AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032698


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032698.t1 MTR_6g004000 100.000 377 0 0 1 377 1 377 0.0 784
MS.gene032698.t1 MTR_0015s0130 97.613 377 9 0 1 377 1 377 0.0 771
MS.gene032698.t1 MTR_7g026230 97.082 377 11 0 1 377 1 377 0.0 769
MS.gene032698.t1 MTR_2g096840 97.082 377 11 0 1 377 1 377 0.0 768
MS.gene032698.t1 MTR_7g093260 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 MTR_3g095530 95.491 377 17 0 1 377 1 377 0.0 761
MS.gene032698.t1 MTR_2g008050 93.899 377 23 0 1 377 1 377 0.0 754
MS.gene032698.t1 MTR_7g027185 42.744 379 203 3 10 374 7 385 3.61e-120 353
MS.gene032698.t1 MTR_7g027185 43.944 355 186 2 10 351 7 361 2.68e-117 345
MS.gene032698.t1 MTR_7g027185 46.906 307 161 1 10 314 7 313 1.07e-109 324
MS.gene032698.t1 MTR_5g066400 37.584 447 205 12 1 376 1 444 3.83e-92 283
MS.gene032698.t1 MTR_8g464900 36.806 432 200 11 1 362 1 429 1.28e-85 266
MS.gene032698.t1 MTR_5g066400 34.978 446 190 12 1 376 1 416 2.49e-79 249
MS.gene032698.t1 MTR_8g089630 34.063 411 221 8 10 372 10 418 6.58e-72 231
MS.gene032698.t1 MTR_5g066400 34.500 400 191 11 1 332 1 397 2.72e-68 221
MS.gene032698.t1 MTR_3g030550 37.500 376 209 9 11 377 5 363 2.79e-68 219
MS.gene032698.t1 MTR_2g445210 27.896 423 239 7 8 366 6 426 2.48e-56 191
MS.gene032698.t1 MTR_8g007440 34.470 264 146 7 77 319 9 266 2.02e-45 157
MS.gene032698.t1 MTR_2g445210 26.344 372 208 7 8 315 6 375 2.64e-42 152
MS.gene032698.t1 MTR_3g010170 29.966 297 184 9 91 371 179 467 8.27e-41 150
MS.gene032698.t1 MTR_8g070520 30.717 293 176 10 91 366 187 469 2.06e-36 138
MS.gene032698.t1 MTR_8g070520 30.216 278 168 9 91 352 187 454 4.51e-33 129
MS.gene032698.t1 MTR_3g067945 29.762 252 158 7 9 245 21 268 1.38e-23 102
MS.gene032698.t1 MTR_3g067945 31.967 122 80 2 250 368 586 707 3.79e-15 77.4
MS.gene032698.t1 MTR_8g008540 70.270 37 11 0 340 376 41 77 4.15e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032698.t1 AT3G12110 96.817 377 12 0 1 377 1 377 0.0 767
MS.gene032698.t1 AT3G53750 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 AT3G53750 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 AT2G37620 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 AT2G37620 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 AT2G37620 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 AT2G37620 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene032698.t1 AT3G46520 95.756 377 16 0 1 377 1 377 0.0 759
MS.gene032698.t1 AT3G46520 95.756 377 16 0 1 377 1 377 0.0 759
MS.gene032698.t1 AT5G59370 95.491 377 17 0 1 377 1 377 0.0 758
MS.gene032698.t1 AT5G59370 95.491 377 17 0 1 377 1 377 0.0 758
MS.gene032698.t1 AT5G09810 94.695 377 20 0 1 377 1 377 0.0 756
MS.gene032698.t1 AT1G49240 92.308 377 29 0 1 377 1 377 0.0 746
MS.gene032698.t1 AT3G18780 92.042 377 30 0 1 377 1 377 0.0 744
MS.gene032698.t1 AT3G18780 92.042 377 30 0 1 377 1 377 0.0 744
MS.gene032698.t1 AT3G18780 91.922 359 29 0 1 359 1 359 0.0 705
MS.gene032698.t1 AT2G42100 84.511 368 57 0 10 377 11 378 0.0 678
MS.gene032698.t1 AT2G42090 70.270 370 105 1 7 376 1 365 0.0 568
MS.gene032698.t1 AT2G42170 77.711 332 71 1 46 377 1 329 0.0 560
MS.gene032698.t1 AT2G42170 77.711 332 71 1 46 377 1 329 0.0 560
MS.gene032698.t1 AT2G42170 77.564 312 67 1 46 357 1 309 0.0 523
MS.gene032698.t1 AT2G42170 77.564 312 67 1 46 357 1 309 0.0 523
MS.gene032698.t1 AT2G42170 77.876 226 47 1 152 377 9 231 4.17e-132 377
MS.gene032698.t1 AT3G27000 43.008 379 202 3 10 374 7 385 2.36e-121 356
MS.gene032698.t1 AT1G18450 37.020 443 209 9 1 376 1 440 3.29e-94 289
MS.gene032698.t1 AT1G13180 33.656 413 222 9 10 373 9 418 3.65e-72 231
MS.gene032698.t1 AT3G60830 37.995 379 211 9 7 377 1 363 3.51e-68 219
MS.gene032698.t1 AT3G33520 30.166 421 236 7 10 377 5 420 1.55e-59 198
MS.gene032698.t1 AT5G56180 30.986 284 171 9 91 358 50 324 3.93e-36 134
MS.gene032698.t1 AT5G56180 30.986 284 171 9 91 358 182 456 2.79e-35 135
MS.gene032698.t1 AT3G12380 30.620 258 154 8 9 245 21 274 1.71e-26 111
MS.gene032698.t1 AT3G12380 32.414 145 94 2 228 368 572 716 4.24e-16 80.5
MS.gene032698.t1 AT3G12380 30.469 256 151 8 9 245 21 268 8.90e-26 109
MS.gene032698.t1 AT3G12380 32.414 145 94 2 228 368 566 710 4.00e-16 80.5
MS.gene032698.t1 AT1G73910 35.862 145 74 3 1 129 1 142 1.98e-23 95.5
MS.gene032698.t1 AT1G73910 35.862 145 74 3 1 129 1 142 1.98e-23 95.5
MS.gene032698.t1 AT5G56180 31.683 202 115 8 91 281 182 371 5.14e-20 90.9
MS.gene032698.t1 AT1G73910 29.268 123 71 2 1 107 1 123 3.00e-12 64.7

Find 118 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTAACATTGTCCTTTC+AGG 0.196967 6.3:-87121 MS.gene032698:CDS
TGAAAGTCTCAAACATGATT+TGG 0.228707 6.3:+87962 None:intergenic
GCAGGTATTGTGTTGGATTC+TGG 0.230442 6.3:-87556 MS.gene032698:intron
CGCCATCCTTCGTCTTGATT+TGG 0.250680 6.3:-87482 MS.gene032698:CDS
TGCTATGTATGTGGCCATTC+AGG 0.263866 6.3:-87932 MS.gene032698:CDS
AAGAGAACTGGATGCTCTTC+GGG 0.272839 6.3:+88030 None:intergenic
CACCTTGATCTTCATGCTAC+TGG 0.286712 6.3:+87036 None:intergenic
GTCAACATCACATTTCATTA+TGG 0.291645 6.3:+87159 None:intergenic
CTGGATTGGTGGTTCTATCT+TGG 0.314091 6.3:-86984 MS.gene032698:CDS
AGCATGGTATTGTTAGCAAT+TGG 0.332769 6.3:-88107 MS.gene032698:CDS
CTAACAATACCATGCTCAAT+TGG 0.337000 6.3:+88114 None:intergenic
ATCTTCTCACGATTGGCCTT+TGG 0.345852 6.3:+87988 None:intergenic
CTCCACTGCAGAGCTGGTCT+TGG 0.349066 6.3:+87312 None:intergenic
CGATTGGCCTTTGGATTAAG+AGG 0.360842 6.3:+87997 None:intergenic
AAACCTGTTGGAAGGTGCTT+AGG 0.362509 6.3:+86957 None:intergenic
GAAAGTCTCAAACATGATTT+GGG 0.367813 6.3:+87963 None:intergenic
GGGATGACATGGAAAAGATT+TGG 0.369928 6.3:-88086 MS.gene032698:CDS
TACTGGTGTTATGGTTGGTA+TGG 0.379253 6.3:-88202 MS.gene032698:CDS
CACTTCCTATGCACAATTGA+TGG 0.381676 6.3:+86792 None:intergenic
GGAGGTACAACCATGTTTCC+TGG 0.389369 6.3:-87100 MS.gene032698:CDS
TCCTCGTCATACTGGTGTTA+TGG 0.389893 6.3:-88211 MS.gene032698:CDS
GGAGCTTCTGTTAAGAGAAC+TGG 0.393950 6.3:+88018 None:intergenic
GTTGGTCGTCCTCGTCATAC+TGG 0.402593 6.3:-88219 MS.gene032698:CDS
AGGGCATAACCCTCGTAGAT+AGG 0.410475 6.3:+87511 None:intergenic
GCCGTGTTTCCCAGCATTGT+TGG 0.417879 6.3:-88237 MS.gene032698:CDS
TAAGAGAACTGGATGCTCTT+CGG 0.421656 6.3:+88029 None:intergenic
GATGGGCAAGTCATCACTAT+TGG 0.422821 6.3:-87271 MS.gene032698:CDS
ATCCCTAAGCACCTTCCAAC+AGG 0.423722 6.3:-86960 MS.gene032698:intron
TTGGGTCATCTTCTCACGAT+TGG 0.425034 6.3:+87981 None:intergenic
CTTGTTTGTGACAATGGAAC+GGG 0.425360 6.3:-88422 MS.gene032698:CDS
ATCCTTCGTCTTGATTTGGC+TGG 0.433881 6.3:-87478 MS.gene032698:CDS
GCTCTTCTCCACTGCAGAGC+TGG 0.449641 6.3:+87306 None:intergenic
CAACCTCTTGTTTGTGACAA+TGG 0.449997 6.3:-88428 MS.gene032698:CDS
ATAGTGATGACTTGCCCATC+AGG 0.457656 6.3:+87274 None:intergenic
CCAACCATCCATGGTGGGAA+TGG 0.470099 6.3:-87215 MS.gene032698:CDS
CTGAGAGAAAGTACAGTGTC+TGG 0.474213 6.3:-87003 MS.gene032698:CDS
AACCTGTTGGAAGGTGCTTA+GGG 0.475906 6.3:+86958 None:intergenic
ACCTTGATCTTCATGCTACT+GGG 0.478858 6.3:+87037 None:intergenic
ACGAGGACGACCAACAATGC+TGG 0.486180 6.3:+88227 None:intergenic
GCTTCCATTCCCACCATGGA+TGG 0.492783 6.3:+87211 None:intergenic
TTTCATTATGGAGTTGTAAG+TGG 0.494092 6.3:+87171 None:intergenic
GACACGAAGCTCATTATAGA+AGG 0.496324 6.3:+88056 None:intergenic
TACGCCAGTGGTCGTACAAC+CGG 0.497426 6.3:-87895 MS.gene032698:intron
TAACAATACCATGCTCAATT+GGG 0.501628 6.3:+88115 None:intergenic
GATGGTTGGTATAAGACCTC+TGG 0.505376 6.3:+87229 None:intergenic
CACAATTTCACGCTCTGCTG+AGG 0.506159 6.3:+87396 None:intergenic
AAGTACAGTGTCTGGATTGG+TGG 0.508102 6.3:-86995 MS.gene032698:CDS
CCATTCCCACCATGGATGGT+TGG 0.508876 6.3:+87215 None:intergenic
AAGGCTGAGTATGATGAGTC+TGG 0.508996 6.3:-86816 MS.gene032698:CDS
TGAATGGCCACATACATAGC+AGG 0.510407 6.3:+87934 None:intergenic
TGCAGCTTCCATTCCCACCA+TGG 0.512897 6.3:+87207 None:intergenic
CAGACACTGTACTTTCTCTC+AGG 0.515639 6.3:+87004 None:intergenic
GCATGGTATTGTTAGCAATT+GGG 0.518576 6.3:-88106 MS.gene032698:CDS
GAGTGAAAGAACAGCCTGAA+TGG 0.531083 6.3:+87918 None:intergenic
GACGAAGGATGGCGTGTGGG+AGG 0.532816 6.3:+87491 None:intergenic
ATTGTGTTGGATTCTGGTGA+TGG 0.535950 6.3:-87550 MS.gene032698:CDS
AAAGGACAATGTTACCATAC+AGG 0.536912 6.3:+87125 None:intergenic
CTAGCTCTTGCTCATAGTCA+AGG 0.538467 6.3:+87341 None:intergenic
ACGAAGGATGGCGTGTGGGA+GGG 0.539544 6.3:+87492 None:intergenic
GGGCATAACCCTCGTAGATA+GGG 0.542873 6.3:+87512 None:intergenic
ATCAGCAATGCCAGGAAACA+TGG 0.545439 6.3:+87090 None:intergenic
CGTCATACTGGTGTTATGGT+TGG 0.545699 6.3:-88207 MS.gene032698:CDS
CTCATTCTATCAGCAATGCC+AGG 0.546672 6.3:+87082 None:intergenic
TGTTAGCAATTGGGATGACA+TGG 0.552376 6.3:-88097 MS.gene032698:CDS
CAATGCCCCTGCTATGTATG+TGG 0.552795 6.3:-87941 MS.gene032698:CDS
AGCCAAATCAAGACGAAGGA+TGG 0.553843 6.3:+87480 None:intergenic
ACCAACAATGCTGGGAAACA+CGG 0.555422 6.3:+88236 None:intergenic
TGAAATGTGATGTTGACATC+AGG 0.556293 6.3:-87153 MS.gene032698:CDS
GAGGGACATGAAGGAAAAGC+TGG 0.556301 6.3:-87374 MS.gene032698:CDS
AGAGCTATGAGTTGCCTGAT+GGG 0.561878 6.3:-87288 MS.gene032698:CDS
AAGAGCTATGAGTTGCCTGA+TGG 0.561934 6.3:-87289 MS.gene032698:CDS
CGAGGACGACCAACAATGCT+GGG 0.562344 6.3:+88228 None:intergenic
ACCCAGTAGCATGAAGATCA+AGG 0.570670 6.3:-87038 MS.gene032698:CDS
ACTGGTGTTATGGTTGGTAT+GGG 0.571151 6.3:-88201 MS.gene032698:CDS
AATTTCACGCTCTGCTGAGG+TGG 0.572067 6.3:+87399 None:intergenic
TCTTGTTTGTGACAATGGAA+CGG 0.582019 6.3:-88423 MS.gene032698:CDS
ATCCAAGACCAGCTCTGCAG+TGG 0.582930 6.3:-87314 MS.gene032698:CDS
GACATCAGGAAAGACCTGTA+TGG 0.586044 6.3:-87139 MS.gene032698:CDS
TGAAATTGTGAGGGACATGA+AGG 0.588484 6.3:-87383 MS.gene032698:CDS
TTGTGACAATGGAACGGGAA+TGG 0.597725 6.3:-88417 MS.gene032698:CDS
GGTCTTATACCAACCATCCA+TGG 0.598084 6.3:-87224 MS.gene032698:CDS
CTGGACCATCAATTGTGCAT+AGG 0.599358 6.3:-86797 MS.gene032698:CDS
CAATGGAACGGGAATGGTCA+AGG 0.601070 6.3:-88411 MS.gene032698:intron
CTCAAGTACCCAATTGAGCA+TGG 0.601570 6.3:-88123 MS.gene032698:CDS
ACATGGTTGTACCTCCTGAA+AGG 0.602998 6.3:+87107 None:intergenic
CAGCAGAGCGTGAAATTGTG+AGG 0.603654 6.3:-87393 MS.gene032698:CDS
ATTACCGGTTGTACGACCAC+TGG 0.605389 6.3:+87891 None:intergenic
AGAAGCTCCTCTTAATCCAA+AGG 0.605929 6.3:-88004 MS.gene032698:CDS
AGAAAGTACAGTGTCTGGAT+TGG 0.609058 6.3:-86998 MS.gene032698:CDS
ATGGTGGGAATGGAAGCTGC+AGG 0.613135 6.3:-87205 MS.gene032698:CDS
CAATTGGGTACTTGAGAGTG+AGG 0.613648 6.3:+88130 None:intergenic
CAAGACGAAGGATGGCGTGT+GGG 0.616699 6.3:+87488 None:intergenic
GTTCTTTCACTCTACGCCAG+TGG 0.617736 6.3:-87907 MS.gene032698:CDS
GTTCCATTGTCACAAACAAG+AGG 0.618990 6.3:+88425 None:intergenic
TAGCTCTTGCTCATAGTCAA+GGG 0.620110 6.3:+87342 None:intergenic
ATGAAAATTCTGACAGAACG+TGG 0.621840 6.3:-87433 MS.gene032698:CDS
AGCAGAGCGTGAAATTGTGA+GGG 0.623597 6.3:-87392 MS.gene032698:CDS
GAATGGCCACATACATAGCA+GGG 0.623873 6.3:+87935 None:intergenic
CATTGCTGATAGAATGAGCA+AGG 0.630326 6.3:-87077 MS.gene032698:CDS
GGTAACATTGTCCTTTCAGG+AGG 0.632428 6.3:-87118 MS.gene032698:CDS
ATGCTGGGAAACACGGCACG+CGG 0.638206 6.3:+88243 None:intergenic
TCAAGACGAAGGATGGCGTG+TGG 0.645593 6.3:+87487 None:intergenic
TGTGCAGATGTGGATTGCAA+AGG 0.646194 6.3:-86835 MS.gene032698:intron
GAAGAAGATGGCAGACGCTG+AGG 0.651588 6.3:-88456 None:intergenic
TTATACCAACCATCCATGGT+GGG 0.653612 6.3:-87220 MS.gene032698:CDS
AGATGCATATGTTGGTGATG+AGG 0.661651 6.3:-88172 MS.gene032698:CDS
CTTATACCAACCATCCATGG+TGG 0.662201 6.3:-87221 MS.gene032698:CDS
ACACTGTACTTTCTCTCAGG+CGG 0.665359 6.3:+87007 None:intergenic
GAGAACTGGATGCTCTTCGG+GGG 0.665855 6.3:+88032 None:intergenic
CCTCGTAGATAGGGACTGTG+TGG 0.679150 6.3:+87521 None:intergenic
CCACACAGTCCCTATCTACG+AGG 0.680054 6.3:-87521 MS.gene032698:CDS
AGAGAACTGGATGCTCTTCG+GGG 0.684661 6.3:+88031 None:intergenic
GACCAGCCAAATCAAGACGA+AGG 0.685950 6.3:+87476 None:intergenic
AATGGCCACATACATAGCAG+GGG 0.701226 6.3:+87936 None:intergenic
CACACAGTCCCTATCTACGA+GGG 0.710128 6.3:-87520 MS.gene032698:CDS
ACCATAACACCAGTATGACG+AGG 0.715543 6.3:+88210 None:intergenic
GATGAGGCACAATCTAAACG+TGG 0.755455 6.3:-88156 MS.gene032698:CDS
CAGTAGCATGAAGATCAAGG+TGG 0.775622 6.3:-87035 MS.gene032698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTCTTATTTTTGC+AGG - chr6.3:87660-87679 MS.gene032698:intron 15.0%
!! AAATAAAAAAACAAACCTGT+TGG + chr6.3:88292-88311 None:intergenic 20.0%
!! ATCATAATTGAAAACAAAAC+CGG + chr6.3:87638-87657 None:intergenic 20.0%
!! TAATATCATGAAATGATTAC+CGG + chr6.3:87361-87380 None:intergenic 20.0%
!!! TGTGATTTATAATTTTTCTC+CGG - chr6.3:87616-87635 MS.gene032698:intron 20.0%
! AAAATGTGATCTATAATAGC+TGG + chr6.3:86851-86870 None:intergenic 25.0%
! AATTCGACTTAGAGAATATA+AGG + chr6.3:87593-87612 None:intergenic 25.0%
! GACACATTATAGATTAACAT+TGG - chr6.3:86927-86946 MS.gene032698:intron 25.0%
! GATATTATTATCCTATGCTT+GGG - chr6.3:87374-87393 MS.gene032698:CDS 25.0%
! TGATATTATTATCCTATGCT+TGG - chr6.3:87373-87392 MS.gene032698:CDS 25.0%
!!! ATTGGAATATACCATTTTTC+AGG - chr6.3:86945-86964 MS.gene032698:intron 25.0%
AAAAAAACAAACCTGTTGGA+AGG + chr6.3:88288-88307 None:intergenic 30.0%
GAAAGTCTCAAACATGATTT+GGG + chr6.3:87274-87293 None:intergenic 30.0%
GAATAGTTATTTATGCCTCT+TGG + chr6.3:87571-87590 None:intergenic 30.0%
GTCAACATCACATTTCATTA+TGG + chr6.3:88078-88097 None:intergenic 30.0%
TAACAATACCATGCTCAATT+GGG + chr6.3:87122-87141 None:intergenic 30.0%
TGAAAGTCTCAAACATGATT+TGG + chr6.3:87275-87294 None:intergenic 30.0%
TTTCATTATGGAGTTGTAAG+TGG + chr6.3:88066-88085 None:intergenic 30.0%
! ATCTGTTCGTGTAAAAGTAT+AGG + chr6.3:87501-87520 None:intergenic 30.0%
! TTTTCATCATGTAATCAGTC+AGG + chr6.3:87788-87807 None:intergenic 30.0%
!! TATTTTTGCAGGTATTGTGT+TGG - chr6.3:87671-87690 MS.gene032698:intron 30.0%
AAAGGACAATGTTACCATAC+AGG + chr6.3:88112-88131 None:intergenic 35.0%
AGATTGAGACTGACAATATG+AGG - chr6.3:87445-87464 MS.gene032698:CDS 35.0%
AGCATGGTATTGTTAGCAAT+TGG - chr6.3:87127-87146 MS.gene032698:CDS 35.0%
ATATGAAGCTATTCACCACA+AGG + chr6.3:86907-86926 None:intergenic 35.0%
ATCCTATGCTTGGGTTTAAT+TGG - chr6.3:87383-87402 MS.gene032698:CDS 35.0%
ATGAAAATTCTGACAGAACG+TGG - chr6.3:87801-87820 MS.gene032698:intron 35.0%
CTAACAATACCATGCTCAAT+TGG + chr6.3:87123-87142 None:intergenic 35.0%
GCATGGTATTGTTAGCAATT+GGG - chr6.3:87128-87147 MS.gene032698:CDS 35.0%
TATGGTAACATTGTCCTTTC+AGG - chr6.3:88113-88132 MS.gene032698:CDS 35.0%
TGAAATGTGATGTTGACATC+AGG - chr6.3:88081-88100 MS.gene032698:CDS 35.0%
! CAATTTTCTCATCAACCAAG+AGG - chr6.3:87553-87572 MS.gene032698:CDS 35.0%
! CACCAACATATGCATCTTTT+TGG + chr6.3:87059-87078 None:intergenic 35.0%
! TCTTGTTTGTGACAATGGAA+CGG - chr6.3:86811-86830 MS.gene032698:CDS 35.0%
!!! ATTTTTTGTTCTCTGCCTTG+TGG - chr6.3:86889-86908 MS.gene032698:intron 35.0%
!!! GAATATACCATTTTTCAGGC+AGG - chr6.3:86949-86968 MS.gene032698:intron 35.0%
AACTTGTACTTTGTGTGAGC+TGG - chr6.3:87469-87488 MS.gene032698:CDS 40.0%
ACCTTGATCTTCATGCTACT+GGG + chr6.3:88200-88219 None:intergenic 40.0%
AGAAGCTCCTCTTAATCCAA+AGG - chr6.3:87230-87249 MS.gene032698:CDS 40.0%
ATTGTGTTGGATTCTGGTGA+TGG - chr6.3:87684-87703 MS.gene032698:intron 40.0%
CACTTCCTATGCACAATTGA+TGG + chr6.3:88445-88464 None:intergenic 40.0%
CATTGCTGATAGAATGAGCA+AGG - chr6.3:88157-88176 MS.gene032698:CDS 40.0%
CTTGTTTGTGACAATGGAAC+GGG - chr6.3:86812-86831 MS.gene032698:CDS 40.0%
GACACGAAGCTCATTATAGA+AGG + chr6.3:87181-87200 None:intergenic 40.0%
GGCCAAAAAGATGCATATGT+TGG - chr6.3:87054-87073 MS.gene032698:CDS 40.0%
GGGATGACATGGAAAAGATT+TGG - chr6.3:87148-87167 MS.gene032698:CDS 40.0%
GTCTCAATCTAAAAGCTCCA+TGG + chr6.3:87435-87454 None:intergenic 40.0%
GTTCCATTGTCACAAACAAG+AGG + chr6.3:86812-86831 None:intergenic 40.0%
TAAGAGAACTGGATGCTCTT+CGG + chr6.3:87208-87227 None:intergenic 40.0%
TAGCTCTTGCTCATAGTCAA+GGG + chr6.3:87895-87914 None:intergenic 40.0%
TGAAATTGTGAGGGACATGA+AGG - chr6.3:87851-87870 MS.gene032698:intron 40.0%
TGCCAATTAAACCCAAGCAT+AGG + chr6.3:87388-87407 None:intergenic 40.0%
TGTTAGCAATTGGGATGACA+TGG - chr6.3:87137-87156 MS.gene032698:CDS 40.0%
TTATACCAACCATCCATGGT+GGG - chr6.3:88014-88033 MS.gene032698:CDS 40.0%
! ACCATAAGCTAGCTTATCCA+TGG - chr6.3:87415-87434 MS.gene032698:CDS 40.0%
! AGAAAGTACAGTGTCTGGAT+TGG - chr6.3:88236-88255 MS.gene032698:CDS 40.0%
! CAACCTCTTGTTTGTGACAA+TGG - chr6.3:86806-86825 MS.gene032698:CDS 40.0%
! TCCATGGATAAGCTAGCTTA+TGG + chr6.3:87419-87438 None:intergenic 40.0%
!! ACTGGTGTTATGGTTGGTAT+GGG - chr6.3:87033-87052 MS.gene032698:CDS 40.0%
!! AGATGCATATGTTGGTGATG+AGG - chr6.3:87062-87081 MS.gene032698:CDS 40.0%
!! TACTGGTGTTATGGTTGGTA+TGG - chr6.3:87032-87051 MS.gene032698:CDS 40.0%
AAGAGAACTGGATGCTCTTC+GGG + chr6.3:87207-87226 None:intergenic 45.0%
AAGAGCTATGAGTTGCCTGA+TGG - chr6.3:87945-87964 MS.gene032698:CDS 45.0%
AAGGCTGAGTATGATGAGTC+TGG - chr6.3:88418-88437 MS.gene032698:CDS 45.0%
AATGGCCACATACATAGCAG+GGG + chr6.3:87301-87320 None:intergenic 45.0%
ACACTGTACTTTCTCTCAGG+CGG + chr6.3:88230-88249 None:intergenic 45.0%
ACATGGTTGTACCTCCTGAA+AGG + chr6.3:88130-88149 None:intergenic 45.0%
ACCAACAATGCTGGGAAACA+CGG + chr6.3:87001-87020 None:intergenic 45.0%
ACCATAACACCAGTATGACG+AGG + chr6.3:87027-87046 None:intergenic 45.0%
ACCCAGTAGCATGAAGATCA+AGG - chr6.3:88196-88215 MS.gene032698:CDS 45.0%
AGAGCTATGAGTTGCCTGAT+GGG - chr6.3:87946-87965 MS.gene032698:CDS 45.0%
AGCAAAGCCTGCCTGAAAAA+TGG + chr6.3:86959-86978 None:intergenic 45.0%
AGCAGAGCGTGAAATTGTGA+GGG - chr6.3:87842-87861 MS.gene032698:intron 45.0%
AGCCAAATCAAGACGAAGGA+TGG + chr6.3:87757-87776 None:intergenic 45.0%
ATCAGCAATGCCAGGAAACA+TGG + chr6.3:88147-88166 None:intergenic 45.0%
CAATCCACATCTGCACACAA+AGG + chr6.3:88396-88415 None:intergenic 45.0%
CAATTGGGTACTTGAGAGTG+AGG + chr6.3:87107-87126 None:intergenic 45.0%
CACATCTGCACACAAAGGAA+AGG + chr6.3:88391-88410 None:intergenic 45.0%
CACCTTGATCTTCATGCTAC+TGG + chr6.3:88201-88220 None:intergenic 45.0%
CAGACACTGTACTTTCTCTC+AGG + chr6.3:88233-88252 None:intergenic 45.0%
CAGTAGCATGAAGATCAAGG+TGG - chr6.3:88199-88218 MS.gene032698:CDS 45.0%
CTCAAGTACCCAATTGAGCA+TGG - chr6.3:87111-87130 MS.gene032698:CDS 45.0%
CTCATTCTATCAGCAATGCC+AGG + chr6.3:88155-88174 None:intergenic 45.0%
CTGGACCATCAATTGTGCAT+AGG - chr6.3:88437-88456 MS.gene032698:CDS 45.0%
CTTATACCAACCATCCATGG+TGG - chr6.3:88013-88032 MS.gene032698:CDS 45.0%
CTTTCCTTTGTGTGCAGATG+TGG - chr6.3:88389-88408 MS.gene032698:intron 45.0%
GAATGGCCACATACATAGCA+GGG + chr6.3:87302-87321 None:intergenic 45.0%
GACATCAGGAAAGACCTGTA+TGG - chr6.3:88095-88114 MS.gene032698:CDS 45.0%
GAGTGAAAGAACAGCCTGAA+TGG + chr6.3:87319-87338 None:intergenic 45.0%
GATGAGGCACAATCTAAACG+TGG - chr6.3:87078-87097 MS.gene032698:CDS 45.0%
GATGGGCAAGTCATCACTAT+TGG - chr6.3:87963-87982 MS.gene032698:CDS 45.0%
GGAGCTTCTGTTAAGAGAAC+TGG + chr6.3:87219-87238 None:intergenic 45.0%
GGTAACATTGTCCTTTCAGG+AGG - chr6.3:88116-88135 MS.gene032698:CDS 45.0%
TGAATGGCCACATACATAGC+AGG + chr6.3:87303-87322 None:intergenic 45.0%
TGCTATGTATGTGGCCATTC+AGG - chr6.3:87302-87321 MS.gene032698:CDS 45.0%
TTGGGTCATCTTCTCACGAT+TGG + chr6.3:87256-87275 None:intergenic 45.0%
TTGTGACAATGGAACGGGAA+TGG - chr6.3:86817-86836 MS.gene032698:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+TGG - chr6.3:88239-88258 MS.gene032698:CDS 45.0%
! ATAGTGATGACTTGCCCATC+AGG + chr6.3:87963-87982 None:intergenic 45.0%
! CTAGCTCTTGCTCATAGTCA+AGG + chr6.3:87896-87915 None:intergenic 45.0%
! CTGAGAGAAAGTACAGTGTC+TGG - chr6.3:88231-88250 MS.gene032698:CDS 45.0%
! GATGGTTGGTATAAGACCTC+TGG + chr6.3:88008-88027 None:intergenic 45.0%
! GCAGGTATTGTGTTGGATTC+TGG - chr6.3:87678-87697 MS.gene032698:intron 45.0%
! GGTCTTATACCAACCATCCA+TGG - chr6.3:88010-88029 MS.gene032698:CDS 45.0%
! TCCTCGTCATACTGGTGTTA+TGG - chr6.3:87023-87042 MS.gene032698:CDS 45.0%
! TGTGCAGATGTGGATTGCAA+AGG - chr6.3:88399-88418 MS.gene032698:intron 45.0%
!! AAACCTGTTGGAAGGTGCTT+AGG + chr6.3:88280-88299 None:intergenic 45.0%
!! AACCTGTTGGAAGGTGCTTA+GGG + chr6.3:88279-88298 None:intergenic 45.0%
!! ATCCTTCGTCTTGATTTGGC+TGG - chr6.3:87756-87775 MS.gene032698:intron 45.0%
!! ATCTTCTCACGATTGGCCTT+TGG + chr6.3:87249-87268 None:intergenic 45.0%
!! CGATTGGCCTTTGGATTAAG+AGG + chr6.3:87240-87259 None:intergenic 45.0%
!! CGTCATACTGGTGTTATGGT+TGG - chr6.3:87027-87046 MS.gene032698:CDS 45.0%
!! CTGGATTGGTGGTTCTATCT+TGG - chr6.3:88250-88269 MS.gene032698:CDS 45.0%
!!! ATTTTTCAGGCAGGCTTTGC+TGG - chr6.3:86958-86977 MS.gene032698:intron 45.0%
AATTTCACGCTCTGCTGAGG+TGG + chr6.3:87838-87857 None:intergenic 50.0%
AGAGAACTGGATGCTCTTCG+GGG + chr6.3:87206-87225 None:intergenic 50.0%
AGGGCATAACCCTCGTAGAT+AGG + chr6.3:87726-87745 None:intergenic 50.0%
ATCCCTAAGCACCTTCCAAC+AGG - chr6.3:88274-88293 MS.gene032698:intron 50.0%
CAATGCCCCTGCTATGTATG+TGG - chr6.3:87293-87312 MS.gene032698:CDS 50.0%
CAATGGAACGGGAATGGTCA+AGG - chr6.3:86823-86842 MS.gene032698:CDS 50.0%
CACAATTTCACGCTCTGCTG+AGG + chr6.3:87841-87860 None:intergenic 50.0%
CACACAGTCCCTATCTACGA+GGG - chr6.3:87714-87733 MS.gene032698:intron 50.0%
CAGCAGAGCGTGAAATTGTG+AGG - chr6.3:87841-87860 MS.gene032698:intron 50.0%
CGCCATCCTTCGTCTTGATT+TGG - chr6.3:87752-87771 MS.gene032698:intron 50.0%
GACCAGCCAAATCAAGACGA+AGG + chr6.3:87761-87780 None:intergenic 50.0%
GAGGGACATGAAGGAAAAGC+TGG - chr6.3:87860-87879 MS.gene032698:intron 50.0%
GGGCATAACCCTCGTAGATA+GGG + chr6.3:87725-87744 None:intergenic 50.0%
GTTCTTTCACTCTACGCCAG+TGG - chr6.3:87327-87346 MS.gene032698:CDS 50.0%
! ATTACCGGTTGTACGACCAC+TGG + chr6.3:87346-87365 None:intergenic 50.0%
! GGAGGTACAACCATGTTTCC+TGG - chr6.3:88134-88153 MS.gene032698:CDS 50.0%
!! CTATTGGCGCTGAGCGTTTT+AGG - chr6.3:87979-87998 MS.gene032698:CDS 50.0%
!! TGAGCGTTTTAGGTGTCCAG+AGG - chr6.3:87989-88008 MS.gene032698:CDS 50.0%
ACGAGGACGACCAACAATGC+TGG + chr6.3:87010-87029 None:intergenic 55.0%
ATCCAAGACCAGCTCTGCAG+TGG - chr6.3:87920-87939 MS.gene032698:CDS 55.0%
CAAGACGAAGGATGGCGTGT+GGG + chr6.3:87749-87768 None:intergenic 55.0%
CCACACAGTCCCTATCTACG+AGG - chr6.3:87713-87732 MS.gene032698:intron 55.0%
CCATTCCCACCATGGATGGT+TGG + chr6.3:88022-88041 None:intergenic 55.0%
CCTCGTAGATAGGGACTGTG+TGG + chr6.3:87716-87735 None:intergenic 55.0%
CGAGGACGACCAACAATGCT+GGG + chr6.3:87009-87028 None:intergenic 55.0%
GAGAACTGGATGCTCTTCGG+GGG + chr6.3:87205-87224 None:intergenic 55.0%
GCCGTGTTTCCCAGCATTGT+TGG - chr6.3:86997-87016 MS.gene032698:CDS 55.0%
GCTTCCATTCCCACCATGGA+TGG + chr6.3:88026-88045 None:intergenic 55.0%
GTTGGTCGTCCTCGTCATAC+TGG - chr6.3:87015-87034 MS.gene032698:CDS 55.0%
TACGCCAGTGGTCGTACAAC+CGG - chr6.3:87339-87358 MS.gene032698:CDS 55.0%
TCAAGACGAAGGATGGCGTG+TGG + chr6.3:87750-87769 None:intergenic 55.0%
TGCAGCTTCCATTCCCACCA+TGG + chr6.3:88030-88049 None:intergenic 55.0%
! ATGGTGGGAATGGAAGCTGC+AGG - chr6.3:88029-88048 MS.gene032698:CDS 55.0%
! CCAACCATCCATGGTGGGAA+TGG - chr6.3:88019-88038 MS.gene032698:CDS 55.0%
ACGAAGGATGGCGTGTGGGA+GGG + chr6.3:87745-87764 None:intergenic 60.0%
ATGCTGGGAAACACGGCACG+CGG + chr6.3:86994-87013 None:intergenic 60.0%
GCTCTTCTCCACTGCAGAGC+TGG + chr6.3:87931-87950 None:intergenic 60.0%
! CTCCACTGCAGAGCTGGTCT+TGG + chr6.3:87925-87944 None:intergenic 60.0%
GACGAAGGATGGCGTGTGGG+AGG + chr6.3:87746-87765 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 86785 88471 86785 ID=MS.gene032698
chr6.3 mRNA 86785 88471 86785 ID=MS.gene032698.t1;Parent=MS.gene032698
chr6.3 exon 88412 88471 88412 ID=MS.gene032698.t1.exon1;Parent=MS.gene032698.t1
chr6.3 CDS 88412 88471 88412 ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1
chr6.3 exon 87896 88289 87896 ID=MS.gene032698.t1.exon2;Parent=MS.gene032698.t1
chr6.3 CDS 87896 88289 87896 ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1
chr6.3 exon 86961 87574 86961 ID=MS.gene032698.t1.exon3;Parent=MS.gene032698.t1
chr6.3 CDS 86961 87574 86961 ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1
chr6.3 exon 86785 86850 86785 ID=MS.gene032698.t1.exon4;Parent=MS.gene032698.t1
chr6.3 CDS 86785 86850 86785 ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1
Gene Sequence

>MS.gene032698

ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACGGGAATGGTCAAGGTACCAGCTATTATAGATCACATTTTCTTCTTTCATTTTCATTTATTTTTTGTTCTCTGCCTTGTGGTGAATAGCTTCATATGACACATTATAGATTAACATTGGAATATACCATTTTTCAGGCAGGCTTTGCTGGAGATGATGCACCGCGTGCCGTGTTTCCCAGCATTGTTGGTCGTCCTCGTCATACTGGTGTTATGGTTGGTATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAATCTAAACGTGGTATCCTCACTCTCAAGTACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTCGCCCCCGAAGAGCATCCAGTTCTCTTAACAGAAGCTCCTCTTAATCCAAAGGCCAATCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTGGCCATTCAGGCTGTTCTTTCACTCTACGCCAGTGGTCGTACAACCGGTAATCATTTCATGATATTATTATCCTATGCTTGGGTTTAATTGGCACGCTTGTACCATAAGCTAGCTTATCCATGGAGCTTTTAGATTGAGACTGACAATATGAGGCAACTTGTACTTTGTGTGAGCTGGCATATACCTATACTTTTACACGAACAGATCTTTATTTGTCGTAGTAAAGTTTAGAGTTGTTCAATTTTCTCATCAACCAAGAGGCATAAATAACTATTCCTTATATTCTCTAAGTCGAATTCATTGTGATTTATAATTTTTCTCCGGTTTTGTTTTCAATTATGATGATTTATTTTTCTTATTTTTGCAGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTACGAGGGTTATGCCCTCCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGTGACCTGACTGATTACATGATGAAAATTCTGACAGAACGTGGTTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAAGTCATCACTATTGGCGCTGAGCGTTTTAGGTGTCCAGAGGTCTTATACCAACCATCCATGGTGGGAATGGAAGCTGCAGGAATTCATGAGACCACTTACAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTTCCTGGCATTGCTGATAGAATGAGCAAGGAGATTTCTGCATTAGCACCCAGTAGCATGAAGATCAAGGTGGTAGCACCGCCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTAAGCACCTTCCAACAGGTTTGTTTTTTTATTTGATTCATCTGATTTTCTGAATGTTGCTCGAAGATATATTCATAATCTATGACTGCTAATGAGTTAAATTAAACTTTCCTTTCCTTTGTGTGCAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGACCATCAATTGTGCATAGGAAGTGTTTCTAA

Protein sequence

>MS.gene032698.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF