Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44405.t1 | XP_003625145.2 | 98.1 | 784 | 15 | 0 | 6 | 789 | 1 | 784 | 0.00E+00 | 1563.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44405.t1 | O81644 | 76.7 | 774 | 176 | 3 | 9 | 782 | 2 | 771 | 0.0e+00 | 1263.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44405.t1 | G7KTI5 | 98.1 | 784 | 15 | 0 | 6 | 789 | 1 | 784 | 0.0e+00 | 1563.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059028 | MS.gene44405 | 0.866 | 3.92E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70078 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene37081 | PPI |
| MS.gene82765 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene055991 | PPI |
| MS.gene034501 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene000108 | PPI |
| MS.gene44405 | MS.gene70072 | PPI |
| MS.gene44405 | MS.gene037502 | PPI |
| MS.gene45491 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene053110 | PPI |
| MS.gene44405 | MS.gene70077 | PPI |
| MS.gene44405 | MS.gene057833 | PPI |
| MS.gene017992 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene057841 | PPI |
| MS.gene44405 | MS.gene37274 | PPI |
| MS.gene44405 | MS.gene04628 | PPI |
| MS.gene057838 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene032698 | PPI |
| MS.gene31154 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene30959 | PPI |
| MS.gene45493 | MS.gene44405 | PPI |
| MS.gene44405 | MS.gene052120 | PPI |
| MS.gene44405 | MS.gene52664 | PPI |
| MS.gene44405 | MS.gene49850 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44405.t1 | MTR_7g091460 | 98.087 | 784 | 15 | 0 | 6 | 789 | 1 | 784 | 0.0 | 1607 |
| MS.gene44405.t1 | MTR_4g127660 | 51.958 | 766 | 354 | 6 | 6 | 769 | 1 | 754 | 0.0 | 833 |
| MS.gene44405.t1 | MTR_2g036860 | 51.697 | 766 | 352 | 7 | 6 | 768 | 1 | 751 | 0.0 | 810 |
| MS.gene44405.t1 | MTR_3g463530 | 43.478 | 759 | 415 | 9 | 6 | 762 | 1 | 747 | 0.0 | 639 |
| MS.gene44405.t1 | MTR_3g463530 | 43.478 | 759 | 415 | 9 | 6 | 762 | 1 | 747 | 0.0 | 638 |
| MS.gene44405.t1 | MTR_3g463530 | 43.562 | 730 | 400 | 8 | 6 | 733 | 1 | 720 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44405.t1 | AT2G41740 | 76.744 | 774 | 176 | 3 | 9 | 782 | 2 | 771 | 0.0 | 1281 |
| MS.gene44405.t1 | AT2G41740 | 76.744 | 774 | 176 | 3 | 9 | 782 | 2 | 771 | 0.0 | 1281 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 74.536 | 809 | 170 | 3 | 6 | 780 | 1 | 807 | 0.0 | 1265 |
| MS.gene44405.t1 | AT3G57410 | 77.041 | 784 | 176 | 3 | 6 | 789 | 1 | 780 | 0.0 | 1261 |
| MS.gene44405.t1 | AT3G57410 | 78.404 | 727 | 155 | 2 | 6 | 732 | 1 | 725 | 0.0 | 1211 |
| MS.gene44405.t1 | AT4G30160 | 52.734 | 768 | 348 | 7 | 6 | 771 | 1 | 755 | 0.0 | 822 |
| MS.gene44405.t1 | AT4G30160 | 52.734 | 768 | 348 | 7 | 6 | 771 | 1 | 755 | 0.0 | 822 |
| MS.gene44405.t1 | AT4G30160 | 52.734 | 768 | 348 | 7 | 6 | 771 | 1 | 755 | 0.0 | 822 |
| MS.gene44405.t1 | AT4G30160 | 52.320 | 776 | 348 | 8 | 6 | 771 | 1 | 764 | 0.0 | 817 |
| MS.gene44405.t1 | AT5G57320 | 50.130 | 772 | 369 | 7 | 6 | 774 | 1 | 759 | 0.0 | 813 |
| MS.gene44405.t1 | AT5G57320 | 50.130 | 772 | 369 | 7 | 6 | 774 | 1 | 759 | 0.0 | 813 |
| MS.gene44405.t1 | AT2G29890 | 42.464 | 763 | 416 | 9 | 6 | 759 | 1 | 749 | 0.0 | 607 |
| MS.gene44405.t1 | AT2G29890 | 42.464 | 763 | 416 | 9 | 6 | 759 | 1 | 749 | 0.0 | 607 |
| MS.gene44405.t1 | AT2G29890 | 42.520 | 762 | 415 | 9 | 6 | 759 | 1 | 747 | 0.0 | 607 |
| MS.gene44405.t1 | AT2G29890 | 42.520 | 762 | 415 | 9 | 6 | 759 | 1 | 747 | 0.0 | 607 |
| MS.gene44405.t1 | AT2G29890 | 42.126 | 762 | 401 | 11 | 6 | 759 | 1 | 730 | 0.0 | 589 |
Find 173 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGCTCTTATTCGAATTTC+TGG | 0.068339 | 7.3:+17625474 | MS.gene44405:CDS |
| GAACAGAAACCTCAACTTTC+TGG | 0.147823 | 7.3:+17626029 | MS.gene44405:CDS |
| AGTCAGACTCAGGTGAATTT+TGG | 0.155578 | 7.3:+17621136 | MS.gene44405:CDS |
| TGAATTGAATGCATTATTTA+AGG | 0.185769 | 7.3:-17628325 | None:intergenic |
| GAACAACAAATGCTATTTAT+TGG | 0.194603 | 7.3:+17623815 | MS.gene44405:CDS |
| TTAAATCCAACTTTGATTCT+TGG | 0.208519 | 7.3:+17624072 | MS.gene44405:CDS |
| CCATTCCTGCTCAACTTTAC+AGG | 0.213990 | 7.3:+17621226 | MS.gene44405:CDS |
| CTTGTTATCCTTGTAGCTTT+TGG | 0.264232 | 7.3:-17624020 | None:intergenic |
| GTTTGAAACTCTTCTTCTTC+TGG | 0.273544 | 7.3:-17620465 | None:intergenic |
| CTTTGCAGCTGGAAAGTTAC+AGG | 0.277681 | 7.3:+17626248 | MS.gene44405:intron |
| CTTGGCTCTTTCCTGAATAT+TGG | 0.278320 | 7.3:-17620706 | None:intergenic |
| GGTGGAATTTCCTCATTAAC+TGG | 0.301844 | 7.3:-17624419 | None:intergenic |
| GTGGTGCTGAGGTGTTTGTC+TGG | 0.302751 | 7.3:+17623841 | MS.gene44405:CDS |
| TGGAGCCAATTCCAATATTC+AGG | 0.313397 | 7.3:+17620695 | MS.gene44405:CDS |
| GCTTGAAGGAGGTGGAAAAT+TGG | 0.327549 | 7.3:+17624445 | MS.gene44405:CDS |
| TTCACTTTCTCATTAAATAA+AGG | 0.328967 | 7.3:+17626124 | MS.gene44405:CDS |
| CGCACGCAGAAGTGTTTGTT+TGG | 0.329116 | 7.3:+17626456 | MS.gene44405:CDS |
| ATTTGTTTGATATTCACTTC+TGG | 0.330252 | 7.3:+17620170 | MS.gene44405:CDS |
| TACTTCCTGTGCAGTTGGTT+TGG | 0.336173 | 7.3:+17624675 | MS.gene44405:CDS |
| CTGATTACCTTCTTCCCAAT+GGG | 0.338043 | 7.3:-17621180 | None:intergenic |
| TGGCCTACTCCTTGGAATGC+TGG | 0.347476 | 7.3:-17619621 | None:intergenic |
| AACTTTGATTCTTGGCCATC+AGG | 0.351495 | 7.3:+17624080 | MS.gene44405:CDS |
| TTTCAGGGTCGCATATTTGA+TGG | 0.366605 | 7.3:+17625027 | MS.gene44405:intron |
| CTTGCATTACTATTTGGAAT+TGG | 0.367203 | 7.3:+17627210 | MS.gene44405:CDS |
| TCTTTCCTGAATATTGGAAT+TGG | 0.369492 | 7.3:-17620700 | None:intergenic |
| AGGTGTTTGTCTGGGTTGGC+CGG | 0.379767 | 7.3:+17623850 | MS.gene44405:CDS |
| AAAGCTTCTGCTCTTTGTCT+TGG | 0.386980 | 7.3:-17628297 | None:intergenic |
| TTTCAGGGTGGTGTGAGCTC+TGG | 0.392813 | 7.3:+17625393 | MS.gene44405:intron |
| TTTGATATTCACTTCTGGAT+TGG | 0.398441 | 7.3:+17620175 | MS.gene44405:CDS |
| TCAGGAAAGAGCCAAGGCTT+TGG | 0.414083 | 7.3:+17620713 | MS.gene44405:CDS |
| ACACACTGCAATACCTGAAC+AGG | 0.416762 | 7.3:-17624945 | None:intergenic |
| CCAACCGAGTAGCCATCTTT+TGG | 0.419540 | 7.3:-17624890 | None:intergenic |
| TGTTGCCCTCTTCCAACCTA+TGG | 0.420378 | 7.3:+17625068 | MS.gene44405:CDS |
| GAAATTCCACCTTTGCTTGA+AGG | 0.422960 | 7.3:+17624431 | MS.gene44405:CDS |
| TTTGTAGAGGGACTGACATA+TGG | 0.424024 | 7.3:+17619836 | MS.gene44405:intron |
| CCATGATCAGATTTGGGCAA+TGG | 0.424674 | 7.3:-17619883 | None:intergenic |
| TTAGAAGGCGGTGTTGCATC+TGG | 0.425639 | 7.3:+17620432 | MS.gene44405:CDS |
| GAAGGAAGAGGAAAAGTTGC+AGG | 0.426111 | 7.3:+17624128 | MS.gene44405:CDS |
| CCTTCTGTTACTTTATATAG+AGG | 0.429563 | 7.3:-17626668 | None:intergenic |
| GATGCAACACCGCCTTCTAA+TGG | 0.434338 | 7.3:-17620429 | None:intergenic |
| TCTGTTGTGTATGTCTCATC+TGG | 0.435377 | 7.3:-17625447 | None:intergenic |
| AGATTCTTACATCATCTTGC+AGG | 0.435408 | 7.3:+17619921 | MS.gene44405:CDS |
| TGTGATAAAATGCAGGTTCA+AGG | 0.436765 | 7.3:+17627168 | MS.gene44405:intron |
| TCAACTTTCTGGTTTGCTGT+TGG | 0.437448 | 7.3:+17626040 | MS.gene44405:CDS |
| AAGACAAAGAGCAGAAGCTT+TGG | 0.439336 | 7.3:+17628299 | MS.gene44405:CDS |
| TTTGCTGAAGCAACAAGGTA+TGG | 0.441502 | 7.3:+17624370 | MS.gene44405:CDS |
| ACTTTCTGGTTTGCTGTTGG+AGG | 0.444373 | 7.3:+17626043 | MS.gene44405:CDS |
| ATTGAACTTGATGCAGCCCT+TGG | 0.445418 | 7.3:+17620327 | MS.gene44405:CDS |
| ACGAGTTGTCAGAATAAAAC+AGG | 0.445675 | 7.3:+17620512 | MS.gene44405:CDS |
| ACTTGTCAGATTCATGCCCT+TGG | 0.446430 | 7.3:-17620377 | None:intergenic |
| ATCAAGTTGCCATACCGGAC+TGG | 0.448608 | 7.3:-17628364 | None:intergenic |
| TACAATGTCCAACTCACTAA+AGG | 0.448756 | 7.3:+17624917 | MS.gene44405:CDS |
| TTCAGTGAAGACCGTGCAAA+AGG | 0.449952 | 7.3:-17620621 | None:intergenic |
| CCATGTATTATACCATTAGA+AGG | 0.450482 | 7.3:+17620417 | MS.gene44405:CDS |
| CCACCTTTGCTTGAAGGAGG+TGG | 0.452140 | 7.3:+17624437 | MS.gene44405:CDS |
