AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45493

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45493.t1 MTR_2g096840 100.000 377 0 0 1 377 1 377 0.0 784
MS.gene45493.t1 MTR_0015s0130 98.674 377 5 0 1 377 1 377 0.0 776
MS.gene45493.t1 MTR_7g026230 97.082 377 11 0 1 377 1 377 0.0 768
MS.gene45493.t1 MTR_6g004000 97.082 377 11 0 1 377 1 377 0.0 768
MS.gene45493.t1 MTR_7g093260 96.021 377 15 0 1 377 1 377 0.0 765
MS.gene45493.t1 MTR_3g095530 94.960 377 19 0 1 377 1 377 0.0 761
MS.gene45493.t1 MTR_2g008050 93.634 377 24 0 1 377 1 377 0.0 752
MS.gene45493.t1 MTR_7g027185 42.480 379 204 3 10 374 7 385 1.41e-118 349
MS.gene45493.t1 MTR_7g027185 43.662 355 187 2 10 351 7 361 7.33e-116 341
MS.gene45493.t1 MTR_7g027185 46.580 307 162 1 10 314 7 313 2.75e-108 320
MS.gene45493.t1 MTR_5g066400 37.360 447 206 11 1 376 1 444 4.42e-93 286
MS.gene45493.t1 MTR_8g464900 36.574 432 201 10 1 362 1 429 1.71e-86 268
MS.gene45493.t1 MTR_5g066400 34.753 446 191 11 1 376 1 416 2.52e-80 252
MS.gene45493.t1 MTR_8g089630 34.550 411 219 8 10 372 10 418 5.49e-72 231
MS.gene45493.t1 MTR_5g066400 34.250 400 192 10 1 332 1 397 4.11e-69 223
MS.gene45493.t1 MTR_3g030550 37.105 380 213 9 7 377 1 363 1.07e-67 218
MS.gene45493.t1 MTR_2g445210 28.132 423 238 7 8 366 6 426 3.20e-55 188
MS.gene45493.t1 MTR_8g007440 35.227 264 144 7 77 319 9 266 3.45e-46 159
MS.gene45493.t1 MTR_2g445210 26.613 372 207 7 8 315 6 375 3.38e-41 149
MS.gene45493.t1 MTR_3g010170 30.303 297 183 9 91 371 179 467 2.14e-40 149
MS.gene45493.t1 MTR_8g070520 31.058 293 175 10 91 366 187 469 7.96e-36 136
MS.gene45493.t1 MTR_8g070520 30.576 278 167 9 91 352 187 454 1.62e-32 127
MS.gene45493.t1 MTR_3g067945 28.968 252 160 7 9 245 21 268 9.70e-22 97.4
MS.gene45493.t1 MTR_3g067945 33.607 122 78 2 250 368 586 707 4.69e-16 80.1
MS.gene45493.t1 MTR_8g008540 70.270 37 11 0 340 376 41 77 4.15e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45493.t1 AT3G12110 96.552 377 13 0 1 377 1 377 0.0 765
MS.gene45493.t1 AT3G53750 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45493.t1 AT3G53750 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45493.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45493.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45493.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45493.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45493.t1 AT5G59370 96.817 377 12 0 1 377 1 377 0.0 762
MS.gene45493.t1 AT5G59370 96.817 377 12 0 1 377 1 377 0.0 762
MS.gene45493.t1 AT3G46520 96.552 377 13 0 1 377 1 377 0.0 761
MS.gene45493.t1 AT3G46520 96.552 377 13 0 1 377 1 377 0.0 761
MS.gene45493.t1 AT5G09810 94.960 377 19 0 1 377 1 377 0.0 759
MS.gene45493.t1 AT1G49240 92.573 377 28 0 1 377 1 377 0.0 745
MS.gene45493.t1 AT3G18780 92.308 377 29 0 1 377 1 377 0.0 744
MS.gene45493.t1 AT3G18780 92.308 377 29 0 1 377 1 377 0.0 744
MS.gene45493.t1 AT3G18780 92.201 359 28 0 1 359 1 359 0.0 703
MS.gene45493.t1 AT2G42100 83.967 368 59 0 10 377 11 378 0.0 673
