AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04628


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04628.t1 MTR_7g093260 100.000 377 0 0 1 377 1 377 0.0 785
MS.gene04628.t1 MTR_0015s0130 96.817 377 12 0 1 377 1 377 0.0 769
MS.gene04628.t1 MTR_2g096840 96.021 377 15 0 1 377 1 377 0.0 765
MS.gene04628.t1 MTR_6g004000 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene04628.t1 MTR_3g095530 95.756 377 16 0 1 377 1 377 0.0 761
MS.gene04628.t1 MTR_7g026230 96.021 377 15 0 1 377 1 377 0.0 761
MS.gene04628.t1 MTR_2g008050 92.838 377 27 0 1 377 1 377 0.0 744
MS.gene04628.t1 MTR_7g027185 43.799 379 199 3 10 374 7 385 2.01e-120 354
MS.gene04628.t1 MTR_7g027185 45.070 355 182 2 10 351 7 361 9.32e-118 346
MS.gene04628.t1 MTR_7g027185 48.208 307 157 1 10 314 7 313 3.31e-110 325
MS.gene04628.t1 MTR_5g066400 37.136 447 207 12 1 376 1 444 1.61e-91 282
MS.gene04628.t1 MTR_8g464900 36.343 432 202 11 1 362 1 429 1.01e-84 264
MS.gene04628.t1 MTR_5g066400 34.529 446 192 12 1 376 1 416 9.86e-79 248
MS.gene04628.t1 MTR_8g089630 34.845 419 207 10 10 372 10 418 9.57e-72 230
MS.gene04628.t1 MTR_3g030550 37.766 376 208 9 11 377 5 363 2.48e-68 219
MS.gene04628.t1 MTR_5g066400 34.000 400 193 11 1 332 1 397 1.62e-67 219
MS.gene04628.t1 MTR_2g445210 27.869 427 242 7 4 366 2 426 3.20e-55 188
MS.gene04628.t1 MTR_8g007440 33.588 262 151 6 77 319 9 266 8.45e-45 155
MS.gene04628.t1 MTR_2g445210 26.330 376 211 7 4 315 2 375 2.80e-41 149
MS.gene04628.t1 MTR_3g010170 30.303 297 183 9 91 371 179 467 1.47e-39 146
MS.gene04628.t1 MTR_8g070520 31.058 293 175 10 91 366 187 469 2.41e-35 135
MS.gene04628.t1 MTR_8g070520 30.576 278 167 9 91 352 187 454 4.40e-32 126
MS.gene04628.t1 MTR_3g067945 29.762 252 158 7 9 245 21 268 3.59e-23 101
MS.gene04628.t1 MTR_3g067945 34.426 122 77 2 250 368 586 707 8.52e-16 79.3
MS.gene04628.t1 MTR_8g008540 70.270 37 11 0 340 376 41 77 4.15e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04628.t1 AT5G09810 95.756 377 16 0 1 377 1 377 0.0 762
MS.gene04628.t1 AT3G12110 95.756 377 16 0 1 377 1 377 0.0 760
MS.gene04628.t1 AT3G46520 95.756 377 16 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT3G53750 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT3G53750 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT3G46520 95.756 377 16 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene04628.t1 AT5G59370 95.491 377 17 0 1 377 1 377 0.0 758
MS.gene04628.t1 AT5G59370 95.491 377 17 0 1 377 1 377 0.0 758
MS.gene04628.t1 AT3G18780 90.981 377 34 0 1 377 1 377 0.0 737
MS.gene04628.t1 AT3G18780 90.981 377 34 0 1 377 1 377 0.0 737
MS.gene04628.t1 AT1G49240 90.716 377 35 0 1 377 1 377 0.0 735
MS.gene04628.t1 AT3G18780 90.808 359 33 0 1 359 1 359 0.0 696
MS.gene04628.t1 AT2G42100 85.326 368 54 0 10 377 11 378 0.0 677
MS.gene04628.t1 AT2G42090 71.351 370 101 1 7 376 1 365 0.0 568
MS.gene04628.t1 AT2G42170 78.313 332 69 1 46 377 1 329 0.0 560
MS.gene04628.t1 AT2G42170 78.313 332 69 1 46 377 1 329 0.0 560
MS.gene04628.t1 AT2G42170 78.205 312 65 1 46 357 1 309 0.0 522
MS.gene04628.t1 AT2G42170 78.205 312 65 1 46 357 1 309 0.0 522
MS.gene04628.t1 AT2G42170 78.761 226 45 1 152 377 9 231 5.79e-132 377
MS.gene04628.t1 AT3G27000 44.591 379 196 4 10 374 7 385 2.61e-122 358
MS.gene04628.t1 AT1G18450 36.569 443 211 9 1 376 1 440 7.98e-94 288
MS.gene04628.t1 AT1G13180 34.615 416 212 11 10 372 9 417 7.01e-72 231
