AlfalfaGEDB | MS.gene053110

M. sativa cultivar XinJiangDaYe / MS.gene053110

KEGG: K10355
GO: -
PFAM: PF00022.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053110.t1	XP_013450689.1	100	377	0	0	1	377	1	377	3.60E-217	763.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053110.t1	A2XLF2	96.8	377	12	0	1	377	1	377	1.7e-215	749.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053110.t1	A0A072U4T5	100.0	377	0	0	1	377	1	377	2.6e-217	763.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053110	MS.gene056910	0.800629	1.32E-48	-1.69E-46
MS.gene053110	MS.gene82765	0.969518	3.06E-130	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene049321	MS.gene053110	PPI
MS.gene77958	MS.gene053110	PPI
MS.gene055437	MS.gene053110	PPI
MS.gene018887	MS.gene053110	PPI
MS.gene39046	MS.gene053110	PPI
MS.gene053110	MS.gene86676	PPI
MS.gene79962	MS.gene053110	PPI
MS.gene014110	MS.gene053110	PPI
MS.gene055991	MS.gene053110	PPI
MS.gene063165	MS.gene053110	PPI
MS.gene013348	MS.gene053110	PPI
MS.gene033590	MS.gene053110	PPI
MS.gene31154	MS.gene053110	PPI
MS.gene044849	MS.gene053110	PPI
MS.gene053110	MS.gene37274	PPI
MS.gene06446	MS.gene053110	PPI
MS.gene44405	MS.gene053110	PPI
MS.gene053110	MS.gene04628	PPI
MS.gene000108	MS.gene053110	PPI
MS.gene053110	MS.gene024155	PPI
MS.gene017881	MS.gene053110	PPI
MS.gene052120	MS.gene053110	PPI
MS.gene45493	MS.gene053110	PPI
MS.gene37081	MS.gene053110	PPI
MS.gene30959	MS.gene053110	PPI
MS.gene065414	MS.gene053110	PPI
MS.gene014281	MS.gene053110	PPI
MS.gene045007	MS.gene053110	PPI
MS.gene45491	MS.gene053110	PPI
MS.gene001874	MS.gene053110	PPI
MS.gene46685	MS.gene053110	PPI
MS.gene82765	MS.gene053110	PPI
MS.gene55068	MS.gene053110	PPI
MS.gene92731	MS.gene053110	PPI
MS.gene032698	MS.gene053110	PPI
MS.gene022650	MS.gene053110	PPI
MS.gene68222	MS.gene053110	PPI
MS.gene034501	MS.gene053110	PPI
MS.gene053110	MS.gene52664	PPI
MS.gene017992	MS.gene053110	PPI
MS.gene053110	MS.gene000108	PPI
MS.gene024155	MS.gene053110	PPI
MS.gene89726	MS.gene053110	PPI
MS.gene86783	MS.gene053110	PPI
MS.gene42528	MS.gene053110	PPI
MS.gene053110	MS.gene037838	PPI
MS.gene31004	MS.gene053110	PPI
MS.gene064894	MS.gene053110	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053110.t1	MTR_6g004000	100.000	377	0	0	1	377	1	377	0.0	784
MS.gene053110.t1	MTR_0015s0130	97.613	377	9	0	1	377	1	377	0.0	771
MS.gene053110.t1	MTR_7g026230	97.082	377	11	0	1	377	1	377	0.0	769
MS.gene053110.t1	MTR_2g096840	97.082	377	11	0	1	377	1	377	0.0	768
MS.gene053110.t1	MTR_7g093260	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	MTR_3g095530	95.491	377	17	0	1	377	1	377	0.0	761
MS.gene053110.t1	MTR_2g008050	93.899	377	23	0	1	377	1	377	0.0	754
MS.gene053110.t1	MTR_7g027185	42.744	379	203	3	10	374	7	385	3.61e-120	353
MS.gene053110.t1	MTR_7g027185	43.944	355	186	2	10	351	7	361	2.68e-117	345
MS.gene053110.t1	MTR_7g027185	46.906	307	161	1	10	314	7	313	1.07e-109	324
MS.gene053110.t1	MTR_5g066400	37.584	447	205	12	1	376	1	444	3.83e-92	283
MS.gene053110.t1	MTR_8g464900	36.806	432	200	11	1	362	1	429	1.28e-85	266
MS.gene053110.t1	MTR_5g066400	34.978	446	190	12	1	376	1	416	2.49e-79	249
MS.gene053110.t1	MTR_8g089630	34.063	411	221	8	10	372	10	418	6.58e-72	231
MS.gene053110.t1	MTR_5g066400	34.500	400	191	11	1	332	1	397	2.72e-68	221
MS.gene053110.t1	MTR_3g030550	37.500	376	209	9	11	377	5	363	2.79e-68	219
MS.gene053110.t1	MTR_2g445210	27.896	423	239	7	8	366	6	426	2.48e-56	191
