AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43849

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43849.t1 MTR_2g095800 95.890 292 12 0 1 292 18 309 0.0 592
MS.gene43849.t1 MTR_4g057450 77.816 293 63 2 1 292 13 304 7.69e-172 478
MS.gene43849.t1 MTR_1g063020 67.474 289 92 2 4 292 8 294 4.26e-146 412
MS.gene43849.t1 MTR_7g102260 67.010 291 94 2 3 292 2 291 1.87e-145 410
MS.gene43849.t1 MTR_1g033420 41.137 299 155 7 1 292 7 291 2.62e-69 218
MS.gene43849.t1 MTR_8g064180 40.066 302 164 8 5 292 12 310 2.29e-64 204
MS.gene43849.t1 MTR_6g088320 39.179 268 143 7 36 292 25 283 3.36e-61 196
MS.gene43849.t1 MTR_4g126920 39.850 266 143 6 36 292 24 281 3.24e-59 191
MS.gene43849.t1 MTR_4g045853 36.422 313 153 8 1 292 1 288 6.94e-59 190
MS.gene43849.t1 MTR_5g029100 37.132 272 157 5 32 292 37 305 1.12e-58 191
MS.gene43849.t1 MTR_3g089540 41.418 268 132 8 36 292 29 282 1.49e-58 189
MS.gene43849.t1 MTR_5g091730 39.326 267 137 8 36 292 27 278 7.71e-58 187
MS.gene43849.t1 MTR_4g128410 37.500 296 159 8 5 292 3 280 8.45e-58 187
MS.gene43849.t1 MTR_8g090100 37.943 282 148 7 27 292 11 281 1.26e-57 187
MS.gene43849.t1 MTR_1g105495 36.486 296 170 7 8 292 6 294 9.20e-57 185
MS.gene43849.t1 MTR_7g084770 36.552 290 164 7 13 292 8 287 1.73e-56 184
MS.gene43849.t1 MTR_2g089140 36.364 275 153 5 32 292 20 286 3.67e-56 183
MS.gene43849.t1 MTR_7g093530 37.838 296 157 7 5 292 3 279 4.24e-56 182
MS.gene43849.t1 MTR_3g084630 38.971 272 146 7 29 292 18 277 1.30e-55 181
MS.gene43849.t1 MTR_3g084620 38.971 272 146 7 29 292 18 277 1.31e-55 181
MS.gene43849.t1 MTR_7g084750 36.364 297 168 9 5 292 3 287 2.04e-55 181
MS.gene43849.t1 MTR_5g029100 38.983 236 132 4 66 292 42 274 5.76e-55 181
MS.gene43849.t1 MTR_7g084760 37.687 268 147 7 35 292 30 287 8.07e-55 179
MS.gene43849.t1 MTR_8g013055 39.552 268 141 7 35 292 29 285 1.17e-54 179
MS.gene43849.t1 MTR_4g128570 39.924 263 132 8 36 292 30 272 1.37e-54 178
MS.gene43849.t1 MTR_8g081040 40.074 272 144 7 29 292 21 281 1.49e-54 179
MS.gene43849.t1 MTR_2g038860 38.519 270 145 6 36 292 25 286 7.20e-54 177
MS.gene43849.t1 MTR_2g038705 38.519 270 145 6 36 292 25 286 7.20e-54 177
MS.gene43849.t1 MTR_4g097640 35.452 299 157 11 7 292 12 287 8.22e-54 177
MS.gene43849.t1 MTR_4g097670 35.452 299 157 11 7 292 12 287 8.22e-54 177
MS.gene43849.t1 MTR_4g128580 38.662 269 145 6 36 292 25 285 1.75e-53 176
MS.gene43849.t1 MTR_8g102910 37.079 267 150 6 36 292 21 279 2.28e-53 176
MS.gene43849.t1 MTR_4g097700 37.313 268 146 9 36 292 68 324 5.02e-53 176
MS.gene43849.t1 MTR_6g033085 36.940 268 149 8 35 292 30 287 6.69e-53 174
MS.gene43849.t1 MTR_1g105900 35.766 274 158 8 29 292 26 291 6.01e-52 172
MS.gene43849.t1 MTR_6g033055 36.194 268 151 8 35 292 30 287 2.33e-51 171
MS.gene43849.t1 MTR_4g128400 37.891 256 143 6 45 292 36 283 3.29e-51 170
MS.gene43849.t1 MTR_7g056090 36.395 294 153 11 6 292 15 281 5.54e-50 167
MS.gene43849.t1 MTR_8g102220 37.500 272 138 9 29 292 19 266 4.66e-49 164
MS.gene43849.t1 MTR_2g089140 37.991 229 120 5 78 292 3 223 2.64e-48 160