| ACAATGTCCAACTCACTAAA+GGG | 0.455808 | 7.3:+17624918 | MS.gene44405:CDS |
| AGCATACTTTAAAGCAACTC+CGG | 0.457705 | 7.3:-17625999 | None:intergenic |
| GCAGAAGTGTTTGTTTGGAT+TGG | 0.458213 | 7.3:+17626461 | MS.gene44405:CDS |
| GGGGACGTGCAGTGCAGTGG+AGG | 0.462141 | 7.3:+17620349 | MS.gene44405:CDS |
| TTGAACTTGATGCAGCCCTT+GGG | 0.463834 | 7.3:+17620328 | MS.gene44405:CDS |
| AATTTACCAACATCCTCCTT+AGG | 0.471065 | 7.3:-17624591 | None:intergenic |
| TGCAAGCTGCTGCTGCTCAA+TGG | 0.471105 | 7.3:-17625718 | None:intergenic |
| ACTAAAGGGTAGACCTGTTC+AGG | 0.472162 | 7.3:+17624932 | MS.gene44405:CDS |
| ACTGATTACCTTCTTCCCAA+TGG | 0.472611 | 7.3:-17621181 | None:intergenic |
| TGGTGCTGAGGTGTTTGTCT+GGG | 0.473290 | 7.3:+17623842 | MS.gene44405:CDS |
| TCAAGTTGCCATACCGGACT+GGG | 0.474189 | 7.3:-17628363 | None:intergenic |
| ACATGCAATGTTGCAATTGT+TGG | 0.474745 | 7.3:+17620774 | MS.gene44405:CDS |
| GAGAAGGCTGGATCTCTAGA+TGG | 0.475834 | 7.3:+17626629 | MS.gene44405:CDS |
| GGTGTTTGTCTGGGTTGGCC+GGG | 0.476842 | 7.3:+17623851 | MS.gene44405:CDS |
| ACCGGACTGGGAGATGCCTC+AGG | 0.479838 | 7.3:-17628351 | None:intergenic |
| GCTGCTGCTCAATGGAAGAT+TGG | 0.480547 | 7.3:-17625710 | None:intergenic |
| TCAGATTTGGGCAATGGAAC+TGG | 0.482282 | 7.3:-17619877 | None:intergenic |
| TTTCAGGTATGGATAATCAA+TGG | 0.484318 | 7.3:+17624549 | MS.gene44405:intron |
| AGTTGAGCAGGAATGGTCTC+TGG | 0.485473 | 7.3:-17621219 | None:intergenic |
| GCTTTAAAGTATGCTAAAGA+AGG | 0.485635 | 7.3:+17626007 | MS.gene44405:CDS |
| CCTTCTAATGGTATAATACA+TGG | 0.486449 | 7.3:-17620417 | None:intergenic |
| CATTGCAGATGATGGAAAGT+TGG | 0.487874 | 7.3:+17621107 | MS.gene44405:intron |
| TCCTGAGGCATCTCCCAGTC+CGG | 0.493218 | 7.3:+17628350 | MS.gene44405:CDS |
| GGAAGTTATTCAGTTGTTGA+AGG | 0.493525 | 7.3:+17620734 | MS.gene44405:CDS |
| GCTGAGGTGTTTGTCTGGGT+TGG | 0.493654 | 7.3:+17623846 | MS.gene44405:CDS |
| CCTGTAAAGTTGAGCAGGAA+TGG | 0.497634 | 7.3:-17621226 | None:intergenic |
| CTGAATAACTTCCAAAGCCT+TGG | 0.506351 | 7.3:-17620724 | None:intergenic |
| ACATACCTGTAAAGTTGAGC+AGG | 0.510006 | 7.3:-17621231 | None:intergenic |
| TTTGAAAGTTCACCTTCCAC+TGG | 0.514664 | 7.3:-17623780 | None:intergenic |
| AGGATAACAAGGGTTATTCA+AGG | 0.515332 | 7.3:+17624032 | MS.gene44405:CDS |
| CAGAAATACATAGAGAAGGC+TGG | 0.518835 | 7.3:+17626617 | MS.gene44405:intron |
| TGCGAAAACTTCATTACCTA+AGG | 0.522289 | 7.3:+17624575 | MS.gene44405:CDS |
| TTGAAGGAAAAGTATCATCA+AGG | 0.523102 | 7.3:+17620750 | MS.gene44405:CDS |
| CCACCTCCTTCAAGCAAAGG+TGG | 0.523532 | 7.3:-17624437 | None:intergenic |
| CTGCGTGCGTATCAAGTATG+AGG | 0.524059 | 7.3:-17626442 | None:intergenic |
| ATGAGAAAGTGAACAAATGC+GGG | 0.524703 | 7.3:-17626114 | None:intergenic |
| TGAACTTTCAAAGTCACTGT+TGG | 0.526540 | 7.3:+17623791 | MS.gene44405:CDS |
| GATTGGAAAGGATACAAGTC+AGG | 0.530039 | 7.3:+17620192 | MS.gene44405:CDS |
| AATACTGCTGGTGCTGAAGA+AGG | 0.531857 | 7.3:+17624110 | MS.gene44405:CDS |
| TCATTACCTAAGGAGGATGT+TGG | 0.532324 | 7.3:+17624585 | MS.gene44405:CDS |
| TCAGGATCTGCTAATACTGC+TGG | 0.532785 | 7.3:+17624098 | MS.gene44405:CDS |
| CAAAAGCTACAAGGATAACA+AGG | 0.533224 | 7.3:+17624021 | MS.gene44405:CDS |
| CCAACCTATGGTGGTCCTCA+AGG | 0.536576 | 7.3:+17625080 | MS.gene44405:CDS |
| TGCCCTCTTCCAACCTATGG+TGG | 0.541469 | 7.3:+17625071 | MS.gene44405:CDS |
| CCAAAAGATGGCTACTCGGT+TGG | 0.544351 | 7.3:+17624890 | MS.gene44405:CDS |
| CCTCTATATAAAGTAACAGA+AGG | 0.545897 | 7.3:+17626668 | MS.gene44405:CDS |
| AAGACTACTTCCTGTGCAGT+TGG | 0.546663 | 7.3:+17624670 | MS.gene44405:CDS |
| TTTCCACCTCCTTCAAGCAA+AGG | 0.547299 | 7.3:-17624440 | None:intergenic |
| TGATGGCCAAGAATCAAAGT+TGG | 0.548548 | 7.3:-17624078 | None:intergenic |
| GTCTAGCGCTACAAAAGTGT+TGG | 0.550538 | 7.3:+17619596 | MS.gene44405:CDS |
| AGGTCTACCCTTTAGTGAGT+TGG | 0.552195 | 7.3:-17624925 | None:intergenic |
| GCAACAAGGTATGGGTGTCA+AGG | 0.552463 | 7.3:+17624379 | MS.gene44405:CDS |
| TGATCATGGAAAATTCTACA+TGG | 0.552785 | 7.3:+17619897 | MS.gene44405:CDS |
| CCATTGCCCAAATCTGATCA+TGG | 0.554241 | 7.3:+17619883 | MS.gene44405:CDS |
| TTTCATTTGCAGACAACACA+AGG | 0.556018 | 7.3:+17620133 | MS.gene44405:intron |
| TGGAAGAGGGCAACAAATTG+TGG | 0.558563 | 7.3:-17625060 | None:intergenic |
| TTTATTGGACTGTGGTGCTG+AGG | 0.559128 | 7.3:+17623830 | MS.gene44405:CDS |
| TTGCTGAAGCAACAAGGTAT+GGG | 0.563710 | 7.3:+17624371 | MS.gene44405:CDS |
| TCTCATCAACTTGTGTTACC+CGG | 0.565694 | 7.3:-17623869 | None:intergenic |
| AGGTATGGGTGTCAAGGGAG+CGG | 0.567174 | 7.3:+17624385 | MS.gene44405:CDS |
| TATTCACTTCTGGATTGGAA+AGG | 0.571615 | 7.3:+17620180 | MS.gene44405:CDS |
| TGGAATTGGTCATTCTGTAG+AGG | 0.571981 | 7.3:+17627224 | MS.gene44405:CDS |
| GGGACGTGCAGTGCAGTGGA+GGG | 0.572315 | 7.3:+17620350 | MS.gene44405:CDS |
| TCAGTGAAGACCGTGCAAAA+GGG | 0.572433 | 7.3:-17620620 | None:intergenic |
| GGACCACCATAGGTTGGAAG+AGG | 0.572587 | 7.3:-17625074 | None:intergenic |
| AATCTAATGGATCAAGTCAA+GGG | 0.572606 | 7.3:+17628268 | MS.gene44405:CDS |
| CCTTGAGGACCACCATAGGT+TGG | 0.575827 | 7.3:-17625080 | None:intergenic |
| TGAACTTGATGCAGCCCTTG+GGG | 0.577671 | 7.3:+17620329 | MS.gene44405:CDS |
| TTATCACTCTGGTGAGAGGA+AGG | 0.577702 | 7.3:+17624647 | MS.gene44405:CDS |
| CAACAAGGTATGGGTGTCAA+GGG | 0.578969 | 7.3:+17624380 | MS.gene44405:CDS |
| GCATACTTTAAAGCAACTCC+GGG | 0.579334 | 7.3:-17625998 | None:intergenic |
| TGTTTGGATTGGTCAGTGTG+TGG | 0.580064 | 7.3:+17626472 | MS.gene44405:CDS |
| AAATCTAATGGATCAAGTCA+AGG | 0.583918 | 7.3:+17628267 | MS.gene44405:CDS |
| GCTGGTGCTGAAGAAGGAAG+AGG | 0.589109 | 7.3:+17624116 | MS.gene44405:CDS |
| TGTATTCATCTTAGACACTC+AGG | 0.590728 | 7.3:+17620653 | MS.gene44405:CDS |
| AACAGCAAACCAGAAAGTTG+AGG | 0.591628 | 7.3:-17626038 | None:intergenic |
| CAGACAACACAAGGCAAAGG+AGG | 0.596140 | 7.3:+17620142 | MS.gene44405:intron |
| ATTCCACCTTTGCTTGAAGG+AGG | 0.596534 | 7.3:+17624434 | MS.gene44405:CDS |
| GGTGAGGTCAAGCCAGTGGA+AGG | 0.597320 | 7.3:+17623768 | MS.gene44405:CDS |
| TTGGATACTGAGTCAGACTC+AGG | 0.601523 | 7.3:+17621126 | MS.gene44405:CDS |
| ACACGTTTGTATGTATGCAA+AGG | 0.604224 | 7.3:+17620486 | MS.gene44405:CDS |
| CAATATTCAGGAAAGAGCCA+AGG | 0.604597 | 7.3:+17620707 | MS.gene44405:CDS |
| AGGACCAAAAGATGGCTACT+CGG | 0.605691 | 7.3:+17624886 | MS.gene44405:CDS |
| GTGTTGGAACCAGCATTCCA+AGG | 0.606804 | 7.3:+17619612 | MS.gene44405:CDS |
| GATACCTTGAGGACCACCAT+AGG | 0.610363 | 7.3:-17625084 | None:intergenic |
| GTGCAGTGGAGGGAAATCCA+AGG | 0.611979 | 7.3:+17620360 | MS.gene44405:CDS |
| CTAGCTTTGCTGAAGCAACA+AGG | 0.612532 | 7.3:+17624365 | MS.gene44405:intron |
| GTGTTGTACACTTATCACTC+TGG | 0.614335 | 7.3:+17624636 | MS.gene44405:CDS |
| ATCTAATGGATCAAGTCAAG+GGG | 0.614748 | 7.3:+17628269 | MS.gene44405:CDS |
| GCAGTATTAGCAGATCCTGA+TGG | 0.618214 | 7.3:-17624095 | None:intergenic |
| AATGAGAAAGTGAACAAATG+CGG | 0.626137 | 7.3:-17626115 | None:intergenic |
| GATCATGGAAAATTCTACAT+GGG | 0.626759 | 7.3:+17619898 | MS.gene44405:CDS |
| TGCATTCAATTCATCTCCTG+AGG | 0.627352 | 7.3:+17628335 | MS.gene44405:CDS |
| TGCAGTGGAGGGAAATCCAA+GGG | 0.629828 | 7.3:+17620361 | MS.gene44405:CDS |
| GAACTTGATGCAGCCCTTGG+GGG | 0.630157 | 7.3:+17620330 | MS.gene44405:CDS |
| GAACCAGCATTCCAAGGAGT+AGG | 0.632356 | 7.3:+17619618 | MS.gene44405:CDS |
| TGAAGGAAAAGTATCATCAA+GGG | 0.632365 | 7.3:+17620751 | MS.gene44405:CDS |
| GAAAACTTCATTACCTAAGG+AGG | 0.633558 | 7.3:+17624578 | MS.gene44405:CDS |
| CTCTATATAAAGTAACAGAA+GGG | 0.641376 | 7.3:+17626669 | MS.gene44405:CDS |
| ACTTTATATAGAGGTACATG+AGG | 0.641936 | 7.3:-17626659 | None:intergenic |
| GTAGAGGGACTGACATATGG+AGG | 0.646473 | 7.3:+17619839 | MS.gene44405:intron |
| ACACTTATCACTCTGGTGAG+AGG | 0.648428 | 7.3:+17624643 | MS.gene44405:CDS |
| AGCAGCATGTACCACTGCTG+AGG | 0.650561 | 7.3:+17623896 | MS.gene44405:CDS |
| TGAAGGAGGTGGAAAATTGG+AGG | 0.653497 | 7.3:+17624448 | MS.gene44405:CDS |
| GACCACCATAGGTTGGAAGA+GGG | 0.653871 | 7.3:-17625073 | None:intergenic |
| GGGTAACACAAGTTGATGAG+AGG | 0.661447 | 7.3:+17623871 | MS.gene44405:CDS |
| TTGCAGACAACACAAGGCAA+AGG | 0.667009 | 7.3:+17620139 | MS.gene44405:intron |
| TGATTACCTTCTTCCCAATG+GGG | 0.667314 | 7.3:-17621179 | None:intergenic |
| TTGCAGTATTGCAGATGGTG+AGG | 0.673987 | 7.3:+17623752 | MS.gene44405:intron |
| ATATGGAATTACCTCAGCAG+TGG | 0.676703 | 7.3:-17623907 | None:intergenic |
| AAATGCTATTTATTGGACTG+TGG | 0.679201 | 7.3:+17623822 | MS.gene44405:CDS |
| TGTGGTTGCAGTATTGCAGA+TGG | 0.683073 | 7.3:+17623747 | MS.gene44405:intron |
| GATTACCTTCTTCCCAATGG+GGG | 0.690181 | 7.3:-17621178 | None:intergenic |
| AGATGGTGAGGTCAAGCCAG+TGG | 0.691823 | 7.3:+17623764 | MS.gene44405:CDS |
| AGATTGCAGAAGAAAACACT+CGG | 0.695852 | 7.3:-17625658 | None:intergenic |
| TCTAATGGATCAAGTCAAGG+GGG | 0.716226 | 7.3:+17628270 | MS.gene44405:CDS |
| AAAAGCTACAAGGATAACAA+GGG | 0.718147 | 7.3:+17624022 | MS.gene44405:CDS |
| TGTATTATACCATTAGAAGG+CGG | 0.738033 | 7.3:+17620420 | MS.gene44405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 17619579 | 17628371 | 17619579 | ID=MS.gene44405 |
| chr7.3 | mRNA | 17619579 | 17628371 | 17619579 | ID=MS.gene44405.t1;Parent=MS.gene44405 |
| chr7.3 | exon | 17619579 | 17619649 | 17619579 | ID=MS.gene44405.t1.exon1;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17619579 | 17619649 | 17619579 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17619843 | 17619942 | 17619843 | ID=MS.gene44405.t1.exon2;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17619843 | 17619942 | 17619843 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17620145 | 17620213 | 17620145 | ID=MS.gene44405.t1.exon3;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17620145 | 17620213 | 17620145 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17620297 | 17620533 | 17620297 | ID=MS.gene44405.t1.exon4;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17620297 | 17620533 | 17620297 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17620618 | 17620795 | 17620618 | ID=MS.gene44405.t1.exon5;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17620618 | 17620795 | 17620618 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17621115 | 17621247 | 17621115 | ID=MS.gene44405.t1.exon6;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17621115 | 17621247 | 17621115 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17623758 | 17623917 | 17623758 | ID=MS.gene44405.t1.exon7;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17623758 | 17623917 | 17623758 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17623996 | 17624149 | 17623996 | ID=MS.gene44405.t1.exon8;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17623996 | 17624149 | 17623996 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17624369 | 17624469 | 17624369 | ID=MS.gene44405.t1.exon9;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17624369 | 17624469 | 17624369 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17624555 | 17624713 | 17624555 | ID=MS.gene44405.t1.exon10;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17624555 | 17624713 | 17624555 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17624885 | 17624953 | 17624885 | ID=MS.gene44405.t1.exon11;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17624885 | 17624953 | 17624885 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17625033 | 17625101 | 17625033 | ID=MS.gene44405.t1.exon12;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17625033 | 17625101 | 17625033 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17625399 | 17625536 | 17625399 | ID=MS.gene44405.t1.exon13;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17625399 | 17625536 | 17625399 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17625636 | 17625764 | 17625636 | ID=MS.gene44405.t1.exon14;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17625636 | 17625764 | 17625636 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17625998 | 17626145 | 17625998 | ID=MS.gene44405.t1.exon15;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17625998 | 17626145 | 17625998 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17626256 | 17626269 | 17626256 | ID=MS.gene44405.t1.exon16;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17626256 | 17626269 | 17626256 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17626392 | 17626532 | 17626392 | ID=MS.gene44405.t1.exon17;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17626392 | 17626532 | 17626392 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17626620 | 17626745 | 17626620 | ID=MS.gene44405.t1.exon18;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17626620 | 17626745 | 17626620 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17627183 | 17627245 | 17627183 | ID=MS.gene44405.t1.exon19;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17627183 | 17627245 | 17627183 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| chr7.3 | exon | 17628264 | 17628371 | 17628264 | ID=MS.gene44405.t1.exon20;Parent=MS.gene44405.t1 |
| chr7.3 | CDS | 17628264 | 17628371 | 17628264 | ID=cds.MS.gene44405.t1;Parent=MS.gene44405.t1 |
| Gene Sequence |
| Protein sequence |