MS.gene053110.t1	MTR_8g007440	34.470	264	146	7	77	319	9	266	2.02e-45	157
MS.gene053110.t1	MTR_2g445210	26.344	372	208	7	8	315	6	375	2.64e-42	152
MS.gene053110.t1	MTR_3g010170	29.966	297	184	9	91	371	179	467	8.27e-41	150
MS.gene053110.t1	MTR_8g070520	30.717	293	176	10	91	366	187	469	2.06e-36	138
MS.gene053110.t1	MTR_8g070520	30.216	278	168	9	91	352	187	454	4.51e-33	129
MS.gene053110.t1	MTR_3g067945	29.762	252	158	7	9	245	21	268	1.38e-23	102
MS.gene053110.t1	MTR_3g067945	31.967	122	80	2	250	368	586	707	3.79e-15	77.4
MS.gene053110.t1	MTR_8g008540	70.270	37	11	0	340	376	41	77	4.15e-13	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053110.t1	AT3G12110	96.817	377	12	0	1	377	1	377	0.0	767
MS.gene053110.t1	AT3G53750	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	AT3G53750	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	AT2G37620	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	AT2G37620	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	AT2G37620	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	AT2G37620	96.021	377	15	0	1	377	1	377	0.0	763
MS.gene053110.t1	AT3G46520	95.756	377	16	0	1	377	1	377	0.0	759
MS.gene053110.t1	AT3G46520	95.756	377	16	0	1	377	1	377	0.0	759
MS.gene053110.t1	AT5G59370	95.491	377	17	0	1	377	1	377	0.0	758
MS.gene053110.t1	AT5G59370	95.491	377	17	0	1	377	1	377	0.0	758
MS.gene053110.t1	AT5G09810	94.695	377	20	0	1	377	1	377	0.0	756
MS.gene053110.t1	AT1G49240	92.308	377	29	0	1	377	1	377	0.0	746
MS.gene053110.t1	AT3G18780	92.042	377	30	0	1	377	1	377	0.0	744
MS.gene053110.t1	AT3G18780	92.042	377	30	0	1	377	1	377	0.0	744
MS.gene053110.t1	AT3G18780	91.922	359	29	0	1	359	1	359	0.0	705
MS.gene053110.t1	AT2G42100	84.511	368	57	0	10	377	11	378	0.0	678
MS.gene053110.t1	AT2G42090	70.270	370	105	1	7	376	1	365	0.0	568
MS.gene053110.t1	AT2G42170	77.711	332	71	1	46	377	1	329	0.0	560
MS.gene053110.t1	AT2G42170	77.711	332	71	1	46	377	1	329	0.0	560
MS.gene053110.t1	AT2G42170	77.564	312	67	1	46	357	1	309	0.0	523
MS.gene053110.t1	AT2G42170	77.564	312	67	1	46	357	1	309	0.0	523
MS.gene053110.t1	AT2G42170	77.876	226	47	1	152	377	9	231	4.17e-132	377
MS.gene053110.t1	AT3G27000	43.008	379	202	3	10	374	7	385	2.36e-121	356
MS.gene053110.t1	AT1G18450	37.020	443	209	9	1	376	1	440	3.29e-94	289
MS.gene053110.t1	AT1G13180	33.656	413	222	9	10	373	9	418	3.65e-72	231
MS.gene053110.t1	AT3G60830	37.995	379	211	9	7	377	1	363	3.51e-68	219
MS.gene053110.t1	AT3G33520	30.166	421	236	7	10	377	5	420	1.55e-59	198
MS.gene053110.t1	AT5G56180	30.986	284	171	9	91	358	50	324	3.93e-36	134
MS.gene053110.t1	AT5G56180	30.986	284	171	9	91	358	182	456	2.79e-35	135
MS.gene053110.t1	AT3G12380	30.620	258	154	8	9	245	21	274	1.71e-26	111
MS.gene053110.t1	AT3G12380	32.414	145	94	2	228	368	572	716	4.24e-16	80.5
MS.gene053110.t1	AT3G12380	30.469	256	151	8	9	245	21	268	8.90e-26	109
MS.gene053110.t1	AT3G12380	32.414	145	94	2	228	368	566	710	4.00e-16	80.5
MS.gene053110.t1	AT1G73910	35.862	145	74	3	1	129	1	142	1.98e-23	95.5
MS.gene053110.t1	AT1G73910	35.862	145	74	3	1	129	1	142	1.98e-23	95.5
MS.gene053110.t1	AT5G56180	31.683	202	115	8	91	281	182	371	5.14e-20	90.9
MS.gene053110.t1	AT1G73910	29.268	123	71	2	1	107	1	123	3.00e-12	64.7

Find 118 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATGGTAACATTGTCCTTTC+AGG	0.196967	6.2:-36111	MS.gene053110:CDS
TGAAAGTCTCAAACATGATT+TGG	0.228707	6.2:+36952	None:intergenic
GCAGGTATTGTGTTGGATTC+TGG	0.230442	6.2:-36546	MS.gene053110:intron
CGCCATCCTTCGTCTTGATT+TGG	0.250680	6.2:-36472	MS.gene053110:CDS