MS.gene43849.t1 MTR_4g128590 36.531 271 133 9 36 292 30 275 1.46e-47 160
MS.gene43849.t1 MTR_2g049130 33.465 254 150 8 34 279 26 268 3.94e-44 152
MS.gene43849.t1 MTR_2g049030 33.333 270 153 12 32 292 25 276 3.76e-42 146
MS.gene43849.t1 MTR_8g032640 33.333 180 107 5 56 233 32 200 4.18e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43849.t1 AT2G36870 66.327 294 96 2 1 292 5 297 7.38e-144 406
MS.gene43849.t1 AT3G44990 64.384 292 99 2 5 292 3 293 4.89e-138 392
MS.gene43849.t1 AT2G36870 66.092 174 57 1 1 172 5 178 3.81e-79 238
MS.gene43849.t1 AT1G14720 39.927 273 154 4 27 292 21 290 8.24e-69 217
MS.gene43849.t1 AT1G32170 40.074 272 151 4 30 292 25 293 2.30e-65 208
MS.gene43849.t1 AT2G01850 40.977 266 143 5 36 292 30 290 1.03e-64 206
MS.gene43849.t1 AT1G10550 35.971 278 161 3 29 292 35 309 1.71e-62 200
MS.gene43849.t1 AT4G18990 38.652 282 148 5 32 292 35 312 5.98e-62 200
MS.gene43849.t1 AT3G25050 37.736 265 150 4 35 292 33 289 2.30e-61 196
MS.gene43849.t1 AT3G23730 40.892 269 139 8 36 292 26 286 2.74e-60 194
MS.gene43849.t1 AT4G14130 41.791 268 135 8 36 292 27 284 7.69e-60 192
MS.gene43849.t1 AT1G11545 37.908 306 156 10 1 292 14 299 8.79e-60 193
MS.gene43849.t1 AT4G03210 35.644 303 157 7 4 292 6 284 1.26e-59 192
MS.gene43849.t1 AT5G57550 40.784 255 135 7 36 284 29 273 2.18e-59 191
MS.gene43849.t1 AT5G57560 39.259 270 145 8 34 292 20 281 7.75e-58 187
MS.gene43849.t1 AT4G25810 38.538 301 146 11 4 292 10 283 1.04e-57 187
MS.gene43849.t1 AT5G57530 40.809 272 139 9 32 292 22 282 8.53e-57 184
MS.gene43849.t1 AT4G13090 39.925 268 144 6 34 292 29 288 1.17e-56 184
MS.gene43849.t1 AT4G37800 36.149 296 164 7 6 292 10 289 4.78e-55 180
MS.gene43849.t1 AT4G13080 38.577 267 147 8 33 292 35 291 8.93e-55 179
MS.gene43849.t1 AT4G30270 37.984 258 135 7 32 284 19 256 1.67e-54 178
MS.gene43849.t1 AT5G57540 41.045 268 136 9 36 292 25 281 1.75e-54 178
MS.gene43849.t1 AT5G13870 35.811 296 166 9 6 292 7 287 1.77e-54 179
MS.gene43849.t1 AT5G13870 35.811 296 166 9 6 292 7 287 1.77e-54 179
MS.gene43849.t1 AT5G13870 35.811 296 166 9 6 292 7 287 1.77e-54 179
MS.gene43849.t1 AT5G65730 38.258 264 149 6 36 292 34 290 2.46e-54 178
MS.gene43849.t1 AT5G48070 38.603 272 146 10 30 292 22 281 6.77e-54 177
MS.gene43849.t1 AT2G06850 36.861 274 155 7 28 292 26 290 3.62e-53 176
MS.gene43849.t1 AT4G28850 35.075 268 153 8 37 292 29 287 2.53e-52 173
MS.gene43849.t1 AT1G65310 40.000 265 140 8 36 292 28 281 2.59e-52 173
MS.gene43849.t1 AT1G65310 40.000 265 140 8 36 292 50 303 4.87e-52 173
MS.gene43849.t1 AT4G03210 38.333 240 120 6 67 292 31 256 9.00e-52 171
MS.gene43849.t1 AT2G18800 36.462 277 147 9 37 292 28 296 9.42e-52 172
MS.gene43849.t1 AT4G25820 39.852 271 141 9 33 292 26 285 2.08e-51 171
MS.gene43849.t1 AT4G30290 40.693 231 123 6 66 292 56 276 2.79e-51 170
MS.gene43849.t1 AT2G14620 34.228 298 167 9 5 292 16 294 2.18e-50 168
MS.gene43849.t1 AT4G30280 39.216 255 139 5 36 284 28 272 4.29e-50 167
MS.gene43849.t1 AT2G06850 38.723 235 128 6 65 292 5 230 8.24e-50 165
MS.gene43849.t1 AT4G18990 39.631 217 108 4 95 292 26 238 1.92e-48 163
MS.gene43849.t1 AT2G14620 36.596 235 133 7 66 292 18 244 1.60e-45 154
MS.gene43849.t1 AT2G14620 37.220 223 124 7 78 292 19 233 3.64e-43 148
MS.gene43849.t1 AT3G48580 33.206 262 151 8 35 292 32 273 2.22e-40 142
MS.gene43849.t1 AT3G48580 34.199 231 129 7 65 292 4 214 3.06e-37 132
MS.gene43849.t1 AT3G48580 29.389 262 141 9 35 292 32 253 7.50e-25 100

Find 73 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTACAAATCTGGATATTT+TGG 0.149428 2.2:-6120727 MS.gene43849:CDS
CATAGACCAAGTAATTATTT+TGG 0.207651 2.2:+6119262 None:intergenic
TTCCTAGGATACCTCCTTAT+TGG 0.217615 2.2:+6119534 None:intergenic
ATCAAGAATTTAGAAATCTA+TGG 0.228439 2.2:-6121253 MS.gene43849:CDS
GAGAGATGAGATTTCATCTT+TGG 0.246832 2.2:-6120417 MS.gene43849:CDS
TTCACAACTATGCCATTCTA+TGG 0.276482 2.2:-6120375 MS.gene43849:CDS
CGAACTAAACCTTAGCATTC+TGG 0.321947 2.2:+6119201 None:intergenic
AGTGGAGATGGGAAGATCAT+AGG 0.350619 2.2:-6120442 MS.gene43849:CDS
TATACTTACCAACCCTTCAT+TGG 0.351915 2.2:-6119414 MS.gene43849:CDS
GTAAGTGCATGGTCTCTCTT+AGG 0.376321 2.2:+6119225 None:intergenic
GCAATACATATGGCTTATCT+TGG 0.380400 2.2:+6120488 None:intergenic
TCATATCACTCTTACAAATC+TGG 0.381593 2.2:-6120736 MS.gene43849:CDS
ATGATTTGTATTAGTAATGC+TGG 0.382697 2.2:-6121332 MS.gene43849:CDS
TAGTGGATGATGTTCCAATA+AGG 0.386035 2.2:-6119548 MS.gene43849:CDS
GCTCAGCTTGCCGCCATAGC+CGG 0.389428 2.2:+6119314 None:intergenic
CAGACAAATGTGTACATTAG+AGG 0.390267 2.2:-6120466 MS.gene43849:CDS
ACATTTGTCTGCAATACATA+TGG 0.397108 2.2:+6120478 None:intergenic
CTCAGCTTGCCGCCATAGCC+GGG 0.408183 2.2:+6119315 None:intergenic
ACCATGAATCATTATCAATC+TGG 0.433994 2.2:-6121208 MS.gene43849:CDS
GCCAGATTGATAATGATTCA+TGG 0.436574 2.2:+6121207 None:intergenic
ATACTTACCAACCCTTCATT+GGG 0.448591 2.2:-6119413 MS.gene43849:CDS
CTCACTAGGTTTCCATAGAA+TGG 0.448681 2.2:+6120363 None:intergenic
TGATTTGTATTAGTAATGCT+GGG 0.449518 2.2:-6121331 MS.gene43849:CDS
TCTGTCTCACCTCCCGGCTA+TGG 0.450760 2.2:-6119327 MS.gene43849:CDS
TCAAGACCAATGTATGTGTA+TGG 0.458346 2.2:-6119492 MS.gene43849:CDS
ACATTAGAGGAAGTGGAGAT+GGG 0.459120 2.2:-6120453 MS.gene43849:CDS
AGCAAAATGTTGCAATGCAA+TGG 0.460888 2.2:-6119287 MS.gene43849:CDS
TACACATACATTGGTCTTGA+AGG 0.461246 2.2:+6119495 None:intergenic
TCTGCATGGGCTACAGAGAA+TGG 0.467528 2.2:-6119453 MS.gene43849:CDS
TCAAGAATTTAGAAATCTAT+GGG 0.469409 2.2:-6121252 MS.gene43849:CDS
TACATTAGAGGAAGTGGAGA+TGG 0.475103 2.2:-6120454 MS.gene43849:CDS
AATGTTGCATCACTCTTCCT+AGG 0.480500 2.2:+6119519 None:intergenic
AATGTGTACATTAGAGGAAG+TGG 0.491430 2.2:-6120460 MS.gene43849:CDS
AGGCGGACGGCATGAGGAGG+TGG 0.495521 2.2:+6119350 None:intergenic
GAAATAGACATTGAGTTCCT+TGG 0.499774 2.2:-6120517 MS.gene43849:CDS
ATCTGGCTTGACTCTACCTC+AGG 0.501094 2.2:-6121191 MS.gene43849:intron
ACTCAATGTCTATTTCATCA+TGG 0.503835 2.2:+6120524 None:intergenic
GCAAAATGTTGCAATGCAAT+GGG 0.506732 2.2:-6119286 MS.gene43849:CDS
CAATACATATGGCTTATCTT+GGG 0.512542 2.2:+6120489 None:intergenic
TTCCAATAAGGAGGTATCCT+AGG 0.523994 2.2:-6119536 MS.gene43849:CDS
CCGCCTTCTGTCTCACCTCC+CGG 0.526126 2.2:-6119333 MS.gene43849:CDS
TGTATCTCCCAATGAAGGGT+TGG 0.527457 2.2:+6119406 None:intergenic
CAATCTGGGATGCATCTGCA+TGG 0.536057 2.2:-6119467 MS.gene43849:CDS
ATGGGTCCAAAATAATTACT+TGG 0.539014 2.2:-6119268 MS.gene43849:CDS
TGTATGTGTATGGATCAATC+TGG 0.542899 2.2:-6119482 MS.gene43849:CDS
CTTCAACCAGGTTATACTGC+AGG 0.542998 2.2:-6120691 MS.gene43849:CDS
ATATATTACATGATCTCACT+AGG 0.561356 2.2:+6120349 None:intergenic
GAGAAGAAAAGAGAGAAGAG+AGG 0.561549 2.2:+6121359 None:intergenic
ACACATACATTGGTCTTGAA+GGG 0.561915 2.2:+6119496 None:intergenic
GCACTTACTCCAGAATGCTA+AGG 0.580492 2.2:-6119210 None:intergenic
GTCTCACCTCCCGGCTATGG+CGG 0.581515 2.2:-6119324 MS.gene43849:CDS
GACAGAAGGCGGACGGCATG+AGG 0.589748 2.2:+6119344 None:intergenic
CTAGGATAGTACCCTGGTGA+AGG 0.596166 2.2:+6121302 None:intergenic
AGAAGGCGGACGGCATGAGG+AGG 0.599752 2.2:+6119347 None:intergenic
ATTGATCCATACACATACAT+TGG 0.600084 2.2:+6119486 None:intergenic
TTGACTCCTGCAGTATAACC+TGG 0.602424 2.2:+6120685 None:intergenic
TAGTTGTGAAAATCTTGTGT+TGG 0.603177 2.2:+6120388 None:intergenic
TAGCCGGGAGGTGAGACAGA+AGG 0.606757 2.2:+6119330 None:intergenic
AATCTGGGATGCATCTGCAT+GGG 0.616394 2.2:-6119466 MS.gene43849:CDS
GCATGAGGAGGTGGAATCAG+TGG 0.618556 2.2:+6119359 None:intergenic
AGCATTCTGGAGTAAGTGCA+TGG 0.624643 2.2:+6119214 None:intergenic
AGCTTGCCGCCATAGCCGGG+AGG 0.627847 2.2:+6119318 None:intergenic
GATTTGTATTAGTAATGCTG+GGG 0.636926 2.2:-6121330 MS.gene43849:CDS
GTATGTGTATGGATCAATCT+GGG 0.642889 2.2:-6119481 MS.gene43849:CDS
TGGATGATGTTCCAATAAGG+AGG 0.647078 2.2:-6119545 MS.gene43849:CDS
GAGGTGAGACAGAAGGCGGA+CGG 0.648616 2.2:+6119337 None:intergenic
ACTGCGGTTAAGCTTCAACC+AGG 0.650106 2.2:-6120703 MS.gene43849:CDS
GCTTATCTTGGGTAGTACCA+AGG 0.651953 2.2:+6120500 None:intergenic
CCGGGAGGTGAGACAGAAGG+CGG 0.677362 2.2:+6119333 None:intergenic
TTAGAACTAGGATAGTACCC+TGG 0.696164 2.2:+6121296 None:intergenic
CAAGAATTTAGAAATCTATG+GGG 0.710687 2.2:-6121251 MS.gene43849:CDS
TCAAACATCGAAGATCACAA+AGG 0.711833 2.2:-6120550 MS.gene43849:CDS
ATTTGTATTAGTAATGCTGG+GGG 0.723446 2.2:-6121329 MS.gene43849:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTAATTCAAATTATA+AGG + chr2.2:6119941-6119960 None:intergenic 10.0%
!! GATATTAATTTCATTTAATT+TGG - chr2.2:6119992-6120011 MS.gene43849:intron 10.0%
!!! AATCTATTATTATTTTAGTA+TGG - chr2.2:6119768-6119787 MS.gene43849:intron 10.0%
!!! ATGTTTTAAAATAGTAAAAT+TGG + chr2.2:6120485-6120504 None:intergenic 10.0%
!!! ATTTTTAATAAAAACTGTTT+TGG + chr2.2:6120396-6120415 None:intergenic 10.0%
!! AATAAATAAAGAATCACATT+TGG + chr2.2:6119605-6119624 None:intergenic 15.0%
!! ATGAGTATATATATTATAAG+AGG + chr2.2:6120912-6120931 None:intergenic 15.0%
!! TGAGTATATATATTATAAGA+GGG + chr2.2:6120911-6120930 None:intergenic 15.0%
!!! ATAAAAATGATCTTTTTGAT+AGG + chr2.2:6120870-6120889 None:intergenic 15.0%
!!! TTATATATACAGATTTTTAG+TGG - chr2.2:6121012-6121031 MS.gene43849:intron 15.0%
!!! TTGATCTTTTTATTTCTATT+CGG + chr2.2:6120329-6120348 None:intergenic 15.0%
!!! TTTAGAATATATTATTTCTG+AGG + chr2.2:6120654-6120673 None:intergenic 15.0%
!! AAATAAACTAAAATCTCAAG+CGG - chr2.2:6119639-6119658 MS.gene43849:intron 20.0%
!! ATCAAGAATTTAGAAATCTA+TGG - chr2.2:6119324-6119343 MS.gene43849:CDS 20.0%
!! TCAAGAATTTAGAAATCTAT+GGG - chr2.2:6119325-6119344 MS.gene43849:CDS 20.0%
!! TCAATACAAATTTATATGTG+AGG - chr2.2:6119911-6119930 MS.gene43849:intron 20.0%
!! TCAATATTCTATGTTTAGTA+AGG - chr2.2:6120701-6120720 MS.gene43849:CDS 20.0%
!! TTTCTCAAATCATATTAGAT+AGG + chr2.2:6119703-6119722 None:intergenic 20.0%
!!! GTTAAATATTTTATTCCAAG+AGG - chr2.2:6120777-6120796 MS.gene43849:intron 20.0%
! ATATATTACATGATCTCACT+AGG + chr2.2:6120231-6120250 None:intergenic 25.0%
! ATTTCTCTATACCTATTAGT+AGG + chr2.2:6120826-6120845 None:intergenic 25.0%
! CAAGAATTTAGAAATCTATG+GGG - chr2.2:6119326-6119345 MS.gene43849:CDS 25.0%
! TACAAAAACTTCAAACTACA+AGG - chr2.2:6121190-6121209 MS.gene43849:intron 25.0%
! TTATGTATGACACTTCATTT+AGG + chr2.2:6119451-6119470 None:intergenic 25.0%
! TTTCTCTATACCTATTAGTA+GGG + chr2.2:6120825-6120844 None:intergenic 25.0%
!! ATGATTTGTATTAGTAATGC+TGG - chr2.2:6119245-6119264 MS.gene43849:CDS 25.0%
!! CATAGACCAAGTAATTATTT+TGG + chr2.2:6121318-6121337 None:intergenic 25.0%
!! TAGTTCAATTTGTTCAACTA+CGG - chr2.2:6120298-6120317 MS.gene43849:intron 25.0%
!! TCTTACAAATCTGGATATTT+TGG - chr2.2:6119850-6119869 MS.gene43849:intron 25.0%
!! TGATTTGTATTAGTAATGCT+GGG - chr2.2:6119246-6119265 MS.gene43849:CDS 25.0%
!! TTACTAATTTTCAGTTCGAT+TGG - chr2.2:6120569-6120588 MS.gene43849:intron 25.0%
!!! ATAGTGCTTATTTTAGAACT+AGG + chr2.2:6119296-6119315 None:intergenic 25.0%
!!! TTTTATTTAAAAGCCACATG+TGG - chr2.2:6120884-6120903 MS.gene43849:intron 25.0%
ACATTTGTCTGCAATACATA+TGG + chr2.2:6120102-6120121 None:intergenic 30.0%
ACCATGAATCATTATCAATC+TGG - chr2.2:6119369-6119388 MS.gene43849:CDS 30.0%
ACTCAATGTCTATTTCATCA+TGG + chr2.2:6120056-6120075 None:intergenic 30.0%
ATAGGTATAGAGAAATGATG+AGG - chr2.2:6120830-6120849 MS.gene43849:intron 30.0%
ATGGGTCCAAAATAATTACT+TGG - chr2.2:6121309-6121328 MS.gene43849:CDS 30.0%
ATTGATCCATACACATACAT+TGG + chr2.2:6121094-6121113 None:intergenic 30.0%
ATTTGTATTAGTAATGCTGG+GGG - chr2.2:6119248-6119267 MS.gene43849:CDS 30.0%
CAAATTGAACTATGATCTGT+TGG + chr2.2:6120290-6120309 None:intergenic 30.0%
CAATACATATGGCTTATCTT+GGG + chr2.2:6120091-6120110 None:intergenic 30.0%
GATTTGTATTAGTAATGCTG+GGG - chr2.2:6119247-6119266 MS.gene43849:CDS 30.0%
GCAAAAGTAAACAAAGAACT+AGG - chr2.2:6120527-6120546 MS.gene43849:CDS 30.0%
TAGTTGTGAAAATCTTGTGT+TGG + chr2.2:6120192-6120211 None:intergenic 30.0%
TCATATCACTCTTACAAATC+TGG - chr2.2:6119841-6119860 MS.gene43849:intron 30.0%
! ATTTTCCATACCCTACTAAT+AGG - chr2.2:6120812-6120831 MS.gene43849:intron 30.0%
! CATTTGATTTCATATACCTG+AGG + chr2.2:6119405-6119424 None:intergenic 30.0%
! GTGATTGATTGATAGCTATA+TGG + chr2.2:6120751-6120770 None:intergenic 30.0%
! TTTTTGTATCTCCCAATGAA+GGG + chr2.2:6121178-6121197 None:intergenic 30.0%
AAAACTAGACTGAGTCTGAA+AGG + chr2.2:6120609-6120628 None:intergenic 35.0%
AAGCATTTCTTTGCAACACA+GGG - chr2.2:6119806-6119825 MS.gene43849:intron 35.0%
AATGTGTACATTAGAGGAAG+TGG - chr2.2:6120117-6120136 MS.gene43849:intron 35.0%
AATTAAACACTCTTGCCTCT+TGG + chr2.2:6120795-6120814 None:intergenic 35.0%
ACACTTCATTTAGGTGAACT+TGG + chr2.2:6119442-6119461 None:intergenic 35.0%
AGCAAAATGTTGCAATGCAA+TGG - chr2.2:6121290-6121309 MS.gene43849:CDS 35.0%
ATACTTACCAACCCTTCATT+GGG - chr2.2:6121164-6121183 MS.gene43849:intron 35.0%
CACTTCATTTAGGTGAACTT+GGG + chr2.2:6119441-6119460 None:intergenic 35.0%
CAGACAAATGTGTACATTAG+AGG - chr2.2:6120111-6120130 MS.gene43849:intron 35.0%
CTATACCTATTAGTAGGGTA+TGG + chr2.2:6120820-6120839 None:intergenic 35.0%
GAAATAGACATTGAGTTCCT+TGG - chr2.2:6120060-6120079 MS.gene43849:intron 35.0%
GAGAGATGAGATTTCATCTT+TGG - chr2.2:6120160-6120179 MS.gene43849:intron 35.0%
GCAAAATGTTGCAATGCAAT+GGG - chr2.2:6121291-6121310 MS.gene43849:CDS 35.0%
GCAATACATATGGCTTATCT+TGG + chr2.2:6120092-6120111 None:intergenic 35.0%
GCTATCAATCAATCACTGTT+TGG - chr2.2:6120755-6120774 MS.gene43849:intron 35.0%
GTATGTGTATGGATCAATCT+GGG - chr2.2:6121096-6121115 MS.gene43849:intron 35.0%
TAAGCATTTCTTTGCAACAC+AGG - chr2.2:6119805-6119824 MS.gene43849:intron 35.0%
TATACTTACCAACCCTTCAT+TGG - chr2.2:6121163-6121182 MS.gene43849:intron 35.0%
TCAAACATCGAAGATCACAA+AGG - chr2.2:6120027-6120046 MS.gene43849:intron 35.0%
TCAAGACCAATGTATGTGTA+TGG - chr2.2:6121085-6121104 MS.gene43849:intron 35.0%
TGTATGTGTATGGATCAATC+TGG - chr2.2:6121095-6121114 MS.gene43849:intron 35.0%
TTCACAACTATGCCATTCTA+TGG - chr2.2:6120202-6120221 MS.gene43849:intron 35.0%
! GTTTTTGTATCTCCCAATGA+AGG + chr2.2:6121179-6121198 None:intergenic 35.0%
! TAGTGGATGATGTTCCAATA+AGG - chr2.2:6121029-6121048 MS.gene43849:intron 35.0%
!! ACACATACATTGGTCTTGAA+GGG + chr2.2:6121084-6121103 None:intergenic 35.0%
!! GCCAGATTGATAATGATTCA+TGG + chr2.2:6119373-6119392 None:intergenic 35.0%
!! TACACATACATTGGTCTTGA+AGG + chr2.2:6121085-6121104 None:intergenic 35.0%
!!! ATCTGGATATTTTGGTACTG+CGG - chr2.2:6119858-6119877 MS.gene43849:intron 35.0%
AATGTTGCATCACTCTTCCT+AGG + chr2.2:6121061-6121080 None:intergenic 40.0%
ACAAACCAGTTAAACCAACC+TGG - chr2.2:6120416-6120435 MS.gene43849:CDS 40.0%
ACATTAGAGGAAGTGGAGAT+GGG - chr2.2:6120124-6120143 MS.gene43849:intron 40.0%
ATTATAAGAGGGACCACATG+TGG + chr2.2:6120900-6120919 None:intergenic 40.0%
CATCAGGCTACATTAGAACT+AGG - chr2.2:6120452-6120471 MS.gene43849:CDS 40.0%
CTCACTAGGTTTCCATAGAA+TGG + chr2.2:6120217-6120236 None:intergenic 40.0%
GAGAAGAAAAGAGAGAAGAG+AGG + chr2.2:6119221-6119240 None:intergenic 40.0%
TAAACCAACCTGGTTGAGAA+TGG - chr2.2:6120426-6120445 MS.gene43849:CDS 40.0%
TACATTAGAGGAAGTGGAGA+TGG - chr2.2:6120123-6120142 MS.gene43849:intron 40.0%
TAGCGTGCTGAATTGCTTTA+TGG - chr2.2:6120988-6121007 MS.gene43849:intron 40.0%
TGGATGATGTTCCAATAAGG+AGG - chr2.2:6121032-6121051 MS.gene43849:intron 40.0%
TTAGAACTAGGATAGTACCC+TGG + chr2.2:6119284-6119303 None:intergenic 40.0%
TTCCTAGGATACCTCCTTAT+TGG + chr2.2:6121046-6121065 None:intergenic 40.0%
! GCATTGCAACATTTTGCTGA+CGG + chr2.2:6121288-6121307 None:intergenic 40.0%
!! CTAGTTCTAATGTAGCCTGA+TGG + chr2.2:6120454-6120473 None:intergenic 40.0%
!! TTCCAATAAGGAGGTATCCT+AGG - chr2.2:6121041-6121060 MS.gene43849:intron 40.0%
AGTGGAGATGGGAAGATCAT+AGG - chr2.2:6120135-6120154 MS.gene43849:intron 45.0%
CTGAGTCTGAAAGGATCGAT+CGG + chr2.2:6120600-6120619 None:intergenic 45.0%
CTTCAACCAGGTTATACTGC+AGG - chr2.2:6119886-6119905 MS.gene43849:intron 45.0%
GCTTATCTTGGGTAGTACCA+AGG + chr2.2:6120080-6120099 None:intergenic 45.0%
GTAAGTGCATGGTCTCTCTT+AGG + chr2.2:6121355-6121374 None:intergenic 45.0%
TGATGGAACCATTCTCAACC+AGG + chr2.2:6120437-6120456 None:intergenic 45.0%
TGGTTGAGAATGGTTCCATC+AGG - chr2.2:6120436-6120455 MS.gene43849:CDS 45.0%
TGTATCTCCCAATGAAGGGT+TGG + chr2.2:6121174-6121193 None:intergenic 45.0%
TTGACTCCTGCAGTATAACC+TGG + chr2.2:6119895-6119914 None:intergenic 45.0%
TTTCTTTGCAACACAGGGAG+TGG - chr2.2:6119811-6119830 MS.gene43849:intron 45.0%
! AATCTGGGATGCATCTGCAT+GGG - chr2.2:6121111-6121130 MS.gene43849:intron 45.0%
!! AGCATTCTGGAGTAAGTGCA+TGG + chr2.2:6121366-6121385 None:intergenic 45.0%
!! CTCAACCAGGTTGGTTTAAC+TGG + chr2.2:6120424-6120443 None:intergenic 45.0%
!!! ATATTAATTTCATTTAATTT+GGG - chr2.2:6119993-6120012 MS.gene43849:intron 5.0%
ACTGCGGTTAAGCTTCAACC+AGG - chr2.2:6119874-6119893 MS.gene43849:intron 50.0%
CTAGGATAGTACCCTGGTGA+AGG + chr2.2:6119278-6119297 None:intergenic 50.0%
GGAACCATTCTCAACCAGGT+TGG + chr2.2:6120433-6120452 None:intergenic 50.0%
! ATCTGGCTTGACTCTACCTC+AGG - chr2.2:6119386-6119405 MS.gene43849:CDS 50.0%
! CAATCTGGGATGCATCTGCA+TGG - chr2.2:6121110-6121129 MS.gene43849:intron 50.0%
! TCTGCATGGGCTACAGAGAA+TGG - chr2.2:6121124-6121143 MS.gene43849:intron 50.0%
GCATGAGGAGGTGGAATCAG+TGG + chr2.2:6121221-6121240 None:intergenic 55.0%
GAGGTGAGACAGAAGGCGGA+CGG + chr2.2:6121243-6121262 None:intergenic 60.0%
TAGCCGGGAGGTGAGACAGA+AGG + chr2.2:6121250-6121269 None:intergenic 60.0%
TCTGTCTCACCTCCCGGCTA+TGG - chr2.2:6121250-6121269 MS.gene43849:CDS 60.0%
AGAAGGCGGACGGCATGAGG+AGG + chr2.2:6121233-6121252 None:intergenic 65.0%
CCGCCTTCTGTCTCACCTCC+CGG - chr2.2:6121244-6121263 MS.gene43849:CDS 65.0%
CCGGGAGGTGAGACAGAAGG+CGG + chr2.2:6121247-6121266 None:intergenic 65.0%
CTCAGCTTGCCGCCATAGCC+GGG + chr2.2:6121265-6121284 None:intergenic 65.0%
GACAGAAGGCGGACGGCATG+AGG + chr2.2:6121236-6121255 None:intergenic 65.0%
GCTCAGCTTGCCGCCATAGC+CGG + chr2.2:6121266-6121285 None:intergenic 65.0%
GTCTCACCTCCCGGCTATGG+CGG - chr2.2:6121253-6121272 MS.gene43849:CDS 65.0%
! CTGGGGGTGCACCTTCACCA+GGG - chr2.2:6119264-6119283 MS.gene43849:CDS 65.0%
AGCTTGCCGCCATAGCCGGG+AGG + chr2.2:6121262-6121281 None:intergenic 70.0%
AGGCGGACGGCATGAGGAGG+TGG + chr2.2:6121230-6121249 None:intergenic 70.0%
! GCTGGGGGTGCACCTTCACC+AGG - chr2.2:6119263-6119282 MS.gene43849:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 6119212 6121387 6119212 ID=MS.gene43849
chr2.2 mRNA 6119212 6121387 6119212 ID=MS.gene43849.t1;Parent=MS.gene43849
chr2.2 exon 6121192 6121387 6121192 ID=MS.gene43849.t1.exon1;Parent=MS.gene43849.t1
chr2.2 CDS 6121192 6121387 6121192 ID=cds.MS.gene43849.t1;Parent=MS.gene43849.t1
chr2.2 exon 6120672 6120772 6120672 ID=MS.gene43849.t1.exon2;Parent=MS.gene43849.t1
chr2.2 CDS 6120672 6120772 6120672 ID=cds.MS.gene43849.t1;Parent=MS.gene43849.t1
chr2.2 exon 6120358 6120575 6120358 ID=MS.gene43849.t1.exon3;Parent=MS.gene43849.t1
chr2.2 CDS 6120358 6120575 6120358 ID=cds.MS.gene43849.t1;Parent=MS.gene43849.t1
chr2.2 exon 6119212 6119575 6119212 ID=MS.gene43849.t1.exon4;Parent=MS.gene43849.t1
chr2.2 CDS 6119212 6119575 6119212 ID=cds.MS.gene43849.t1;Parent=MS.gene43849.t1
Gene Sequence

>MS.gene43849

ATGGCTCCTCTCTTCTCTCTTTTCTTCTCATTCATGATTTGTATTAGTAATGCTGGGGGTGCACCTTCACCAGGGTACTATCCTAGTTCTAAAATAAGCACTATTAGCTTTGATCAAGAATTTAGAAATCTATGGGGAGCTCAGCATCAGAAACTAGACCATGAATCATTATCAATCTGGCTTGACTCTACCTCAGGTATATGAAATCAAATGTCTCAAATCATCTCCCAAGTTCACCTAAATGAAGTGTCATACATAATCATTAACTCGAAAAATAACTCTTGAAATTTCAAGCATTTCATAATTTGTTGCATGTGTACATAAATTTTGTTACAATTTTAATTTATTTCATCTTTGCACTATATAATACTCTTCTCAATTTTAGATGAGCCAAATGTGATTCTTTATTTATTTGTTATTGTAATCTAAATAAACTAAAATCTCAAGCGGTTAAAACTCTTGATGAAGTACTTCGTCTCACACGTGTTCCTATCTAATATGATTTGAGAAATTAGTCTCTGCGACTACGTACATAGTACATAAAATATAATGCAAAAATCTATTATTATTTTAGTATGGATTCTTATTACTTCTAAGCATTTCTTTGCAACACAGGGAGTGGATTCAAGTCATATCACTCTTACAAATCTGGATATTTTGGTACTGCGGTTAAGCTTCAACCAGGTTATACTGCAGGAGTCAATACAAATTTATATGTGAGGATTACCTTATAATTTGAATTAATGTTTAAAATTGACTGTATATTACGTTTTTTGTGTTGATATTAATTTCATTTAATTTGGGAATTGTAGCTTTCAAACATCGAAGATCACAAAGGAAACCATGATGAAATAGACATTGAGTTCCTTGGTACTACCCAAGATAAGCCATATGTATTGCAGACAAATGTGTACATTAGAGGAAGTGGAGATGGGAAGATCATAGGAAGAGAGATGAGATTTCATCTTTGGTTCGATCCAACACAAGATTTTCACAACTATGCCATTCTATGGAAACCTAGTGAGATCATGTAATATATTTTCATACACTATTCTACAATGTTTTAAAATCTAGACCAACAGATCATAGTTCAATTTGTTCAACTACGGTTAAACCGAATAGAAATAAAAAGATCAAAAGTTTTTTTTTTTTGACAAAAGATCAAAAGTATTTAAAAAGTACCAAAACAGTTTTTATTAAAAATACAAACCAGTTAAACCAACCTGGTTGAGAATGGTTCCATCAGGCTACATTAGAACTAGGATTAAATCCAATTTTACTATTTTAAAACATATTTGAGTTTTTATATTCTAAAGCAAAAGTAAACAAAGAACTAGGATTAATTCGATCAATGAAGTTACTAATTTTCAGTTCGATTGGTTGAACCGATCGATCCTTTCAGACTCAGTCTAGTTTTTAAAACATTGTTATAGCAAGATCCTCAGAAATAATATATTCTAAATATAAATATGACTTTATTTTGTTTGTGTCAATATTCTATGTTTAGTAAGGATCAACAAGTCAACAATCATTTAGCCATATAGCTATCAATCAATCACTGTTTGGTTAAATATTTTATTCCAAGAGGCAAGAGTGTTTAATTTTCCATACCCTACTAATAGGTATAGAGAAATGATGAGGTGCTAGAAAATATTCCTATCAAAAAGATCATTTTTATTTAAAAGCCACATGTGGTCCCTCTTATAATATATATACTCATTAACATTATAATGTCATGTTTATTAAAAAACAAAGCATATAGCTATTTTTTTTTGTTAGCGTGCTGAATTGCTTTATGGTTTATATATACAGATTTTTAGTGGATGATGTTCCAATAAGGAGGTATCCTAGGAAGAGTGATGCAACATTCCCTTCAAGACCAATGTATGTGTATGGATCAATCTGGGATGCATCTGCATGGGCTACAGAGAATGGAAAATACAAAGCAAATTATACTTACCAACCCTTCATTGGGAGATACAAAAACTTCAAACTACAAGGTTGTACCACTGATTCCACCTCCTCATGCCGTCCGCCTTCTGTCTCACCTCCCGGCTATGGCGGCAAGCTGAGCCGTCAGCAAAATGTTGCAATGCAATGGGTCCAAAATAATTACTTGGTCTATGATTATTGTCATGATCCTAAGAGAGACCATGCACTTACTCCAGAATGCTAA
Protein sequence

>MS.gene43849.t1

MAPLFSLFFSFMICISNAGGAPSPGYYPSSKISTISFDQEFRNLWGAQHQKLDHESLSIWLDSTSGSGFKSYHSYKSGYFGTAVKLQPGYTAGVNTNLYLSNIEDHKGNHDEIDIEFLGTTQDKPYVLQTNVYIRGSGDGKIIGREMRFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATFPSRPMYVYGSIWDASAWATENGKYKANYTYQPFIGRYKNFKLQGCTTDSTSSCRPPSVSPPGYGGKLSRQQNVAMQWVQNNYLVYDYCHDPKRDHALTPEC