MS.gene04628.t1 AT3G60830 37.731 379 212 9 7 377 1 363 1.19e-67 218
MS.gene04628.t1 AT3G33520 30.166 421 236 7 10 377 5 420 6.97e-59 197
MS.gene04628.t1 AT5G56180 30.986 284 171 9 91 358 50 324 2.21e-34 130
MS.gene04628.t1 AT5G56180 30.986 284 171 9 91 358 182 456 1.20e-33 130
MS.gene04628.t1 AT3G12380 31.395 258 152 9 9 245 21 274 8.24e-26 109
MS.gene04628.t1 AT3G12380 33.103 145 93 2 228 368 572 716 3.20e-16 80.9
MS.gene04628.t1 AT3G12380 31.250 256 149 9 9 245 21 268 3.66e-25 107
MS.gene04628.t1 AT3G12380 33.103 145 93 2 228 368 566 710 3.22e-16 80.9
MS.gene04628.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.58e-23 95.1
MS.gene04628.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.58e-23 95.1
MS.gene04628.t1 AT5G56180 32.292 192 110 7 91 271 182 364 8.79e-19 87.4
MS.gene04628.t1 AT1G73910 29.268 123 71 2 1 107 1 123 3.24e-12 64.7

Find 96 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATGGGATTGTTAGTAAT+TGG 0.164954 7.3:+17401263 MS.gene04628:CDS
CTGGATTGGAGGTTCCATTT+TGG 0.195803 7.3:+17402752 MS.gene04628:CDS
GACGGCTGGAACAAAACTTC+TGG 0.283900 7.3:-17402507 None:intergenic
TGTTAGTAATTGGGATGATA+TGG 0.286824 7.3:+17401273 MS.gene04628:CDS
AGAAGAACAGGGTGTTCTTC+AGG 0.300324 7.3:-17401340 None:intergenic
GAGGGATATGAAGGAGAAAT+TGG 0.306130 7.3:+17402362 MS.gene04628:CDS
CATTTCCTGTGTACTATTGA+TGG 0.320989 7.3:-17403004 None:intergenic
ATCCTTCGTTTGGATCTTGC+AGG 0.332165 7.3:+17402258 MS.gene04628:CDS
CTAACAATCCCATGCTCAAT+TGG 0.332451 7.3:-17401256 None:intergenic
AGTGCATATCCCTCGTAAAT+AGG 0.333417 7.3:-17402225 None:intergenic
GGTGCTTCAGTGAGAAGAAC+AGG 0.346523 7.3:-17401352 None:intergenic
TCCACATGCAATCCTTCGTT+TGG 0.359517 7.3:+17402248 MS.gene04628:CDS
AAGGCAGAATATGATGAATC+TGG 0.369605 7.3:+17402980 MS.gene04628:CDS
AGTGCTGAGAGATGCCAAAA+TGG 0.400190 7.3:-17402766 None:intergenic
ATCTCTCAGCACTTTCCAAC+AGG 0.421981 7.3:+17402776 MS.gene04628:CDS
CGATTAGCCTTAGGATTAAG+AGG 0.422207 7.3:-17401373 None:intergenic
TGAAGTGTGATGTCGACATT+AGG 0.428549 7.3:+17402583 MS.gene04628:CDS
GGTTCCGTTGTCGCAAACTA+AGG 0.435984 7.3:-17400846 None:intergenic
TGTTCCAGCCGTCCATGATC+GGG 0.440481 7.3:+17402517 MS.gene04628:CDS
TTGTTCCAGCCGTCCATGAT+CGG 0.442160 7.3:+17402516 MS.gene04628:CDS
TATGCGAGTGGTCGTACAAC+TGG 0.443707 7.3:+17401475 MS.gene04628:CDS
GCAGTATTCCCTAGCATAGT+AGG 0.445310 7.3:+17401133 MS.gene04628:CDS
GCATGGGATTGTTAGTAATT+GGG 0.447989 7.3:+17401264 MS.gene04628:CDS
CTCATCCTATCAGCAATACC+AGG 0.462364 7.3:-17402654 None:intergenic
AGGAGATTCCATCCCGATCA+TGG 0.463558 7.3:-17402529 None:intergenic
ACGGCTGGAACAAAACTTCT+GGG 0.468624 7.3:-17402506 None:intergenic
TTAGTTTGCGACAACGGAAC+CGG 0.471674 7.3:+17400848 MS.gene04628:CDS
CAGAGAGGAAGTACAGTGTC+TGG 0.471867 7.3:+17402733 MS.gene04628:CDS
TATTGCTCTTGATTATGAGC+AGG 0.475672 7.3:+17402389 MS.gene04628:CDS
GGGATGATATGGAGAAGATC+TGG 0.484705 7.3:+17401284 MS.gene04628:CDS
AGGAAGTACAGTGTCTGGAT+TGG 0.485496 7.3:+17402738 MS.gene04628:CDS
GACATTAGGAAGGATCTCTA+TGG 0.488078 7.3:+17402597 MS.gene04628:CDS
CAGACACTGTACTTCCTCTC+TGG 0.493244 7.3:-17402732 None:intergenic
CACAGGGGTAATGGTTGGAA+TGG 0.495803 7.3:+17401168 MS.gene04628:CDS
AATTTCTCGCTCTGCTGAAG+TGG 0.496387 7.3:-17402337 None:intergenic
TAACAATCCCATGCTCAATT+GGG 0.497649 7.3:-17401255 None:intergenic
ATCGTGATTACCTGTCCATC+AGG 0.500077 7.3:-17402462 None:intergenic
