Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43797.t1 | XP_003615624.1 | 89 | 272 | 23 | 2 | 1 | 272 | 1 | 265 | 3.10E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43797.t1 | Q56Y11 | 66.2 | 201 | 68 | 0 | 72 | 272 | 64 | 264 | 8.9e-75 | 282.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43797.t1 | G7K6E4 | 89.0 | 272 | 23 | 2 | 1 | 272 | 1 | 265 | 2.2e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene43797 | 0.80564 | 1.21E-49 | -1.69E-46 |
| MS.gene049757 | MS.gene43797 | 0.836493 | 9.06E-57 | -1.69E-46 |
| MS.gene050170 | MS.gene43797 | 0.857239 | 1.87E-62 | -1.69E-46 |
| MS.gene050323 | MS.gene43797 | 0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene050496 | MS.gene43797 | 0.823005 | 1.75E-53 | -1.69E-46 |
| MS.gene050502 | MS.gene43797 | 0.864165 | 1.48E-64 | -1.69E-46 |
| MS.gene050553 | MS.gene43797 | 0.830682 | 2.56E-55 | -1.69E-46 |
| MS.gene050697 | MS.gene43797 | 0.838006 | 3.71E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene43797 | 0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene43797 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene43797 | 0.82208 | 2.87E-53 | -1.69E-46 |
| MS.gene051941 | MS.gene43797 | 0.839624 | 1.42E-57 | -1.69E-46 |
| MS.gene052346 | MS.gene43797 | 0.869722 | 2.50E-66 | -1.69E-46 |
| MS.gene052414 | MS.gene43797 | 0.832383 | 9.75E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene43797 | 0.804933 | 1.70E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene43797 | 0.81023 | 1.28E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene43797 | 0.820799 | 5.67E-53 | -1.69E-46 |
| MS.gene053889 | MS.gene43797 | 0.804429 | 2.17E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene43797 | 0.807011 | 6.22E-50 | -1.69E-46 |
| MS.gene054344 | MS.gene43797 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene43797 | 0.81091 | 9.11E-51 | -1.69E-46 |
| MS.gene055159 | MS.gene43797 | -0.811772 | 5.92E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene43797 | 0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene43797 | 0.874316 | 7.43E-68 | -1.69E-46 |
| MS.gene055744 | MS.gene43797 | 0.869313 | 3.40E-66 | -1.69E-46 |
| MS.gene05589 | MS.gene43797 | 0.822853 | 1.90E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene43797 | 0.820087 | 8.26E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene43797 | 0.817991 | 2.47E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene43797 | 0.820511 | 6.60E-53 | -1.69E-46 |
| MS.gene056346 | MS.gene43797 | 0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene43797 | 0.822391 | 2.43E-53 | -1.69E-46 |
| MS.gene056508 | MS.gene43797 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene056514 | MS.gene43797 | 0.80486 | 1.76E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene43797 | 0.814409 | 1.56E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene43797 | 0.858364 | 8.67E-63 | -1.69E-46 |
| MS.gene057086 | MS.gene43797 | 0.822301 | 2.55E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene43797 | 0.811255 | 7.67E-51 | -1.69E-46 |
| MS.gene059517 | MS.gene43797 | 0.800978 | 1.12E-48 | -1.69E-46 |
| MS.gene059667 | MS.gene43797 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene43797 | 0.845172 | 4.79E-59 | -1.69E-46 |
| MS.gene060372 | MS.gene43797 | 0.866448 | 2.83E-65 | -1.69E-46 |
| MS.gene060593 | MS.gene43797 | -0.820394 | 7.02E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene43797 | 0.817629 | 2.99E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene43797 | 0.805962 | 1.04E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene43797 | 0.816765 | 4.67E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene43797 | 0.811114 | 8.23E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43797.t1 | MTR_5g070210 | 88.971 | 272 | 23 | 2 | 1 | 272 | 1 | 265 | 5.49e-175 | 491 |
| MS.gene43797.t1 | MTR_5g070250 | 68.944 | 161 | 49 | 1 | 113 | 272 | 20 | 180 | 3.64e-77 | 239 |
| MS.gene43797.t1 | MTR_5g070230 | 58.594 | 128 | 51 | 1 | 45 | 170 | 3 | 130 | 1.20e-46 | 159 |
| MS.gene43797.t1 | MTR_5g070220 | 77.083 | 96 | 22 | 0 | 177 | 272 | 1 | 96 | 2.48e-46 | 157 |
| MS.gene43797.t1 | MTR_5g070270 | 47.967 | 123 | 49 | 5 | 1 | 115 | 1 | 116 | 4.94e-22 | 91.3 |
| MS.gene43797.t1 | MTR_8g073540 | 34.839 | 155 | 92 | 2 | 80 | 228 | 28 | 179 | 6.75e-21 | 94.0 |
| MS.gene43797.t1 | MTR_1g095500 | 34.194 | 155 | 93 | 2 | 80 | 228 | 28 | 179 | 7.15e-21 | 94.0 |
| MS.gene43797.t1 | MTR_3g074950 | 76.744 | 43 | 10 | 0 | 229 | 271 | 2 | 44 | 2.20e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43797.t1 | AT5G58770 | 65.969 | 191 | 65 | 0 | 82 | 272 | 74 | 264 | 1.23e-92 | 282 |
| MS.gene43797.t1 | AT5G58782 | 50.685 | 219 | 104 | 1 | 57 | 275 | 33 | 247 | 1.39e-72 | 230 |
| MS.gene43797.t1 | AT5G58782 | 50.685 | 219 | 104 | 1 | 57 | 275 | 51 | 265 | 1.55e-72 | 230 |