TGCTATGTATGTGGCCATTC+AGG	0.263866	6.2:-36922	MS.gene053110:CDS
AAGAGAACTGGATGCTCTTC+GGG	0.272839	6.2:+37020	None:intergenic
CACCTTGATCTTCATGCTAC+TGG	0.286712	6.2:+36026	None:intergenic
GTCAACATCACATTTCATTA+TGG	0.291645	6.2:+36149	None:intergenic
CTGGATTGGTGGTTCTATCT+TGG	0.314091	6.2:-35974	MS.gene053110:CDS
AGCATGGTATTGTTAGCAAT+TGG	0.332769	6.2:-37097	MS.gene053110:CDS
CTAACAATACCATGCTCAAT+TGG	0.337000	6.2:+37104	None:intergenic
ATCTTCTCACGATTGGCCTT+TGG	0.345852	6.2:+36978	None:intergenic
CTCCACTGCAGAGCTGGTCT+TGG	0.349066	6.2:+36302	None:intergenic
CGATTGGCCTTTGGATTAAG+AGG	0.360842	6.2:+36987	None:intergenic
AAACCTGTTGGAAGGTGCTT+AGG	0.362509	6.2:+35947	None:intergenic
GAAAGTCTCAAACATGATTT+GGG	0.367813	6.2:+36953	None:intergenic
GGGATGACATGGAAAAGATT+TGG	0.369928	6.2:-37076	MS.gene053110:CDS
TACTGGTGTTATGGTTGGTA+TGG	0.379253	6.2:-37192	MS.gene053110:CDS
CACTTCCTATGCACAATTGA+TGG	0.381676	6.2:+35782	None:intergenic
GGAGGTACAACCATGTTTCC+TGG	0.389369	6.2:-36090	MS.gene053110:CDS
TCCTCGTCATACTGGTGTTA+TGG	0.389893	6.2:-37201	MS.gene053110:CDS
GGAGCTTCTGTTAAGAGAAC+TGG	0.393950	6.2:+37008	None:intergenic
GTTGGTCGTCCTCGTCATAC+TGG	0.402593	6.2:-37209	MS.gene053110:CDS
AGGGCATAACCCTCGTAGAT+AGG	0.410475	6.2:+36501	None:intergenic
GCCGTGTTTCCCAGCATTGT+TGG	0.417879	6.2:-37227	MS.gene053110:CDS
TAAGAGAACTGGATGCTCTT+CGG	0.421656	6.2:+37019	None:intergenic
GATGGGCAAGTCATCACTAT+TGG	0.422821	6.2:-36261	MS.gene053110:CDS
ATCCCTAAGCACCTTCCAAC+AGG	0.423722	6.2:-35950	MS.gene053110:intron
TTGGGTCATCTTCTCACGAT+TGG	0.425034	6.2:+36971	None:intergenic
CTTGTTTGTGACAATGGAAC+GGG	0.425360	6.2:-37412	MS.gene053110:CDS
ATCCTTCGTCTTGATTTGGC+TGG	0.433881	6.2:-36468	MS.gene053110:CDS
GCTCTTCTCCACTGCAGAGC+TGG	0.449641	6.2:+36296	None:intergenic
CAACCTCTTGTTTGTGACAA+TGG	0.449997	6.2:-37418	MS.gene053110:CDS
ATAGTGATGACTTGCCCATC+AGG	0.457656	6.2:+36264	None:intergenic
CCAACCATCCATGGTGGGAA+TGG	0.470099	6.2:-36205	MS.gene053110:CDS
CTGAGAGAAAGTACAGTGTC+TGG	0.474213	6.2:-35993	MS.gene053110:CDS
AACCTGTTGGAAGGTGCTTA+GGG	0.475906	6.2:+35948	None:intergenic
ACCTTGATCTTCATGCTACT+GGG	0.478858	6.2:+36027	None:intergenic
ACGAGGACGACCAACAATGC+TGG	0.486180	6.2:+37217	None:intergenic
GCTTCCATTCCCACCATGGA+TGG	0.492783	6.2:+36201	None:intergenic
TTTCATTATGGAGTTGTAAG+TGG	0.494092	6.2:+36161	None:intergenic
GACACGAAGCTCATTATAGA+AGG	0.496324	6.2:+37046	None:intergenic
TACGCCAGTGGTCGTACAAC+CGG	0.497426	6.2:-36885	MS.gene053110:intron
TAACAATACCATGCTCAATT+GGG	0.501628	6.2:+37105	None:intergenic
GATGGTTGGTATAAGACCTC+TGG	0.505376	6.2:+36219	None:intergenic
CACAATTTCACGCTCTGCTG+AGG	0.506159	6.2:+36386	None:intergenic
AAGTACAGTGTCTGGATTGG+TGG	0.508102	6.2:-35985	MS.gene053110:CDS
CCATTCCCACCATGGATGGT+TGG	0.508876	6.2:+36205	None:intergenic
AAGGCTGAGTATGATGAGTC+TGG	0.508996	6.2:-35806	MS.gene053110:CDS
TGAATGGCCACATACATAGC+AGG	0.510407	6.2:+36924	None:intergenic
TGCAGCTTCCATTCCCACCA+TGG	0.512897	6.2:+36197	None:intergenic
CAGACACTGTACTTTCTCTC+AGG	0.515639	6.2:+35994	None:intergenic
GCATGGTATTGTTAGCAATT+GGG	0.518576	6.2:-37096	MS.gene053110:CDS
GAGTGAAAGAACAGCCTGAA+TGG	0.531083	6.2:+36908	None:intergenic
GACGAAGGATGGCGTGTGGG+AGG	0.532816	6.2:+36481	None:intergenic
ATTGTGTTGGATTCTGGTGA+TGG	0.535950	6.2:-36540	MS.gene053110:CDS
AAAGGACAATGTTACCATAC+AGG	0.536912	6.2:+36115	None:intergenic
CTAGCTCTTGCTCATAGTCA+AGG	0.538467	6.2:+36331	None:intergenic
ACGAAGGATGGCGTGTGGGA+GGG	0.539544	6.2:+36482	None:intergenic