AGAAATTGTGAGGGATATGA+AGG 0.501249 7.3:+17402353 MS.gene04628:CDS
AAGTACAGTGTCTGGATTGG+AGG 0.501277 7.3:+17402741 MS.gene04628:CDS
TGTTCCCTGGTATTGCTGAT+AGG 0.501884 7.3:+17402649 MS.gene04628:CDS
CTGTCCATCAGGTAGCTCAT+AGG 0.503008 7.3:-17402451 None:intergenic
TCCACGTCACACAGGGGTAA+TGG 0.512712 7.3:+17401159 MS.gene04628:CDS
CGTGGACGTCCTACTATGCT+AGG 0.514609 7.3:-17401142 None:intergenic
ACAGGGGTAATGGTTGGAAT+GGG 0.516861 7.3:+17401169 MS.gene04628:CDS
CCATCCCGATCATGGACGGC+TGG 0.529203 7.3:-17402521 None:intergenic
TTGAAATACCCAATTGAGCA+TGG 0.529351 7.3:+17401247 MS.gene04628:CDS
GTGCTTTCACTTTATGCGAG+TGG 0.546070 7.3:+17401463 MS.gene04628:CDS
TGCAGGAGATGATGCACCAA+GGG 0.547290 7.3:+17401111 MS.gene04628:CDS
GAGCAAGGAGATTACAGCAT+TGG 0.550032 7.3:+17402674 MS.gene04628:CDS
TCGAGTTAAATGTTGTCTCA+TGG 0.551870 7.3:-17402557 None:intergenic
CTATGAGCTACCTGATGGAC+AGG 0.554582 7.3:+17402452 MS.gene04628:CDS
CAGCCCTTAGTTTGCGACAA+CGG 0.557180 7.3:+17400842 MS.gene04628:CDS
TGAATAGCAACATACATAGC+AGG 0.559953 7.3:-17401436 None:intergenic
GGAACAAAACTTCTGGGCAT+CGG 0.561285 7.3:-17402500 None:intergenic
AGGCAGAATATGATGAATCT+GGG 0.564408 7.3:+17402981 MS.gene04628:CDS
TGAAGCACCTCTTAATCCTA+AGG 0.566737 7.3:+17401366 MS.gene04628:CDS
CAACGGAACCGGCATGGTCA+AGG 0.570249 7.3:+17400859 MS.gene04628:CDS
AATGTTGTCTCATGGATACC+AGG 0.572742 7.3:-17402549 None:intergenic
ACCTAGTAGCATGAAAATCA+AGG 0.573048 7.3:+17402698 MS.gene04628:CDS
GGTGAAAGTGTAGCCACGCT+CGG 0.575757 7.3:-17402316 None:intergenic
TGAAATACCCAATTGAGCAT+GGG 0.576183 7.3:+17401248 MS.gene04628:CDS
ATGCTAGGGAATACTGCCCT+TGG 0.578562 7.3:-17401127 None:intergenic
ACCATTACCCCTGTGTGACG+TGG 0.580899 7.3:-17401160 None:intergenic
GGTGGTTCAACAATGTTCCC+TGG 0.583355 7.3:+17402636 MS.gene04628:CDS
CGTCACACAGGGGTAATGGT+TGG 0.583763 7.3:+17401163 MS.gene04628:CDS
GTTCCGTTGTCGCAAACTAA+GGG 0.584635 7.3:-17400845 None:intergenic
TATGGTAACATTGTGTTGAG+TGG 0.586496 7.3:+17402615 MS.gene04628:CDS
GATTGATACCTTGACCATGC+CGG 0.591606 7.3:-17400867 None:intergenic
GGTAACATTGTGTTGAGTGG+TGG 0.592071 7.3:+17402618 MS.gene04628:CDS
ATGATCGGGATGGAATCTCC+TGG 0.596212 7.3:+17402531 MS.gene04628:CDS
TAGGACGTCCACGTCACACA+GGG 0.610133 7.3:+17401152 MS.gene04628:CDS
GATTCCATCCCGATCATGGA+CGG 0.611630 7.3:-17402525 None:intergenic
AAGACCTATGAGCTACCTGA+TGG 0.618966 7.3:+17402447 MS.gene04628:CDS
CAGCAGAGCGAGAAATTGTG+AGG 0.625485 7.3:+17402343 MS.gene04628:CDS
GTGTGATGTCGACATTAGGA+AGG 0.626175 7.3:+17402587 MS.gene04628:CDS
ACACTGTACTTCCTCTCTGG+TGG 0.626941 7.3:-17402729 None:intergenic
TTGCGACAACGGAACCGGCA+TGG 0.628011 7.3:+17400853 MS.gene04628:CDS
GTGGACGTCCTACTATGCTA+GGG 0.634198 7.3:-17401141 None:intergenic
TCCAAACGAAGGATTGCATG+TGG 0.636575 7.3:-17402249 None:intergenic
CCAGCCGTCCATGATCGGGA+TGG 0.642703 7.3:+17402521 MS.gene04628:CDS
GATGGACAGGTAATCACGAT+CGG 0.642938 7.3:+17402465 MS.gene04628:CDS
TATTGCTGATAGGATGAGCA+AGG 0.645350 7.3:+17402659 MS.gene04628:CDS
TGGGGACGGTGTTAGTCACA+CGG 0.647081 7.3:+17402200 MS.gene04628:CDS
CTGGGCCATCAATAGTACAC+AGG 0.648814 7.3:+17402999 MS.gene04628:CDS
GTAGGACGTCCACGTCACAC+AGG 0.654094 7.3:+17401151 MS.gene04628:CDS
TGTGCAGATGTGGATTGCAA+AGG 0.658163 7.3:+17402961 MS.gene04628:intron
GATGAAGCACAATCAAAGAG+AGG 0.658995 7.3:+17401214 MS.gene04628:CDS
CACACGGTTCCTATTTACGA+GGG 0.661422 7.3:+17402216 MS.gene04628:CDS