| MS.gene43797.t1 | AT5G58780 | 52.752 | 218 | 95 | 1 | 58 | 275 | 51 | 260 | 1.58e-71 | 228 |
| MS.gene43797.t1 | AT5G58784 | 48.261 | 230 | 115 | 1 | 46 | 275 | 35 | 260 | 1.58e-69 | 223 |
| MS.gene43797.t1 | AT2G23410 | 50.980 | 204 | 99 | 1 | 80 | 282 | 65 | 268 | 1.59e-64 | 209 |
| MS.gene43797.t1 | AT2G23400 | 44.554 | 202 | 89 | 2 | 78 | 275 | 63 | 245 | 2.86e-51 | 174 |
| MS.gene43797.t1 | AT2G23400 | 48.780 | 123 | 63 | 0 | 78 | 200 | 63 | 185 | 1.12e-34 | 128 |
| MS.gene43797.t1 | AT2G17570 | 32.599 | 227 | 116 | 4 | 85 | 283 | 39 | 256 | 4.61e-28 | 112 |
| MS.gene43797.t1 | AT5G60510 | 29.362 | 235 | 142 | 8 | 85 | 309 | 35 | 255 | 1.65e-20 | 91.3 |
| MS.gene43797.t1 | AT5G60500 | 27.820 | 266 | 162 | 9 | 58 | 309 | 5 | 254 | 1.58e-19 | 88.6 |
Find 110 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAAAATAAGATGGAATT+TGG | 0.186602 | 5.1:+54561381 | None:intergenic |
| TACCAAATTCCATCTTATTT+TGG | 0.187683 | 5.1:-54561383 | MS.gene43797:CDS |
| AATGCCATCTTGCACTTTCT+TGG | 0.210412 | 5.1:+54561309 | None:intergenic |
| TTGCATTCTCAACCGATAAT+TGG | 0.274745 | 5.1:-54563703 | MS.gene43797:CDS |
| TAAGCATGTGGCGGTGATTA+TGG | 0.306230 | 5.1:-54563852 | MS.gene43797:CDS |
| GTTGGTGGCGATGGTGGTTG+TGG | 0.320708 | 5.1:-54559179 | MS.gene43797:CDS |
| GTGTTATAGTTGGGGAATAA+AGG | 0.324367 | 5.1:-54563738 | MS.gene43797:CDS |
| CTCATTCTCGATATTCTTCA+AGG | 0.331892 | 5.1:-54564000 | MS.gene43797:CDS |
| TTGGTGGCGATGGTGGTTGT+GGG | 0.338820 | 5.1:-54559178 | MS.gene43797:CDS |
| GCAAGATGGCATTATTCATT+TGG | 0.346742 | 5.1:-54561299 | MS.gene43797:CDS |
| GTTAGAAGCTGCTCCATGTT+TGG | 0.358395 | 5.1:+54559319 | None:intergenic |
| GAGAAACGGACCGAACATTA+TGG | 0.360565 | 5.1:+54559040 | None:intergenic |
| TTAGTAGTAGTAGTTGTCTT+TGG | 0.362349 | 5.1:+54564055 | None:intergenic |
| CTGGTCCGTATTAGTAAATC+CGG | 0.368742 | 5.1:+54561214 | None:intergenic |
| TTCAGAAATGGAGCCATTGC+CGG | 0.378511 | 5.1:-54563900 | MS.gene43797:CDS |
| ATGGGAGGTGGGCAAAGATG+AGG | 0.382978 | 5.1:-54563823 | MS.gene43797:CDS |
| TACTACTAACCATGTTCATC+GGG | 0.399960 | 5.1:-54564041 | MS.gene43797:CDS |
| GGTGAGGTTGTGTTATAGTT+GGG | 0.400487 | 5.1:-54563747 | MS.gene43797:CDS |
| TTCTCCTCGGCCATAATGTT+CGG | 0.400866 | 5.1:-54559050 | MS.gene43797:CDS |
| CAAATGGTTACCGCCATCAA+TGG | 0.418773 | 5.1:+54559086 | None:intergenic |
| CTTACCCGGATTTACTAATA+CGG | 0.419675 | 5.1:-54561219 | MS.gene43797:CDS |
| CTTAGGTCGAATCCAATTAT+CGG | 0.425110 | 5.1:+54563691 | None:intergenic |
| TTCGCTGTTGTTGGTGGCGA+TGG | 0.427921 | 5.1:-54559188 | MS.gene43797:CDS |
| GAAATTGTTCCAACAGCAAA+TGG | 0.430809 | 5.1:+54559070 | None:intergenic |
| CTGGTACACTATGTTATTCA+TGG | 0.431193 | 5.1:+54559211 | None:intergenic |
| CGGCTACATGGCCCGCAGAC+GGG | 0.443873 | 5.1:+54563792 | None:intergenic |
| AAATGAAAATATTATTGAAA+AGG | 0.447113 | 5.1:-54561269 | MS.gene43797:CDS |
| GTAGTAGTAGTTGTCTTTGG+TGG | 0.450585 | 5.1:+54564058 | None:intergenic |
| TGGTGAGGTTGTGTTATAGT+TGG | 0.451686 | 5.1:-54563748 | MS.gene43797:CDS |
| CGGTGATTATGGACGGGAAT+GGG | 0.455731 | 5.1:-54563841 | MS.gene43797:CDS |
| TGGGAGGTGGGCAAAGATGA+GGG | 0.455809 | 5.1:-54563822 | MS.gene43797:CDS |
| GGGAGGTGGGCAAAGATGAG+GGG | 0.456021 | 5.1:-54563821 | MS.gene43797:CDS |
| CTCCACACTTCTATAACGAC+TGG | 0.457321 | 5.1:-54560555 | MS.gene43797:CDS |
| CCGTCTGCGGGCCATGTAGC+CGG | 0.460210 | 5.1:-54563791 | MS.gene43797:CDS |
| GGAATTCAAATATCTGTGAT+TGG | 0.460356 | 5.1:-54561475 | MS.gene43797:CDS |
| CAGCATCACCAACCCATTGA+TGG | 0.471070 | 5.1:-54559099 | MS.gene43797:CDS |
| GGCTCCTGCTTTCTCCTCCA+AGG | 0.471658 | 5.1:+54559379 | None:intergenic |
| ACGGACCAGTGGAGAACTTA+GGG | 0.473431 | 5.1:-54561200 | MS.gene43797:intron |
| GCTTGCAGTTCCTCCGGCAA+TGG | 0.479704 | 5.1:+54563887 | None:intergenic |
| GGAGGTGGGCAAAGATGAGG+GGG | 0.479875 | 5.1:-54563820 | MS.gene43797:CDS |
| CGCCACCAACAACAGCGAAC+TGG | 0.480085 | 5.1:+54559192 | None:intergenic |
| CGATAATTGGATTCGACCTA+AGG | 0.480618 | 5.1:-54563690 | MS.gene43797:intron |
| CGCGGCAATAGTGACGCGTT+TGG | 0.485624 | 5.1:+54563970 | None:intergenic |
| TTATGGACGGGAATGGGAGG+TGG | 0.493196 | 5.1:-54563835 | MS.gene43797:CDS |
| AGCTTACTGCCAAAATAAGA+TGG | 0.496898 | 5.1:+54561374 | None:intergenic |
| GTGTACCAGTTCGCTGTTGT+TGG | 0.499958 | 5.1:-54559197 | MS.gene43797:CDS |
| CTGTTGGAACAATTTCTCCT+CGG | 0.501351 | 5.1:-54559063 | MS.gene43797:CDS |
| AAATGGTTACCGCCATCAAT+GGG | 0.505241 | 5.1:+54559087 | None:intergenic |
| CGTATTAGTAAATCCGGGTA+AGG | 0.505626 | 5.1:+54561220 | None:intergenic |
| AGCTCCGCTTGCAGTTCCTC+CGG | 0.507703 | 5.1:+54563881 | None:intergenic |
| TACGGACCAGTGGAGAACTT+AGG | 0.513930 | 5.1:-54561201 | MS.gene43797:CDS |
| GCGGTGATTATGGACGGGAA+TGG | 0.517607 | 5.1:-54563842 | MS.gene43797:CDS |
| CTACTACTAACCATGTTCAT+CGG | 0.518028 | 5.1:-54564042 | MS.gene43797:CDS |
| GGCTACATGGCCCGCAGACG+GGG | 0.519873 | 5.1:+54563793 | None:intergenic |