GGGCATAACCCTCGTAGATA+GGG	0.542873	6.2:+36502	None:intergenic
ATCAGCAATGCCAGGAAACA+TGG	0.545439	6.2:+36080	None:intergenic
CGTCATACTGGTGTTATGGT+TGG	0.545699	6.2:-37197	MS.gene053110:CDS
CTCATTCTATCAGCAATGCC+AGG	0.546672	6.2:+36072	None:intergenic
TGTTAGCAATTGGGATGACA+TGG	0.552376	6.2:-37087	MS.gene053110:CDS
CAATGCCCCTGCTATGTATG+TGG	0.552795	6.2:-36931	MS.gene053110:CDS
AGCCAAATCAAGACGAAGGA+TGG	0.553843	6.2:+36470	None:intergenic
ACCAACAATGCTGGGAAACA+CGG	0.555422	6.2:+37226	None:intergenic
TGAAATGTGATGTTGACATC+AGG	0.556293	6.2:-36143	MS.gene053110:CDS
GAGGGACATGAAGGAAAAGC+TGG	0.556301	6.2:-36364	MS.gene053110:CDS
AGAGCTATGAGTTGCCTGAT+GGG	0.561878	6.2:-36278	MS.gene053110:CDS
AAGAGCTATGAGTTGCCTGA+TGG	0.561934	6.2:-36279	MS.gene053110:CDS
CGAGGACGACCAACAATGCT+GGG	0.562344	6.2:+37218	None:intergenic
ACCCAGTAGCATGAAGATCA+AGG	0.570670	6.2:-36028	MS.gene053110:CDS
ACTGGTGTTATGGTTGGTAT+GGG	0.571151	6.2:-37191	MS.gene053110:CDS
AATTTCACGCTCTGCTGAGG+TGG	0.572067	6.2:+36389	None:intergenic
TCTTGTTTGTGACAATGGAA+CGG	0.582019	6.2:-37413	MS.gene053110:CDS
ATCCAAGACCAGCTCTGCAG+TGG	0.582930	6.2:-36304	MS.gene053110:CDS
GACATCAGGAAAGACCTGTA+TGG	0.586044	6.2:-36129	MS.gene053110:CDS
TGAAATTGTGAGGGACATGA+AGG	0.588484	6.2:-36373	MS.gene053110:CDS
TTGTGACAATGGAACGGGAA+TGG	0.597725	6.2:-37407	MS.gene053110:CDS
GGTCTTATACCAACCATCCA+TGG	0.598084	6.2:-36214	MS.gene053110:CDS
CTGGACCATCAATTGTGCAT+AGG	0.599358	6.2:-35787	MS.gene053110:CDS
CAATGGAACGGGAATGGTCA+AGG	0.601070	6.2:-37401	MS.gene053110:intron
CTCAAGTACCCAATTGAGCA+TGG	0.601570	6.2:-37113	MS.gene053110:CDS
ACATGGTTGTACCTCCTGAA+AGG	0.602998	6.2:+36097	None:intergenic
CAGCAGAGCGTGAAATTGTG+AGG	0.603654	6.2:-36383	MS.gene053110:CDS
ATTACCGGTTGTACGACCAC+TGG	0.605389	6.2:+36881	None:intergenic
AGAAGCTCCTCTTAATCCAA+AGG	0.605929	6.2:-36994	MS.gene053110:CDS
AGAAAGTACAGTGTCTGGAT+TGG	0.609058	6.2:-35988	MS.gene053110:CDS
ATGGTGGGAATGGAAGCTGC+AGG	0.613135	6.2:-36195	MS.gene053110:CDS
CAATTGGGTACTTGAGAGTG+AGG	0.613648	6.2:+37120	None:intergenic
CAAGACGAAGGATGGCGTGT+GGG	0.616699	6.2:+36478	None:intergenic
GTTCTTTCACTCTACGCCAG+TGG	0.617736	6.2:-36897	MS.gene053110:CDS
GTTCCATTGTCACAAACAAG+AGG	0.618990	6.2:+37415	None:intergenic
TAGCTCTTGCTCATAGTCAA+GGG	0.620110	6.2:+36332	None:intergenic
ATGAAAATTCTGACAGAACG+TGG	0.621840	6.2:-36423	MS.gene053110:CDS
AGCAGAGCGTGAAATTGTGA+GGG	0.623597	6.2:-36382	MS.gene053110:CDS
GAATGGCCACATACATAGCA+GGG	0.623873	6.2:+36925	None:intergenic
CATTGCTGATAGAATGAGCA+AGG	0.630326	6.2:-36067	MS.gene053110:CDS
GGTAACATTGTCCTTTCAGG+AGG	0.632428	6.2:-36108	MS.gene053110:CDS
ATGCTGGGAAACACGGCACG+CGG	0.638206	6.2:+37233	None:intergenic
TCAAGACGAAGGATGGCGTG+TGG	0.645593	6.2:+36477	None:intergenic
TGTGCAGATGTGGATTGCAA+AGG	0.646194	6.2:-35825	MS.gene053110:intron
GAAGAAGATGGCAGACGCTG+AGG	0.651588	6.2:-37446	None:intergenic
TTATACCAACCATCCATGGT+GGG	0.653612	6.2:-36210	MS.gene053110:CDS
AGATGCATATGTTGGTGATG+AGG	0.661651	6.2:-37162	MS.gene053110:CDS
CTTATACCAACCATCCATGG+TGG	0.662201	6.2:-36211	MS.gene053110:CDS
ACACTGTACTTTCTCTCAGG+CGG	0.665359	6.2:+35997	None:intergenic
GAGAACTGGATGCTCTTCGG+GGG	0.665855	6.2:+37022	None:intergenic
CCTCGTAGATAGGGACTGTG+TGG	0.679150	6.2:+36511	None:intergenic
CCACACAGTCCCTATCTACG+AGG	0.680054	6.2:-36511	MS.gene053110:CDS
AGAGAACTGGATGCTCTTCG+GGG	0.684661	6.2:+37021	None:intergenic
GACCAGCCAAATCAAGACGA+AGG	0.685950	6.2:+36466	None:intergenic
AATGGCCACATACATAGCAG+GGG	0.701226	6.2:+36926	None:intergenic
CACACAGTCCCTATCTACGA+GGG	0.710128	6.2:-36510	MS.gene053110:CDS
ACCATAACACCAGTATGACG+AGG	0.715543	6.2:+37200	None:intergenic
GATGAGGCACAATCTAAACG+TGG	0.755455	6.2:-37146	MS.gene053110:CDS
CAGTAGCATGAAGATCAAGG+TGG	0.775622	6.2:-36025	MS.gene053110:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATTTTTCTTATTTTTGC+AGG	-	chr6.2:36650-36669	MS.gene053110:intron	15.0%
!!	AAATAAAAAAACAAACCTGT+TGG	+	chr6.2:37282-37301	None:intergenic	20.0%
!!	ATCATAATTGAAAACAAAAC+CGG	+	chr6.2:36628-36647	None:intergenic	20.0%
!!	TAATATCATGAAATGATTAC+CGG	+	chr6.2:36351-36370	None:intergenic	20.0%
!!!	TGTGATTTATAATTTTTCTC+CGG	-	chr6.2:36606-36625	MS.gene053110:intron	20.0%
!	AAAATGTGATCTATAATAGC+TGG	+	chr6.2:35841-35860	None:intergenic	25.0%
!	AATTCGACTTAGAGAATATA+AGG	+	chr6.2:36583-36602	None:intergenic	25.0%
!	GACACATTATAGATTAACAT+TGG	-	chr6.2:35917-35936	MS.gene053110:intron	25.0%
!	GATATTATTATCCTATGCTT+GGG	-	chr6.2:36364-36383	MS.gene053110:CDS	25.0%
!	TGATATTATTATCCTATGCT+TGG	-	chr6.2:36363-36382	MS.gene053110:CDS	25.0%
!!!	ATTGGAATATACCATTTTTC+AGG	-	chr6.2:35935-35954	MS.gene053110:intron	25.0%
	AAAAAAACAAACCTGTTGGA+AGG	+	chr6.2:37278-37297	None:intergenic	30.0%
	GAAAGTCTCAAACATGATTT+GGG	+	chr6.2:36264-36283	None:intergenic	30.0%
	GAATAGTTATTTATGCCTCT+TGG	+	chr6.2:36561-36580	None:intergenic	30.0%
	GTCAACATCACATTTCATTA+TGG	+	chr6.2:37068-37087	None:intergenic	30.0%
	TAACAATACCATGCTCAATT+GGG	+	chr6.2:36112-36131	None:intergenic	30.0%
	TGAAAGTCTCAAACATGATT+TGG	+	chr6.2:36265-36284	None:intergenic	30.0%
	TTTCATTATGGAGTTGTAAG+TGG	+	chr6.2:37056-37075	None:intergenic	30.0%
!	ATCTGTTCGTGTAAAAGTAT+AGG	+	chr6.2:36491-36510	None:intergenic	30.0%
!	TTTTCATCATGTAATCAGTC+AGG	+	chr6.2:36778-36797	None:intergenic	30.0%
!!	TATTTTTGCAGGTATTGTGT+TGG	-	chr6.2:36661-36680	MS.gene053110:intron	30.0%
	AAAGGACAATGTTACCATAC+AGG	+	chr6.2:37102-37121	None:intergenic	35.0%
	AGATTGAGACTGACAATATG+AGG	-	chr6.2:36435-36454	MS.gene053110:CDS	35.0%
	AGCATGGTATTGTTAGCAAT+TGG	-	chr6.2:36117-36136	MS.gene053110:CDS	35.0%
	ATATGAAGCTATTCACCACA+AGG	+	chr6.2:35897-35916	None:intergenic	35.0%
	ATCCTATGCTTGGGTTTAAT+TGG	-	chr6.2:36373-36392	MS.gene053110:CDS	35.0%
	ATGAAAATTCTGACAGAACG+TGG	-	chr6.2:36791-36810	MS.gene053110:intron	35.0%
	CTAACAATACCATGCTCAAT+TGG	+	chr6.2:36113-36132	None:intergenic	35.0%
	GCATGGTATTGTTAGCAATT+GGG	-	chr6.2:36118-36137	MS.gene053110:CDS	35.0%
	TATGGTAACATTGTCCTTTC+AGG	-	chr6.2:37103-37122	MS.gene053110:CDS	35.0%
	TGAAATGTGATGTTGACATC+AGG	-	chr6.2:37071-37090	MS.gene053110:CDS	35.0%
!	CAATTTTCTCATCAACCAAG+AGG	-	chr6.2:36543-36562	MS.gene053110:CDS	35.0%
!	CACCAACATATGCATCTTTT+TGG	+	chr6.2:36049-36068	None:intergenic	35.0%
!	TCTTGTTTGTGACAATGGAA+CGG	-	chr6.2:35801-35820	MS.gene053110:CDS	35.0%
!!!	ATTTTTTGTTCTCTGCCTTG+TGG	-	chr6.2:35879-35898	MS.gene053110:intron	35.0%
!!!	GAATATACCATTTTTCAGGC+AGG	-	chr6.2:35939-35958	MS.gene053110:intron	35.0%
	AACTTGTACTTTGTGTGAGC+TGG	-	chr6.2:36459-36478	MS.gene053110:CDS	40.0%
	ACCTTGATCTTCATGCTACT+GGG	+	chr6.2:37190-37209	None:intergenic	40.0%
	AGAAGCTCCTCTTAATCCAA+AGG	-	chr6.2:36220-36239	MS.gene053110:CDS	40.0%
	ATTGTGTTGGATTCTGGTGA+TGG	-	chr6.2:36674-36693	MS.gene053110:intron	40.0%
	CACTTCCTATGCACAATTGA+TGG	+	chr6.2:37435-37454	None:intergenic	40.0%
	CATTGCTGATAGAATGAGCA+AGG	-	chr6.2:37147-37166	MS.gene053110:CDS	40.0%
	CTTGTTTGTGACAATGGAAC+GGG	-	chr6.2:35802-35821	MS.gene053110:CDS	40.0%
	GACACGAAGCTCATTATAGA+AGG	+	chr6.2:36171-36190	None:intergenic	40.0%
	GGCCAAAAAGATGCATATGT+TGG	-	chr6.2:36044-36063	MS.gene053110:CDS	40.0%
	GGGATGACATGGAAAAGATT+TGG	-	chr6.2:36138-36157	MS.gene053110:CDS	40.0%
	GTCTCAATCTAAAAGCTCCA+TGG	+	chr6.2:36425-36444	None:intergenic	40.0%
	GTTCCATTGTCACAAACAAG+AGG	+	chr6.2:35802-35821	None:intergenic	40.0%
	TAAGAGAACTGGATGCTCTT+CGG	+	chr6.2:36198-36217	None:intergenic	40.0%
	TAGCTCTTGCTCATAGTCAA+GGG	+	chr6.2:36885-36904	None:intergenic	40.0%
	TGAAATTGTGAGGGACATGA+AGG	-	chr6.2:36841-36860	MS.gene053110:intron	40.0%
	TGCCAATTAAACCCAAGCAT+AGG	+	chr6.2:36378-36397	None:intergenic	40.0%
	TGTTAGCAATTGGGATGACA+TGG	-	chr6.2:36127-36146	MS.gene053110:CDS	40.0%
	TTATACCAACCATCCATGGT+GGG	-	chr6.2:37004-37023	MS.gene053110:CDS	40.0%
!	ACCATAAGCTAGCTTATCCA+TGG	-	chr6.2:36405-36424	MS.gene053110:CDS	40.0%
!	AGAAAGTACAGTGTCTGGAT+TGG	-	chr6.2:37226-37245	MS.gene053110:CDS	40.0%
!	CAACCTCTTGTTTGTGACAA+TGG	-	chr6.2:35796-35815	MS.gene053110:CDS	40.0%
!	TCCATGGATAAGCTAGCTTA+TGG	+	chr6.2:36409-36428	None:intergenic	40.0%
!!	ACTGGTGTTATGGTTGGTAT+GGG	-	chr6.2:36023-36042	MS.gene053110:CDS	40.0%
!!	AGATGCATATGTTGGTGATG+AGG	-	chr6.2:36052-36071	MS.gene053110:CDS	40.0%
!!	TACTGGTGTTATGGTTGGTA+TGG	-	chr6.2:36022-36041	MS.gene053110:CDS	40.0%
	AAGAGAACTGGATGCTCTTC+GGG	+	chr6.2:36197-36216	None:intergenic	45.0%
	AAGAGCTATGAGTTGCCTGA+TGG	-	chr6.2:36935-36954	MS.gene053110:CDS	45.0%
	AAGGCTGAGTATGATGAGTC+TGG	-	chr6.2:37408-37427	MS.gene053110:CDS	45.0%
	AATGGCCACATACATAGCAG+GGG	+	chr6.2:36291-36310	None:intergenic	45.0%
	ACACTGTACTTTCTCTCAGG+CGG	+	chr6.2:37220-37239	None:intergenic	45.0%
	ACATGGTTGTACCTCCTGAA+AGG	+	chr6.2:37120-37139	None:intergenic	45.0%
	ACCAACAATGCTGGGAAACA+CGG	+	chr6.2:35991-36010	None:intergenic	45.0%
	ACCATAACACCAGTATGACG+AGG	+	chr6.2:36017-36036	None:intergenic	45.0%
	ACCCAGTAGCATGAAGATCA+AGG	-	chr6.2:37186-37205	MS.gene053110:CDS	45.0%
	AGAGCTATGAGTTGCCTGAT+GGG	-	chr6.2:36936-36955	MS.gene053110:CDS	45.0%
	AGCAAAGCCTGCCTGAAAAA+TGG	+	chr6.2:35949-35968	None:intergenic	45.0%
	AGCAGAGCGTGAAATTGTGA+GGG	-	chr6.2:36832-36851	MS.gene053110:intron	45.0%
	AGCCAAATCAAGACGAAGGA+TGG	+	chr6.2:36747-36766	None:intergenic	45.0%
	ATCAGCAATGCCAGGAAACA+TGG	+	chr6.2:37137-37156	None:intergenic	45.0%
	CAATCCACATCTGCACACAA+AGG	+	chr6.2:37386-37405	None:intergenic	45.0%
	CAATTGGGTACTTGAGAGTG+AGG	+	chr6.2:36097-36116	None:intergenic	45.0%
	CACATCTGCACACAAAGGAA+AGG	+	chr6.2:37381-37400	None:intergenic	45.0%
	CACCTTGATCTTCATGCTAC+TGG	+	chr6.2:37191-37210	None:intergenic	45.0%
	CAGACACTGTACTTTCTCTC+AGG	+	chr6.2:37223-37242	None:intergenic	45.0%
	CAGTAGCATGAAGATCAAGG+TGG	-	chr6.2:37189-37208	MS.gene053110:CDS	45.0%
	CTCAAGTACCCAATTGAGCA+TGG	-	chr6.2:36101-36120	MS.gene053110:CDS	45.0%
	CTCATTCTATCAGCAATGCC+AGG	+	chr6.2:37145-37164	None:intergenic	45.0%
	CTGGACCATCAATTGTGCAT+AGG	-	chr6.2:37427-37446	MS.gene053110:CDS	45.0%
	CTTATACCAACCATCCATGG+TGG	-	chr6.2:37003-37022	MS.gene053110:CDS	45.0%
	CTTTCCTTTGTGTGCAGATG+TGG	-	chr6.2:37379-37398	MS.gene053110:intron	45.0%
	GAATGGCCACATACATAGCA+GGG	+	chr6.2:36292-36311	None:intergenic	45.0%
	GACATCAGGAAAGACCTGTA+TGG	-	chr6.2:37085-37104	MS.gene053110:CDS	45.0%
	GAGTGAAAGAACAGCCTGAA+TGG	+	chr6.2:36309-36328	None:intergenic	45.0%
	GATGAGGCACAATCTAAACG+TGG	-	chr6.2:36068-36087	MS.gene053110:CDS	45.0%
	GATGGGCAAGTCATCACTAT+TGG	-	chr6.2:36953-36972	MS.gene053110:CDS	45.0%
	GGAGCTTCTGTTAAGAGAAC+TGG	+	chr6.2:36209-36228	None:intergenic	45.0%
	GGTAACATTGTCCTTTCAGG+AGG	-	chr6.2:37106-37125	MS.gene053110:CDS	45.0%
	TGAATGGCCACATACATAGC+AGG	+	chr6.2:36293-36312	None:intergenic	45.0%
	TGCTATGTATGTGGCCATTC+AGG	-	chr6.2:36292-36311	MS.gene053110:CDS	45.0%
	TTGGGTCATCTTCTCACGAT+TGG	+	chr6.2:36246-36265	None:intergenic	45.0%
	TTGTGACAATGGAACGGGAA+TGG	-	chr6.2:35807-35826	MS.gene053110:CDS	45.0%
!	AAGTACAGTGTCTGGATTGG+TGG	-	chr6.2:37229-37248	MS.gene053110:CDS	45.0%
!	ATAGTGATGACTTGCCCATC+AGG	+	chr6.2:36953-36972	None:intergenic	45.0%
!	CTAGCTCTTGCTCATAGTCA+AGG	+	chr6.2:36886-36905	None:intergenic	45.0%
!	CTGAGAGAAAGTACAGTGTC+TGG	-	chr6.2:37221-37240	MS.gene053110:CDS	45.0%
!	GATGGTTGGTATAAGACCTC+TGG	+	chr6.2:36998-37017	None:intergenic	45.0%
!	GCAGGTATTGTGTTGGATTC+TGG	-	chr6.2:36668-36687	MS.gene053110:intron	45.0%
!	GGTCTTATACCAACCATCCA+TGG	-	chr6.2:37000-37019	MS.gene053110:CDS	45.0%
!	TCCTCGTCATACTGGTGTTA+TGG	-	chr6.2:36013-36032	MS.gene053110:CDS	45.0%
!	TGTGCAGATGTGGATTGCAA+AGG	-	chr6.2:37389-37408	MS.gene053110:intron	45.0%
!!	AAACCTGTTGGAAGGTGCTT+AGG	+	chr6.2:37270-37289	None:intergenic	45.0%
!!	AACCTGTTGGAAGGTGCTTA+GGG	+	chr6.2:37269-37288	None:intergenic	45.0%
!!	ATCCTTCGTCTTGATTTGGC+TGG	-	chr6.2:36746-36765	MS.gene053110:intron	45.0%
!!	ATCTTCTCACGATTGGCCTT+TGG	+	chr6.2:36239-36258	None:intergenic	45.0%
!!	CGATTGGCCTTTGGATTAAG+AGG	+	chr6.2:36230-36249	None:intergenic	45.0%
!!	CGTCATACTGGTGTTATGGT+TGG	-	chr6.2:36017-36036	MS.gene053110:CDS	45.0%
!!	CTGGATTGGTGGTTCTATCT+TGG	-	chr6.2:37240-37259	MS.gene053110:CDS	45.0%
!!!	ATTTTTCAGGCAGGCTTTGC+TGG	-	chr6.2:35948-35967	MS.gene053110:intron	45.0%
	AATTTCACGCTCTGCTGAGG+TGG	+	chr6.2:36828-36847	None:intergenic	50.0%
	AGAGAACTGGATGCTCTTCG+GGG	+	chr6.2:36196-36215	None:intergenic	50.0%
	AGGGCATAACCCTCGTAGAT+AGG	+	chr6.2:36716-36735	None:intergenic	50.0%
	ATCCCTAAGCACCTTCCAAC+AGG	-	chr6.2:37264-37283	MS.gene053110:intron	50.0%
	CAATGCCCCTGCTATGTATG+TGG	-	chr6.2:36283-36302	MS.gene053110:CDS	50.0%
	CAATGGAACGGGAATGGTCA+AGG	-	chr6.2:35813-35832	MS.gene053110:CDS	50.0%
	CACAATTTCACGCTCTGCTG+AGG	+	chr6.2:36831-36850	None:intergenic	50.0%
	CACACAGTCCCTATCTACGA+GGG	-	chr6.2:36704-36723	MS.gene053110:intron	50.0%
	CAGCAGAGCGTGAAATTGTG+AGG	-	chr6.2:36831-36850	MS.gene053110:intron	50.0%
	CGCCATCCTTCGTCTTGATT+TGG	-	chr6.2:36742-36761	MS.gene053110:intron	50.0%
	GACCAGCCAAATCAAGACGA+AGG	+	chr6.2:36751-36770	None:intergenic	50.0%
	GAGGGACATGAAGGAAAAGC+TGG	-	chr6.2:36850-36869	MS.gene053110:intron	50.0%
	GGGCATAACCCTCGTAGATA+GGG	+	chr6.2:36715-36734	None:intergenic	50.0%
	GTTCTTTCACTCTACGCCAG+TGG	-	chr6.2:36317-36336	MS.gene053110:CDS	50.0%
!	ATTACCGGTTGTACGACCAC+TGG	+	chr6.2:36336-36355	None:intergenic	50.0%
!	GGAGGTACAACCATGTTTCC+TGG	-	chr6.2:37124-37143	MS.gene053110:CDS	50.0%
!!	CTATTGGCGCTGAGCGTTTT+CGG	-	chr6.2:36969-36988	MS.gene053110:CDS	50.0%
	ACGAGGACGACCAACAATGC+TGG	+	chr6.2:36000-36019	None:intergenic	55.0%
	ATCCAAGACCAGCTCTGCAG+TGG	-	chr6.2:36910-36929	MS.gene053110:CDS	55.0%
	CAAGACGAAGGATGGCGTGT+GGG	+	chr6.2:36739-36758	None:intergenic	55.0%
	CCACACAGTCCCTATCTACG+AGG	-	chr6.2:36703-36722	MS.gene053110:intron	55.0%
	CCATTCCCACCATGGATGGT+TGG	+	chr6.2:37012-37031	None:intergenic	55.0%
	CCTCGTAGATAGGGACTGTG+TGG	+	chr6.2:36706-36725	None:intergenic	55.0%
	CGAGGACGACCAACAATGCT+GGG	+	chr6.2:35999-36018	None:intergenic	55.0%
	GAGAACTGGATGCTCTTCGG+GGG	+	chr6.2:36195-36214	None:intergenic	55.0%
	GCCGTGTTTCCCAGCATTGT+TGG	-	chr6.2:35987-36006	MS.gene053110:CDS	55.0%
	GCTTCCATTCCCACCATGGA+TGG	+	chr6.2:37016-37035	None:intergenic	55.0%
	GTTGGTCGTCCTCGTCATAC+TGG	-	chr6.2:36005-36024	MS.gene053110:CDS	55.0%
	TACGCCAGTGGTCGTACAAC+CGG	-	chr6.2:36329-36348	MS.gene053110:CDS	55.0%
	TCAAGACGAAGGATGGCGTG+TGG	+	chr6.2:36740-36759	None:intergenic	55.0%
	TGCAGCTTCCATTCCCACCA+TGG	+	chr6.2:37020-37039	None:intergenic	55.0%
!	ATGGTGGGAATGGAAGCTGC+AGG	-	chr6.2:37019-37038	MS.gene053110:CDS	55.0%
!	CCAACCATCCATGGTGGGAA+TGG	-	chr6.2:37009-37028	MS.gene053110:CDS	55.0%
!!!	TGAGCGTTTTCGGTGTCCAG+AGG	-	chr6.2:36979-36998	MS.gene053110:CDS	55.0%
	ACGAAGGATGGCGTGTGGGA+GGG	+	chr6.2:36735-36754	None:intergenic	60.0%
	ATGCTGGGAAACACGGCACG+CGG	+	chr6.2:35984-36003	None:intergenic	60.0%
	GCTCTTCTCCACTGCAGAGC+TGG	+	chr6.2:36921-36940	None:intergenic	60.0%
!	CTCCACTGCAGAGCTGGTCT+TGG	+	chr6.2:36915-36934	None:intergenic	60.0%
	GACGAAGGATGGCGTGTGGG+AGG	+	chr6.2:36736-36755	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	35775	37461	35775	ID=MS.gene053110
chr6.2	mRNA	35775	37461	35775	ID=MS.gene053110.t1;Parent=MS.gene053110
chr6.2	exon	37402	37461	37402	ID=MS.gene053110.t1.exon1;Parent=MS.gene053110.t1
chr6.2	CDS	37402	37461	37402	ID=cds.MS.gene053110.t1;Parent=MS.gene053110.t1
chr6.2	exon	36886	37279	36886	ID=MS.gene053110.t1.exon2;Parent=MS.gene053110.t1
chr6.2	CDS	36886	37279	36886	ID=cds.MS.gene053110.t1;Parent=MS.gene053110.t1
chr6.2	exon	35951	36564	35951	ID=MS.gene053110.t1.exon3;Parent=MS.gene053110.t1
chr6.2	CDS	35951	36564	35951	ID=cds.MS.gene053110.t1;Parent=MS.gene053110.t1
chr6.2	exon	35775	35840	35775	ID=MS.gene053110.t1.exon4;Parent=MS.gene053110.t1
chr6.2	CDS	35775	35840	35775	ID=cds.MS.gene053110.t1;Parent=MS.gene053110.t1

Gene Sequence

>MS.gene053110

ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACGGGAATGGTCAAGGTACCAGCTATTATAGATCACATTTTCTTCTTTCATTTTCATTTATTTTTTGTTCTCTGCCTTGTGGTGAATAGCTTCATATGACACATTATAGATTAACATTGGAATATACCATTTTTCAGGCAGGCTTTGCTGGAGATGATGCACCGCGTGCCGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCATACTGGTGTTATGGTTGGTATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAATCTAAACGTGGTATCCTCACTCTCAAGTACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTCGCCCCCGAAGAGCATCCAGTTCTCTTAACAGAAGCTCCTCTTAATCCAAAGGCCAATCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTGGCCATTCAGGCTGTTCTTTCACTCTACGCCAGTGGTCGTACAACCGGTAATCATTTCATGATATTATTATCCTATGCTTGGGTTTAATTGGCACGCTTGTACCATAAGCTAGCTTATCCATGGAGCTTTTAGATTGAGACTGACAATATGAGGCAACTTGTACTTTGTGTGAGCTGGCATATACCTATACTTTTACACGAACAGATATTTATTTGTCGTAGTAAAGTTTAGAGTTGTTCAATTTTCTCATCAACCAAGAGGCATAAATAACTATTCCTTATATTCTCTAAGTCGAATTCATTGTGATTTATAATTTTTCTCCGGTTTTGTTTTCAATTATGATGATTTATTTTTCTTATTTTTGCAGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTACGAGGGTTATGCCCTCCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGTGACCTGACTGATTACATGATGAAAATTCTGACAGAACGTGGTTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAAGTCATCACTATTGGCGCTGAGCGTTTTCGGTGTCCAGAGGTCTTATACCAACCATCCATGGTGGGAATGGAAGCTGCAGGAATTCATGAGACCACTTACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTTCCTGGCATTGCTGATAGAATGAGCAAGGAGATTTCTGCATTAGCACCCAGTAGCATGAAGATCAAGGTGGTAGCACCGCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTAAGCACCTTCCAACAGGTTTGTTTTTTTATTTGATTCATCTGATTTTCTGAATGTTGCTCGAAGATATATTCATAATCTATGACTGCTAATGAGTTAAATTAAACTTTCCTTTCCTTTGTGTGCAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGACCATCAATTGTGCATAGGAAGTGTTTCTAA

Protein sequence

>MS.gene053110.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF