Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000108.t1 | XP_013443410.1 | 99.7 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 1.40E-216 | 761.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000108.t1 | O81221 | 98.1 | 377 | 7 | 0 | 1 | 377 | 1 | 377 | 1.2e-216 | 753.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000108.t1 | B7FIH3 | 99.7 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 1.0e-216 | 761.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000108.t1 | MTR_0015s0130 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| MS.gene000108.t1 | MTR_2g096840 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 775 |
| MS.gene000108.t1 | MTR_7g093260 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 770 |
| MS.gene000108.t1 | MTR_6g004000 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| MS.gene000108.t1 | MTR_7g026230 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 766 |
| MS.gene000108.t1 | MTR_3g095530 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| MS.gene000108.t1 | MTR_2g008050 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| MS.gene000108.t1 | MTR_7g027185 | 43.272 | 379 | 201 | 3 | 10 | 374 | 7 | 385 | 7.16e-120 | 352 |
| MS.gene000108.t1 | MTR_7g027185 | 44.507 | 355 | 184 | 2 | 10 | 351 | 7 | 361 | 3.71e-117 | 345 |
| MS.gene000108.t1 | MTR_7g027185 | 47.557 | 307 | 159 | 1 | 10 | 314 | 7 | 313 | 1.75e-109 | 323 |
| MS.gene000108.t1 | MTR_5g066400 | 38.031 | 447 | 203 | 12 | 1 | 376 | 1 | 444 | 1.52e-93 | 287 |
| MS.gene000108.t1 | MTR_8g464900 | 37.269 | 432 | 198 | 11 | 1 | 362 | 1 | 429 | 8.47e-87 | 269 |
| MS.gene000108.t1 | MTR_5g066400 | 35.426 | 446 | 188 | 12 | 1 | 376 | 1 | 416 | 1.08e-80 | 253 |
| MS.gene000108.t1 | MTR_8g089630 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 1.17e-71 | 230 |
| MS.gene000108.t1 | MTR_5g066400 | 35.000 | 400 | 189 | 11 | 1 | 332 | 1 | 397 | 1.99e-69 | 224 |
| MS.gene000108.t1 | MTR_3g030550 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 4.62e-68 | 219 |
| MS.gene000108.t1 | MTR_2g445210 | 28.132 | 423 | 238 | 7 | 8 | 366 | 6 | 426 | 2.85e-55 | 188 |
| MS.gene000108.t1 | MTR_8g007440 | 34.470 | 264 | 146 | 6 | 77 | 319 | 9 | 266 | 2.91e-46 | 159 |
| MS.gene000108.t1 | MTR_2g445210 | 26.613 | 372 | 207 | 7 | 8 | 315 | 6 | 375 | 2.72e-41 | 149 |
| MS.gene000108.t1 | MTR_3g010170 | 30.640 | 297 | 182 | 9 | 91 | 371 | 179 | 467 | 5.10e-40 | 148 |
| MS.gene000108.t1 | MTR_8g070520 | 31.399 | 293 | 174 | 10 | 91 | 366 | 187 | 469 | 1.24e-35 | 136 |
| MS.gene000108.t1 | MTR_8g070520 | 30.935 | 278 | 166 | 9 | 91 | 352 | 187 | 454 | 2.23e-32 | 127 |
| MS.gene000108.t1 | MTR_3g067945 | 29.365 | 252 | 159 | 7 | 9 | 245 | 21 | 268 | 2.95e-22 | 99.0 |
| MS.gene000108.t1 | MTR_3g067945 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 2.13e-15 | 78.2 |
| MS.gene000108.t1 | MTR_8g008540 | 70.270 | 37 | 11 | 0 | 340 | 376 | 41 | 77 | 4.15e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000108.t1 | AT3G53750 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| MS.gene000108.t1 | AT3G53750 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| MS.gene000108.t1 | AT2G37620 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| MS.gene000108.t1 | AT2G37620 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| MS.gene000108.t1 | AT2G37620 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| MS.gene000108.t1 | AT2G37620 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| MS.gene000108.t1 | AT3G46520 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| MS.gene000108.t1 | AT3G46520 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| MS.gene000108.t1 | AT5G09810 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| MS.gene000108.t1 | AT3G12110 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| MS.gene000108.t1 | AT5G59370 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| MS.gene000108.t1 | AT5G59370 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| MS.gene000108.t1 | AT3G18780 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| MS.gene000108.t1 | AT3G18780 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| MS.gene000108.t1 | AT1G49240 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| MS.gene000108.t1 | AT3G18780 | 92.758 | 359 | 26 | 0 | 1 | 359 | 1 | 359 | 0.0 | 705 |
| MS.gene000108.t1 | AT2G42100 | 84.783 | 368 | 56 | 0 | 10 | 377 | 11 | 378 | 0.0 | 676 |
| MS.gene000108.t1 | AT2G42090 | 70.541 | 370 | 104 | 1 | 7 | 376 | 1 | 365 | 0.0 | 566 |
| MS.gene000108.t1 | AT2G42170 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| MS.gene000108.t1 | AT2G42170 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| MS.gene000108.t1 | AT2G42170 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| MS.gene000108.t1 | AT2G42170 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| MS.gene000108.t1 | AT2G42170 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 1.42e-131 | 376 |
| MS.gene000108.t1 | AT3G27000 | 44.327 | 379 | 197 | 4 | 10 | 374 | 7 | 385 | 3.43e-122 | 358 |
| MS.gene000108.t1 | AT1G18450 | 37.246 | 443 | 208 | 9 | 1 | 376 | 1 | 440 | 2.68e-95 | 291 |
| MS.gene000108.t1 | AT1G13180 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 8.14e-72 | 231 |
| MS.gene000108.t1 | AT3G60830 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.85e-67 | 217 |
| MS.gene000108.t1 | AT3G33520 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 4.18e-58 | 195 |
| MS.gene000108.t1 | AT5G56180 | 31.690 | 284 | 169 | 9 | 91 | 358 | 50 | 324 | 2.54e-35 | 132 |
| MS.gene000108.t1 | AT5G56180 | 31.690 | 284 | 169 | 9 | 91 | 358 | 182 | 456 | 1.54e-34 | 133 |
| MS.gene000108.t1 | AT3G12380 | 29.572 | 257 | 158 | 6 | 9 | 245 | 21 | 274 | 3.17e-25 | 107 |
| MS.gene000108.t1 | AT3G12380 | 33.793 | 145 | 92 | 2 | 228 | 368 | 572 | 716 | 2.65e-16 | 81.3 |
| MS.gene000108.t1 | AT3G12380 | 29.412 | 255 | 155 | 6 | 9 | 245 | 21 | 268 | 1.53e-24 | 105 |
| MS.gene000108.t1 | AT3G12380 | 33.793 | 145 | 92 | 2 | 228 | 368 | 566 | 710 | 2.64e-16 | 81.3 |
| MS.gene000108.t1 | AT1G73910 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.24e-23 | 95.1 |
| MS.gene000108.t1 | AT1G73910 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.24e-23 | 95.1 |
| MS.gene000108.t1 | AT5G56180 | 32.673 | 202 | 113 | 8 | 91 | 281 | 182 | 371 | 1.27e-19 | 89.7 |
| MS.gene000108.t1 | AT1G73910 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.91e-12 | 64.7 |
Find 106 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCTTGTTTGTGATAA+TGG | 0.154159 | 1.3:-38047200 | MS.gene000108:CDS |
| ATAGGTATTGTTCTTGATTC+TGG | 0.193204 | 1.3:-38045323 | MS.gene000108:intron |
| CTGGATTGGAGGCTCCATTT+TGG | 0.220933 | 1.3:-38044751 | MS.gene000108:CDS |
| AGCATGGAATTGTTAGTAAC+TGG | 0.268065 | 1.3:-38046401 | MS.gene000108:CDS |
| TGTTAGTAACTGGGATGATA+TGG | 0.302766 | 1.3:-38046391 | MS.gene000108:CDS |
| AGAAGAACAGGATGTTCTTC+AGG | 0.312396 | 1.3:+38046324 | None:intergenic |
| GTGATGAAGCTCAATCAAAA+AGG | 0.325898 | 1.3:-38046452 | MS.gene000108:CDS |
| GTTCACAGGAAATGCTTCTA+AGG | 0.326765 | 1.3:-38044224 | None:intergenic |
| ACCAAGTAGCATGAAAATTA+AGG | 0.346175 | 1.3:-38044805 | MS.gene000108:CDS |
| AACAGCCGAGCTCGTCTTTG+AGG | 0.347903 | 1.3:+38045082 | None:intergenic |
| CTAACAATTCCATGCTCAAT+TGG | 0.355777 | 1.3:+38046408 | None:intergenic |
| TAATTGCAGGCTGGATTTGC+CGG | 0.363107 | 1.3:-38046570 | MS.gene000108:intron |
| TCCACACGCAATCCTGCGTT+TGG | 0.371608 | 1.3:-38045255 | MS.gene000108:CDS |
| CGTGGACGACCTACAATACT+AGG | 0.377152 | 1.3:+38046522 | None:intergenic |
| GGTGCTGAGGGAAGCCAAAA+TGG | 0.378341 | 1.3:+38044737 | None:intergenic |
| CACTGGTGTGATGGTTGGTA+TGG | 0.381213 | 1.3:-38046496 | MS.gene000108:CDS |
| CTTGTTTGTGATAATGGAAC+TGG | 0.393561 | 1.3:-38047194 | MS.gene000108:CDS |
| GATATTAGAAAGGATCTCTA+TGG | 0.393879 | 1.3:-38044906 | MS.gene000108:CDS |
| AGCTATGTATGTTGCCATTC+AGG | 0.402911 | 1.3:-38046226 | MS.gene000108:CDS |
| ATCCTGCGTTTGGATCTTGC+AGG | 0.408141 | 1.3:-38045245 | MS.gene000108:CDS |
| GGTGCTTCAGTTAGAAGAAC+AGG | 0.415552 | 1.3:+38046312 | None:intergenic |
| AGGAAGTATAGTGTCTGGAT+TGG | 0.419464 | 1.3:-38044765 | MS.gene000108:CDS |
| GATGGCTGGAAGAGTACTTC+AGG | 0.422610 | 1.3:+38044996 | None:intergenic |
| TGTTCCCCGGCATTGCTGAT+AGG | 0.428746 | 1.3:-38044854 | MS.gene000108:CDS |
| CGCCCTTGGTGCATCATCTC+CGG | 0.435198 | 1.3:+38046551 | None:intergenic |
| TTCCCTCAGCACCTTCCAAC+AGG | 0.446388 | 1.3:-38044727 | MS.gene000108:intron |
| CTCTTCCAGCCATCCATGAT+TGG | 0.448268 | 1.3:-38044987 | MS.gene000108:CDS |
| ATACATAGCTGGAGCATTGA+AGG | 0.451630 | 1.3:+38046239 | None:intergenic |
| GTCTCTCACGATTTCGCGCT+CGG | 0.452168 | 1.3:+38045157 | None:intergenic |
| AAGTATAGTGTCTGGATTGG+AGG | 0.453134 | 1.3:-38044762 | MS.gene000108:CDS |
| AGGGCATATCCTTCATAGAT+AGG | 0.454246 | 1.3:+38045278 | None:intergenic |
| GATGGACAGGTGATCACAAT+AGG | 0.457168 | 1.3:-38045038 | MS.gene000108:CDS |
| AAGGCTGAATATGATGAATC+AGG | 0.458861 | 1.3:-38044257 | MS.gene000108:CDS |
| TATGCTAGTGGTCGTACAAC+CGG | 0.459900 | 1.3:-38046189 | MS.gene000108:intron |
| AAGCGAAAGCACGGCCTGAA+TGG | 0.462189 | 1.3:+38046212 | None:intergenic |
| ATTGTGATCACCTGTCCATC+AGG | 0.463240 | 1.3:+38045041 | None:intergenic |
| CTCATCCTATCAGCAATGCC+GGG | 0.468005 | 1.3:+38044849 | None:intergenic |
| CGATTAGCCTTAGGATTAAG+TGG | 0.477144 | 1.3:+38046291 | None:intergenic |
| CATTTCCTGTGAACAATTGA+AGG | 0.480733 | 1.3:+38044233 | None:intergenic |
| TAACAATTCCATGCTCAATT+GGG | 0.481241 | 1.3:+38046409 | None:intergenic |
| TTCATAATCAAGAGCAATGT+AGG | 0.483299 | 1.3:+38045118 | None:intergenic |
| ATTGTTCTTGATTCTGGAGA+TGG | 0.486571 | 1.3:-38045317 | MS.gene000108:CDS |
| GCGGTGTTCCCTAGTATTGT+AGG | 0.487449 | 1.3:-38046531 | MS.gene000108:CDS |
| CAGAGAGGAAGTATAGTGTC+TGG | 0.492085 | 1.3:-38044770 | MS.gene000108:CDS |
| AACGCAGGATTGCGTGTGGA+AGG | 0.498417 | 1.3:+38045258 | None:intergenic |
| CTATGAATTACCTGATGGAC+AGG | 0.498962 | 1.3:-38045051 | MS.gene000108:CDS |
| AGGAGCTTCCATACCAATCA+TGG | 0.501773 | 1.3:+38044974 | None:intergenic |
| GGGATGATATGGAAAAGATC+TGG | 0.506672 | 1.3:-38046380 | MS.gene000108:CDS |
| GCTCATCCTATCAGCAATGC+CGG | 0.518030 | 1.3:+38044848 | None:intergenic |
| GATTTCGCGCTCGGCTGTTG+TGG | 0.522921 | 1.3:+38045166 | None:intergenic |
| CAGACACTATACTTCCTCTC+TGG | 0.523127 | 1.3:+38044771 | None:intergenic |
| CACACAGTTCCTATCTATGA+AGG | 0.525553 | 1.3:-38045287 | MS.gene000108:CDS |
| GTGCTTTCGCTTTATGCTAG+TGG | 0.528191 | 1.3:-38046201 | MS.gene000108:CDS |
| CCATACCAATCATGGATGGC+TGG | 0.531059 | 1.3:+38044982 | None:intergenic |
| CCAGCCATCCATGATTGGTA+TGG | 0.540901 | 1.3:-38044982 | MS.gene000108:CDS |
| TTCAGGACAACGGAAACGTT+CGG | 0.541873 | 1.3:+38045013 | None:intergenic |
| CAGGCCCTTCAATTGTTCAC+AGG | 0.542188 | 1.3:-38044238 | MS.gene000108:CDS |
| ATGAAAATCTTAACCGAGCG+TGG | 0.549893 | 1.3:-38045200 | MS.gene000108:CDS |
| ATACCTGTTGGAAGGTGCTG+AGG | 0.550602 | 1.3:+38044724 | None:intergenic |
| GATGGTTGGTATGGGACAAA+AGG | 0.552916 | 1.3:-38046487 | MS.gene000108:CDS |
| TGAATGGCAACATACATAGC+TGG | 0.554069 | 1.3:+38046228 | None:intergenic |
| ATACTAGGGAACACCGCCCT+TGG | 0.561168 | 1.3:+38046537 | None:intergenic |
| TGAAGCACCACTTAATCCTA+AGG | 0.561763 | 1.3:-38046298 | MS.gene000108:CDS |
| TATGTTGTTTCATGTATACC+AGG | 0.569084 | 1.3:+38044954 | None:intergenic |
| CTAAAGTACCCAATTGAGCA+TGG | 0.570119 | 1.3:-38046417 | MS.gene000108:CDS |
| GTGTGATGTCGATATTAGAA+AGG | 0.572715 | 1.3:-38044916 | MS.gene000108:CDS |
| TCCACGCCACACTGGTGTGA+TGG | 0.574722 | 1.3:-38046505 | MS.gene000108:CDS |
| ATGATTGGTATGGAAGCTCC+TGG | 0.576789 | 1.3:-38044972 | MS.gene000108:CDS |
| AGAAACCTCAAAGACGAGCT+CGG | 0.577460 | 1.3:-38045087 | MS.gene000108:CDS |
| ACGCAGGATTGCGTGTGGAA+GGG | 0.581046 | 1.3:+38045259 | None:intergenic |
| AAGAGCTATGAATTACCTGA+TGG | 0.584592 | 1.3:-38045056 | MS.gene000108:CDS |
| CGCCACACTGGTGTGATGGT+TGG | 0.586183 | 1.3:-38046501 | MS.gene000108:CDS |
| GAGCAAGGAGATCACAGCAT+TGG | 0.587533 | 1.3:-38044829 | MS.gene000108:CDS |
| TACCTGTTGGAAGGTGCTGA+GGG | 0.587542 | 1.3:+38044725 | None:intergenic |
| ACCATCACACCAGTGTGGCG+TGG | 0.593745 | 1.3:+38046504 | None:intergenic |
| GTTCCATTATCACAAACAAG+AGG | 0.600317 | 1.3:+38047197 | None:intergenic |
| TGCCGGAGATGATGCACCAA+GGG | 0.600516 | 1.3:-38046553 | MS.gene000108:CDS |
| ACACTATACTTCCTCTCTGG+TGG | 0.604108 | 1.3:+38044774 | None:intergenic |
| ATTTCCTGTGAACAATTGAA+GGG | 0.604151 | 1.3:+38044234 | None:intergenic |
| TAATGGAACTGGAATGGTCA+AGG | 0.604703 | 1.3:-38047183 | MS.gene000108:intron |
| TATGGAAACATCGTATTGAG+TGG | 0.620418 | 1.3:-38044888 | MS.gene000108:CDS |
| GGTGGTACGACTATGTTCCC+CGG | 0.621683 | 1.3:-38044867 | MS.gene000108:CDS |
| GGACAAAAGGATGCATATGT+TGG | 0.623959 | 1.3:-38046474 | MS.gene000108:CDS |
| TTGTGATAATGGAACTGGAA+TGG | 0.628921 | 1.3:-38047189 | MS.gene000108:CDS |
| CGGAGATGATGCACCAAGGG+CGG | 0.631181 | 1.3:-38046550 | MS.gene000108:CDS |
| GCATGGAATTGTTAGTAACT+GGG | 0.633326 | 1.3:-38046400 | MS.gene000108:CDS |
| CGAAATCGTGAGAGACGTGA+AGG | 0.635127 | 1.3:-38045150 | MS.gene000108:CDS |
| CATGCACTATACCTGTTGGA+AGG | 0.635341 | 1.3:+38044716 | None:intergenic |
| ACTAGCATAAAGCGAAAGCA+CGG | 0.638011 | 1.3:+38046203 | None:intergenic |
| GCTTCCATACCAATCATGGA+TGG | 0.638459 | 1.3:+38044978 | None:intergenic |
| TCCAAACGCAGGATTGCGTG+TGG | 0.640726 | 1.3:+38045254 | None:intergenic |
| ACTGGTGTGATGGTTGGTAT+GGG | 0.640914 | 1.3:-38046495 | MS.gene000108:CDS |
| GGTGAAAGAGTATCCACGCT+CGG | 0.643494 | 1.3:+38045187 | None:intergenic |
| CATTGCTGATAGGATGAGCA+AGG | 0.644331 | 1.3:-38044844 | MS.gene000108:CDS |
| AAGTAGCATGAAAATTAAGG+TGG | 0.656638 | 1.3:-38044802 | MS.gene000108:CDS |
| GTGGACGACCTACAATACTA+GGG | 0.661189 | 1.3:+38046523 | None:intergenic |
| TTGCCGGAGATGATGCACCA+AGG | 0.662970 | 1.3:-38046554 | MS.gene000108:CDS |
| GGAAACATCGTATTGAGTGG+TGG | 0.669837 | 1.3:-38044885 | MS.gene000108:CDS |
| AATGCAGATGTGGATTGCAA+AGG | 0.677558 | 1.3:-38044276 | MS.gene000108:intron |
| TCATCCTATCAGCAATGCCG+GGG | 0.683199 | 1.3:+38044850 | None:intergenic |
| GTAGGTCGTCCACGCCACAC+TGG | 0.686011 | 1.3:-38046513 | MS.gene000108:CDS |
| GACCTGCAAGATCCAAACGC+AGG | 0.690015 | 1.3:+38045243 | None:intergenic |
| GGAAGAGTACTTCAGGACAA+CGG | 0.707065 | 1.3:+38045003 | None:intergenic |
| AGGTGGTTGCACCACCAGAG+AGG | 0.708305 | 1.3:-38044785 | MS.gene000108:CDS |
| CTTCATAGATAGGAACTGTG+TGG | 0.711555 | 1.3:+38045288 | None:intergenic |
| TACCAACCATCACACCAGTG+TGG | 0.726907 | 1.3:+38046499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTCGTAAATTATTAT+CGG | + | chr1.3:38045735-38045754 | None:intergenic | 10.0% |
| !!! | TTATTTTCCTTTCATTTTAA+AGG | + | chr1.3:38046783-38046802 | None:intergenic | 15.0% |
| !!! | TTTTATAATGTTTTAAATCG+TGG | + | chr1.3:38044545-38044564 | None:intergenic | 15.0% |
| !! | AAAAATTACCAAAAAATGGA+AGG | - | chr1.3:38045946-38045965 | MS.gene000108:intron | 20.0% |
| !! | AAAATTACAAAACCATTGTT+TGG | + | chr1.3:38045986-38046005 | None:intergenic | 20.0% |
| !! | AACTTTAAATATCCAAACAA+TGG | - | chr1.3:38045971-38045990 | MS.gene000108:intron | 20.0% |
| !! | ATGAAATTGAATGAAAAGTA+CGG | + | chr1.3:38045848-38045867 | None:intergenic | 20.0% |
| !! | TAATGAGTTAGATAGAAATA+TGG | - | chr1.3:38044591-38044610 | MS.gene000108:intron | 20.0% |
| !! | TCAAATGTTAGAAAATGAAA+TGG | + | chr1.3:38046012-38046031 | None:intergenic | 20.0% |
| !! | TCTGAAAAATTACCAAAAAA+TGG | - | chr1.3:38045942-38045961 | MS.gene000108:intron | 20.0% |
| !! | TCTTAAACCACATTAAAAAA+GGG | + | chr1.3:38047126-38047145 | None:intergenic | 20.0% |
| !!! | ATATGTTTGAAATGATAGAA+AGG | - | chr1.3:38045615-38045634 | MS.gene000108:intron | 20.0% |
| !!! | CATAGTTTATATCTTGTTAT+AGG | - | chr1.3:38046106-38046125 | MS.gene000108:intron | 20.0% |
| !!! | TTTTTGGTAATTTTTCAGAA+CGG | + | chr1.3:38045941-38045960 | None:intergenic | 20.0% |
| ! | AAATTCTAATGAAATACGAG+TGG | + | chr1.3:38045487-38045506 | None:intergenic | 25.0% |
| ! | AACCAAAATGTGTTAAATTG+TGG | + | chr1.3:38044807-38044826 | None:intergenic | 25.0% |
| ! | AATGTTTCATGAATGATTTG+AGG | - | chr1.3:38045592-38045611 | MS.gene000108:intron | 25.0% |
| ! | CAATTGTATAACACATATCA+AGG | + | chr1.3:38044724-38044743 | None:intergenic | 25.0% |
| ! | CTAATCAAATAAGATCAACA+AGG | + | chr1.3:38044305-38044324 | None:intergenic | 25.0% |
| ! | CTCTTAAACCACATTAAAAA+AGG | + | chr1.3:38047127-38047146 | None:intergenic | 25.0% |
| ! | GAAAGGAAAATAATGCATAA+AGG | - | chr1.3:38046790-38046809 | MS.gene000108:intron | 25.0% |
| ! | GATAAGTACTTATGCTATAA+GGG | - | chr1.3:38047062-38047081 | MS.gene000108:intron | 25.0% |
| ! | GTTTATATGAGCTTATCTAT+AGG | - | chr1.3:38046851-38046870 | MS.gene000108:intron | 25.0% |
| ! | TGTTTATACATAGCACATAT+AGG | - | chr1.3:38047040-38047059 | MS.gene000108:intron | 25.0% |
| !! | ATATCTGTACAATTCTGAAA+AGG | + | chr1.3:38045308-38045327 | None:intergenic | 25.0% |
| !! | CTTGTTGATCTTATTTGATT+AGG | - | chr1.3:38044303-38044322 | MS.gene000108:intron | 25.0% |