TTGCAGGAGATGATGCACCA+AGG 0.664250 7.3:+17401110 MS.gene04628:CDS
AGCAGAGCGAGAAATTGTGA+GGG 0.666151 7.3:+17402344 MS.gene04628:CDS
TCACACGGTTCCTATTTACG+AGG 0.670052 7.3:+17402215 MS.gene04628:CDS
GTGCTTCAGTGAGAAGAACA+GGG 0.670285 7.3:-17401351 None:intergenic
AGGTTGTAGCACCACCAGAG+AGG 0.701742 7.3:+17402718 MS.gene04628:CDS
TCATCCTATCAGCAATACCA+GGG 0.706641 7.3:-17402653 None:intergenic
GACCTGCAAGATCCAAACGA+AGG 0.709052 7.3:-17402260 None:intergenic
AGGACGTCCACGTCACACAG+GGG 0.764581 7.3:+17401153 MS.gene04628:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAATTTTTTTTTTTAC+AGG - chr7.3:17401712-17401731 None:intergenic 10.0%
!!! ATCTAATTTTTTTTTTTACA+GGG - chr7.3:17401711-17401730 None:intergenic 10.0%
!!! TGTAAAAAAAAAATAGTTTT+TGG - chr7.3:17401903-17401922 None:intergenic 10.0%
!!! TTATTTTTTCAAGTTATTAT+CGG + chr7.3:17401003-17401022 MS.gene04628:intron 10.0%
!! AAAAAACAAAAAAAATTTGC+AGG - chr7.3:17401741-17401760 None:intergenic 15.0%
!! AAAAACAAAAAAAATTTGCA+GGG - chr7.3:17401740-17401759 None:intergenic 15.0%
!! ATAATTTAAAGGCTAAAATA+TGG + chr7.3:17401648-17401667 MS.gene04628:intron 15.0%
!!! TTTTAAATTAGGCTAAAATA+TGG - chr7.3:17401967-17401986 None:intergenic 15.0%
!!! TTTTAGCCTAATTTAAAAAA+TGG + chr7.3:17401969-17401988 MS.gene04628:intron 15.0%
!! GATAATTCAGTAAATAAATC+AGG + chr7.3:17402821-17402840 MS.gene04628:intron 20.0%
!!! CAAAATCAAAATATTTTGCA+GGG + chr7.3:17401787-17401806 MS.gene04628:intron 20.0%
!!! TCAAAATCAAAATATTTTGC+AGG + chr7.3:17401786-17401805 MS.gene04628:intron 20.0%
!!! TTATGGATTTAACTGTTTTT+TGG + chr7.3:17401071-17401090 MS.gene04628:intron 20.0%
!!! TTGCTTCCATTTTTTAAATT+AGG - chr7.3:17401978-17401997 None:intergenic 20.0%
!!! TTTAGCCTTTAAATTATTAC+CGG - chr7.3:17401645-17401664 None:intergenic 20.0%
!!! TTTTTAAAATAGTCCTTGAA+GGG + chr7.3:17401756-17401775 MS.gene04628:intron 20.0%
!!! TTTTTTAAAATAGTCCTTGA+AGG + chr7.3:17401755-17401774 MS.gene04628:intron 20.0%
! AAACACCGGTAATAATTTAA+AGG + chr7.3:17401637-17401656 MS.gene04628:intron 25.0%
! AATTTCATTTCAACAAGTAC+AGG + chr7.3:17402845-17402864 MS.gene04628:intron 25.0%
! ATAACAAATGTGTTATACTG+AGG + chr7.3:17402887-17402906 MS.gene04628:intron 25.0%
!! TGAACCTATTTTGTAGTTTT+TGG - chr7.3:17401814-17401833 None:intergenic 25.0%
!!! AACTGTTTTTTGGTTGTTTT+AGG + chr7.3:17401081-17401100 MS.gene04628:intron 25.0%
!!! TTTTCAAGTTATTATCGGTT+TGG + chr7.3:17401008-17401027 MS.gene04628:intron 25.0%
AAGTACAGGTTATGAAAAGT+AGG + chr7.3:17402859-17402878 MS.gene04628:intron 30.0%
AATCCATCAAATTTACCTGT+TGG - chr7.3:17402794-17402813 None:intergenic 30.0%
ATAGGGAGAATTAAATGAGA+TGG - chr7.3:17400896-17400915 None:intergenic 30.0%
ATGCAAATCATCACAAAAGT+AGG + chr7.3:17401851-17401870 MS.gene04628:intron 30.0%
GAATGTAATCACATATGTCT+TGG + chr7.3:17402008-17402027 MS.gene04628:intron 30.0%
TGCAAATCATCACAAAAGTA+GGG + chr7.3:17401852-17401871 MS.gene04628:intron 30.0%
TGTTAGTAATTGGGATGATA+TGG + chr7.3:17401273-17401292 MS.gene04628:CDS 30.0%
TTTCCAACAGGTAAATTTGA+TGG + chr7.3:17402788-17402807 MS.gene04628:intron 30.0%
! GTGTCTGTATCTCTATTTTA+TGG + chr7.3:17401054-17401073 MS.gene04628:intron 30.0%
! TGATTTACTGTGTTTTGTGT+AGG + chr7.3:17402162-17402181 MS.gene04628:intron 30.0%
!! GTTTTGTGTAGGTATTGTTT+TGG + chr7.3:17402173-17402192 MS.gene04628:intron 30.0%
!! TTTTGAAAATAGTCCCTTCA+AGG - chr7.3:17401772-17401791 None:intergenic 30.0%
!!! TAGGTATTGTTTTGGATTCT+GGG + chr7.3:17402181-17402200 MS.gene04628:intron 30.0%
AAGGCAGAATATGATGAATC+TGG + chr7.3:17402980-17402999 MS.gene04628:CDS 35.0%
AATCATCACAAAAGTAGGGT+CGG + chr7.3:17401856-17401875 MS.gene04628:intron 35.0%
ACCTAGTAGCATGAAAATCA+AGG + chr7.3:17402698-17402717 MS.gene04628:CDS 35.0%
AGAAATTGTGAGGGATATGA+AGG + chr7.3:17402353-17402372 MS.gene04628:CDS 35.0%
AGCATGGGATTGTTAGTAAT+TGG + chr7.3:17401263-17401282 MS.gene04628:CDS 35.0%
AGGCAGAATATGATGAATCT+GGG + chr7.3:17402981-17403000 MS.gene04628:CDS 35.0%
CAAAACGAGACATATTTGCA+AGG + chr7.3:17401934-17401953 MS.gene04628:intron 35.0%
CAAGATTGAAGGATAAACAC+CGG + chr7.3:17401623-17401642 MS.gene04628:intron 35.0%
CATTTCCTGTGTACTATTGA+TGG - chr7.3:17403007-17403026 None:intergenic 35.0%
CCAAAACGAAACATATTTGC+AGG - chr7.3:17401681-17401700 None:intergenic 35.0%
GCATGGGATTGTTAGTAATT+GGG + chr7.3:17401264-17401283 MS.gene04628:CDS 35.0%
GGACAAAAAGATGCATATGT+TGG + chr7.3:17401190-17401209 MS.gene04628:CDS 35.0%
GGGACCAAAAACTACAAAAT+AGG + chr7.3:17401807-17401826 MS.gene04628:intron 35.0%
TAACAATCCCATGCTCAATT+GGG - chr7.3:17401258-17401277 None:intergenic 35.0%
TACAGGTTATGAAAAGTAGG+AGG + chr7.3:17402862-17402881 MS.gene04628:intron 35.0%
TATGGTAACATTGTGTTGAG+TGG + chr7.3:17402615-17402634 MS.gene04628:CDS 35.0%
TATTGCTCTTGATTATGAGC+AGG + chr7.3:17402389-17402408 MS.gene04628:CDS 35.0%
TCGAGTTAAATGTTGTCTCA+TGG - chr7.3:17402560-17402579 None:intergenic 35.0%
TGAAATACCCAATTGAGCAT+GGG + chr7.3:17401248-17401267 MS.gene04628:CDS 35.0%
TGAATAGCAACATACATAGC+AGG - chr7.3:17401439-17401458 None:intergenic 35.0%
TGTAATCACATATGTCTTGG+TGG + chr7.3:17402011-17402030 MS.gene04628:intron 35.0%
TTGAAATACCCAATTGAGCA+TGG + chr7.3:17401247-17401266 MS.gene04628:CDS 35.0%
TTTGCATACGTGACATATGA+TGG - chr7.3:17401838-17401857 None:intergenic 35.0%
! ACCTTGATTTTCATGCTACT+AGG - chr7.3:17402702-17402721 None:intergenic 35.0%
! CCTGCAAATATGTTTCGTTT+TGG + chr7.3:17401678-17401697 MS.gene04628:intron 35.0%
! CTTGCAAATATGTCTCGTTT+TGG - chr7.3:17401936-17401955 None:intergenic 35.0%
!!! AGCTTTTGATCAGAAGTGTT+GGG - chr7.3:17400920-17400939 None:intergenic 35.0%
!!! AGGTATTGTTTTGGATTCTG+GGG + chr7.3:17402182-17402201 MS.gene04628:intron 35.0%
!!! ATTTTCTCACGATTAGCCTT+AGG - chr7.3:17401385-17401404 None:intergenic 35.0%
!!! GTAGGTATTGTTTTGGATTC+TGG + chr7.3:17402180-17402199 MS.gene04628:intron 35.0%
!!! GTTTTTTGGTTGTTTTAGGC+TGG + chr7.3:17401085-17401104 MS.gene04628:intron 35.0%
!!! TACTTTTTCTTGTGCAGATG+TGG + chr7.3:17402951-17402970 MS.gene04628:intron 35.0%
AATGTTGTCTCATGGATACC+AGG - chr7.3:17402552-17402571 None:intergenic 40.0%
AGTGCATATCCCTCGTAAAT+AGG - chr7.3:17402228-17402247 None:intergenic 40.0%
CGGTGTTTATCCTTCAATCT+TGG - chr7.3:17401625-17401644 None:intergenic 40.0%
CTAACAATCCCATGCTCAAT+TGG - chr7.3:17401259-17401278 None:intergenic 40.0%
GACATTAGGAAGGATCTCTA+TGG + chr7.3:17402597-17402616 MS.gene04628:CDS 40.0%
GAGGGATATGAAGGAGAAAT+TGG + chr7.3:17402362-17402381 MS.gene04628:CDS 40.0%
GATGAAGCACAATCAAAGAG+AGG + chr7.3:17401214-17401233 MS.gene04628:CDS 40.0%
TATTGCTGATAGGATGAGCA+AGG + chr7.3:17402659-17402678 MS.gene04628:CDS 40.0%
TCATCCTATCAGCAATACCA+GGG - chr7.3:17402656-17402675 None:intergenic 40.0%
TGAAGTGTGATGTCGACATT+AGG + chr7.3:17402583-17402602 MS.gene04628:CDS 40.0%
! AGTATGTAGCATCGAAACGT+TGG - chr7.3:17402058-17402077 None:intergenic 40.0%
! TGAAGCACCTCTTAATCCTA+AGG + chr7.3:17401366-17401385 MS.gene04628:CDS 40.0%
!! ATGAAGATTTTAACCGAGCG+TGG + chr7.3:17402303-17402322 MS.gene04628:CDS 40.0%
!! CGATTAGCCTTAGGATTAAG+AGG - chr7.3:17401376-17401395 None:intergenic 40.0%
!! GAGCTTTTGATCAGAAGTGT+TGG - chr7.3:17400921-17400940 None:intergenic 40.0%
!!! ATTGTTTTGGATTCTGGGGA+CGG + chr7.3:17402186-17402205 MS.gene04628:CDS 40.0%
!!! GCTTTTGATCAGAAGTGTTG+GGG - chr7.3:17400919-17400938 None:intergenic 40.0%
!!! TTGTTTTAGGCTGGTTTTGC+AGG + chr7.3:17401094-17401113 MS.gene04628:intron 40.0%
AAGACCTATGAGCTACCTGA+TGG + chr7.3:17402447-17402466 MS.gene04628:CDS 45.0%
AATAGAGATACAGACACCGC+CGG - chr7.3:17401051-17401070 None:intergenic 45.0%
AATTTCTCGCTCTGCTGAAG+TGG - chr7.3:17402340-17402359 None:intergenic 45.0%
ACACTCGACACCAAGATTGA+AGG + chr7.3:17401612-17401631 MS.gene04628:intron 45.0%
ACGGCTGGAACAAAACTTCT+GGG - chr7.3:17402509-17402528 None:intergenic 45.0%
AGCAGAGCGAGAAATTGTGA+GGG + chr7.3:17402344-17402363 MS.gene04628:CDS 45.0%
ATCCTTCGTTTGGATCTTGC+AGG + chr7.3:17402258-17402277 MS.gene04628:CDS 45.0%
ATCGTGATTACCTGTCCATC+AGG - chr7.3:17402465-17402484 None:intergenic 45.0%
ATCTCTCAGCACTTTCCAAC+AGG + chr7.3:17402776-17402795 MS.gene04628:CDS 45.0%
CACACGGTTCCTATTTACGA+GGG + chr7.3:17402216-17402235 MS.gene04628:CDS 45.0%
CTCATCCTATCAGCAATACC+AGG - chr7.3:17402657-17402676 None:intergenic 45.0%
GAGCAAGGAGATTACAGCAT+TGG + chr7.3:17402674-17402693 MS.gene04628:CDS 45.0%
GATGGACAGGTAATCACGAT+CGG + chr7.3:17402465-17402484 MS.gene04628:CDS 45.0%
GATTGATACCTTGACCATGC+CGG - chr7.3:17400870-17400889 None:intergenic 45.0%
GCAGTATTCCCTAGCATAGT+AGG + chr7.3:17401133-17401152 MS.gene04628:CDS 45.0%
GGAACAAAACTTCTGGGCAT+CGG - chr7.3:17402503-17402522 None:intergenic 45.0%
GGGATGATATGGAGAAGATC+TGG + chr7.3:17401284-17401303 MS.gene04628:CDS 45.0%
GGTAACATTGTGTTGAGTGG+TGG + chr7.3:17402618-17402637 MS.gene04628:CDS 45.0%
GTGCTTCAGTGAGAAGAACA+GGG - chr7.3:17401354-17401373 None:intergenic 45.0%
GTGCTTTCACTTTATGCGAG+TGG + chr7.3:17401463-17401482 MS.gene04628:CDS 45.0%
GTGTGATGTCGACATTAGGA+AGG + chr7.3:17402587-17402606 MS.gene04628:CDS 45.0%
GTTCCGTTGTCGCAAACTAA+GGG - chr7.3:17400848-17400867 None:intergenic 45.0%
TCACACGGTTCCTATTTACG+AGG + chr7.3:17402215-17402234 MS.gene04628:CDS 45.0%
TCCAAACGAAGGATTGCATG+TGG - chr7.3:17402252-17402271 None:intergenic 45.0%
TCCACATGCAATCCTTCGTT+TGG + chr7.3:17402248-17402267 MS.gene04628:CDS 45.0%
TCTGATCAAAAGCTCGTGTC+TGG + chr7.3:17400926-17400945 MS.gene04628:intron 45.0%
TGTTCCCTGGTATTGCTGAT+AGG + chr7.3:17402649-17402668 MS.gene04628:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+AGG + chr7.3:17402741-17402760 MS.gene04628:CDS 45.0%
! ACAGGGGTAATGGTTGGAAT+GGG + chr7.3:17401169-17401188 MS.gene04628:CDS 45.0%
! AGAAGAACAGGGTGTTCTTC+AGG - chr7.3:17401343-17401362 None:intergenic 45.0%
! AGGAAGTACAGTGTCTGGAT+TGG + chr7.3:17402738-17402757 MS.gene04628:CDS 45.0%
! AGTGCTGAGAGATGCCAAAA+TGG - chr7.3:17402769-17402788 None:intergenic 45.0%
! GCCATGTGATGATGCAAACT+AGG + chr7.3:17402115-17402134 MS.gene04628:intron 45.0%
! GCCTAGTTTGCATCATCACA+TGG - chr7.3:17402119-17402138 None:intergenic 45.0%
! TGTGCAGATGTGGATTGCAA+AGG + chr7.3:17402961-17402980 MS.gene04628:intron 45.0%
!! CTGGATTGGAGGTTCCATTT+TGG + chr7.3:17402752-17402771 MS.gene04628:CDS 45.0%
!! GATCAGAAGTGTTGGGGATA+GGG - chr7.3:17400913-17400932 None:intergenic 45.0%
!! TGATCAGAAGTGTTGGGGAT+AGG - chr7.3:17400914-17400933 None:intergenic 45.0%
!! TTAGTTTGCGACAACGGAAC+CGG + chr7.3:17400848-17400867 MS.gene04628:CDS 45.0%
!!! TAAAAAAAAAAATTAGATTT+TGG + chr7.3:17401713-17401732 MS.gene04628:intron 5.0%
ACACTGTACTTCCTCTCTGG+TGG - chr7.3:17402732-17402751 None:intergenic 50.0%
AGGAGATTCCATCCCGATCA+TGG - chr7.3:17402532-17402551 None:intergenic 50.0%
ATGATCGGGATGGAATCTCC+TGG + chr7.3:17402531-17402550 MS.gene04628:CDS 50.0%
ATGCTAGGGAATACTGCCCT+TGG - chr7.3:17401130-17401149 None:intergenic 50.0%
CAGACACTGTACTTCCTCTC+TGG - chr7.3:17402735-17402754 None:intergenic 50.0%
CAGCAGAGCGAGAAATTGTG+AGG + chr7.3:17402343-17402362 MS.gene04628:CDS 50.0%
CTGGGCCATCAATAGTACAC+AGG + chr7.3:17402999-17403018 MS.gene04628:CDS 50.0%
CTGTCCATCAGGTAGCTCAT+AGG - chr7.3:17402454-17402473 None:intergenic 50.0%
GACCTGCAAGATCCAAACGA+AGG - chr7.3:17402263-17402282 None:intergenic 50.0%
GACGGCTGGAACAAAACTTC+TGG - chr7.3:17402510-17402529 None:intergenic 50.0%
GATTCCATCCCGATCATGGA+CGG - chr7.3:17402528-17402547 None:intergenic 50.0%
GGATGTGTCAGTGTCGTATC+CGG + chr7.3:17401029-17401048 MS.gene04628:intron 50.0%
GGTGCTTCAGTGAGAAGAAC+AGG - chr7.3:17401355-17401374 None:intergenic 50.0%
GGTGGTTCAACAATGTTCCC+TGG + chr7.3:17402636-17402655 MS.gene04628:CDS 50.0%
GGTTCCGTTGTCGCAAACTA+AGG - chr7.3:17400849-17400868 None:intergenic 50.0%
GTGGACGTCCTACTATGCTA+GGG - chr7.3:17401144-17401163 None:intergenic 50.0%
TATGCGAGTGGTCGTACAAC+TGG + chr7.3:17401475-17401494 MS.gene04628:CDS 50.0%
TGCAGGAGATGATGCACCAA+GGG + chr7.3:17401111-17401130 MS.gene04628:CDS 50.0%
TGTCCGACACAGATCAGTGT+CGG + chr7.3:17400949-17400968 MS.gene04628:intron 50.0%
TGTCCGACACTGATCTGTGT+CGG - chr7.3:17400955-17400974 None:intergenic 50.0%
TTGCAGGAGATGATGCACCA+AGG + chr7.3:17401110-17401129 MS.gene04628:CDS 50.0%
TTGTTCCAGCCGTCCATGAT+CGG + chr7.3:17402516-17402535 MS.gene04628:CDS 50.0%
! CACAGGGGTAATGGTTGGAA+TGG + chr7.3:17401168-17401187 MS.gene04628:CDS 50.0%
! CAGAGAGGAAGTACAGTGTC+TGG + chr7.3:17402733-17402752 MS.gene04628:CDS 50.0%
! CTATGAGCTACCTGATGGAC+AGG + chr7.3:17402452-17402471 MS.gene04628:CDS 50.0%
!! CAATCTTGGTGTCGAGTGTC+TGG - chr7.3:17401611-17401630 None:intergenic 50.0%
!! CAGCCCTTAGTTTGCGACAA+CGG + chr7.3:17400842-17400861 MS.gene04628:CDS 50.0%
ACCATTACCCCTGTGTGACG+TGG - chr7.3:17401163-17401182 None:intergenic 55.0%
AGGTTGTAGCACCACCAGAG+AGG + chr7.3:17402718-17402737 MS.gene04628:CDS 55.0%
CGTGGACGTCCTACTATGCT+AGG - chr7.3:17401145-17401164 None:intergenic 55.0%
TAGGACGTCCACGTCACACA+GGG + chr7.3:17401152-17401171 MS.gene04628:CDS 55.0%
TCCACGTCACACAGGGGTAA+TGG + chr7.3:17401159-17401178 MS.gene04628:CDS 55.0%
TGTGTCAGTGTCGTATCCGG+CGG + chr7.3:17401032-17401051 MS.gene04628:intron 55.0%
TGTTCCAGCCGTCCATGATC+GGG + chr7.3:17402517-17402536 MS.gene04628:CDS 55.0%
! CGTCACACAGGGGTAATGGT+TGG + chr7.3:17401163-17401182 MS.gene04628:CDS 55.0%
! GGTGAAAGTGTAGCCACGCT+CGG - chr7.3:17402319-17402338 None:intergenic 55.0%
! TGGGGACGGTGTTAGTCACA+CGG + chr7.3:17402200-17402219 MS.gene04628:CDS 55.0%
AGGACGTCCACGTCACACAG+GGG + chr7.3:17401153-17401172 MS.gene04628:CDS 60.0%
CAACGGAACCGGCATGGTCA+AGG + chr7.3:17400859-17400878 MS.gene04628:CDS 60.0%
GTAGGACGTCCACGTCACAC+AGG + chr7.3:17401151-17401170 MS.gene04628:CDS 60.0%
TTGCGACAACGGAACCGGCA+TGG + chr7.3:17400853-17400872 MS.gene04628:CDS 60.0%
CCAGCCGTCCATGATCGGGA+TGG + chr7.3:17402521-17402540 MS.gene04628:CDS 65.0%
CCATCCCGATCATGGACGGC+TGG - chr7.3:17402524-17402543 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 17400821 17403033 17400821 ID=MS.gene04628
chr7.3 mRNA 17400821 17403033 17400821 ID=MS.gene04628.t1;Parent=MS.gene04628
chr7.3 exon 17400821 17400880 17400821 ID=MS.gene04628.t1.exon1;Parent=MS.gene04628.t1
chr7.3 CDS 17400821 17400880 17400821 ID=cds.MS.gene04628.t1;Parent=MS.gene04628.t1
chr7.3 exon 17401103 17401496 17401103 ID=MS.gene04628.t1.exon2;Parent=MS.gene04628.t1
chr7.3 CDS 17401103 17401496 17401103 ID=cds.MS.gene04628.t1;Parent=MS.gene04628.t1
chr7.3 exon 17402184 17402797 17402184 ID=MS.gene04628.t1.exon3;Parent=MS.gene04628.t1
chr7.3 CDS 17402184 17402797 17402184 ID=cds.MS.gene04628.t1;Parent=MS.gene04628.t1
chr7.3 exon 17402968 17403033 17402968 ID=MS.gene04628.t1.exon4;Parent=MS.gene04628.t1
chr7.3 CDS 17402968 17403033 17402968 ID=cds.MS.gene04628.t1;Parent=MS.gene04628.t1
Gene Sequence

>MS.gene04628

ATGGCAGAATCAGAAGATATTCAGCCCTTAGTTTGCGACAACGGAACCGGCATGGTCAAGGTATCAATCAATCCATCTCATTTAATTCTCCCTATCCCCAACACTTCTGATCAAAAGCTCGTGTCTGGTGTCCGACACAGATCAGTGTCGGACATCGACACATATGATTACATTGATTTATATTATTTTTTCAAGTTATTATCGGTTTGGATGTGTCAGTGTCGTATCCGGCGGTGTCTGTATCTCTATTTTATGGATTTAACTGTTTTTTGGTTGTTTTAGGCTGGTTTTGCAGGAGATGATGCACCAAGGGCAGTATTCCCTAGCATAGTAGGACGTCCACGTCACACAGGGGTAATGGTTGGAATGGGACAAAAAGATGCATATGTTGGTGATGAAGCACAATCAAAGAGAGGTATTTTGACATTGAAATACCCAATTGAGCATGGGATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCATACTTTCTACAATGAACTTCGTGTTGCTCCTGAAGAACACCCTGTTCTTCTCACTGAAGCACCTCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCACTTTATGCGAGTGGTCGTACAACTGGTAAATTACTTCTTCTTTGATGTTGCATATATAAATTTTGTTCTATTCTAGTTTCGTAAATTGTAAATTTCATTTCATTCTGAGTTTTGTATGAATCACTACACACAGACACCAGACACTCGACACCAAGATTGAAGGATAAACACCGGTAATAATTTAAAGGCTAAAATATGGTTTTAGTCCTGCAAATATGTTTCGTTTTGGTTTTAGTCCCTGTAAAAAAAAAAATTAGATTTTGGTCCCTGCAAATTTTTTTTGTTTTTTAAAATAGTCCTTGAAGGGACTATTTTCAAAATCAAAATATTTTGCAGGGACCAAAAACTACAAAATAGGTTCAGCCATCATATGTCACGTATGCAAATCATCACAAAAGTAGGGTCGGAGACTATTTTCAAAAACAAAACCAAAAACTATTTTTTTTTTACAGAGACTAAAACCAAAACGAGACATATTTGCAAGGACTAAAACCATATTTTAGCCTAATTTAAAAAATGGAAGCAATTGAATCATTGAATGTAATCACATATGTCTTGGTGGTGTTAGATATTGACTTTCAATCCAACGTTTCGATGCTACATACTTTTGTGTAATGAATGATGAATCTGATTTGATAGAGTAGCCATGTGATGATGCAAACTAGGCATTGAGATTGAAATGAGTTGATGTGATTTACTGTGTTTTGTGTAGGTATTGTTTTGGATTCTGGGGACGGTGTTAGTCACACGGTTCCTATTTACGAGGGATATGCACTTCCACATGCAATCCTTCGTTTGGATCTTGCAGGTCGTGATCTCACTGATGCATTGATGAAGATTTTAACCGAGCGTGGCTACACTTTCACCACTTCAGCAGAGCGAGAAATTGTGAGGGATATGAAGGAGAAATTGGCTTATATTGCTCTTGATTATGAGCAGGAGTTAGAAACTGCAAAGACTAGCTCAGCTGTTGAGAAGACCTATGAGCTACCTGATGGACAGGTAATCACGATCGGTGCTGAAAGATTCCGATGCCCAGAAGTTTTGTTCCAGCCGTCCATGATCGGGATGGAATCTCCTGGTATCCATGAGACAACATTTAACTCGATCATGAAGTGTGATGTCGACATTAGGAAGGATCTCTATGGTAACATTGTGTTGAGTGGTGGTTCAACAATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATTACAGCATTGGCACCTAGTAGCATGAAAATCAAGGTTGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCTCTCAGCACTTTCCAACAGGTAAATTTGATGGATTTTGAAATGATAATTCAGTAAATAAATCAGGAAATTTCATTTCAACAAGTACAGGTTATGAAAAGTAGGAGGAAATAACAAATGTGTTATACTGAGGCTTAGTTGTGTCATTTGTAATGTGTTATTTTCTGATATGTTTACTTTTTCTTGTGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGGCCATCAATAGTACACAGGAAATGCTTCTAA

Protein sequence

>MS.gene04628.t1

MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF