TGG | + | chr3.3:86697620-86697639 | MS.gene42661:CDS | 35.0% |
| ! | TTTTACAGTTGAGAAGAGGT+TGG | + | chr3.3:86697929-86697948 | MS.gene42661:CDS | 35.0% |
| !! | ATTCTGAGATGGATGTTAGA+GGG | + | chr3.3:86698318-86698337 | MS.gene42661:CDS | 35.0% |
| !! | GCAAAAAGCTGAAGTTTTGA+TGG | + | chr3.3:86697401-86697420 | MS.gene42661:CDS | 35.0% |
| !!! | AAGAGATTTTGGTTTGCCAA+TGG | + | chr3.3:86697539-86697558 | MS.gene42661:CDS | 35.0% |
| !!! | AGTTTTTGGAGCTTGTTTCT+TGG | + | chr3.3:86697634-86697653 | MS.gene42661:CDS | 35.0% |
| AAAAGCCTCATCAACTTCTG+AGG | - | chr3.3:86697996-86698015 | None:intergenic | 40.0% | |
| AAACCCTTTGCATCAGCATA+AGG | - | chr3.3:86697849-86697868 | None:intergenic | 40.0% | |
| AACTCAACATCGTCAAGAGA+AGG | - | chr3.3:86697618-86697637 | None:intergenic | 40.0% | |
| AAGGAAGAAGAAGTTTGAGG+CGG | + | chr3.3:86698166-86698185 | MS.gene42661:CDS | 40.0% | |
| AGCTCTATAAGGATCGTAAC+GGG | + | chr3.3:86697358-86697377 | MS.gene42661:CDS | 40.0% | |
| AGGAAGGAAGAAGAAGTTTG+AGG | + | chr3.3:86698163-86698182 | MS.gene42661:CDS | 40.0% | |
| CGAACTGGAATAACCATTTC+TGG | - | chr3.3:86697252-86697271 | None:intergenic | 40.0% | |
| CTTCTTCTCAATCTCTGTGA+TGG | - | chr3.3:86697673-86697692 | None:intergenic | 40.0% | |
| GAATAAGACGATTGTGGAAG+GGG | + | chr3.3:86697692-86697711 | MS.gene42661:CDS | 40.0% | |
| GAGCTCTATAAGGATCGTAA+CGG | + | chr3.3:86697357-86697376 | MS.gene42661:CDS | 40.0% | |
| TAAAGGATCCTTGTACTCCA+AGG | - | chr3.3:86698288-86698307 | None:intergenic | 40.0% | |
| TCTCCTTATGCTGATGCAAA+GGG | + | chr3.3:86697843-86697862 | MS.gene42661:CDS | 40.0% | |
| TCTCGAACAAGAACCAGAAA+TGG | + | chr3.3:86697236-86697255 | MS.gene42661:CDS | 40.0% | |
| TTCACCACACGAAAAAGTTG+AGG | - | chr3.3:86697594-86697613 | None:intergenic | 40.0% | |
| ! | GATAGTGATAGTGATGAGGA+AGG | + | chr3.3:86698188-86698207 | MS.gene42661:CDS | 40.0% |
| ! | GCGCATTTTCGAAGAGATTT+TGG | + | chr3.3:86697528-86697547 | MS.gene42661:CDS | 40.0% |
| ! | TCAGAGATTCTGTGAGGTTT+TGG | - | chr3.3:86697309-86697328 | None:intergenic | 40.0% |
| !! | CTTAGTCTTGTTGGCTATAG+AGG | + | chr3.3:86698143-86698162 | MS.gene42661:CDS | 40.0% |
| !! | GAGAAGCTTCTTAGTCTTGT+TGG | + | chr3.3:86698134-86698153 | MS.gene42661:CDS | 40.0% |
| !! | GATTCTGAGATGGATGTTAG+AGG | + | chr3.3:86698317-86698336 | MS.gene42661:CDS | 40.0% |
| !! | GGTTGATAAACGTGTTCAGT+TGG | + | chr3.3:86697497-86697516 | MS.gene42661:CDS | 40.0% |
| !! | TTATGCCTCAGAAGTTGATG+AGG | + | chr3.3:86697988-86698007 | MS.gene42661:CDS | 40.0% |
| !!! | AGATTCTGTGAGGTTTTGGA+AGG | - | chr3.3:86697305-86697324 | None:intergenic | 40.0% |
| !!! | GTATCCTCAACTTTTTCGTG+TGG | + | chr3.3:86697587-86697606 | MS.gene42661:CDS | 40.0% |
| ACAGGATACCTTGGAGTACA+AGG | + | chr3.3:86698277-86698296 | MS.gene42661:CDS | 45.0% | |
| ATCACCTAACTCACTTCCGT+TGG | + | chr3.3:86697958-86697977 | MS.gene42661:CDS | 45.0% | |
| GAGGCATAACTAACTCCCAA+CGG | - | chr3.3:86697977-86697996 | None:intergenic | 45.0% | |
| GCTCTATAAGGATCGTAACG+GGG | + | chr3.3:86697359-86697378 | MS.gene42661:CDS | 45.0% | |
| GCTTCAGAGTGATTCTGATG+TGG | + | chr3.3:86698229-86698248 | MS.gene42661:CDS | 45.0% | |
| GTACAAGGATCCTTTACTCG+AGG | + | chr3.3:86698292-86698311 | MS.gene42661:CDS | 45.0% | |
| GTCTCCTTATGCTGATGCAA+AGG | + | chr3.3:86697842-86697861 | MS.gene42661:CDS | 45.0% | |
| GTTATTCGCATTGGGAACGA+TGG | + | chr3.3:86697100-86697119 | MS.gene42661:CDS | 45.0% | |
| TCACCTAACTCACTTCCGTT+GGG | + | chr3.3:86697959-86697978 | MS.gene42661:CDS | 45.0% | |
| TCAGAATCGTCCTCGAGTAA+AGG | - | chr3.3:86698305-86698324 | None:intergenic | 45.0% | |
| TCAGAGTGATTCTGATGTGG+AGG | + | chr3.3:86698232-86698251 | MS.gene42661:CDS | 45.0% | |
| TCGAAGCAGCAACAGAGAAA+TGG | + | chr3.3:86697178-86697197 | MS.gene42661:CDS | 45.0% | |
| TGATTCTGATGTGGAGGACT+TGG | + | chr3.3:86698238-86698257 | MS.gene42661:CDS | 45.0% | |
| ! | AATGGTAGCGAAAGCAAACC+CGG | - | chr3.3:86697738-86697757 | None:intergenic | 45.0% |
| ! | AGTGATAGTGATGAGGAAGG+CGG | + | chr3.3:86698191-86698210 | MS.gene42661:CDS | 45.0% |
| ! | GATGCAAAGGGTTTGAAACC+TGG | + | chr3.3:86697855-86697874 | MS.gene42661:CDS | 45.0% |
| ! | GTCTTGTTGGCTATAGAGGA+AGG | + | chr3.3:86698147-86698166 | MS.gene42661:CDS | 45.0% |
| AACTGAAACCGAACACACCC+CGG | + | chr3.3:86697716-86697735 | MS.gene42661:CDS | 50.0% | |
| ACTCCCAACGGAAGTGAGTT+AGG | - | chr3.3:86697965-86697984 | None:intergenic | 50.0% | |
| GCTTGAGCAACAGGATACCT+TGG | + | chr3.3:86698268-86698287 | MS.gene42661:CDS | 50.0% | |
| TGATGTGGAGGACTTGGATG+TGG | + | chr3.3:86698244-86698263 | MS.gene42661:CDS | 50.0% | |
| ! | ACTCGAGGACGATTCTGAGA+TGG | + | chr3.3:86698307-86698326 | MS.gene42661:CDS | 50.0% |
| ! | AGGATCGTAACGGGGTGTTA+TGG | + | chr3.3:86697367-86697386 | MS.gene42661:CDS | 50.0% |
| ! | ATGGTAGCGAAAGCAAACCC+GGG | - | chr3.3:86697737-86697756 | None:intergenic | 50.0% |
| ! | ATGTTTCTGAGAGGGGGAAG+AGG | + | chr3.3:86698039-86698058 | MS.gene42661:CDS | 50.0% |
| ! | GGCGGATAGTGATAGTGATG+AGG | + | chr3.3:86698184-86698203 | MS.gene42661:CDS | 50.0% |
| AAGCAAACCCGGGGTGTGTT+CGG | - | chr3.3:86697727-86697746 | None:intergenic | 55.0% | |
| ACTGAAACCGAACACACCCC+GGG | + | chr3.3:86697717-86697736 | MS.gene42661:CDS | 55.0% | |
| AGTGATGAGGAAGGCGGTGA+TGG | + | chr3.3:86698197-86698216 | MS.gene42661:CDS | 55.0% | |
| GGATGTGGAGCTTGAGCAAC+AGG | + | chr3.3:86698259-86698278 | MS.gene42661:CDS | 55.0% | |
| ! | CGTAACGGGGTGTTATGGTG+TGG | + | chr3.3:86697372-86697391 | MS.gene42661:CDS | 55.0% |
| ! | TGGTAGCGAAAGCAAACCCG+GGG | - | chr3.3:86697736-86697755 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86697054 | 86698349 | 86697054 | ID=MS.gene42661 |
| chr3.3 | mRNA | 86697054 | 86698349 | 86697054 | ID=MS.gene42661.t1;Parent=MS.gene42661 |
| chr3.3 | exon | 86697054 | 86698349 | 86697054 | ID=MS.gene42661.t1.exon1;Parent=MS.gene42661.t1 |
| chr3.3 | CDS | 86697054 | 86698349 | 86697054 | ID=cds.MS.gene42661.t1;Parent=MS.gene42661.t1 |
| Gene Sequence |
| Protein sequence |