| AAAGTATATTGAAGAGACCT+TGG | 0.534780 | 5.1:-54559396 | MS.gene43797:intron |
| AATTTATTGTTCTTTCAAAG+AGG | 0.535873 | 5.1:+54563537 | None:intergenic |
| ACGACTTTACACCGGCTACA+TGG | 0.537578 | 5.1:+54563780 | None:intergenic |
| GAGACCTTGGAGGAGAAAGC+AGG | 0.540530 | 5.1:-54559383 | MS.gene43797:CDS |
| TGGTGGCGATGGTGGTTGTG+GGG | 0.546641 | 5.1:-54559177 | MS.gene43797:CDS |
| CCGGCTACATGGCCCGCAGA+CGG | 0.553831 | 5.1:+54563791 | None:intergenic |
| GTGAGGTTGTGTTATAGTTG+GGG | 0.555675 | 5.1:-54563746 | MS.gene43797:CDS |
| TACCAGTTCGCTGTTGTTGG+TGG | 0.557283 | 5.1:-54559194 | MS.gene43797:CDS |
| ATAATCACCGCCACATGCTT+AGG | 0.560502 | 5.1:+54563854 | None:intergenic |
| TTGTACAGAATTTCCTTACC+CGG | 0.560525 | 5.1:-54561233 | MS.gene43797:CDS |
| TATGGACGGGAATGGGAGGT+GGG | 0.565954 | 5.1:-54563834 | MS.gene43797:CDS |
| TGGCGGTAACCATTTGCTGT+TGG | 0.567833 | 5.1:-54559079 | MS.gene43797:CDS |
| GATAGTCACCATGGTGAAGA+GGG | 0.568980 | 5.1:-54559126 | MS.gene43797:CDS |
| ACTAACCCTAAGTTCTCCAC+TGG | 0.570013 | 5.1:+54561195 | None:intergenic |
| ATGTGGCGGTGATTATGGAC+GGG | 0.576395 | 5.1:-54563847 | MS.gene43797:CDS |
| GTATATTGAAGAGACCTTGG+AGG | 0.576602 | 5.1:-54559393 | MS.gene43797:intron |
| GCTGTTGTTGGTGGCGATGG+TGG | 0.579018 | 5.1:-54559185 | MS.gene43797:CDS |
| TGTAAAGTCGTTGAGAAGGA+TGG | 0.579930 | 5.1:-54563768 | MS.gene43797:CDS |
| CATGTGGCGGTGATTATGGA+CGG | 0.587809 | 5.1:-54563848 | MS.gene43797:CDS |
| GACGAGGAAACTTCCGTGGA+CGG | 0.589864 | 5.1:-54563929 | MS.gene43797:CDS |
| TGATAGTCACCATGGTGAAG+AGG | 0.590476 | 5.1:-54559127 | MS.gene43797:CDS |
| CTGAAATTGAAGCACTAGAG+AGG | 0.594486 | 5.1:-54563514 | MS.gene43797:intron |
| ATTGCCGGAGGAACTGCAAG+CGG | 0.596025 | 5.1:-54563885 | MS.gene43797:CDS |
| CCACATTGAGGACAAGATTG+AGG | 0.598708 | 5.1:-54560500 | MS.gene43797:CDS |
| TCCACACTTCTATAACGACT+GGG | 0.602240 | 5.1:-54560554 | MS.gene43797:CDS |
| GGTTACCGCCATCAATGGGT+TGG | 0.606157 | 5.1:+54559091 | None:intergenic |
| CGGACCGAACATTATGGCCG+AGG | 0.614088 | 5.1:+54559046 | None:intergenic |
| TGATTATGGACGGGAATGGG+AGG | 0.615382 | 5.1:-54563838 | MS.gene43797:CDS |
| GGAGCCACATTGAAGCAGAC+TGG | 0.616403 | 5.1:-54559362 | MS.gene43797:CDS |
| CAAACGCGTCACTATTGCCG+CGG | 0.621205 | 5.1:-54563969 | MS.gene43797:CDS |
| CCGGTGTAAAGTCGTTGAGA+AGG | 0.624155 | 5.1:-54563772 | MS.gene43797:CDS |
| AGTCGTTGAGAAGGATGGTG+AGG | 0.625194 | 5.1:-54563763 | MS.gene43797:CDS |
| GGAGCTGATGCCTAAGCATG+TGG | 0.626089 | 5.1:-54563864 | MS.gene43797:CDS |
| CATGCACAACTACACGAACA+AGG | 0.631955 | 5.1:+54559297 | None:intergenic |
| GCCCAGTCGTTATAGAAGTG+TGG | 0.632030 | 5.1:+54560553 | None:intergenic |
| AGAAATGGAGCCATTGCCGG+AGG | 0.635367 | 5.1:-54563897 | MS.gene43797:CDS |
| CATAAGTATGATAGTCACCA+TGG | 0.638114 | 5.1:-54559135 | MS.gene43797:CDS |
| CCTTCTCAACGACTTTACAC+CGG | 0.638232 | 5.1:+54563772 | None:intergenic |
| TAGTGCTGAGGAGAGTACAA+AGG | 0.639099 | 5.1:-54561410 | MS.gene43797:CDS |
| AATCGCGCTTATTCCAAACA+TGG | 0.644093 | 5.1:-54559332 | MS.gene43797:CDS |
| GCTACATGGCCCGCAGACGG+GGG | 0.645504 | 5.1:+54563794 | None:intergenic |
| TAAGAGTTCACACCACATTG+AGG | 0.646156 | 5.1:-54560512 | MS.gene43797:CDS |
| TTGTCTCTTATCATAAAGCA+AGG | 0.648305 | 5.1:+54559269 | None:intergenic |
| TGTGCCAGTCTGCTTCAATG+TGG | 0.649741 | 5.1:+54559358 | None:intergenic |
| GTAGCCAAGAAAGTGCAAGA+TGG | 0.652351 | 5.1:-54561313 | MS.gene43797:CDS |
| TGGTCCGTATTAGTAAATCC+GGG | 0.652721 | 5.1:+54561215 | None:intergenic |
| CCTCAATCTTGTCCTCAATG+TGG | 0.662689 | 5.1:+54560500 | None:intergenic |
| GGTGGACGAGGAAACTTCCG+TGG | 0.663208 | 5.1:-54563933 | MS.gene43797:CDS |
| GCTGAGCACCCTCTTCACCA+TGG | 0.669548 | 5.1:+54559118 | None:intergenic |
| CACCTGATCCTGAAAAGCCG+CGG | 0.670735 | 5.1:+54563952 | None:intergenic |
| AAGTATGATAGCTAGTGCTG+AGG | 0.671510 | 5.1:-54561422 | MS.gene43797:CDS |
| CTACTAACCATGTTCATCGG+GGG | 0.676277 | 5.1:-54564039 | MS.gene43797:CDS |
| CATCACCAACCCATTGATGG+CGG | 0.679621 | 5.1:-54559096 | MS.gene43797:CDS |
| ACTACTAACCATGTTCATCG+GGG | 0.699404 | 5.1:-54564040 | MS.gene43797:CDS |
| GATTTACTAATACGGACCAG+TGG | 0.708808 | 5.1:-54561211 | MS.gene43797:CDS |
| GCTGATGCCTAAGCATGTGG+CGG | 0.712093 | 5.1:-54563861 | MS.gene43797:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAAAA+AGG | + | chr5.1:54560015-54560034 | None:intergenic | 0.0% |
| !!! | AATTAATATATATATTTTTT+AGG | - | chr5.1:54560186-54560205 | MS.gene43797:intron | 0.0% |
| !!! | ATTAATATATATATTTTTTA+GGG | - | chr5.1:54560187-54560206 | MS.gene43797:intron | 0.0% |
| !! | AAATGAAAATATTATTGAAA+AGG | - | chr5.1:54561874-54561893 | MS.gene43797:intron | 10.0% |
| !! | AGAAAATAATTACTAAATTA+AGG | - | chr5.1:54560876-54560895 | MS.gene43797:intron | 10.0% |
| !! | TGTCTAAATAAATTAAATAT+CGG | + | chr5.1:54562292-54562311 | None:intergenic | 10.0% |
| !!! | ATATCTATATATTTTTTGAA+AGG | + | chr5.1:54560103-54560122 | None:intergenic | 10.0% |
| !!! | CAACAAAATATTTTAAAATA+TGG | + | chr5.1:54559957-54559976 | None:intergenic | 10.0% |
| !!! | TTTCTTTTTTTTTTTTTTTG+TGG | + | chr5.1:54560469-54560488 | None:intergenic | 10.0% |
| !! | AAACTACTTGTAATAAATAA+TGG | + | chr5.1:54559694-54559713 | None:intergenic | 15.0% |
| !! | ATAATTACTAAATTAAGGAA+AGG | - | chr5.1:54560881-54560900 | MS.gene43797:intron | 15.0% |
| !! | TAATTACTAAATTAAGGAAA+GGG | - | chr5.1:54560882-54560901 | MS.gene43797:intron | 15.0% |
| !!! | AGAGTATTTTTTTTTTCTAT+AGG | - | chr5.1:54560970-54560989 | MS.gene43797:intron | 15.0% |
| !!! | TCTCAATATAAATGTTTTTA+AGG | + | chr5.1:54560662-54560681 | None:intergenic | 15.0% |
| !!! | TTATTCTTAGTTTTGATTAT+TGG | - | chr5.1:54559541-54559560 | MS.gene43797:intron | 15.0% |
| !!! | TTTTCTTTAATAGAAAACTT+TGG | - | chr5.1:54562005-54562024 | MS.gene43797:intron | 15.0% |
| !!! | TTTTTTTGAGAAAATTATTG+TGG | - | chr5.1:54562213-54562232 | MS.gene43797:intron | 15.0% |
| !! | AATATACTTTCCATCATTAT+TGG | + | chr5.1:54563737-54563756 | None:intergenic | 20.0% |
| !! | AATGTAAAACGACTTATAAT+AGG | - | chr5.1:54563196-54563215 | MS.gene43797:intron | 20.0% |
| !! | AATTACTAAATTAAGGAAAG+GGG | - | chr5.1:54560883-54560902 | MS.gene43797:intron | 20.0% |
| !! | AATTTATTGTTCTTTCAAAG+AGG | + | chr5.1:54559609-54559628 | None:intergenic | 20.0% |
| !! | ATGTAAGATCACTTAATATA+AGG | + | chr5.1:54561289-54561308 | None:intergenic | 20.0% |
| !! | GTATATATAAATGTCTCTTA+AGG | + | chr5.1:54560423-54560442 | None:intergenic | 20.0% |
| !! | TGTAAGATCACTTAATATAA+GGG | + | chr5.1:54561288-54561307 | None:intergenic | 20.0% |
| !! | TTTATATATACTGAGATGAA+TGG | - | chr5.1:54560432-54560451 | MS.gene43797:intron | 20.0% |
| !!! | AAGTCTTATTGTATTTATTG+TGG | - | chr5.1:54562185-54562204 | MS.gene43797:intron | 20.0% |
| !!! | AATATGTCACTTAATATAAG+GGG | + | chr5.1:54561613-54561632 | None:intergenic | 20.0% |
| !!! | ATGTTGATAACTTTTTCAAT+AGG | - | chr5.1:54561039-54561058 | MS.gene43797:intron | 20.0% |
| !!! | CTTTTTTTTTTTTTTTGTGG+TGG | + | chr5.1:54560466-54560485 | None:intergenic | 20.0% |
| !!! | GAATATGTCACTTAATATAA+GGG | + | chr5.1:54561614-54561633 | None:intergenic | 20.0% |
| !!! | TAAGATGTTTTATCATATGT+GGG | + | chr5.1:54563133-54563152 | None:intergenic | 20.0% |
| !!! | TGAATATGTCACTTAATATA+AGG | + | chr5.1:54561615-54561634 | None:intergenic | 20.0% |
| !!! | TGTTGATAACTTTTTCAATA+GGG | - | chr5.1:54561040-54561059 | MS.gene43797:intron | 20.0% |
| !!! | TTGCATTTAGTTTTTATTGT+AGG | - | chr5.1:54562680-54562699 | MS.gene43797:intron | 20.0% |
| ! | AAACTTAATGCCAATAATGA+TGG | - | chr5.1:54563724-54563743 | MS.gene43797:CDS | 25.0% |
| ! | AATAAAGTTGAAGCTATACT+TGG | + | chr5.1:54563599-54563618 | None:intergenic | 25.0% |
| ! | AATAAATACCACAACCATAT+TGG | + | chr5.1:54562133-54562152 | None:intergenic | 25.0% |
| ! | AATTACTTAAAGCAGTCATA+GGG | + | chr5.1:54560244-54560263 | None:intergenic | 25.0% |
| ! | ACTTAATATAAGGGGAAAAA+AGG | + | chr5.1:54561279-54561298 | None:intergenic | 25.0% |
| ! | ATGACATTAGTTATTGATAG+TGG | - | chr5.1:54559518-54559537 | MS.gene43797:intron | 25.0% |
| ! | CATAATAACTGCTATATCAT+AGG | - | chr5.1:54562916-54562935 | MS.gene43797:intron | 25.0% |
| ! | CATATACTTATTCTCCAATA+TGG | - | chr5.1:54562116-54562135 | MS.gene43797:intron | 25.0% |
| ! | CATATGATAAAACATCTTAC+TGG | - | chr5.1:54563134-54563153 | MS.gene43797:intron | 25.0% |
| ! | CATATTGGAGAATAAGTATA+TGG | + | chr5.1:54562118-54562137 | None:intergenic | 25.0% |
| ! | CTAATTCATTTCCTAAAAGT+TGG | - | chr5.1:54563449-54563468 | MS.gene43797:intron | 25.0% |
| ! | GAAAAAAAAAATACTCTCTC+TGG | + | chr5.1:54560967-54560986 | None:intergenic | 25.0% |
| ! | GGTAAAACAAAAACACAATT+AGG | + | chr5.1:54562340-54562359 | None:intergenic | 25.0% |
| ! | GTAAGATCACTTAATATAAG+GGG | + | chr5.1:54561287-54561306 | None:intergenic | 25.0% |
| ! | TAATTACTTAAAGCAGTCAT+AGG | + | chr5.1:54560245-54560264 | None:intergenic | 25.0% |
| ! | TCAAATTTGCATATAACATG+CGG | + | chr5.1:54562724-54562743 | None:intergenic | 25.0% |
| ! | TCATGACTAAAATTTGATAG+AGG | + | chr5.1:54563263-54563282 | None:intergenic | 25.0% |
| ! | TCTTGAGTATAAAAAACGAA+AGG | + | chr5.1:54560944-54560963 | None:intergenic | 25.0% |
| !! | AAGATGTTTTATCATATGTG+GGG | + | chr5.1:54563132-54563151 | None:intergenic | 25.0% |
| !! | ATCATACTTTTCAATGACTT+GGG | + | chr5.1:54561710-54561729 | None:intergenic | 25.0% |
| !! | ATTTCAGACATGAAATTTTG+AGG | + | chr5.1:54562798-54562817 | None:intergenic | 25.0% |
| !! | CTATAGGTATTTTTCATTAG+AGG | - | chr5.1:54560986-54561005 | MS.gene43797:intron | 25.0% |
| !! | CTTTCAATTTTCCAACTTTT+AGG | + | chr5.1:54563463-54563482 | None:intergenic | 25.0% |
| !! | GTAAGATGTTTTATCATATG+TGG | + | chr5.1:54563134-54563153 | None:intergenic | 25.0% |
| !! | TAATTTCTTGTTATGGCAAT+TGG | - | chr5.1:54561970-54561989 | MS.gene43797:intron | 25.0% |
| !! | TATCATACTTTTCAATGACT+TGG | + | chr5.1:54561711-54561730 | None:intergenic | 25.0% |
| !!! | GGAGTATGAATTTTAAAGAT+TGG | + | chr5.1:54563491-54563510 | None:intergenic | 25.0% |
| !!! | GTTATAAGAGTTTTATCTAG+TGG | + | chr5.1:54559061-54559080 | None:intergenic | 25.0% |
| !!! | TACCAAATTCCATCTTATTT+TGG | - | chr5.1:54561760-54561779 | MS.gene43797:intron | 25.0% |
| !!! | TCTATTTTGGAATGAAGTTA+AGG | + | chr5.1:54562062-54562081 | None:intergenic | 25.0% |
| AAAGTATATTGAAGAGACCT+TGG | - | chr5.1:54563747-54563766 | MS.gene43797:CDS | 30.0% | |
| AACAAATAACCAATGTGAGT+TGG | + | chr5.1:54561452-54561471 | None:intergenic | 30.0% | |
| AACACCATTTGCTTTGTAAT+AGG | - | chr5.1:54561642-54561661 | MS.gene43797:intron | 30.0% | |
| ACAAATAACCAATGTGAGTT+GGG | + | chr5.1:54561451-54561470 | None:intergenic | 30.0% | |
| ACACCATTTGCTTTGTAATA+GGG | - | chr5.1:54561643-54561662 | MS.gene43797:intron | 30.0% | |
| AGTGAGATTAAAATGACCTT+AGG | + | chr5.1:54559472-54559491 | None:intergenic | 30.0% | |
| ATAATTTCCCTGTCAAAAAG+AGG | + | chr5.1:54560635-54560654 | None:intergenic | 30.0% | |
| ATGAGACATTTGTTTGACAA+CGG | - | chr5.1:54562493-54562512 | MS.gene43797:intron | 30.0% | |
| ATGGTTGTGGTATTTATTGT+GGG | - | chr5.1:54562135-54562154 | MS.gene43797:intron | 30.0% | |
| ATTACTTAAAGCAGTCATAG+GGG | + | chr5.1:54560243-54560262 | None:intergenic | 30.0% | |
| CATTGAACCATATATCTCAT+CGG | + | chr5.1:54562547-54562566 | None:intergenic | 30.0% | |
| GGAATTCAAATATCTGTGAT+TGG | - | chr5.1:54561668-54561687 | MS.gene43797:intron | 30.0% | |
| TACCTCTAATGACAAAGTAA+TGG | + | chr5.1:54561336-54561355 | None:intergenic | 30.0% | |
| TATGGTTGTGGTATTTATTG+TGG | - | chr5.1:54562134-54562153 | MS.gene43797:intron | 30.0% | |
| TGCCAAAATAAGATGGAATT+TGG | + | chr5.1:54561765-54561784 | None:intergenic | 30.0% | |
| TTAGTAGTAGTAGTTGTCTT+TGG | + | chr5.1:54559091-54559110 | None:intergenic | 30.0% | |
| TTGTCTCTTATCATAAAGCA+AGG | + | chr5.1:54563877-54563896 | None:intergenic | 30.0% | |
| ! | AAAACACTGTGTTTTCTTCT+TGG | - | chr5.1:54560742-54560761 | MS.gene43797:intron | 30.0% |
| ! | AGATGTTTTATCATATGTGG+GGG | + | chr5.1:54563131-54563150 | None:intergenic | 30.0% |
| ! | AGTGATGCATTGATATTGTA+GGG | - | chr5.1:54559870-54559889 | MS.gene43797:intron | 30.0% |
| ! | GAGTCGTAACTTAAAACTTT+TGG | + | chr5.1:54562431-54562450 | None:intergenic | 30.0% |
| ! | GGGTTAGTAATTTCTTGTTA+TGG | - | chr5.1:54561963-54561982 | MS.gene43797:intron | 30.0% |
| ! | GTTACAAAGATGACATGTTT+TGG | + | chr5.1:54563360-54563379 | None:intergenic | 30.0% |
| ! | TAGTGATGCATTGATATTGT+AGG | - | chr5.1:54559869-54559888 | MS.gene43797:intron | 30.0% |
| ! | TCATACTTTTCAATGACTTG+GGG | + | chr5.1:54561709-54561728 | None:intergenic | 30.0% |
| ! | TCGTAACTTAAAACTTTTGG+AGG | + | chr5.1:54562428-54562447 | None:intergenic | 30.0% |
| ! | TGTATAACCTCTTTTTGACA+GGG | - | chr5.1:54560625-54560644 | MS.gene43797:intron | 30.0% |
| ! | TTGTATAACCTCTTTTTGAC+AGG | - | chr5.1:54560624-54560643 | MS.gene43797:intron | 30.0% |
| !!! | AAAGATGACATGTTTTGGTT+TGG | + | chr5.1:54563355-54563374 | None:intergenic | 30.0% |
| !!! | GTTTTGATTATTGGTGTTAC+TGG | - | chr5.1:54559550-54559569 | MS.gene43797:intron | 30.0% |
| AACAAATAACCAACGTGAGT+TGG | + | chr5.1:54561123-54561142 | None:intergenic | 35.0% | |
| AACTCATCCTTTCCAAAATC+TGG | + | chr5.1:54562031-54562050 | None:intergenic | 35.0% | |
| AGCTTACTGCCAAAATAAGA+TGG | + | chr5.1:54561772-54561791 | None:intergenic | 35.0% | |
| ATAGCAATGAGCATAAAGAG+TGG | - | chr5.1:54563687-54563706 | MS.gene43797:intron | 35.0% | |
| CAATCCTTAATCAATGGTTG+TGG | + | chr5.1:54562376-54562395 | None:intergenic | 35.0% | |
| CACCATTACTTTGTCATTAG+AGG | - | chr5.1:54561331-54561350 | MS.gene43797:CDS | 35.0% | |
| CATAAGTATGATAGTCACCA+TGG | - | chr5.1:54564008-54564027 | MS.gene43797:CDS | 35.0% | |
| CATTTGCTTTGTAATAGGGA+AGG | - | chr5.1:54561647-54561666 | MS.gene43797:intron | 35.0% | |
| CTACTACTAACCATGTTCAT+CGG | - | chr5.1:54559101-54559120 | MS.gene43797:CDS | 35.0% | |
| CTCATTCTCGATATTCTTCA+AGG | - | chr5.1:54559143-54559162 | MS.gene43797:CDS | 35.0% | |
| CTGGTACACTATGTTATTCA+TGG | + | chr5.1:54563935-54563954 | None:intergenic | 35.0% | |
| CTTACCCGGATTTACTAATA+CGG | - | chr5.1:54561924-54561943 | MS.gene43797:intron | 35.0% | |
| CTTAGGTCGAATCCAATTAT+CGG | + | chr5.1:54559455-54559474 | None:intergenic | 35.0% | |
| CTTATTCTCCAATATGGTTG+TGG | - | chr5.1:54562122-54562141 | MS.gene43797:intron | 35.0% | |
| CTTCCCTATTACAAAGCAAA+TGG | + | chr5.1:54561649-54561668 | None:intergenic | 35.0% | |
| GAAATTGTTCCAACAGCAAA+TGG | + | chr5.1:54564076-54564095 | None:intergenic | 35.0% | |
| GCAAGATGGCATTATTCATT+TGG | - | chr5.1:54561844-54561863 | MS.gene43797:intron | 35.0% | |
| GTGTTATAGTTGGGGAATAA+AGG | - | chr5.1:54559405-54559424 | MS.gene43797:intron | 35.0% | |
| TACTACTAACCATGTTCATC+GGG | - | chr5.1:54559102-54559121 | MS.gene43797:CDS | 35.0% | |
| TAGAAATGAAGAAGCTGAGA+GGG | + | chr5.1:54563532-54563551 | None:intergenic | 35.0% | |
| TTAGAAATGAAGAAGCTGAG+AGG | + | chr5.1:54563533-54563552 | None:intergenic | 35.0% | |
| TTGCATTCTCAACCGATAAT+TGG | - | chr5.1:54559440-54559459 | MS.gene43797:intron | 35.0% | |
| TTGTACAGAATTTCCTTACC+CGG | - | chr5.1:54561910-54561929 | MS.gene43797:intron | 35.0% | |
| ! | AACACACTGTGTTTTCTTCT+TGG | - | chr5.1:54560848-54560867 | MS.gene43797:intron | 35.0% |
| ! | AGAAAACTTTGGCCAGATTT+TGG | - | chr5.1:54562016-54562035 | MS.gene43797:intron | 35.0% |
| ! | ATTTTCACAAGTGCTCGAAA+TGG | - | chr5.1:54562816-54562835 | MS.gene43797:intron | 35.0% |
| ! | CAAAACGTCTCTGTCTATTT+TGG | + | chr5.1:54562075-54562094 | None:intergenic | 35.0% |
| ! | CAAAATAGACAGAGACGTTT+TGG | - | chr5.1:54562073-54562092 | MS.gene43797:intron | 35.0% |
| ! | CAACCATTGATTAAGGATTG+TGG | - | chr5.1:54562376-54562395 | MS.gene43797:intron | 35.0% |
| ! | CACTTGCAAAAGAAGTTTTG+AGG | - | chr5.1:54563001-54563020 | MS.gene43797:intron | 35.0% |
| ! | TTGTCCACAACCATTGATTA+AGG | - | chr5.1:54562369-54562388 | MS.gene43797:intron | 35.0% |
| !! | AAGAGTTTTATCTAGTGGCA+TGG | + | chr5.1:54559056-54559075 | None:intergenic | 35.0% |
| !! | AGAGTTTTATCTAGTGGCAT+GGG | + | chr5.1:54559055-54559074 | None:intergenic | 35.0% |
| !! | ATTTTGGCAGTAAGCTATAG+TGG | - | chr5.1:54561776-54561795 | MS.gene43797:intron | 35.0% |
| !!! | TTGCTCTTTTGTTTTCACGA+CGG | + | chr5.1:54563902-54563921 | None:intergenic | 35.0% |
| AAATGGTTACCGCCATCAAT+GGG | + | chr5.1:54564059-54564078 | None:intergenic | 40.0% | |
| AAGTATGATAGCTAGTGCTG+AGG | - | chr5.1:54561721-54561740 | MS.gene43797:intron | 40.0% | |
| AATCGCGCTTATTCCAAACA+TGG | - | chr5.1:54563811-54563830 | MS.gene43797:CDS | 40.0% | |
| AATGCCATCTTGCACTTTCT+TGG | + | chr5.1:54561837-54561856 | None:intergenic | 40.0% | |
| ACTACTAACCATGTTCATCG+GGG | - | chr5.1:54559103-54559122 | MS.gene43797:CDS | 40.0% | |
| ACTGATTGACATCACATGCT+TGG | + | chr5.1:54561497-54561516 | None:intergenic | 40.0% | |
| AGAAATGAAGAAGCTGAGAG+GGG | + | chr5.1:54563531-54563550 | None:intergenic | 40.0% | |
| ATGCTCATTGCTATATGCGT+TGG | + | chr5.1:54563681-54563700 | None:intergenic | 40.0% | |
| ATGGTCGTCTGAAGACAATT+AGG | - | chr5.1:54562835-54562854 | MS.gene43797:intron | 40.0% | |
| CAATGAGCATAAAGAGTGGA+AGG | - | chr5.1:54563691-54563710 | MS.gene43797:CDS | 40.0% | |
| CAATGCTTTGATTCATCGCA+TGG | - | chr5.1:54561400-54561419 | MS.gene43797:CDS | 40.0% | |
| CGACTCTTTCATATACTCCA+AGG | - | chr5.1:54562445-54562464 | MS.gene43797:intron | 40.0% | |
| CGATAATTGGATTCGACCTA+AGG | - | chr5.1:54559453-54559472 | MS.gene43797:intron | 40.0% | |
| CGTATTAGTAAATCCGGGTA+AGG | + | chr5.1:54561926-54561945 | None:intergenic | 40.0% | |
| CTCATGTCAAACGTAGTATG+TGG | + | chr5.1:54562478-54562497 | None:intergenic | 40.0% | |
| CTGCCACAATCCTTAATCAA+TGG | + | chr5.1:54562382-54562401 | None:intergenic | 40.0% | |
| CTGGTCCGTATTAGTAAATC+CGG | + | chr5.1:54561932-54561951 | None:intergenic | 40.0% | |
| CTGTTGGAACAATTTCTCCT+CGG | - | chr5.1:54564080-54564099 | MS.gene43797:CDS | 40.0% | |
| GATTTACTAATACGGACCAG+TGG | - | chr5.1:54561932-54561951 | MS.gene43797:intron | 40.0% | |
| GGTGAGGTTGTGTTATAGTT+GGG | - | chr5.1:54559396-54559415 | MS.gene43797:intron | 40.0% | |
| GGTTGTGGACAAATCTCAAT+GGG | + | chr5.1:54562361-54562380 | None:intergenic | 40.0% | |
| GTAGTAGTAGTTGTCTTTGG+TGG | + | chr5.1:54559088-54559107 | None:intergenic | 40.0% | |
| GTATATTGAAGAGACCTTGG+AGG | - | chr5.1:54563750-54563769 | MS.gene43797:CDS | 40.0% | |
| GTGAGGTTGTGTTATAGTTG+GGG | - | chr5.1:54559397-54559416 | MS.gene43797:intron | 40.0% | |
| TAAGAGTTCACACCACATTG+AGG | - | chr5.1:54562631-54562650 | MS.gene43797:intron | 40.0% | |
| TCCACACTTCTATAACGACT+GGG | - | chr5.1:54562589-54562608 | MS.gene43797:intron | 40.0% | |
| TGGTCCGTATTAGTAAATCC+GGG | + | chr5.1:54561931-54561950 | None:intergenic | 40.0% | |
| TGGTCGTCTGAAGACAATTA+GGG | - | chr5.1:54562836-54562855 | MS.gene43797:intron | 40.0% | |
| TGGTGAGGTTGTGTTATAGT+TGG | - | chr5.1:54559395-54559414 | MS.gene43797:intron | 40.0% | |
| TGGTTGTGGACAAATCTCAA+TGG | + | chr5.1:54562362-54562381 | None:intergenic | 40.0% | |
| TGTAAAGTCGTTGAGAAGGA+TGG | - | chr5.1:54559375-54559394 | MS.gene43797:CDS | 40.0% | |
| ! | AATAGACAGAGACGTTTTGG+TGG | - | chr5.1:54562076-54562095 | MS.gene43797:intron | 40.0% |
| ! | CTGAAATTGAAGCACTAGAG+AGG | - | chr5.1:54559629-54559648 | MS.gene43797:intron | 40.0% |
| ! | TTCTGAAAAATCTCCGTCCA+CGG | + | chr5.1:54559230-54559249 | None:intergenic | 40.0% |
| !! | ACTTTGGCCAGATTTTGGAA+AGG | - | chr5.1:54562021-54562040 | MS.gene43797:intron | 40.0% |
| !! | GGACGGAGATTTTTCAGAAA+TGG | - | chr5.1:54559231-54559250 | MS.gene43797:CDS | 40.0% |
| !!! | ACATGTTTTGGTTTGGTAGC+TGG | + | chr5.1:54563348-54563367 | None:intergenic | 40.0% |
| ACTAACCCTAAGTTCTCCAC+TGG | + | chr5.1:54561951-54561970 | None:intergenic | 45.0% | |
| ATAATCACCGCCACATGCTT+AGG | + | chr5.1:54559292-54559311 | None:intergenic | 45.0% | |
| ATGCTAGACCCAACTCACAT+TGG | - | chr5.1:54561440-54561459 | MS.gene43797:CDS | 45.0% | |
| CAAATGGTTACCGCCATCAA+TGG | + | chr5.1:54564060-54564079 | None:intergenic | 45.0% | |
| CATGCACAACTACACGAACA+AGG | + | chr5.1:54563849-54563868 | None:intergenic | 45.0% | |
| CCACATTGAGGACAAGATTG+AGG | - | chr5.1:54562643-54562662 | MS.gene43797:intron | 45.0% | |
| CCATCAGCCGATGAGATATA+TGG | - | chr5.1:54562537-54562556 | MS.gene43797:intron | 45.0% | |
| CCTCAATCTTGTCCTCAATG+TGG | + | chr5.1:54562646-54562665 | None:intergenic | 45.0% | |
| CCTTCTCAACGACTTTACAC+CGG | + | chr5.1:54559374-54559393 | None:intergenic | 45.0% | |
| CTACTAACCATGTTCATCGG+GGG | - | chr5.1:54559104-54559123 | MS.gene43797:CDS | 45.0% | |
| CTCCACACTTCTATAACGAC+TGG | - | chr5.1:54562588-54562607 | MS.gene43797:intron | 45.0% | |
| GAGAAACGGACCGAACATTA+TGG | + | chr5.1:54564106-54564125 | None:intergenic | 45.0% | |
| GATAGTCACCATGGTGAAGA+GGG | - | chr5.1:54564017-54564036 | MS.gene43797:CDS | 45.0% | |
| GTTAGAAGCTGCTCCATGTT+TGG | + | chr5.1:54563827-54563846 | None:intergenic | 45.0% | |
| TAAGCATGTGGCGGTGATTA+TGG | - | chr5.1:54559291-54559310 | MS.gene43797:CDS | 45.0% | |
| TGATAGTCACCATGGTGAAG+AGG | - | chr5.1:54564016-54564035 | MS.gene43797:CDS | 45.0% | |
| TGTTACTGGTGATATGCAGG+TGG | - | chr5.1:54559564-54559583 | MS.gene43797:intron | 45.0% | |
| TTCAGAAATGGAGCCATTGC+CGG | - | chr5.1:54559243-54559262 | MS.gene43797:CDS | 45.0% | |
| TTCTCCTCGGCCATAATGTT+CGG | - | chr5.1:54564093-54564112 | MS.gene43797:CDS | 45.0% | |
| ! | CCATATATCTCATCGGCTGA+TGG | + | chr5.1:54562540-54562559 | None:intergenic | 45.0% |
| ! | GTAGCCAAGAAAGTGCAAGA+TGG | - | chr5.1:54561830-54561849 | MS.gene43797:intron | 45.0% |
| ! | TAGTGCTGAGGAGAGTACAA+AGG | - | chr5.1:54561733-54561752 | MS.gene43797:intron | 45.0% |
| ! | TGGCTACACTTTTGCATGCT+TGG | + | chr5.1:54561817-54561836 | None:intergenic | 45.0% |
| ! | TGTGAGTTGGGTCTAGCATA+AGG | + | chr5.1:54561439-54561458 | None:intergenic | 45.0% |
| !! | AACCAACGTGAGTTGGTTCT+GGG | + | chr5.1:54561116-54561135 | None:intergenic | 45.0% |
| !! | TAACCAACGTGAGTTGGTTC+TGG | + | chr5.1:54561117-54561136 | None:intergenic | 45.0% |
| !! | TGGTGTTACTGGTGATATGC+AGG | - | chr5.1:54559561-54559580 | MS.gene43797:intron | 45.0% |
| !!! | CTTTTTTTTAAAAAAAAAAT+TGG | - | chr5.1:54560532-54560551 | MS.gene43797:CDS | 5.0% |
| !!! | GAATTATTTTTTTAAAAAAA+AGG | - | chr5.1:54560330-54560349 | MS.gene43797:intron | 5.0% |
| !!! | TTAATATATATATTTTTTAG+GGG | - | chr5.1:54560188-54560207 | MS.gene43797:intron | 5.0% |
| !!! | TTATTATTATTATTTTTGAA+TGG | + | chr5.1:54560128-54560147 | None:intergenic | 5.0% |
| ACGGACCAGTGGAGAACTTA+GGG | - | chr5.1:54561943-54561962 | MS.gene43797:intron | 50.0% | |
| AGTCGTTGAGAAGGATGGTG+AGG | - | chr5.1:54559380-54559399 | MS.gene43797:CDS | 50.0% | |
| ATGTGGCGGTGATTATGGAC+GGG | - | chr5.1:54559296-54559315 | MS.gene43797:CDS | 50.0% | |
| CAGCATCACCAACCCATTGA+TGG | - | chr5.1:54564044-54564063 | MS.gene43797:CDS | 50.0% | |
| CATCACCAACCCATTGATGG+CGG | - | chr5.1:54564047-54564066 | MS.gene43797:CDS | 50.0% | |
| CATGTGGCGGTGATTATGGA+CGG | - | chr5.1:54559295-54559314 | MS.gene43797:CDS | 50.0% | |
| CCGGTGTAAAGTCGTTGAGA+AGG | - | chr5.1:54559371-54559390 | MS.gene43797:CDS | 50.0% | |
| CGGTGATTATGGACGGGAAT+GGG | - | chr5.1:54559302-54559321 | MS.gene43797:CDS | 50.0% | |
| GCCCAGTCGTTATAGAAGTG+TGG | + | chr5.1:54562593-54562612 | None:intergenic | 50.0% | |
| GTGTACCAGTTCGCTGTTGT+TGG | - | chr5.1:54563946-54563965 | MS.gene43797:CDS | 50.0% | |
| TACCAGTTCGCTGTTGTTGG+TGG | - | chr5.1:54563949-54563968 | MS.gene43797:CDS | 50.0% | |
| TACGGACCAGTGGAGAACTT+AGG | - | chr5.1:54561942-54561961 | MS.gene43797:intron | 50.0% | |
| TAGTATGTGGTGCACGACCT+TGG | + | chr5.1:54562465-54562484 | None:intergenic | 50.0% | |
| TGATTATGGACGGGAATGGG+AGG | - | chr5.1:54559305-54559324 | MS.gene43797:CDS | 50.0% | |
| TGTGCCAGTCTGCTTCAATG+TGG | + | chr5.1:54563788-54563807 | None:intergenic | 50.0% | |
| ! | ACGACTTTACACCGGCTACA+TGG | + | chr5.1:54559366-54559385 | None:intergenic | 50.0% |
| !! | TGGCGGTAACCATTTGCTGT+TGG | - | chr5.1:54564064-54564083 | MS.gene43797:CDS | 50.0% |
| !! | TTGGTTCTGGGTCTAGCAGA+AGG | + | chr5.1:54561104-54561123 | None:intergenic | 50.0% |
| !! | TTTTCAGGATCAGGTGGACG+AGG | - | chr5.1:54559198-54559217 | MS.gene43797:CDS | 50.0% |
| AGAAATGGAGCCATTGCCGG+AGG | - | chr5.1:54559246-54559265 | MS.gene43797:CDS | 55.0% | |
| ATGGGAGGTGGGCAAAGATG+AGG | - | chr5.1:54559320-54559339 | MS.gene43797:CDS | 55.0% | |
| ATTGCCGGAGGAACTGCAAG+CGG | - | chr5.1:54559258-54559277 | MS.gene43797:CDS | 55.0% | |
| CAAACGCGTCACTATTGCCG+CGG | - | chr5.1:54559174-54559193 | MS.gene43797:CDS | 55.0% | |
| CACCTGATCCTGAAAAGCCG+CGG | + | chr5.1:54559194-54559213 | None:intergenic | 55.0% | |
| GACCCAGAACCAACTCACGT+TGG | - | chr5.1:54561111-54561130 | MS.gene43797:intron | 55.0% | |
| GACGAGGAAACTTCCGTGGA+CGG | - | chr5.1:54559214-54559233 | MS.gene43797:CDS | 55.0% | |
| GAGACCTTGGAGGAGAAAGC+AGG | - | chr5.1:54563760-54563779 | MS.gene43797:CDS | 55.0% | |
| GAGTGATCCCCCGATGAACA+TGG | + | chr5.1:54559114-54559133 | None:intergenic | 55.0% | |
| GCGGTGATTATGGACGGGAA+TGG | - | chr5.1:54559301-54559320 | MS.gene43797:CDS | 55.0% | |
| GCTGATGCCTAAGCATGTGG+CGG | - | chr5.1:54559282-54559301 | MS.gene43797:CDS | 55.0% | |
| GGAGCCACATTGAAGCAGAC+TGG | - | chr5.1:54563781-54563800 | MS.gene43797:CDS | 55.0% | |
| GGAGCTGATGCCTAAGCATG+TGG | - | chr5.1:54559279-54559298 | MS.gene43797:CDS | 55.0% | |
| GGTTACCGCCATCAATGGGT+TGG | + | chr5.1:54564055-54564074 | None:intergenic | 55.0% | |
| TATGGACGGGAATGGGAGGT+GGG | - | chr5.1:54559309-54559328 | MS.gene43797:CDS | 55.0% | |
| TGGGAGGTGGGCAAAGATGA+GGG | - | chr5.1:54559321-54559340 | MS.gene43797:CDS | 55.0% | |
| TTATGGACGGGAATGGGAGG+TGG | - | chr5.1:54559308-54559327 | MS.gene43797:CDS | 55.0% | |
| ! | CACTATTGCCGCGGCTTTTC+AGG | - | chr5.1:54559183-54559202 | MS.gene43797:CDS | 55.0% |
| !! | GAGAGGGGAGTGCTTGTCAA+GGG | + | chr5.1:54563516-54563535 | None:intergenic | 55.0% |
| !! | TGAGAGGGGAGTGCTTGTCA+AGG | + | chr5.1:54563517-54563536 | None:intergenic | 55.0% |
| !! | TTCGCTGTTGTTGGTGGCGA+TGG | - | chr5.1:54563955-54563974 | MS.gene43797:CDS | 55.0% |
| !! | TTGGTGGCGATGGTGGTTGT+GGG | - | chr5.1:54563965-54563984 | MS.gene43797:CDS | 55.0% |
| AGCTCCGCTTGCAGTTCCTC+CGG | + | chr5.1:54559265-54559284 | None:intergenic | 60.0% | |
| CGCCACCAACAACAGCGAAC+TGG | + | chr5.1:54563954-54563973 | None:intergenic | 60.0% | |
| CGCGGCAATAGTGACGCGTT+TGG | + | chr5.1:54559176-54559195 | None:intergenic | 60.0% | |
| CGGACCGAACATTATGGCCG+AGG | + | chr5.1:54564100-54564119 | None:intergenic | 60.0% | |
| GCTGAGCACCCTCTTCACCA+TGG | + | chr5.1:54564028-54564047 | None:intergenic | 60.0% | |
| GCTTGCAGTTCCTCCGGCAA+TGG | + | chr5.1:54559259-54559278 | None:intergenic | 60.0% | |
| GGAGGTGGGCAAAGATGAGG+GGG | - | chr5.1:54559323-54559342 | MS.gene43797:CDS | 60.0% | |
| GGCTCCTGCTTTCTCCTCCA+AGG | + | chr5.1:54563767-54563786 | None:intergenic | 60.0% | |
| GGGAGGTGGGCAAAGATGAG+GGG | - | chr5.1:54559322-54559341 | MS.gene43797:CDS | 60.0% | |
| GGTGGACGAGGAAACTTCCG+TGG | - | chr5.1:54559210-54559229 | MS.gene43797:CDS | 60.0% | |
| ! | TGGTGGCGATGGTGGTTGTG+GGG | - | chr5.1:54563966-54563985 | MS.gene43797:CDS | 60.0% |
| !! | CGCGGCTTTTCAGGATCAGG+TGG | - | chr5.1:54559192-54559211 | MS.gene43797:CDS | 60.0% |
| !! | GCTGTTGTTGGTGGCGATGG+TGG | - | chr5.1:54563958-54563977 | MS.gene43797:CDS | 60.0% |
| !! | GGGGAGTGCTTGTCAAGGGA+AGG | + | chr5.1:54563512-54563531 | None:intergenic | 60.0% |
| !! | GTTGGTGGCGATGGTGGTTG+TGG | - | chr5.1:54563964-54563983 | MS.gene43797:CDS | 60.0% |
| !! | TGCCGCGGCTTTTCAGGATC+AGG | - | chr5.1:54559189-54559208 | MS.gene43797:CDS | 60.0% |
| AGGGGGTTACCCCCGTCTGC+GGG | - | chr5.1:54559340-54559359 | MS.gene43797:CDS | 70.0% | |
| CCGGCTACATGGCCCGCAGA+CGG | + | chr5.1:54559355-54559374 | None:intergenic | 70.0% | |
| CCGTCTGCGGGCCATGTAGC+CGG | - | chr5.1:54559352-54559371 | MS.gene43797:CDS | 70.0% | |
| CGGCTACATGGCCCGCAGAC+GGG | + | chr5.1:54559354-54559373 | None:intergenic | 70.0% | |
| GAGGGGGTTACCCCCGTCTG+CGG | - | chr5.1:54559339-54559358 | MS.gene43797:CDS | 70.0% | |
| GCTACATGGCCCGCAGACGG+GGG | + | chr5.1:54559352-54559371 | None:intergenic | 70.0% | |
| GGCTACATGGCCCGCAGACG+GGG | + | chr5.1:54559353-54559372 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54559034 | 54564131 | 54559034 | ID=MS.gene43797 |
| chr5.1 | mRNA | 54559034 | 54564131 | 54559034 | ID=MS.gene43797.t1;Parent=MS.gene43797 |
| chr5.1 | exon | 54563691 | 54564131 | 54563691 | ID=MS.gene43797.t1.exon1;Parent=MS.gene43797.t1 |
| chr5.1 | CDS | 54563691 | 54564131 | 54563691 | ID=cds.MS.gene43797.t1;Parent=MS.gene43797.t1 |
| chr5.1 | exon | 54563515 | 54563582 | 54563515 | ID=MS.gene43797.t1.exon2;Parent=MS.gene43797.t1 |
| chr5.1 | CDS | 54563515 | 54563582 | 54563515 | ID=cds.MS.gene43797.t1;Parent=MS.gene43797.t1 |
| chr5.1 | exon | 54561201 | 54561501 | 54561201 | ID=MS.gene43797.t1.exon3;Parent=MS.gene43797.t1 |
| chr5.1 | CDS | 54561201 | 54561501 | 54561201 | ID=cds.MS.gene43797.t1;Parent=MS.gene43797.t1 |
| chr5.1 | exon | 54560464 | 54560581 | 54560464 | ID=MS.gene43797.t1.exon4;Parent=MS.gene43797.t1 |
| chr5.1 | CDS | 54560464 | 54560581 | 54560464 | ID=cds.MS.gene43797.t1;Parent=MS.gene43797.t1 |
| chr5.1 | exon | 54559034 | 54559404 | 54559034 | ID=MS.gene43797.t1.exon5;Parent=MS.gene43797.t1 |
| chr5.1 | CDS | 54559034 | 54559404 | 54559034 | ID=cds.MS.gene43797.t1;Parent=MS.gene43797.t1 |
| Gene Sequence |
| Protein sequence |