| !! | GATCTTATTTGATTAGGTAA+AGG | - | chr1.3:38044309-38044328 | MS.gene000108:intron | 25.0% |
| !! | GATGTGTTTTATATAATTGC+AGG | - | chr1.3:38044864-38044883 | MS.gene000108:CDS | 25.0% |
| !! | TACCACAATTTAACACATTT+TGG | - | chr1.3:38044802-38044821 | MS.gene000108:CDS | 25.0% |
| !! | TGTTTGAAAAATGAAGTACT+TGG | - | chr1.3:38045670-38045689 | MS.gene000108:intron | 25.0% |
| !! | TTTTTATCAACGTACTTGTT+TGG | + | chr1.3:38045410-38045429 | None:intergenic | 25.0% |
| !!! | AAAGTTTTCCTTCCATTTTT+TGG | + | chr1.3:38045957-38045976 | None:intergenic | 25.0% |
| !!! | CTTTTTTAATGTGGTTTAAG+AGG | - | chr1.3:38047125-38047144 | MS.gene000108:intron | 25.0% |
| !!! | TGAAATACCCTTTTTTAATG+TGG | - | chr1.3:38047116-38047135 | MS.gene000108:intron | 25.0% |
| !!! | TTAGAGACCTTTAAAATGAA+AGG | - | chr1.3:38046773-38046792 | MS.gene000108:intron | 25.0% |
| AAACATAGAGGAATCTTTAC+CGG | + | chr1.3:38045280-38045299 | None:intergenic | 30.0% | |
| AAGTAGCATGAAAATTAAGG+TGG | - | chr1.3:38046645-38046664 | MS.gene000108:intron | 30.0% | |
| ACCAAGTAGCATGAAAATTA+AGG | - | chr1.3:38046642-38046661 | MS.gene000108:intron | 30.0% | |
| AGTGAAACAGACCTATAATT+TGG | - | chr1.3:38045913-38045932 | MS.gene000108:intron | 30.0% | |
| ATTTCCTGTGAACAATTGAA+GGG | + | chr1.3:38047216-38047235 | None:intergenic | 30.0% | |
| GAAAAGGAAAACAAACATAG+AGG | + | chr1.3:38045292-38045311 | None:intergenic | 30.0% | |
| GATATTAGAAAGGATCTCTA+TGG | - | chr1.3:38046541-38046560 | MS.gene000108:CDS | 30.0% | |
| GGATAAGTACTTATGCTATA+AGG | - | chr1.3:38047061-38047080 | MS.gene000108:intron | 30.0% | |
| TAACAATTCCATGCTCAATT+GGG | + | chr1.3:38045041-38045060 | None:intergenic | 30.0% | |
| TCAAATAAGATCAACAAGGT+TGG | + | chr1.3:38044301-38044320 | None:intergenic | 30.0% | |
| TCTTGTAATCTAGTAGTACA+TGG | - | chr1.3:38044698-38044717 | MS.gene000108:intron | 30.0% | |
| TGATGAAGCTCAATCAAAAA+GGG | - | chr1.3:38044996-38045015 | MS.gene000108:CDS | 30.0% | |
| TGCAGGAATTAATAATGTCA+TGG | - | chr1.3:38045543-38045562 | MS.gene000108:intron | 30.0% | |
| TGGCTTATGATATAACATCA+TGG | - | chr1.3:38044611-38044630 | MS.gene000108:intron | 30.0% | |
| TTCATAATCAAGAGCAATGT+AGG | + | chr1.3:38046332-38046351 | None:intergenic | 30.0% | |
| ! | ACCTTAATTTTCATGCTACT+TGG | + | chr1.3:38046646-38046665 | None:intergenic | 30.0% |
| ! | ATAGGTATTGTTCTTGATTC+TGG | - | chr1.3:38046124-38046143 | MS.gene000108:intron | 30.0% |
| ! | ATATCGATTGTACAATTTGC+AGG | - | chr1.3:38045526-38045545 | MS.gene000108:intron | 30.0% |
| ! | TAATAGTCAACAAGCTTGTT+TGG | - | chr1.3:38046824-38046843 | MS.gene000108:intron | 30.0% |
| ! | TGTTTTATATAATTGCAGGC+TGG | - | chr1.3:38044868-38044887 | MS.gene000108:CDS | 30.0% |
| ! | TTTTGTAATCAAGCACTACT+TGG | - | chr1.3:38044837-38044856 | MS.gene000108:CDS | 30.0% |
| !! | AGGTAAAGGTTTTTCGAAAA+AGG | - | chr1.3:38044323-38044342 | MS.gene000108:intron | 30.0% |
| !! | TATGTTGTTTCATGTATACC+AGG | + | chr1.3:38046496-38046515 | None:intergenic | 30.0% |
| AAGAGCTATGAATTACCTGA+TGG | - | chr1.3:38046391-38046410 | MS.gene000108:CDS | 35.0% | |
| AAGGCTGAATATGATGAATC+AGG | - | chr1.3:38047190-38047209 | MS.gene000108:CDS | 35.0% | |
| AGCATGGAATTGTTAGTAAC+TGG | - | chr1.3:38045046-38045065 | MS.gene000108:CDS | 35.0% | |
| ATAAGATCAACAAGGTTGGA+TGG | + | chr1.3:38044297-38044316 | None:intergenic | 35.0% | |
| ATTTCAAGACCCTGAATCAT+TGG | - | chr1.3:38045343-38045362 | MS.gene000108:intron | 35.0% | |
| CATCTGCATTAGGAAAGAAA+AGG | + | chr1.3:38047161-38047180 | None:intergenic | 35.0% | |
| CATTTCCTGTGAACAATTGA+AGG | + | chr1.3:38047217-38047236 | None:intergenic | 35.0% | |
| CTAACAATTCCATGCTCAAT+TGG | + | chr1.3:38045042-38045061 | None:intergenic | 35.0% | |
| GATGAAGCTCAATCAAAAAG+GGG | - | chr1.3:38044997-38045016 | MS.gene000108:CDS | 35.0% | |
| GCATGGAATTGTTAGTAACT+GGG | - | chr1.3:38045047-38045066 | MS.gene000108:CDS | 35.0% | |
| GTGATGAAGCTCAATCAAAA+AGG | - | chr1.3:38044995-38045014 | MS.gene000108:CDS | 35.0% | |
| GTGTGATGTCGATATTAGAA+AGG | - | chr1.3:38046531-38046550 | MS.gene000108:CDS | 35.0% | |
| GTTCCATTATCACAAACAAG+AGG | + | chr1.3:38044253-38044272 | None:intergenic | 35.0% | |
| TATGGAAACATCGTATTGAG+TGG | - | chr1.3:38046559-38046578 | MS.gene000108:CDS | 35.0% | |
| TGTTAGTAACTGGGATGATA+TGG | - | chr1.3:38045056-38045075 | MS.gene000108:CDS | 35.0% | |
| TTTCAAGACCCTGAATCATT+GGG | - | chr1.3:38045344-38045363 | MS.gene000108:intron | 35.0% | |
| TTTCTTTCCTAATGCAGATG+TGG | - | chr1.3:38047161-38047180 | MS.gene000108:intron | 35.0% | |
| ! | AGTTTTCTTCCTGCAATATG+TGG | - | chr1.3:38045879-38045898 | MS.gene000108:intron | 35.0% |
| ! | ATTGTTCTTGATTCTGGAGA+TGG | - | chr1.3:38046130-38046149 | MS.gene000108:intron | 35.0% |
| ! | CAACCTCTTGTTTGTGATAA+TGG | - | chr1.3:38044247-38044266 | MS.gene000108:CDS | 35.0% |
| ! | CTCGGTTAAGATTTTCATGA+GGG | + | chr1.3:38046245-38046264 | None:intergenic | 35.0% |
| !! | CTTGTTTGTGATAATGGAAC+TGG | - | chr1.3:38044253-38044272 | MS.gene000108:CDS | 35.0% |
| !! | TTGTGATAATGGAACTGGAA+TGG | - | chr1.3:38044258-38044277 | MS.gene000108:CDS | 35.0% |
| !!! | ATTTTCTCACGATTAGCCTT+AGG | + | chr1.3:38045168-38045187 | None:intergenic | 35.0% |
| AAGTCATGCACTATACCTGT+TGG | + | chr1.3:38046738-38046757 | None:intergenic | 40.0% | |
| ACTAGCATAAAGCGAAAGCA+CGG | + | chr1.3:38045247-38045266 | None:intergenic | 40.0% | |
| AGAAGAACAGGATGTTCTTC+AGG | + | chr1.3:38045126-38045145 | None:intergenic | 40.0% | |
| AGCTATGTATGTTGCCATTC+AGG | - | chr1.3:38045221-38045240 | MS.gene000108:CDS | 40.0% | |
| AGGGCATATCCTTCATAGAT+AGG | + | chr1.3:38046172-38046191 | None:intergenic | 40.0% | |
| ATGAAAATCTTAACCGAGCG+TGG | - | chr1.3:38046247-38046266 | MS.gene000108:CDS | 40.0% | |
| CACACAGTTCCTATCTATGA+AGG | - | chr1.3:38046160-38046179 | MS.gene000108:intron | 40.0% | |
| CATCCATAACCACATATTGC+AGG | + | chr1.3:38045891-38045910 | None:intergenic | 40.0% | |
| CTGTGTGTCAATGTCATATG+TGG | + | chr1.3:38045709-38045728 | None:intergenic | 40.0% | |
| CTTCATAGATAGGAACTGTG+TGG | + | chr1.3:38046162-38046181 | None:intergenic | 40.0% | |
| CTTCCTGCAATATGTGGTTA+TGG | - | chr1.3:38045885-38045904 | MS.gene000108:intron | 40.0% | |
| GGAATGCAGTGAAGTGAAAT+AGG | - | chr1.3:38045636-38045655 | MS.gene000108:intron | 40.0% | |
| GGACAAAAGGATGCATATGT+TGG | - | chr1.3:38044973-38044992 | MS.gene000108:CDS | 40.0% | |
| GGGATGATATGGAAAAGATC+TGG | - | chr1.3:38045067-38045086 | MS.gene000108:CDS | 40.0% | |
| GGGTATTTCAAACACATGTC+TGG | + | chr1.3:38047106-38047125 | None:intergenic | 40.0% | |
| TAATGGAACTGGAATGGTCA+AGG | - | chr1.3:38044264-38044283 | MS.gene000108:CDS | 40.0% | |
| TAGACACTAACACATGTCAG+AGG | - | chr1.3:38045796-38045815 | MS.gene000108:intron | 40.0% | |
| TGAATGGCAACATACATAGC+TGG | + | chr1.3:38045222-38045241 | None:intergenic | 40.0% | |
| TTCAAGACCCTGAATCATTG+GGG | - | chr1.3:38045345-38045364 | MS.gene000108:intron | 40.0% | |
| TTGCAATCCACATCTGCATT+AGG | + | chr1.3:38047171-38047190 | None:intergenic | 40.0% | |
| ! | AAGTATAGTGTCTGGATTGG+AGG | - | chr1.3:38046685-38046704 | MS.gene000108:intron | 40.0% |
| ! | AATGCAGATGTGGATTGCAA+AGG | - | chr1.3:38047171-38047190 | MS.gene000108:intron | 40.0% |
| ! | AGGAAGTATAGTGTCTGGAT+TGG | - | chr1.3:38046682-38046701 | MS.gene000108:intron | 40.0% |
| ! | CTAAAGTACCCAATTGAGCA+TGG | - | chr1.3:38045030-38045049 | MS.gene000108:CDS | 40.0% |
| ! | CTATGAATTACCTGATGGAC+AGG | - | chr1.3:38046396-38046415 | MS.gene000108:CDS | 40.0% |
| ! | GCTCGGTTAAGATTTTCATG+AGG | + | chr1.3:38046246-38046265 | None:intergenic | 40.0% |
| ! | TCAGAACGGTGCCAAATTAT+AGG | + | chr1.3:38045927-38045946 | None:intergenic | 40.0% |
| ! | TGAAGCACCACTTAATCCTA+AGG | - | chr1.3:38045149-38045168 | MS.gene000108:CDS | 40.0% |
| !! | ATACATAGCTGGAGCATTGA+AGG | + | chr1.3:38045211-38045230 | None:intergenic | 40.0% |
| !! | CGATTAGCCTTAGGATTAAG+TGG | + | chr1.3:38045159-38045178 | None:intergenic | 40.0% |
| ACACTATACTTCCTCTCTGG+TGG | + | chr1.3:38046676-38046695 | None:intergenic | 45.0% | |
| AGAAACCTCAAAGACGAGCT+CGG | - | chr1.3:38046360-38046379 | MS.gene000108:CDS | 45.0% | |
| AGGAGCTTCCATACCAATCA+TGG | + | chr1.3:38046476-38046495 | None:intergenic | 45.0% | |
| AGTCCAACCCCAATGATTCA+GGG | + | chr1.3:38045355-38045374 | None:intergenic | 45.0% | |
| ATACTATGATGTCGCTGTCG+CGG | + | chr1.3:38044402-38044421 | None:intergenic | 45.0% | |
| ATCACAAGTGACCGCAATTC+TGG | - | chr1.3:38044440-38044459 | MS.gene000108:intron | 45.0% | |
| ATGATTGGTATGGAAGCTCC+TGG | - | chr1.3:38046475-38046494 | MS.gene000108:CDS | 45.0% | |
| ATTGTGATCACCTGTCCATC+AGG | + | chr1.3:38046409-38046428 | None:intergenic | 45.0% | |
| CAGACACTATACTTCCTCTC+TGG | + | chr1.3:38046679-38046698 | None:intergenic | 45.0% | |
| CATGCACTATACCTGTTGGA+AGG | + | chr1.3:38046734-38046753 | None:intergenic | 45.0% | |
| CATTGCTGATAGGATGAGCA+AGG | - | chr1.3:38046603-38046622 | MS.gene000108:intron | 45.0% | |
| GAACTGGAATGGTCAAGGTA+TGG | - | chr1.3:38044269-38044288 | MS.gene000108:CDS | 45.0% | |
| GATGGACAGGTGATCACAAT+AGG | - | chr1.3:38046409-38046428 | MS.gene000108:CDS | 45.0% | |
| GCTTCCATACCAATCATGGA+TGG | + | chr1.3:38046472-38046491 | None:intergenic | 45.0% | |
| GGAAACATCGTATTGAGTGG+TGG | - | chr1.3:38046562-38046581 | MS.gene000108:CDS | 45.0% | |
| GGTGCTTCAGTTAGAAGAAC+AGG | + | chr1.3:38045138-38045157 | None:intergenic | 45.0% | |
| GTGCTTTCGCTTTATGCTAG+TGG | - | chr1.3:38045246-38045265 | MS.gene000108:CDS | 45.0% | |
| GTGGACGACCTACAATACTA+GGG | + | chr1.3:38044927-38044946 | None:intergenic | 45.0% | |
| TAATTGCAGGCTGGATTTGC+CGG | - | chr1.3:38044877-38044896 | MS.gene000108:CDS | 45.0% | |
| TAGTCCAACCCCAATGATTC+AGG | + | chr1.3:38045356-38045375 | None:intergenic | 45.0% | |
| TATGCTAGTGGTCGTACAAC+CGG | - | chr1.3:38045258-38045277 | MS.gene000108:CDS | 45.0% | |
| TTCAGGACAACGGAAACGTT+CGG | + | chr1.3:38046437-38046456 | None:intergenic | 45.0% | |
| TTCATGTAGCTAACCCCACT+TGG | - | chr1.3:38044644-38044663 | MS.gene000108:intron | 45.0% | |
| ! | ACTGGTGTGATGGTTGGTAT+GGG | - | chr1.3:38044952-38044971 | MS.gene000108:CDS | 45.0% |
| ! | CAGAGAGGAAGTATAGTGTC+TGG | - | chr1.3:38046677-38046696 | MS.gene000108:intron | 45.0% |
| ! | GATGGTTGGTATGGGACAAA+AGG | - | chr1.3:38044960-38044979 | MS.gene000108:CDS | 45.0% |
| !! | GGAAGAGTACTTCAGGACAA+CGG | + | chr1.3:38046447-38046466 | None:intergenic | 45.0% |
| AATTGCGATCCTTGCGAGTC+TGG | - | chr1.3:38044760-38044779 | MS.gene000108:CDS | 50.0% | |
| AGACCCTGAATCATTGGGGT+TGG | - | chr1.3:38045349-38045368 | MS.gene000108:intron | 50.0% | |
| AGCTGATGCAGCCAGAATTG+CGG | + | chr1.3:38044454-38044473 | None:intergenic | 50.0% | |
| ATCCTGCGTTTGGATCTTGC+AGG | - | chr1.3:38046202-38046221 | MS.gene000108:CDS | 50.0% | |
| ATGTAGCTAACCCCACTTGG+TGG | - | chr1.3:38044647-38044666 | MS.gene000108:intron | 50.0% | |
| ATTGCGATCCTTGCGAGTCT+GGG | - | chr1.3:38044761-38044780 | MS.gene000108:CDS | 50.0% | |
| CAGGCCCTTCAATTGTTCAC+AGG | - | chr1.3:38047209-38047228 | MS.gene000108:CDS | 50.0% | |
| CCAGCCATCCATGATTGGTA+TGG | - | chr1.3:38046465-38046484 | MS.gene000108:CDS | 50.0% | |
| CCATACCAATCATGGATGGC+TGG | + | chr1.3:38046468-38046487 | None:intergenic | 50.0% | |
| CGAAATCGTGAGAGACGTGA+AGG | - | chr1.3:38046297-38046316 | MS.gene000108:CDS | 50.0% | |
| CGTGGACGACCTACAATACT+AGG | + | chr1.3:38044928-38044947 | None:intergenic | 50.0% | |
| CTCATCCTATCAGCAATGCC+GGG | + | chr1.3:38046601-38046620 | None:intergenic | 50.0% | |
| CTCTTCCAGCCATCCATGAT+TGG | - | chr1.3:38046460-38046479 | MS.gene000108:CDS | 50.0% | |
| GAGCAAGGAGATCACAGCAT+TGG | - | chr1.3:38046618-38046637 | MS.gene000108:intron | 50.0% | |
| GAGTCTGGGGAATTGGAACA+CGG | - | chr1.3:38044775-38044794 | MS.gene000108:CDS | 50.0% | |
| GCGGTGTTCCCTAGTATTGT+AGG | - | chr1.3:38044916-38044935 | MS.gene000108:CDS | 50.0% | |
| GCTCATCCTATCAGCAATGC+CGG | + | chr1.3:38046602-38046621 | None:intergenic | 50.0% | |
| GTACGGACACATCAGATCGA+TGG | + | chr1.3:38045831-38045850 | None:intergenic | 50.0% | |
| TACCAACCATCACACCAGTG+TGG | + | chr1.3:38044951-38044970 | None:intergenic | 50.0% | |
| TCATCCTATCAGCAATGCCG+GGG | + | chr1.3:38046600-38046619 | None:intergenic | 50.0% | |
| TGTAGCTAACCCCACTTGGT+GGG | - | chr1.3:38044648-38044667 | MS.gene000108:intron | 50.0% | |
| ! | AAGCCTTATCCCACCAAGTG+GGG | + | chr1.3:38044660-38044679 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACCAAGT+GGG | + | chr1.3:38044661-38044680 | None:intergenic | 50.0% |
| ! | CACTGGTGTGATGGTTGGTA+TGG | - | chr1.3:38044951-38044970 | MS.gene000108:CDS | 50.0% |
| ! | TAACCCCACTTGGTGGGATA+AGG | - | chr1.3:38044654-38044673 | MS.gene000108:intron | 50.0% |
| ! | TCAAGCCTTATCCCACCAAG+TGG | + | chr1.3:38044662-38044681 | None:intergenic | 50.0% |
| !! | ATACCTGTTGGAAGGTGCTG+AGG | + | chr1.3:38046726-38046745 | None:intergenic | 50.0% |
| !! | CTGGATTGGAGGCTCCATTT+TGG | - | chr1.3:38046696-38046715 | MS.gene000108:intron | 50.0% |
| !! | GATGGCTGGAAGAGTACTTC+AGG | + | chr1.3:38046454-38046473 | None:intergenic | 50.0% |
| !! | GGTGAAAGAGTATCCACGCT+CGG | + | chr1.3:38046263-38046282 | None:intergenic | 50.0% |
| !! | TACCTGTTGGAAGGTGCTGA+GGG | + | chr1.3:38046725-38046744 | None:intergenic | 50.0% |
| AACAGCCGAGCTCGTCTTTG+AGG | + | chr1.3:38046368-38046387 | None:intergenic | 55.0% | |
| AACGCAGGATTGCGTGTGGA+AGG | + | chr1.3:38046192-38046211 | None:intergenic | 55.0% | |
| ACGCAGGATTGCGTGTGGAA+GGG | + | chr1.3:38046191-38046210 | None:intergenic | 55.0% | |
| ATACTAGGGAACACCGCCCT+TGG | + | chr1.3:38044913-38044932 | None:intergenic | 55.0% | |
| GACCTGCAAGATCCAAACGC+AGG | + | chr1.3:38046207-38046226 | None:intergenic | 55.0% | |
| GCTGCATTTGACTGCGAGTC+TGG | - | chr1.3:38044471-38044490 | MS.gene000108:intron | 55.0% | |
| GGTGGTACGACTATGTTCCC+CGG | - | chr1.3:38046580-38046599 | MS.gene000108:intron | 55.0% | |
| GTCTCTCACGATTTCGCGCT+CGG | + | chr1.3:38046293-38046312 | None:intergenic | 55.0% | |
| TCCAAACGCAGGATTGCGTG+TGG | + | chr1.3:38046196-38046215 | None:intergenic | 55.0% | |
| TCCAATTCCCCAGACTCGCA+AGG | + | chr1.3:38044772-38044791 | None:intergenic | 55.0% | |
| TCCACACGCAATCCTGCGTT+TGG | - | chr1.3:38046192-38046211 | MS.gene000108:CDS | 55.0% | |
| TCCTTGCGAGTCTGGGGAAT+TGG | - | chr1.3:38044768-38044787 | MS.gene000108:CDS | 55.0% | |
| TGCCGGAGATGATGCACCAA+GGG | - | chr1.3:38044894-38044913 | MS.gene000108:CDS | 55.0% | |
| TGTTCCCCGGCATTGCTGAT+AGG | - | chr1.3:38046593-38046612 | MS.gene000108:intron | 55.0% | |
| TTCCCTCAGCACCTTCCAAC+AGG | - | chr1.3:38046720-38046739 | MS.gene000108:intron | 55.0% | |
| TTGCCGGAGATGATGCACCA+AGG | - | chr1.3:38044893-38044912 | MS.gene000108:CDS | 55.0% | |
| TTGCGATCCTTGCGAGTCTG+GGG | - | chr1.3:38044762-38044781 | MS.gene000108:CDS | 55.0% | |
| ! | AAGCGAAAGCACGGCCTGAA+TGG | + | chr1.3:38045238-38045257 | None:intergenic | 55.0% |
| ! | GGTGCTGAGGGAAGCCAAAA+TGG | + | chr1.3:38046713-38046732 | None:intergenic | 55.0% |
| ACCATCACACCAGTGTGGCG+TGG | + | chr1.3:38044946-38044965 | None:intergenic | 60.0% | |
| AGGTGGTTGCACCACCAGAG+AGG | - | chr1.3:38046662-38046681 | MS.gene000108:intron | 60.0% | |
| CCAGACTCGCAGTCATGTCG+CGG | + | chr1.3:38044501-38044520 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | - | chr1.3:38044946-38044965 | MS.gene000108:CDS | 60.0% | |
| CGGAGATGATGCACCAAGGG+CGG | - | chr1.3:38044897-38044916 | MS.gene000108:CDS | 60.0% | |
| GATTTCGCGCTCGGCTGTTG+TGG | + | chr1.3:38046284-38046303 | None:intergenic | 60.0% | |
| TCCACGCCACACTGGTGTGA+TGG | - | chr1.3:38044942-38044961 | MS.gene000108:CDS | 60.0% | |
| TCGTGGCAGCAGTCATGTCG+CGG | + | chr1.3:38044528-38044547 | None:intergenic | 60.0% | |
| ! | CGCCCTTGGTGCATCATCTC+CGG | + | chr1.3:38044899-38044918 | None:intergenic | 60.0% |
| CCGCGACATGACTGCGAGTC+TGG | - | chr1.3:38044498-38044517 | MS.gene000108:intron | 65.0% | |
| GTAGGTCGTCCACGCCACAC+TGG | - | chr1.3:38044934-38044953 | MS.gene000108:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 38044226 | 38047243 | 38044226 | ID=MS.gene000108 |
| chr1.3 | mRNA | 38044226 | 38047243 | 38044226 | ID=MS.gene000108.t1;Parent=MS.gene000108 |
| chr1.3 | exon | 38047184 | 38047243 | 38047184 | ID=MS.gene000108.t1.exon1;Parent=MS.gene000108.t1 |
| chr1.3 | CDS | 38047184 | 38047243 | 38047184 | ID=cds.MS.gene000108.t1;Parent=MS.gene000108.t1 |
| chr1.3 | exon | 38046190 | 38046583 | 38046190 | ID=MS.gene000108.t1.exon2;Parent=MS.gene000108.t1 |
| chr1.3 | CDS | 38046190 | 38046583 | 38046190 | ID=cds.MS.gene000108.t1;Parent=MS.gene000108.t1 |
| chr1.3 | exon | 38044728 | 38045341 | 38044728 | ID=MS.gene000108.t1.exon3;Parent=MS.gene000108.t1 |
| chr1.3 | CDS | 38044728 | 38045341 | 38044728 | ID=cds.MS.gene000108.t1;Parent=MS.gene000108.t1 |
| chr1.3 | exon | 38044226 | 38044291 | 38044226 | ID=MS.gene000108.t1.exon4;Parent=MS.gene000108.t1 |
| chr1.3 | CDS | 38044226 | 38044291 | 38044226 | ID=cds.MS.gene000108.t1;Parent=MS.gene000108.t1 |
| Gene Sequence |
| Protein sequence |