MS.gene45493.t1 AT2G42090 70.000 370 106 1 7 376 1 365 0.0 564
MS.gene45493.t1 AT2G42170 77.108 332 73 1 46 377 1 329 0.0 556
MS.gene45493.t1 AT2G42170 77.108 332 73 1 46 377 1 329 0.0 556
MS.gene45493.t1 AT2G42170 76.923 312 69 1 46 357 1 309 0.0 518
MS.gene45493.t1 AT2G42170 76.923 312 69 1 46 357 1 309 0.0 518
MS.gene45493.t1 AT2G42170 76.991 226 49 1 152 377 9 231 2.18e-130 373
MS.gene45493.t1 AT3G27000 43.536 379 200 4 10 374 7 385 4.89e-121 355
MS.gene45493.t1 AT1G18450 37.472 443 207 9 1 376 1 440 1.50e-95 292
MS.gene45493.t1 AT1G13180 34.223 412 219 9 10 372 9 417 2.76e-72 232
MS.gene45493.t1 AT3G60830 37.467 379 213 9 7 377 1 363 5.82e-67 216
MS.gene45493.t1 AT3G33520 30.166 421 236 7 10 377 5 420 5.44e-58 194
MS.gene45493.t1 AT5G56180 31.338 284 170 9 91 358 50 324 1.95e-35 132
MS.gene45493.t1 AT5G56180 31.338 284 170 9 91 358 182 456 1.19e-34 133
MS.gene45493.t1 AT3G12380 29.183 257 159 6 9 245 21 274 1.21e-24 106
MS.gene45493.t1 AT3G12380 32.738 168 106 4 207 368 550 716 3.86e-17 83.6
MS.gene45493.t1 AT3G12380 29.020 255 156 6 9 245 21 268 4.83e-24 104
MS.gene45493.t1 AT3G12380 32.738 168 106 4 207 368 544 710 3.74e-17 83.6
MS.gene45493.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.08e-23 95.1
MS.gene45493.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.08e-23 95.1
MS.gene45493.t1 AT5G56180 32.178 202 114 8 91 281 182 371 2.08e-19 89.4
MS.gene45493.t1 AT1G73910 29.268 123 71 2 1 107 1 123 3.00e-12 64.7

Find 96 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGATCTTCATGCTGCTT+GGG 0.250595 2.1:+6799849 None:intergenic
AGCAAAACCGGGTGCTCCTC+TGG 0.272892 2.1:+6800788 None:intergenic
TGCTATGTATGTTGCTATTC+AGG 0.277628 2.1:-6800690 MS.gene45493:CDS
CAACCACTGGTCTGTGATAA+TGG 0.278942 2.1:-6801398 MS.gene45493:CDS
AACATTTAGGCTGGATTTGC+TGG 0.289528 2.1:-6801034 MS.gene45493:intron
GGGATGACATGGAGAAAATT+TGG 0.308086 2.1:-6800844 MS.gene45493:CDS
AGGGCATATCCTTCATAAAT+AGG 0.317673 2.1:+6800322 None:intergenic
CACACGGAGTTCATTGTAAA+AGG 0.330285 2.1:+6800814 None:intergenic
ACCTTGATCTTCATGCTGCT+TGG 0.336588 2.1:+6799848 None:intergenic
AGCATGGTATTGTGAGTAAC+TGG 0.340011 2.1:-6800865 MS.gene45493:CDS
AATATGTGCAGGTATTGTTC+TGG 0.386737 2.1:-6800374 MS.gene45493:intron
GGTGCTTCAGTGAGCAAAAC+CGG 0.396077 2.1:+6800776 None:intergenic
CTCACAATACCATGCTCAAT+TGG 0.397001 2.1:+6800872 None:intergenic
CAAGCTCTTGCTCAAAATCA+AGG 0.399460 2.1:+6800152 None:intergenic
CTCATTCTGTCAGCAATGCC+AGG 0.400398 2.1:+6799893 None:intergenic
ATCCTTCGTCTTGATTTAGC+AGG 0.412905 2.1:-6800289 MS.gene45493:CDS
GATGGCCAGATCATCACTAT+TGG 0.420978 2.1:-6800082 MS.gene45493:CDS
CCGAGAGAAAATACAGTGTC+TGG 0.425088 2.1:-6799814 MS.gene45493:CDS
GCAAAACCGGGTGCTCCTCT+GGG 0.429592 2.1:+6800789 None:intergenic
TATGGAAATATTGTCCTTAG+TGG 0.444109 2.1:-6799932 MS.gene45493:CDS
CACTGGTGTGATGGTTGGCA+TGG 0.449957 2.1:-6800960 MS.gene45493:CDS
GATATCAGAAAGGACTTGTA+TGG 0.450042 2.1:-6799950 MS.gene45493:CDS
AGTGCTAAGAGAAGCTAAGA+TGG 0.454030 2.1:+6799781 None:intergenic
TATGCCAGTGGTCGAACAAC+CGG 0.454712 2.1:-6800653 MS.gene45493:intron
CTTGATCTTCATGCTGCTTG+GGG 0.455780 2.1:+6799850 None:intergenic
CAGCTCCAATAGTGATGATC+TGG 0.458059 2.1:+6800077 None:intergenic
GCTGTGTTTCCTAGCATTGT+TGG 0.477335 2.1:-6800995 MS.gene45493:CDS
TAATGGAACAGGAATGGTTA+AGG 0.478719 2.1:-6801381 MS.gene45493:intron
CTGGTCTGTGATAATGGAAC+AGG 0.481376 2.1:-6801392 MS.gene45493:CDS
AAATACAGTGTCTGGATTGG+TGG 0.485676 2.1:-6799806 MS.gene45493:CDS
GCAGGTATTGTTCTGGACTC+TGG 0.492720 2.1:-6800367 MS.gene45493:intron
ATAGTGATGATCTGGCCATC+AGG 0.494142 2.1:+6800085 None:intergenic
AAGGCCGAGTACGATGAATC+TGG 0.498285 2.1:-6799611 MS.gene45493:CDS
AAGAATAACCACGCTCGGTA+AGG 0.505013 2.1:+6800236 None:intergenic
ATGAAAATCCTTACCGAGCG+TGG 0.509930 2.1:-6800244 MS.gene45493:CDS
AGAAAATACAGTGTCTGGAT+TGG 0.510090 2.1:-6799809 MS.gene45493:CDS
TAGAGTCAATATACCACGCT+TGG 0.516667 2.1:+6800901 None:intergenic
CACACTGTGCCTATTTATGA+AGG 0.522782 2.1:-6800331 MS.gene45493:CDS
ATGCTAGGAAACACAGCCCT+TGG 0.526579 2.1:+6801001 None:intergenic
TACAATTTCACGCTCAGCTG+TGG 0.531096 2.1:+6800207 None:intergenic
TGCTGGAGATGATGCTCCAA+GGG 0.531721 2.1:-6801017 MS.gene45493:CDS
TCAGCCTTCCATGGTTGGAA+TGG 0.534177 2.1:-6800026 MS.gene45493:CDS
GGTGGTACTACTATGTTCCC+TGG 0.534257 2.1:-6799911 MS.gene45493:CDS
CGATTAGCCTTTGGATTGAG+CGG 0.541575 2.1:+6800755 None:intergenic
GACCAGTGGTTGAATATCCT+CGG 0.542292 2.1:+6801409 None:intergenic
CGCCGAGGATATTCAACCAC+TGG 0.542623 2.1:-6801411 MS.gene45493:CDS
CCCAAGCAGCATGAAGATCA+AGG 0.543751 2.1:-6799849 MS.gene45493:CDS
TCCTTCGTCTTGATTTAGCA+GGG 0.546953 2.1:-6800288 MS.gene45493:CDS
ATTGTTCTGGACTCTGGAGA+TGG 0.549481 2.1:-6800361 MS.gene45493:CDS
TGAAATTGTAAGAGATGTGA+AGG 0.550481 2.1:-6800194 MS.gene45493:CDS
CGTGGTCGACCAACAATGCT+AGG 0.552232 2.1:+6800986 None:intergenic
ACATAGTAGTACCACCACTA+AGG 0.559599 2.1:+6799918 None:intergenic
TTGCTGGAGATGATGCTCCA+AGG 0.560432 2.1:-6801018 MS.gene45493:CDS
GACGAAGGATAGCATGTGGA+AGG 0.560879 2.1:+6800302 None:intergenic
CTAACCGGTTGTTCGACCAC+TGG 0.563611 2.1:+6800649 None:intergenic
AAGCTCTTGCTCAAAATCAA+GGG 0.566750 2.1:+6800153 None:intergenic
ACCACGCCACACTGGTGTGA+TGG 0.574183 2.1:-6800969 MS.gene45493:CDS
CTAAAATATCCAATTGAGCA+TGG 0.574515 2.1:-6800881 MS.gene45493:CDS
TGTGGCCCCAGAGGAGCACC+CGG 0.576326 2.1:-6800795 MS.gene45493:CDS
TGAATAGCAACATACATAGC+AGG 0.576757 2.1:+6800692 None:intergenic
CGCCACACTGGTGTGATGGT+TGG 0.577341 2.1:-6800965 MS.gene45493:CDS
GTGCTTCAGTGAGCAAAACC+GGG 0.578129 2.1:+6800777 None:intergenic
GCTTCCATTCCAACCATGGA+AGG 0.580286 2.1:+6800022 None:intergenic
GGTGCTCCTCTGGGGCCACA+CGG 0.580962 2.1:+6800798 None:intergenic
AACAGCTTCCATTCCAACCA+TGG 0.591828 2.1:+6800018 None:intergenic
GAGCAAGGAAATTACCGCGT+TGG 0.592403 2.1:-6799873 MS.gene45493:CDS
GGAAATATTGTCCTTAGTGG+TGG 0.594437 2.1:-6799929 MS.gene45493:CDS
AGTGAAAGAATAACCACGCT+CGG 0.601145 2.1:+6800231 None:intergenic
AGGACCAGATTCATCGTACT+CGG 0.601521 2.1:+6799607 None:intergenic
TGTGAGTAACTGGGATGACA+TGG 0.601686 2.1:-6800855 MS.gene45493:CDS
TGAGCGTTTCCGTTGTCCTG+AGG 0.602279 2.1:-6800056 MS.gene45493:CDS
GTTGGTCGACCACGCCACAC+TGG 0.610992 2.1:-6800977 MS.gene45493:CDS
ATGGTTGGAATGGAAGCTGT+TGG 0.612805 2.1:-6800016 MS.gene45493:CDS
TGAAGCACCGCTCAATCCAA+AGG 0.625231 2.1:-6800762 MS.gene45493:CDS
CATGCTGCTTGGGGCCAACG+CGG 0.625414 2.1:+6799859 None:intergenic
CATTGCTGACAGAATGAGCA+AGG 0.625589 2.1:-6799888 MS.gene45493:CDS
ACCATCACACCAGTGTGGCG+TGG 0.628231 2.1:+6800968 None:intergenic
CTGTGATAATGGAACAGGAA+TGG 0.632340 2.1:-6801387 MS.gene45493:CDS
CAAAACCGGGTGCTCCTCTG+GGG 0.638105 2.1:+6800790 None:intergenic
TCAAGACGAAGGATAGCATG+TGG 0.640472 2.1:+6800298 None:intergenic
AAGAGTTATGAACTTCCTGA+TGG 0.641331 2.1:-6800100 MS.gene45493:CDS
TCATTCTGTCAGCAATGCCA+GGG 0.641800 2.1:+6799894 None:intergenic
ACTGGTGTGATGGTTGGCAT+GGG 0.642331 2.1:-6800959 MS.gene45493:CDS
GTTCTATCGCTCTATGCCAG+TGG 0.644036 2.1:-6800665 MS.gene45493:CDS
TGAACTCCGTGTGGCCCCAG+AGG 0.648993 2.1:-6800804 MS.gene45493:CDS
AAAGACAATGGCAGACGCCG+AGG 0.653794 2.1:-6801426 None:intergenic
ACGAAGGATAGCATGTGGAA+GGG 0.659324 2.1:+6800303 None:intergenic
GATGAAGCTCAGTCCAAGCG+TGG 0.663966 2.1:-6800914 MS.gene45493:CDS
AATGCAGATGTGGATTGCAA+AGG 0.664746 2.1:-6799630 MS.gene45493:intron
GTGTGATGTTGATATCAGAA+AGG 0.677167 2.1:-6799960 MS.gene45493:CDS
GTTCCATTATCACAGACCAG+TGG 0.693343 2.1:+6801395 None:intergenic
TGCCAACCATCACACCAGTG+TGG 0.706399 2.1:+6800963 None:intergenic
GCATGGTATTGTGAGTAACT+GGG 0.709006 2.1:-6800864 MS.gene45493:CDS
GCCCTGCTAAATCAAGACGA+AGG 0.714666 2.1:+6800287 None:intergenic
CTTCATAAATAGGCACAGTG+TGG 0.723850 2.1:+6800332 None:intergenic
AAGCAGCATGAAGATCAAGG+TGG 0.767710 2.1:-6799846 MS.gene45493:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGGAAAATAGATAAAAA+TGG - chr2.1:6800534-6800553 MS.gene45493:intron 15.0%
!!! AAAATGGATTTCAAAAAATT+TGG - chr2.1:6800550-6800569 MS.gene45493:intron 15.0%
!! ATGTCAAAAAAAGAATTCTA+AGG + chr2.1:6801300-6801319 None:intergenic 20.0%
!! TGAAGTCTAGTTAAAAAAAA+AGG - chr2.1:6800517-6800536 MS.gene45493:intron 20.0%
!!! TTGACATGTTTGATTTATTT+GGG - chr2.1:6801313-6801332 MS.gene45493:intron 20.0%
!!! TTTGACATGTTTGATTTATT+TGG - chr2.1:6801312-6801331 MS.gene45493:intron 20.0%
! AAAATTTGGTCCTATATCTA+TGG - chr2.1:6800564-6800583 MS.gene45493:intron 25.0%
! AACTCTATATTAATATGTGC+AGG - chr2.1:6800614-6800633 MS.gene45493:intron 25.0%
! CATAAAATAGCCATAGATAT+AGG + chr2.1:6800577-6800596 None:intergenic 25.0%
!! AGTACTAAATGTTGTTGTTA+AGG - chr2.1:6799794-6799813 MS.gene45493:CDS 25.0%
!! TATCTTTTCTGTTTTCTCTT+CGG - chr2.1:6799699-6799718 MS.gene45493:intron 25.0%
!!! ATGTTCTACGTTTTTTATAC+TGG - chr2.1:6800420-6800439 MS.gene45493:intron 25.0%
!!! TATTTTTGAAAATGCAGATG+TGG - chr2.1:6801359-6801378 MS.gene45493:intron 25.0%
AAAAATAAGCATGCATTGCA+AGG - chr2.1:6800448-6800467 MS.gene45493:intron 30.0%
CTAAAATATCCAATTGAGCA+TGG - chr2.1:6800118-6800137 MS.gene45493:CDS 30.0%
TAAATCGAGAAATGACTAAC+CGG + chr2.1:6800368-6800387 None:intergenic 30.0%
TATGGAAATATTGTCCTTAG+TGG - chr2.1:6801067-6801086 MS.gene45493:intron 30.0%
TCACAGCAAATTAGTAGAAA+GGG + chr2.1:6799924-6799943 None:intergenic 30.0%
TGAAATTGTAAGAGATGTGA+AGG - chr2.1:6800805-6800824 MS.gene45493:CDS 30.0%
TTCACAGCAAATTAGTAGAA+AGG + chr2.1:6799925-6799944 None:intergenic 30.0%
! CATTGTGATTTGCAACATTT+AGG - chr2.1:6799952-6799971 MS.gene45493:CDS 30.0%
!! TCAGTTTGCTAATGGATATA+TGG - chr2.1:6800472-6800491 MS.gene45493:intron 30.0%
AAGAGTTATGAACTTCCTGA+TGG - chr2.1:6800899-6800918 MS.gene45493:CDS 35.0%
AAGCTCTTGCTCAAAATCAA+GGG + chr2.1:6800849-6800868 None:intergenic 35.0%
AGAAAATACAGTGTCTGGAT+TGG - chr2.1:6801190-6801209 MS.gene45493:intron 35.0%
AGGGCATATCCTTCATAAAT+AGG + chr2.1:6800680-6800699 None:intergenic 35.0%
GATATCAGAAAGGACTTGTA+TGG - chr2.1:6801049-6801068 MS.gene45493:intron 35.0%
GGACAAAAAGATGCATATGT+TGG - chr2.1:6800061-6800080 MS.gene45493:CDS 35.0%
GTGTGATGTTGATATCAGAA+AGG - chr2.1:6801039-6801058 MS.gene45493:intron 35.0%
TAATGGAACAGGAATGGTTA+AGG - chr2.1:6799618-6799637 MS.gene45493:CDS 35.0%
TGAATAGCAACATACATAGC+AGG + chr2.1:6800310-6800329 None:intergenic 35.0%
! AATATGTGCAGGTATTGTTC+TGG - chr2.1:6800625-6800644 MS.gene45493:intron 35.0%
! CATTTTCTGTGCACAATTGA+AGG + chr2.1:6801415-6801434 None:intergenic 35.0%
! TGCTATGTATGTTGCTATTC+AGG - chr2.1:6800309-6800328 MS.gene45493:CDS 35.0%
! TTCTCTTAGCACTTTTCAAC+AGG - chr2.1:6801228-6801247 MS.gene45493:intron 35.0%
! TTTTTCCTGAAGAAGCGATT+TGG - chr2.1:6799671-6799690 MS.gene45493:intron 35.0%
!!! ATTTTCTCACGATTAGCCTT+TGG + chr2.1:6800256-6800275 None:intergenic 35.0%
AACATTTAGGCTGGATTTGC+TGG - chr2.1:6799965-6799984 MS.gene45493:CDS 40.0%
ACATAGTAGTACCACCACTA+AGG + chr2.1:6801084-6801103 None:intergenic 40.0%
AGCATGGTATTGTGAGTAAC+TGG - chr2.1:6800134-6800153 MS.gene45493:CDS 40.0%
AGTGAAAGAATAACCACGCT+CGG + chr2.1:6800771-6800790 None:intergenic 40.0%
AGTGCTAAGAGAAGCTAAGA+TGG + chr2.1:6801221-6801240 None:intergenic 40.0%
ATCCTTCGTCTTGATTTAGC+AGG - chr2.1:6800710-6800729 MS.gene45493:CDS 40.0%
CAAGCTCTTGCTCAAAATCA+AGG + chr2.1:6800850-6800869 None:intergenic 40.0%
CACACGGAGTTCATTGTAAA+AGG + chr2.1:6800188-6800207 None:intergenic 40.0%
CACACTGTGCCTATTTATGA+AGG - chr2.1:6800668-6800687 MS.gene45493:CDS 40.0%
CTCACAATACCATGCTCAAT+TGG + chr2.1:6800130-6800149 None:intergenic 40.0%
CTTCATAAATAGGCACAGTG+TGG + chr2.1:6800670-6800689 None:intergenic 40.0%
GAAAAAGAACCTCAGGACAA+CGG + chr2.1:6800955-6800974 None:intergenic 40.0%
GCATGGTATTGTGAGTAACT+GGG - chr2.1:6800135-6800154 MS.gene45493:CDS 40.0%
GGAAATATTGTCCTTAGTGG+TGG - chr2.1:6801070-6801089 MS.gene45493:intron 40.0%
GGCATATGCATAAATACACG+CGG + chr2.1:6801279-6801298 None:intergenic 40.0%
GGGATGACATGGAGAAAATT+TGG - chr2.1:6800155-6800174 MS.gene45493:CDS 40.0%
TAGAGTCAATATACCACGCT+TGG + chr2.1:6800101-6800120 None:intergenic 40.0%
TCCTTCGTCTTGATTTAGCA+GGG - chr2.1:6800711-6800730 MS.gene45493:CDS 40.0%
! AAATACAGTGTCTGGATTGG+TGG - chr2.1:6801193-6801212 MS.gene45493:intron 40.0%
! AATGCAGATGTGGATTGCAA+AGG - chr2.1:6801369-6801388 MS.gene45493:intron 40.0%
! CAGACACTGTATTTTCTCTC+GGG + chr2.1:6801187-6801206 None:intergenic 40.0%
! CCAGACACTGTATTTTCTCT+CGG + chr2.1:6801188-6801207 None:intergenic 40.0%
! CTCGGTAAGGATTTTCATCA+AGG + chr2.1:6800753-6800772 None:intergenic 40.0%
! CTTTTACAATGAACTCCGTG+TGG - chr2.1:6800186-6800205 MS.gene45493:CDS 40.0%
! GTGATTTGCAACATTTAGGC+TGG - chr2.1:6799956-6799975 MS.gene45493:CDS 40.0%
! TCTTTTCTACGATCTGCGAT+TGG - chr2.1:6799868-6799887 MS.gene45493:CDS 40.0%
!! CTGTGATAATGGAACAGGAA+TGG - chr2.1:6799612-6799631 MS.gene45493:CDS 40.0%
!! TGCAAGGTTCAGTTTGCTAA+TGG - chr2.1:6800464-6800483 MS.gene45493:intron 40.0%
!! TTTTCATCAAGGCATCAGTG+AGG + chr2.1:6800742-6800761 None:intergenic 40.0%
AACAGCTTCCATTCCAACCA+TGG + chr2.1:6800984-6801003 None:intergenic 45.0%
AAGAATAACCACGCTCGGTA+AGG + chr2.1:6800766-6800785 None:intergenic 45.0%
AAGCAGCATGAAGATCAAGG+TGG - chr2.1:6801153-6801172 MS.gene45493:intron 45.0%
ACCTTGATCTTCATGCTGCT+TGG + chr2.1:6801154-6801173 None:intergenic 45.0%
ACGAAGGATAGCATGTGGAA+GGG + chr2.1:6800699-6800718 None:intergenic 45.0%
AGGACCAGATTCATCGTACT+CGG + chr2.1:6801395-6801414 None:intergenic 45.0%
ATAGTGATGATCTGGCCATC+AGG + chr2.1:6800917-6800936 None:intergenic 45.0%
ATGAAAATCCTTACCGAGCG+TGG - chr2.1:6800755-6800774 MS.gene45493:CDS 45.0%
ATGGTTGGAATGGAAGCTGT+TGG - chr2.1:6800983-6801002 MS.gene45493:CDS 45.0%
CAGCTCCAATAGTGATGATC+TGG + chr2.1:6800925-6800944 None:intergenic 45.0%
CATAGCCAAATCGCTTCTTC+AGG + chr2.1:6799679-6799698 None:intergenic 45.0%
CATTGCTGACAGAATGAGCA+AGG - chr2.1:6801111-6801130 MS.gene45493:intron 45.0%
CCGAGAGAAAATACAGTGTC+TGG - chr2.1:6801185-6801204 MS.gene45493:intron 45.0%
CGCGGACAATGTGAGTATAT+CGG + chr2.1:6801261-6801280 None:intergenic 45.0%
GAAGGCTGAAAAAGAACCTC+AGG + chr2.1:6800962-6800981 None:intergenic 45.0%
GACCAGTGGTTGAATATCCT+CGG + chr2.1:6799593-6799612 None:intergenic 45.0%
GATGGCCAGATCATCACTAT+TGG - chr2.1:6800917-6800936 MS.gene45493:CDS 45.0%
GCTGTGTTTCCTAGCATTGT+TGG - chr2.1:6800004-6800023 MS.gene45493:CDS 45.0%
GTTCCATTATCACAGACCAG+TGG + chr2.1:6799607-6799626 None:intergenic 45.0%
TACAATTTCACGCTCAGCTG+TGG + chr2.1:6800795-6800814 None:intergenic 45.0%
TCAAGACGAAGGATAGCATG+TGG + chr2.1:6800704-6800723 None:intergenic 45.0%
TCATTCTGTCAGCAATGCCA+GGG + chr2.1:6801108-6801127 None:intergenic 45.0%
TGTGAGTAACTGGGATGACA+TGG - chr2.1:6800144-6800163 MS.gene45493:CDS 45.0%
! ACACTGTATTTTCTCTCGGG+TGG + chr2.1:6801184-6801203 None:intergenic 45.0%
! ATTGTTCTGGACTCTGGAGA+TGG - chr2.1:6800638-6800657 MS.gene45493:intron 45.0%
! CAACCACTGGTCTGTGATAA+TGG - chr2.1:6799601-6799620 MS.gene45493:CDS 45.0%
! CCTTGATCTTCATGCTGCTT+GGG + chr2.1:6801153-6801172 None:intergenic 45.0%
! CTTGATCTTCATGCTGCTTG+GGG + chr2.1:6801152-6801171 None:intergenic 45.0%
!! CGATTAGCCTTTGGATTGAG+CGG + chr2.1:6800247-6800266 None:intergenic 45.0%
!! CTGGTCTGTGATAATGGAAC+AGG - chr2.1:6799607-6799626 MS.gene45493:CDS 45.0%
!!! CTTTTTCAGCCTTCCATGGT+TGG - chr2.1:6800968-6800987 MS.gene45493:CDS 45.0%
!!! GGTTCTTTTTCAGCCTTCCA+TGG - chr2.1:6800964-6800983 MS.gene45493:CDS 45.0%
AAGGCCGAGTACGATGAATC+TGG - chr2.1:6801388-6801407 MS.gene45493:CDS 50.0%
ACTGGTGTGATGGTTGGCAT+GGG - chr2.1:6800040-6800059 MS.gene45493:CDS 50.0%
ATGCTAGGAAACACAGCCCT+TGG + chr2.1:6800001-6800020 None:intergenic 50.0%
CCCAAGCAGCATGAAGATCA+AGG - chr2.1:6801150-6801169 MS.gene45493:intron 50.0%
CTCATTCTGTCAGCAATGCC+AGG + chr2.1:6801109-6801128 None:intergenic 50.0%
GACGAAGGATAGCATGTGGA+AGG + chr2.1:6800700-6800719 None:intergenic 50.0%
GAGCAAGGAAATTACCGCGT+TGG - chr2.1:6801126-6801145 MS.gene45493:intron 50.0%
GCCCTGCTAAATCAAGACGA+AGG + chr2.1:6800715-6800734 None:intergenic 50.0%
GCTTCCATTCCAACCATGGA+AGG + chr2.1:6800980-6800999 None:intergenic 50.0%
GGTGCTTCAGTGAGCAAAAC+CGG + chr2.1:6800226-6800245 None:intergenic 50.0%
GGTGGTACTACTATGTTCCC+TGG - chr2.1:6801088-6801107 MS.gene45493:intron 50.0%
GTGCTTCAGTGAGCAAAACC+GGG + chr2.1:6800225-6800244 None:intergenic 50.0%
GTTCTATCGCTCTATGCCAG+TGG - chr2.1:6800334-6800353 MS.gene45493:CDS 50.0%
TATGCCAGTGGTCGAACAAC+CGG - chr2.1:6800346-6800365 MS.gene45493:CDS 50.0%
TCAGCCTTCCATGGTTGGAA+TGG - chr2.1:6800973-6800992 MS.gene45493:CDS 50.0%
TGCTGGAGATGATGCTCCAA+GGG - chr2.1:6799982-6800001 MS.gene45493:CDS 50.0%
TTGCTGGAGATGATGCTCCA+AGG - chr2.1:6799981-6800000 MS.gene45493:CDS 50.0%
! GCAGGTATTGTTCTGGACTC+TGG - chr2.1:6800632-6800651 MS.gene45493:intron 50.0%
!! TGAAGCACCGCTCAATCCAA+AGG - chr2.1:6800237-6800256 MS.gene45493:CDS 50.0%
CACTGGTGTGATGGTTGGCA+TGG - chr2.1:6800039-6800058 MS.gene45493:CDS 55.0%
CGCCGAGGATATTCAACCAC+TGG - chr2.1:6799588-6799607 MS.gene45493:CDS 55.0%
CGTGGTCGACCAACAATGCT+AGG + chr2.1:6800016-6800035 None:intergenic 55.0%
CTAACCGGTTGTTCGACCAC+TGG + chr2.1:6800353-6800372 None:intergenic 55.0%
GATGAAGCTCAGTCCAAGCG+TGG - chr2.1:6800085-6800104 MS.gene45493:CDS 55.0%
TGAGCGTTTCCGTTGTCCTG+AGG - chr2.1:6800943-6800962 MS.gene45493:CDS 55.0%
TGCCAACCATCACACCAGTG+TGG + chr2.1:6800039-6800058 None:intergenic 55.0%
ACCACGCCACACTGGTGTGA+TGG - chr2.1:6800030-6800049 MS.gene45493:CDS 60.0%
ACCATCACACCAGTGTGGCG+TGG + chr2.1:6800034-6800053 None:intergenic 60.0%
AGCAAAACCGGGTGCTCCTC+TGG + chr2.1:6800214-6800233 None:intergenic 60.0%
CAAAACCGGGTGCTCCTCTG+GGG + chr2.1:6800212-6800231 None:intergenic 60.0%
CGCCACACTGGTGTGATGGT+TGG - chr2.1:6800034-6800053 MS.gene45493:CDS 60.0%
GCAAAACCGGGTGCTCCTCT+GGG + chr2.1:6800213-6800232 None:intergenic 60.0%
GTTGGTCGACCACGCCACAC+TGG - chr2.1:6800022-6800041 MS.gene45493:CDS 65.0%
TGAACTCCGTGTGGCCCCAG+AGG - chr2.1:6800195-6800214 MS.gene45493:CDS 65.0%
! CATGCTGCTTGGGGCCAACG+CGG + chr2.1:6801143-6801162 None:intergenic 65.0%
!! GGTGCTCCTCTGGGGCCACA+CGG + chr2.1:6800204-6800223 None:intergenic 70.0%
!! TGTGGCCCCAGAGGAGCACC+CGG - chr2.1:6800204-6800223 MS.gene45493:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6799580 6801441 6799580 ID=MS.gene45493
chr2.1 mRNA 6799580 6801441 6799580 ID=MS.gene45493.t1;Parent=MS.gene45493
chr2.1 exon 6801382 6801441 6801382 ID=MS.gene45493.t1.exon1;Parent=MS.gene45493.t1
chr2.1 CDS 6801382 6801441 6801382 ID=cds.MS.gene45493.t1;Parent=MS.gene45493.t1
chr2.1 exon 6800654 6801047 6800654 ID=MS.gene45493.t1.exon2;Parent=MS.gene45493.t1
chr2.1 CDS 6800654 6801047 6800654 ID=cds.MS.gene45493.t1;Parent=MS.gene45493.t1
chr2.1 exon 6799772 6800385 6799772 ID=MS.gene45493.t1.exon3;Parent=MS.gene45493.t1
chr2.1 CDS 6799772 6800385 6799772 ID=cds.MS.gene45493.t1;Parent=MS.gene45493.t1
chr2.1 exon 6799580 6799645 6799580 ID=MS.gene45493.t1.exon4;Parent=MS.gene45493.t1
chr2.1 CDS 6799580 6799645 6799580 ID=cds.MS.gene45493.t1;Parent=MS.gene45493.t1
Gene Sequence

>MS.gene45493

ATGGCAGACGCCGAGGATATTCAACCACTGGTCTGTGATAATGGAACAGGAATGGTTAAGGTAAAGCACAAATGTGATTCTAGTTTCACAATTTTTCCTGAAGAAGCGATTTGGCTATGTATCTTTTCTGTTTTCTCTTCGGTGTTGATAAATAATCGTTATAGCAATGTAGCGAAATTTGAACAAATCAATATTGTTTTGCGATACACTATCTAGTACTAAATGTTGTTGTTAAGGAGCTGCTGTAAGTCAATAGCACTATTGCATAGCAGAATTTGAATGAACTGTTCTTTTCTACGATCTGCGATTGGCAACATTGTTTTTGTTTGTTTGATAACGCTCCCTTTCTACTAATTTGCTGTGAAACTATTGCATTGTGATTTGCAACATTTAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGCATTGTTGGTCGACCACGCCACACTGGTGTGATGGTTGGCATGGGACAAAAAGATGCATATGTTGGTGATGAAGCTCAGTCCAAGCGTGGTATATTGACTCTAAAATATCCAATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCGGTTTTGCTCACTGAAGCACCGCTCAATCCAAAGGCTAATCGTGAGAAAATGACACAAATTATGTTTGAGACATTCAACACACCTGCTATGTATGTTGCTATTCAGGCTGTTCTATCGCTCTATGCCAGTGGTCGAACAACCGGTTAGTCATTTCTCGATTTAAGAAAACTAATGTCTCATGTCTAGTCTAGTTTATGTTCTACGTTTTTTATACTGGTCAGTAAAAATAAGCATGCATTGCAAGGTTCAGTTTGCTAATGGATATATGGAGCAGATATTGAATGTGAGTTATGAAGTCTAGTTAAAAAAAAAGGAAAATAGATAAAAATGGATTTCAAAAAATTTGGTCCTATATCTATGGCTATTTTATGATTAAATTCTGATTGAAAACTCTATATTAATATGTGCAGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCTATTTATGAAGGATATGCCCTTCCACATGCTATCCTTCGTCTTGATTTAGCAGGGCGTGACCTCACTGATGCCTTGATGAAAATCCTTACCGAGCGTGGTTATTCTTTCACTACCACAGCTGAGCGTGAAATTGTAAGAGATGTGAAGGAAAAGCTGTCTTATATTGCCCTTGATTTTGAGCAAGAGCTTGAAACTTCAAAAACAAGCTCTGCTGTTGAGAAGAGTTATGAACTTCCTGATGGCCAGATCATCACTATTGGAGCTGAGCGTTTCCGTTGTCCTGAGGTTCTTTTTCAGCCTTCCATGGTTGGAATGGAAGCTGTTGGCATTCACGAGACGACATACAACTCAATCATGAAGTGTGATGTTGATATCAGAAAGGACTTGTATGGAAATATTGTCCTTAGTGGTGGTACTACTATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATTACCGCGTTGGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAATACAGTGTCTGGATTGGTGGCTCCATCTTAGCTTCTCTTAGCACTTTTCAACAGGTGAGAAACCGATATACTCACATTGTCCGCGTGTATTTATGCATATGCCTTAGAATTCTTTTTTTGACATGTTTGATTTATTTGGGATACTAATGAATGATGAAACACTTATTTTTGAAAATGCAGATGTGGATTGCAAAGGCCGAGTACGATGAATCTGGTCCTTCAATTGTGCACAGAAAATGCTTTTAG
Protein sequence

>MS.gene45493.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQELETSKTSSAVEKSYELPDGQIITIGAERFRCPEVLFQPSMVGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF