Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032698.t1 | XP_013450689.1 | 100 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 3.60E-217 | 763.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032698.t1 | A2XLF2 | 96.8 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 1.7e-215 | 749.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032698.t1 | A0A072U4T5 | 100.0 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 2.6e-217 | 763.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032698.t1 | MTR_6g004000 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
MS.gene032698.t1 | MTR_0015s0130 | 97.613 | 377 | 9 | 0 | 1 | 377 | 1 | 377 | 0.0 | 771 |
MS.gene032698.t1 | MTR_7g026230 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
MS.gene032698.t1 | MTR_2g096840 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
MS.gene032698.t1 | MTR_7g093260 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | MTR_3g095530 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
MS.gene032698.t1 | MTR_2g008050 | 93.899 | 377 | 23 | 0 | 1 | 377 | 1 | 377 | 0.0 | 754 |
MS.gene032698.t1 | MTR_7g027185 | 42.744 | 379 | 203 | 3 | 10 | 374 | 7 | 385 | 3.61e-120 | 353 |
MS.gene032698.t1 | MTR_7g027185 | 43.944 | 355 | 186 | 2 | 10 | 351 | 7 | 361 | 2.68e-117 | 345 |
MS.gene032698.t1 | MTR_7g027185 | 46.906 | 307 | 161 | 1 | 10 | 314 | 7 | 313 | 1.07e-109 | 324 |
MS.gene032698.t1 | MTR_5g066400 | 37.584 | 447 | 205 | 12 | 1 | 376 | 1 | 444 | 3.83e-92 | 283 |
MS.gene032698.t1 | MTR_8g464900 | 36.806 | 432 | 200 | 11 | 1 | 362 | 1 | 429 | 1.28e-85 | 266 |
MS.gene032698.t1 | MTR_5g066400 | 34.978 | 446 | 190 | 12 | 1 | 376 | 1 | 416 | 2.49e-79 | 249 |
MS.gene032698.t1 | MTR_8g089630 | 34.063 | 411 | 221 | 8 | 10 | 372 | 10 | 418 | 6.58e-72 | 231 |
MS.gene032698.t1 | MTR_5g066400 | 34.500 | 400 | 191 | 11 | 1 | 332 | 1 | 397 | 2.72e-68 | 221 |
MS.gene032698.t1 | MTR_3g030550 | 37.500 | 376 | 209 | 9 | 11 | 377 | 5 | 363 | 2.79e-68 | 219 |
MS.gene032698.t1 | MTR_2g445210 | 27.896 | 423 | 239 | 7 | 8 | 366 | 6 | 426 | 2.48e-56 | 191 |
MS.gene032698.t1 | MTR_8g007440 | 34.470 | 264 | 146 | 7 | 77 | 319 | 9 | 266 | 2.02e-45 | 157 |
MS.gene032698.t1 | MTR_2g445210 | 26.344 | 372 | 208 | 7 | 8 | 315 | 6 | 375 | 2.64e-42 | 152 |
MS.gene032698.t1 | MTR_3g010170 | 29.966 | 297 | 184 | 9 | 91 | 371 | 179 | 467 | 8.27e-41 | 150 |
MS.gene032698.t1 | MTR_8g070520 | 30.717 | 293 | 176 | 10 | 91 | 366 | 187 | 469 | 2.06e-36 | 138 |
MS.gene032698.t1 | MTR_8g070520 | 30.216 | 278 | 168 | 9 | 91 | 352 | 187 | 454 | 4.51e-33 | 129 |
MS.gene032698.t1 | MTR_3g067945 | 29.762 | 252 | 158 | 7 | 9 | 245 | 21 | 268 | 1.38e-23 | 102 |
MS.gene032698.t1 | MTR_3g067945 | 31.967 | 122 | 80 | 2 | 250 | 368 | 586 | 707 | 3.79e-15 | 77.4 |
MS.gene032698.t1 | MTR_8g008540 | 70.270 | 37 | 11 | 0 | 340 | 376 | 41 | 77 | 4.15e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032698.t1 | AT3G12110 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 767 |
MS.gene032698.t1 | AT3G53750 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | AT3G53750 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | AT2G37620 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | AT2G37620 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | AT2G37620 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | AT2G37620 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
MS.gene032698.t1 | AT3G46520 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
MS.gene032698.t1 | AT3G46520 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
MS.gene032698.t1 | AT5G59370 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
MS.gene032698.t1 | AT5G59370 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 758 |
MS.gene032698.t1 | AT5G09810 | 94.695 | 377 | 20 | 0 | 1 | 377 | 1 | 377 | 0.0 | 756 |
MS.gene032698.t1 | AT1G49240 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
MS.gene032698.t1 | AT3G18780 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
MS.gene032698.t1 | AT3G18780 | 92.042 | 377 | 30 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
MS.gene032698.t1 | AT3G18780 | 91.922 | 359 | 29 | 0 | 1 | 359 | 1 | 359 | 0.0 | 705 |
MS.gene032698.t1 | AT2G42100 | 84.511 | 368 | 57 | 0 | 10 | 377 | 11 | 378 | 0.0 | 678 |
MS.gene032698.t1 | AT2G42090 | 70.270 | 370 | 105 | 1 | 7 | 376 | 1 | 365 | 0.0 | 568 |
MS.gene032698.t1 | AT2G42170 | 77.711 | 332 | 71 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
MS.gene032698.t1 | AT2G42170 | 77.711 | 332 | 71 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
MS.gene032698.t1 | AT2G42170 | 77.564 | 312 | 67 | 1 | 46 | 357 | 1 | 309 | 0.0 | 523 |
MS.gene032698.t1 | AT2G42170 | 77.564 | 312 | 67 | 1 | 46 | 357 | 1 | 309 | 0.0 | 523 |
MS.gene032698.t1 | AT2G42170 | 77.876 | 226 | 47 | 1 | 152 | 377 | 9 | 231 | 4.17e-132 | 377 |
MS.gene032698.t1 | AT3G27000 | 43.008 | 379 | 202 | 3 | 10 | 374 | 7 | 385 | 2.36e-121 | 356 |
MS.gene032698.t1 | AT1G18450 | 37.020 | 443 | 209 | 9 | 1 | 376 | 1 | 440 | 3.29e-94 | 289 |
MS.gene032698.t1 | AT1G13180 | 33.656 | 413 | 222 | 9 | 10 | 373 | 9 | 418 | 3.65e-72 | 231 |
MS.gene032698.t1 | AT3G60830 | 37.995 | 379 | 211 | 9 | 7 | 377 | 1 | 363 | 3.51e-68 | 219 |
MS.gene032698.t1 | AT3G33520 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 1.55e-59 | 198 |
MS.gene032698.t1 | AT5G56180 | 30.986 | 284 | 171 | 9 | 91 | 358 | 50 | 324 | 3.93e-36 | 134 |
MS.gene032698.t1 | AT5G56180 | 30.986 | 284 | 171 | 9 | 91 | 358 | 182 | 456 | 2.79e-35 | 135 |
MS.gene032698.t1 | AT3G12380 | 30.620 | 258 | 154 | 8 | 9 | 245 | 21 | 274 | 1.71e-26 | 111 |
MS.gene032698.t1 | AT3G12380 | 32.414 | 145 | 94 | 2 | 228 | 368 | 572 | 716 | 4.24e-16 | 80.5 |
MS.gene032698.t1 | AT3G12380 | 30.469 | 256 | 151 | 8 | 9 | 245 | 21 | 268 | 8.90e-26 | 109 |
MS.gene032698.t1 | AT3G12380 | 32.414 | 145 | 94 | 2 | 228 | 368 | 566 | 710 | 4.00e-16 | 80.5 |
MS.gene032698.t1 | AT1G73910 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 1.98e-23 | 95.5 |
MS.gene032698.t1 | AT1G73910 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 1.98e-23 | 95.5 |
MS.gene032698.t1 | AT5G56180 | 31.683 | 202 | 115 | 8 | 91 | 281 | 182 | 371 | 5.14e-20 | 90.9 |
MS.gene032698.t1 | AT1G73910 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.00e-12 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGGTAACATTGTCCTTTC+AGG | 0.196967 | 6.3:-87121 | MS.gene032698:CDS |
TGAAAGTCTCAAACATGATT+TGG | 0.228707 | 6.3:+87962 | None:intergenic |
GCAGGTATTGTGTTGGATTC+TGG | 0.230442 | 6.3:-87556 | MS.gene032698:intron |
CGCCATCCTTCGTCTTGATT+TGG | 0.250680 | 6.3:-87482 | MS.gene032698:CDS |
TGCTATGTATGTGGCCATTC+AGG | 0.263866 | 6.3:-87932 | MS.gene032698:CDS |
AAGAGAACTGGATGCTCTTC+GGG | 0.272839 | 6.3:+88030 | None:intergenic |
CACCTTGATCTTCATGCTAC+TGG | 0.286712 | 6.3:+87036 | None:intergenic |
GTCAACATCACATTTCATTA+TGG | 0.291645 | 6.3:+87159 | None:intergenic |
CTGGATTGGTGGTTCTATCT+TGG | 0.314091 | 6.3:-86984 | MS.gene032698:CDS |
AGCATGGTATTGTTAGCAAT+TGG | 0.332769 | 6.3:-88107 | MS.gene032698:CDS |
CTAACAATACCATGCTCAAT+TGG | 0.337000 | 6.3:+88114 | None:intergenic |
ATCTTCTCACGATTGGCCTT+TGG | 0.345852 | 6.3:+87988 | None:intergenic |
CTCCACTGCAGAGCTGGTCT+TGG | 0.349066 | 6.3:+87312 | None:intergenic |
CGATTGGCCTTTGGATTAAG+AGG | 0.360842 | 6.3:+87997 | None:intergenic |
AAACCTGTTGGAAGGTGCTT+AGG | 0.362509 | 6.3:+86957 | None:intergenic |
GAAAGTCTCAAACATGATTT+GGG | 0.367813 | 6.3:+87963 | None:intergenic |
GGGATGACATGGAAAAGATT+TGG | 0.369928 | 6.3:-88086 | MS.gene032698:CDS |
TACTGGTGTTATGGTTGGTA+TGG | 0.379253 | 6.3:-88202 | MS.gene032698:CDS |
CACTTCCTATGCACAATTGA+TGG | 0.381676 | 6.3:+86792 | None:intergenic |
GGAGGTACAACCATGTTTCC+TGG | 0.389369 | 6.3:-87100 | MS.gene032698:CDS |
TCCTCGTCATACTGGTGTTA+TGG | 0.389893 | 6.3:-88211 | MS.gene032698:CDS |
GGAGCTTCTGTTAAGAGAAC+TGG | 0.393950 | 6.3:+88018 | None:intergenic |
GTTGGTCGTCCTCGTCATAC+TGG | 0.402593 | 6.3:-88219 | MS.gene032698:CDS |
AGGGCATAACCCTCGTAGAT+AGG | 0.410475 | 6.3:+87511 | None:intergenic |
GCCGTGTTTCCCAGCATTGT+TGG | 0.417879 | 6.3:-88237 | MS.gene032698:CDS |
TAAGAGAACTGGATGCTCTT+CGG | 0.421656 | 6.3:+88029 | None:intergenic |
GATGGGCAAGTCATCACTAT+TGG | 0.422821 | 6.3:-87271 | MS.gene032698:CDS |
ATCCCTAAGCACCTTCCAAC+AGG | 0.423722 | 6.3:-86960 | MS.gene032698:intron |
TTGGGTCATCTTCTCACGAT+TGG | 0.425034 | 6.3:+87981 | None:intergenic |
CTTGTTTGTGACAATGGAAC+GGG | 0.425360 | 6.3:-88422 | MS.gene032698:CDS |
ATCCTTCGTCTTGATTTGGC+TGG | 0.433881 | 6.3:-87478 | MS.gene032698:CDS |
GCTCTTCTCCACTGCAGAGC+TGG | 0.449641 | 6.3:+87306 | None:intergenic |
CAACCTCTTGTTTGTGACAA+TGG | 0.449997 | 6.3:-88428 | MS.gene032698:CDS |
ATAGTGATGACTTGCCCATC+AGG | 0.457656 | 6.3:+87274 | None:intergenic |
CCAACCATCCATGGTGGGAA+TGG | 0.470099 | 6.3:-87215 | MS.gene032698:CDS |
CTGAGAGAAAGTACAGTGTC+TGG | 0.474213 | 6.3:-87003 | MS.gene032698:CDS |
AACCTGTTGGAAGGTGCTTA+GGG | 0.475906 | 6.3:+86958 | None:intergenic |
ACCTTGATCTTCATGCTACT+GGG | 0.478858 | 6.3:+87037 | None:intergenic |
ACGAGGACGACCAACAATGC+TGG | 0.486180 | 6.3:+88227 | None:intergenic |
GCTTCCATTCCCACCATGGA+TGG | 0.492783 | 6.3:+87211 | None:intergenic |
TTTCATTATGGAGTTGTAAG+TGG | 0.494092 | 6.3:+87171 | None:intergenic |
GACACGAAGCTCATTATAGA+AGG | 0.496324 | 6.3:+88056 | None:intergenic |
TACGCCAGTGGTCGTACAAC+CGG | 0.497426 | 6.3:-87895 | MS.gene032698:intron |
TAACAATACCATGCTCAATT+GGG | 0.501628 | 6.3:+88115 | None:intergenic |
GATGGTTGGTATAAGACCTC+TGG | 0.505376 | 6.3:+87229 | None:intergenic |
CACAATTTCACGCTCTGCTG+AGG | 0.506159 | 6.3:+87396 | None:intergenic |
AAGTACAGTGTCTGGATTGG+TGG | 0.508102 | 6.3:-86995 | MS.gene032698:CDS |
CCATTCCCACCATGGATGGT+TGG | 0.508876 | 6.3:+87215 | None:intergenic |
AAGGCTGAGTATGATGAGTC+TGG | 0.508996 | 6.3:-86816 | MS.gene032698:CDS |
TGAATGGCCACATACATAGC+AGG | 0.510407 | 6.3:+87934 | None:intergenic |
TGCAGCTTCCATTCCCACCA+TGG | 0.512897 | 6.3:+87207 | None:intergenic |
CAGACACTGTACTTTCTCTC+AGG | 0.515639 | 6.3:+87004 | None:intergenic |
GCATGGTATTGTTAGCAATT+GGG | 0.518576 | 6.3:-88106 | MS.gene032698:CDS |
GAGTGAAAGAACAGCCTGAA+TGG | 0.531083 | 6.3:+87918 | None:intergenic |
GACGAAGGATGGCGTGTGGG+AGG | 0.532816 | 6.3:+87491 | None:intergenic |
ATTGTGTTGGATTCTGGTGA+TGG | 0.535950 | 6.3:-87550 | MS.gene032698:CDS |
AAAGGACAATGTTACCATAC+AGG | 0.536912 | 6.3:+87125 | None:intergenic |
CTAGCTCTTGCTCATAGTCA+AGG | 0.538467 | 6.3:+87341 | None:intergenic |
ACGAAGGATGGCGTGTGGGA+GGG | 0.539544 | 6.3:+87492 | None:intergenic |
GGGCATAACCCTCGTAGATA+GGG | 0.542873 | 6.3:+87512 | None:intergenic |
ATCAGCAATGCCAGGAAACA+TGG | 0.545439 | 6.3:+87090 | None:intergenic |
CGTCATACTGGTGTTATGGT+TGG | 0.545699 | 6.3:-88207 | MS.gene032698:CDS |
CTCATTCTATCAGCAATGCC+AGG | 0.546672 | 6.3:+87082 | None:intergenic |
TGTTAGCAATTGGGATGACA+TGG | 0.552376 | 6.3:-88097 | MS.gene032698:CDS |
CAATGCCCCTGCTATGTATG+TGG | 0.552795 | 6.3:-87941 | MS.gene032698:CDS |
AGCCAAATCAAGACGAAGGA+TGG | 0.553843 | 6.3:+87480 | None:intergenic |
ACCAACAATGCTGGGAAACA+CGG | 0.555422 | 6.3:+88236 | None:intergenic |
TGAAATGTGATGTTGACATC+AGG | 0.556293 | 6.3:-87153 | MS.gene032698:CDS |
GAGGGACATGAAGGAAAAGC+TGG | 0.556301 | 6.3:-87374 | MS.gene032698:CDS |
AGAGCTATGAGTTGCCTGAT+GGG | 0.561878 | 6.3:-87288 | MS.gene032698:CDS |
AAGAGCTATGAGTTGCCTGA+TGG | 0.561934 | 6.3:-87289 | MS.gene032698:CDS |
CGAGGACGACCAACAATGCT+GGG | 0.562344 | 6.3:+88228 | None:intergenic |
ACCCAGTAGCATGAAGATCA+AGG | 0.570670 | 6.3:-87038 | MS.gene032698:CDS |
ACTGGTGTTATGGTTGGTAT+GGG | 0.571151 | 6.3:-88201 | MS.gene032698:CDS |
AATTTCACGCTCTGCTGAGG+TGG | 0.572067 | 6.3:+87399 | None:intergenic |
TCTTGTTTGTGACAATGGAA+CGG | 0.582019 | 6.3:-88423 | MS.gene032698:CDS |
ATCCAAGACCAGCTCTGCAG+TGG | 0.582930 | 6.3:-87314 | MS.gene032698:CDS |
GACATCAGGAAAGACCTGTA+TGG | 0.586044 | 6.3:-87139 | MS.gene032698:CDS |
TGAAATTGTGAGGGACATGA+AGG | 0.588484 | 6.3:-87383 | MS.gene032698:CDS |
TTGTGACAATGGAACGGGAA+TGG | 0.597725 | 6.3:-88417 | MS.gene032698:CDS |
GGTCTTATACCAACCATCCA+TGG | 0.598084 | 6.3:-87224 | MS.gene032698:CDS |
CTGGACCATCAATTGTGCAT+AGG | 0.599358 | 6.3:-86797 | MS.gene032698:CDS |
CAATGGAACGGGAATGGTCA+AGG | 0.601070 | 6.3:-88411 | MS.gene032698:intron |
CTCAAGTACCCAATTGAGCA+TGG | 0.601570 | 6.3:-88123 | MS.gene032698:CDS |
ACATGGTTGTACCTCCTGAA+AGG | 0.602998 | 6.3:+87107 | None:intergenic |
CAGCAGAGCGTGAAATTGTG+AGG | 0.603654 | 6.3:-87393 | MS.gene032698:CDS |
ATTACCGGTTGTACGACCAC+TGG | 0.605389 | 6.3:+87891 | None:intergenic |
AGAAGCTCCTCTTAATCCAA+AGG | 0.605929 | 6.3:-88004 | MS.gene032698:CDS |
AGAAAGTACAGTGTCTGGAT+TGG | 0.609058 | 6.3:-86998 | MS.gene032698:CDS |
ATGGTGGGAATGGAAGCTGC+AGG | 0.613135 | 6.3:-87205 | MS.gene032698:CDS |
CAATTGGGTACTTGAGAGTG+AGG | 0.613648 | 6.3:+88130 | None:intergenic |
CAAGACGAAGGATGGCGTGT+GGG | 0.616699 | 6.3:+87488 | None:intergenic |
GTTCTTTCACTCTACGCCAG+TGG | 0.617736 | 6.3:-87907 | MS.gene032698:CDS |
GTTCCATTGTCACAAACAAG+AGG | 0.618990 | 6.3:+88425 | None:intergenic |
TAGCTCTTGCTCATAGTCAA+GGG | 0.620110 | 6.3:+87342 | None:intergenic |
ATGAAAATTCTGACAGAACG+TGG | 0.621840 | 6.3:-87433 | MS.gene032698:CDS |
AGCAGAGCGTGAAATTGTGA+GGG | 0.623597 | 6.3:-87392 | MS.gene032698:CDS |
GAATGGCCACATACATAGCA+GGG | 0.623873 | 6.3:+87935 | None:intergenic |
CATTGCTGATAGAATGAGCA+AGG | 0.630326 | 6.3:-87077 | MS.gene032698:CDS |
GGTAACATTGTCCTTTCAGG+AGG | 0.632428 | 6.3:-87118 | MS.gene032698:CDS |
ATGCTGGGAAACACGGCACG+CGG | 0.638206 | 6.3:+88243 | None:intergenic |
TCAAGACGAAGGATGGCGTG+TGG | 0.645593 | 6.3:+87487 | None:intergenic |
TGTGCAGATGTGGATTGCAA+AGG | 0.646194 | 6.3:-86835 | MS.gene032698:intron |
GAAGAAGATGGCAGACGCTG+AGG | 0.651588 | 6.3:-88456 | None:intergenic |
TTATACCAACCATCCATGGT+GGG | 0.653612 | 6.3:-87220 | MS.gene032698:CDS |
AGATGCATATGTTGGTGATG+AGG | 0.661651 | 6.3:-88172 | MS.gene032698:CDS |
CTTATACCAACCATCCATGG+TGG | 0.662201 | 6.3:-87221 | MS.gene032698:CDS |
ACACTGTACTTTCTCTCAGG+CGG | 0.665359 | 6.3:+87007 | None:intergenic |
GAGAACTGGATGCTCTTCGG+GGG | 0.665855 | 6.3:+88032 | None:intergenic |
CCTCGTAGATAGGGACTGTG+TGG | 0.679150 | 6.3:+87521 | None:intergenic |
CCACACAGTCCCTATCTACG+AGG | 0.680054 | 6.3:-87521 | MS.gene032698:CDS |
AGAGAACTGGATGCTCTTCG+GGG | 0.684661 | 6.3:+88031 | None:intergenic |
GACCAGCCAAATCAAGACGA+AGG | 0.685950 | 6.3:+87476 | None:intergenic |
AATGGCCACATACATAGCAG+GGG | 0.701226 | 6.3:+87936 | None:intergenic |
CACACAGTCCCTATCTACGA+GGG | 0.710128 | 6.3:-87520 | MS.gene032698:CDS |
ACCATAACACCAGTATGACG+AGG | 0.715543 | 6.3:+88210 | None:intergenic |
GATGAGGCACAATCTAAACG+TGG | 0.755455 | 6.3:-88156 | MS.gene032698:CDS |
CAGTAGCATGAAGATCAAGG+TGG | 0.775622 | 6.3:-87035 | MS.gene032698:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTTTCTTATTTTTGC+AGG | - | chr6.3:87660-87679 | MS.gene032698:intron | 15.0% |
!! | AAATAAAAAAACAAACCTGT+TGG | + | chr6.3:88292-88311 | None:intergenic | 20.0% |
!! | ATCATAATTGAAAACAAAAC+CGG | + | chr6.3:87638-87657 | None:intergenic | 20.0% |
!! | TAATATCATGAAATGATTAC+CGG | + | chr6.3:87361-87380 | None:intergenic | 20.0% |
!!! | TGTGATTTATAATTTTTCTC+CGG | - | chr6.3:87616-87635 | MS.gene032698:intron | 20.0% |
! | AAAATGTGATCTATAATAGC+TGG | + | chr6.3:86851-86870 | None:intergenic | 25.0% |
! | AATTCGACTTAGAGAATATA+AGG | + | chr6.3:87593-87612 | None:intergenic | 25.0% |
! | GACACATTATAGATTAACAT+TGG | - | chr6.3:86927-86946 | MS.gene032698:intron | 25.0% |
! | GATATTATTATCCTATGCTT+GGG | - | chr6.3:87374-87393 | MS.gene032698:CDS | 25.0% |
! | TGATATTATTATCCTATGCT+TGG | - | chr6.3:87373-87392 | MS.gene032698:CDS | 25.0% |
!!! | ATTGGAATATACCATTTTTC+AGG | - | chr6.3:86945-86964 | MS.gene032698:intron | 25.0% |
AAAAAAACAAACCTGTTGGA+AGG | + | chr6.3:88288-88307 | None:intergenic | 30.0% | |
GAAAGTCTCAAACATGATTT+GGG | + | chr6.3:87274-87293 | None:intergenic | 30.0% | |
GAATAGTTATTTATGCCTCT+TGG | + | chr6.3:87571-87590 | None:intergenic | 30.0% | |
GTCAACATCACATTTCATTA+TGG | + | chr6.3:88078-88097 | None:intergenic | 30.0% | |
TAACAATACCATGCTCAATT+GGG | + | chr6.3:87122-87141 | None:intergenic | 30.0% | |
TGAAAGTCTCAAACATGATT+TGG | + | chr6.3:87275-87294 | None:intergenic | 30.0% | |
TTTCATTATGGAGTTGTAAG+TGG | + | chr6.3:88066-88085 | None:intergenic | 30.0% | |
! | ATCTGTTCGTGTAAAAGTAT+AGG | + | chr6.3:87501-87520 | None:intergenic | 30.0% |
! | TTTTCATCATGTAATCAGTC+AGG | + | chr6.3:87788-87807 | None:intergenic | 30.0% |
!! | TATTTTTGCAGGTATTGTGT+TGG | - | chr6.3:87671-87690 | MS.gene032698:intron | 30.0% |
AAAGGACAATGTTACCATAC+AGG | + | chr6.3:88112-88131 | None:intergenic | 35.0% | |
AGATTGAGACTGACAATATG+AGG | - | chr6.3:87445-87464 | MS.gene032698:CDS | 35.0% | |
AGCATGGTATTGTTAGCAAT+TGG | - | chr6.3:87127-87146 | MS.gene032698:CDS | 35.0% | |
ATATGAAGCTATTCACCACA+AGG | + | chr6.3:86907-86926 | None:intergenic | 35.0% | |
ATCCTATGCTTGGGTTTAAT+TGG | - | chr6.3:87383-87402 | MS.gene032698:CDS | 35.0% | |
ATGAAAATTCTGACAGAACG+TGG | - | chr6.3:87801-87820 | MS.gene032698:intron | 35.0% | |
CTAACAATACCATGCTCAAT+TGG | + | chr6.3:87123-87142 | None:intergenic | 35.0% | |
GCATGGTATTGTTAGCAATT+GGG | - | chr6.3:87128-87147 | MS.gene032698:CDS | 35.0% | |
TATGGTAACATTGTCCTTTC+AGG | - | chr6.3:88113-88132 | MS.gene032698:CDS | 35.0% | |
TGAAATGTGATGTTGACATC+AGG | - | chr6.3:88081-88100 | MS.gene032698:CDS | 35.0% | |
! | CAATTTTCTCATCAACCAAG+AGG | - | chr6.3:87553-87572 | MS.gene032698:CDS | 35.0% |
! | CACCAACATATGCATCTTTT+TGG | + | chr6.3:87059-87078 | None:intergenic | 35.0% |
! | TCTTGTTTGTGACAATGGAA+CGG | - | chr6.3:86811-86830 | MS.gene032698:CDS | 35.0% |
!!! | ATTTTTTGTTCTCTGCCTTG+TGG | - | chr6.3:86889-86908 | MS.gene032698:intron | 35.0% |
!!! | GAATATACCATTTTTCAGGC+AGG | - | chr6.3:86949-86968 | MS.gene032698:intron | 35.0% |
AACTTGTACTTTGTGTGAGC+TGG | - | chr6.3:87469-87488 | MS.gene032698:CDS | 40.0% | |
ACCTTGATCTTCATGCTACT+GGG | + | chr6.3:88200-88219 | None:intergenic | 40.0% | |
AGAAGCTCCTCTTAATCCAA+AGG | - | chr6.3:87230-87249 | MS.gene032698:CDS | 40.0% | |
ATTGTGTTGGATTCTGGTGA+TGG | - | chr6.3:87684-87703 | MS.gene032698:intron | 40.0% | |
CACTTCCTATGCACAATTGA+TGG | + | chr6.3:88445-88464 | None:intergenic | 40.0% | |
CATTGCTGATAGAATGAGCA+AGG | - | chr6.3:88157-88176 | MS.gene032698:CDS | 40.0% | |
CTTGTTTGTGACAATGGAAC+GGG | - | chr6.3:86812-86831 | MS.gene032698:CDS | 40.0% | |
GACACGAAGCTCATTATAGA+AGG | + | chr6.3:87181-87200 | None:intergenic | 40.0% | |
GGCCAAAAAGATGCATATGT+TGG | - | chr6.3:87054-87073 | MS.gene032698:CDS | 40.0% | |
GGGATGACATGGAAAAGATT+TGG | - | chr6.3:87148-87167 | MS.gene032698:CDS | 40.0% | |
GTCTCAATCTAAAAGCTCCA+TGG | + | chr6.3:87435-87454 | None:intergenic | 40.0% | |
GTTCCATTGTCACAAACAAG+AGG | + | chr6.3:86812-86831 | None:intergenic | 40.0% | |
TAAGAGAACTGGATGCTCTT+CGG | + | chr6.3:87208-87227 | None:intergenic | 40.0% | |
TAGCTCTTGCTCATAGTCAA+GGG | + | chr6.3:87895-87914 | None:intergenic | 40.0% | |
TGAAATTGTGAGGGACATGA+AGG | - | chr6.3:87851-87870 | MS.gene032698:intron | 40.0% | |
TGCCAATTAAACCCAAGCAT+AGG | + | chr6.3:87388-87407 | None:intergenic | 40.0% | |
TGTTAGCAATTGGGATGACA+TGG | - | chr6.3:87137-87156 | MS.gene032698:CDS | 40.0% | |
TTATACCAACCATCCATGGT+GGG | - | chr6.3:88014-88033 | MS.gene032698:CDS | 40.0% | |
! | ACCATAAGCTAGCTTATCCA+TGG | - | chr6.3:87415-87434 | MS.gene032698:CDS | 40.0% |
! | AGAAAGTACAGTGTCTGGAT+TGG | - | chr6.3:88236-88255 | MS.gene032698:CDS | 40.0% |
! | CAACCTCTTGTTTGTGACAA+TGG | - | chr6.3:86806-86825 | MS.gene032698:CDS | 40.0% |
! | TCCATGGATAAGCTAGCTTA+TGG | + | chr6.3:87419-87438 | None:intergenic | 40.0% |
!! | ACTGGTGTTATGGTTGGTAT+GGG | - | chr6.3:87033-87052 | MS.gene032698:CDS | 40.0% |
!! | AGATGCATATGTTGGTGATG+AGG | - | chr6.3:87062-87081 | MS.gene032698:CDS | 40.0% |
!! | TACTGGTGTTATGGTTGGTA+TGG | - | chr6.3:87032-87051 | MS.gene032698:CDS | 40.0% |
AAGAGAACTGGATGCTCTTC+GGG | + | chr6.3:87207-87226 | None:intergenic | 45.0% | |
AAGAGCTATGAGTTGCCTGA+TGG | - | chr6.3:87945-87964 | MS.gene032698:CDS | 45.0% | |
AAGGCTGAGTATGATGAGTC+TGG | - | chr6.3:88418-88437 | MS.gene032698:CDS | 45.0% | |
AATGGCCACATACATAGCAG+GGG | + | chr6.3:87301-87320 | None:intergenic | 45.0% | |
ACACTGTACTTTCTCTCAGG+CGG | + | chr6.3:88230-88249 | None:intergenic | 45.0% | |
ACATGGTTGTACCTCCTGAA+AGG | + | chr6.3:88130-88149 | None:intergenic | 45.0% | |
ACCAACAATGCTGGGAAACA+CGG | + | chr6.3:87001-87020 | None:intergenic | 45.0% | |
ACCATAACACCAGTATGACG+AGG | + | chr6.3:87027-87046 | None:intergenic | 45.0% | |
ACCCAGTAGCATGAAGATCA+AGG | - | chr6.3:88196-88215 | MS.gene032698:CDS | 45.0% | |
AGAGCTATGAGTTGCCTGAT+GGG | - | chr6.3:87946-87965 | MS.gene032698:CDS | 45.0% | |
AGCAAAGCCTGCCTGAAAAA+TGG | + | chr6.3:86959-86978 | None:intergenic | 45.0% | |
AGCAGAGCGTGAAATTGTGA+GGG | - | chr6.3:87842-87861 | MS.gene032698:intron | 45.0% | |
AGCCAAATCAAGACGAAGGA+TGG | + | chr6.3:87757-87776 | None:intergenic | 45.0% | |
ATCAGCAATGCCAGGAAACA+TGG | + | chr6.3:88147-88166 | None:intergenic | 45.0% | |
CAATCCACATCTGCACACAA+AGG | + | chr6.3:88396-88415 | None:intergenic | 45.0% | |
CAATTGGGTACTTGAGAGTG+AGG | + | chr6.3:87107-87126 | None:intergenic | 45.0% | |
CACATCTGCACACAAAGGAA+AGG | + | chr6.3:88391-88410 | None:intergenic | 45.0% | |
CACCTTGATCTTCATGCTAC+TGG | + | chr6.3:88201-88220 | None:intergenic | 45.0% | |
CAGACACTGTACTTTCTCTC+AGG | + | chr6.3:88233-88252 | None:intergenic | 45.0% | |
CAGTAGCATGAAGATCAAGG+TGG | - | chr6.3:88199-88218 | MS.gene032698:CDS | 45.0% | |
CTCAAGTACCCAATTGAGCA+TGG | - | chr6.3:87111-87130 | MS.gene032698:CDS | 45.0% | |
CTCATTCTATCAGCAATGCC+AGG | + | chr6.3:88155-88174 | None:intergenic | 45.0% | |
CTGGACCATCAATTGTGCAT+AGG | - | chr6.3:88437-88456 | MS.gene032698:CDS | 45.0% | |
CTTATACCAACCATCCATGG+TGG | - | chr6.3:88013-88032 | MS.gene032698:CDS | 45.0% | |
CTTTCCTTTGTGTGCAGATG+TGG | - | chr6.3:88389-88408 | MS.gene032698:intron | 45.0% | |
GAATGGCCACATACATAGCA+GGG | + | chr6.3:87302-87321 | None:intergenic | 45.0% | |
GACATCAGGAAAGACCTGTA+TGG | - | chr6.3:88095-88114 | MS.gene032698:CDS | 45.0% | |
GAGTGAAAGAACAGCCTGAA+TGG | + | chr6.3:87319-87338 | None:intergenic | 45.0% | |
GATGAGGCACAATCTAAACG+TGG | - | chr6.3:87078-87097 | MS.gene032698:CDS | 45.0% | |
GATGGGCAAGTCATCACTAT+TGG | - | chr6.3:87963-87982 | MS.gene032698:CDS | 45.0% | |
GGAGCTTCTGTTAAGAGAAC+TGG | + | chr6.3:87219-87238 | None:intergenic | 45.0% | |
GGTAACATTGTCCTTTCAGG+AGG | - | chr6.3:88116-88135 | MS.gene032698:CDS | 45.0% | |
TGAATGGCCACATACATAGC+AGG | + | chr6.3:87303-87322 | None:intergenic | 45.0% | |
TGCTATGTATGTGGCCATTC+AGG | - | chr6.3:87302-87321 | MS.gene032698:CDS | 45.0% | |
TTGGGTCATCTTCTCACGAT+TGG | + | chr6.3:87256-87275 | None:intergenic | 45.0% | |
TTGTGACAATGGAACGGGAA+TGG | - | chr6.3:86817-86836 | MS.gene032698:CDS | 45.0% | |
! | AAGTACAGTGTCTGGATTGG+TGG | - | chr6.3:88239-88258 | MS.gene032698:CDS | 45.0% |
! | ATAGTGATGACTTGCCCATC+AGG | + | chr6.3:87963-87982 | None:intergenic | 45.0% |
! | CTAGCTCTTGCTCATAGTCA+AGG | + | chr6.3:87896-87915 | None:intergenic | 45.0% |
! | CTGAGAGAAAGTACAGTGTC+TGG | - | chr6.3:88231-88250 | MS.gene032698:CDS | 45.0% |
! | GATGGTTGGTATAAGACCTC+TGG | + | chr6.3:88008-88027 | None:intergenic | 45.0% |
! | GCAGGTATTGTGTTGGATTC+TGG | - | chr6.3:87678-87697 | MS.gene032698:intron | 45.0% |
! | GGTCTTATACCAACCATCCA+TGG | - | chr6.3:88010-88029 | MS.gene032698:CDS | 45.0% |
! | TCCTCGTCATACTGGTGTTA+TGG | - | chr6.3:87023-87042 | MS.gene032698:CDS | 45.0% |
! | TGTGCAGATGTGGATTGCAA+AGG | - | chr6.3:88399-88418 | MS.gene032698:intron | 45.0% |
!! | AAACCTGTTGGAAGGTGCTT+AGG | + | chr6.3:88280-88299 | None:intergenic | 45.0% |
!! | AACCTGTTGGAAGGTGCTTA+GGG | + | chr6.3:88279-88298 | None:intergenic | 45.0% |
!! | ATCCTTCGTCTTGATTTGGC+TGG | - | chr6.3:87756-87775 | MS.gene032698:intron | 45.0% |
!! | ATCTTCTCACGATTGGCCTT+TGG | + | chr6.3:87249-87268 | None:intergenic | 45.0% |
!! | CGATTGGCCTTTGGATTAAG+AGG | + | chr6.3:87240-87259 | None:intergenic | 45.0% |
!! | CGTCATACTGGTGTTATGGT+TGG | - | chr6.3:87027-87046 | MS.gene032698:CDS | 45.0% |
!! | CTGGATTGGTGGTTCTATCT+TGG | - | chr6.3:88250-88269 | MS.gene032698:CDS | 45.0% |
!!! | ATTTTTCAGGCAGGCTTTGC+TGG | - | chr6.3:86958-86977 | MS.gene032698:intron | 45.0% |
AATTTCACGCTCTGCTGAGG+TGG | + | chr6.3:87838-87857 | None:intergenic | 50.0% | |
AGAGAACTGGATGCTCTTCG+GGG | + | chr6.3:87206-87225 | None:intergenic | 50.0% | |
AGGGCATAACCCTCGTAGAT+AGG | + | chr6.3:87726-87745 | None:intergenic | 50.0% | |
ATCCCTAAGCACCTTCCAAC+AGG | - | chr6.3:88274-88293 | MS.gene032698:intron | 50.0% | |
CAATGCCCCTGCTATGTATG+TGG | - | chr6.3:87293-87312 | MS.gene032698:CDS | 50.0% | |
CAATGGAACGGGAATGGTCA+AGG | - | chr6.3:86823-86842 | MS.gene032698:CDS | 50.0% | |
CACAATTTCACGCTCTGCTG+AGG | + | chr6.3:87841-87860 | None:intergenic | 50.0% | |
CACACAGTCCCTATCTACGA+GGG | - | chr6.3:87714-87733 | MS.gene032698:intron | 50.0% | |
CAGCAGAGCGTGAAATTGTG+AGG | - | chr6.3:87841-87860 | MS.gene032698:intron | 50.0% | |
CGCCATCCTTCGTCTTGATT+TGG | - | chr6.3:87752-87771 | MS.gene032698:intron | 50.0% | |
GACCAGCCAAATCAAGACGA+AGG | + | chr6.3:87761-87780 | None:intergenic | 50.0% | |
GAGGGACATGAAGGAAAAGC+TGG | - | chr6.3:87860-87879 | MS.gene032698:intron | 50.0% | |
GGGCATAACCCTCGTAGATA+GGG | + | chr6.3:87725-87744 | None:intergenic | 50.0% | |
GTTCTTTCACTCTACGCCAG+TGG | - | chr6.3:87327-87346 | MS.gene032698:CDS | 50.0% | |
! | ATTACCGGTTGTACGACCAC+TGG | + | chr6.3:87346-87365 | None:intergenic | 50.0% |
! | GGAGGTACAACCATGTTTCC+TGG | - | chr6.3:88134-88153 | MS.gene032698:CDS | 50.0% |
!! | CTATTGGCGCTGAGCGTTTT+AGG | - | chr6.3:87979-87998 | MS.gene032698:CDS | 50.0% |
!! | TGAGCGTTTTAGGTGTCCAG+AGG | - | chr6.3:87989-88008 | MS.gene032698:CDS | 50.0% |
ACGAGGACGACCAACAATGC+TGG | + | chr6.3:87010-87029 | None:intergenic | 55.0% | |
ATCCAAGACCAGCTCTGCAG+TGG | - | chr6.3:87920-87939 | MS.gene032698:CDS | 55.0% | |
CAAGACGAAGGATGGCGTGT+GGG | + | chr6.3:87749-87768 | None:intergenic | 55.0% | |
CCACACAGTCCCTATCTACG+AGG | - | chr6.3:87713-87732 | MS.gene032698:intron | 55.0% | |
CCATTCCCACCATGGATGGT+TGG | + | chr6.3:88022-88041 | None:intergenic | 55.0% | |
CCTCGTAGATAGGGACTGTG+TGG | + | chr6.3:87716-87735 | None:intergenic | 55.0% | |
CGAGGACGACCAACAATGCT+GGG | + | chr6.3:87009-87028 | None:intergenic | 55.0% | |
GAGAACTGGATGCTCTTCGG+GGG | + | chr6.3:87205-87224 | None:intergenic | 55.0% | |
GCCGTGTTTCCCAGCATTGT+TGG | - | chr6.3:86997-87016 | MS.gene032698:CDS | 55.0% | |
GCTTCCATTCCCACCATGGA+TGG | + | chr6.3:88026-88045 | None:intergenic | 55.0% | |
GTTGGTCGTCCTCGTCATAC+TGG | - | chr6.3:87015-87034 | MS.gene032698:CDS | 55.0% | |
TACGCCAGTGGTCGTACAAC+CGG | - | chr6.3:87339-87358 | MS.gene032698:CDS | 55.0% | |
TCAAGACGAAGGATGGCGTG+TGG | + | chr6.3:87750-87769 | None:intergenic | 55.0% | |
TGCAGCTTCCATTCCCACCA+TGG | + | chr6.3:88030-88049 | None:intergenic | 55.0% | |
! | ATGGTGGGAATGGAAGCTGC+AGG | - | chr6.3:88029-88048 | MS.gene032698:CDS | 55.0% |
! | CCAACCATCCATGGTGGGAA+TGG | - | chr6.3:88019-88038 | MS.gene032698:CDS | 55.0% |
ACGAAGGATGGCGTGTGGGA+GGG | + | chr6.3:87745-87764 | None:intergenic | 60.0% | |
ATGCTGGGAAACACGGCACG+CGG | + | chr6.3:86994-87013 | None:intergenic | 60.0% | |
GCTCTTCTCCACTGCAGAGC+TGG | + | chr6.3:87931-87950 | None:intergenic | 60.0% | |
! | CTCCACTGCAGAGCTGGTCT+TGG | + | chr6.3:87925-87944 | None:intergenic | 60.0% |
GACGAAGGATGGCGTGTGGG+AGG | + | chr6.3:87746-87765 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 86785 | 88471 | 86785 | ID=MS.gene032698 |
chr6.3 | mRNA | 86785 | 88471 | 86785 | ID=MS.gene032698.t1;Parent=MS.gene032698 |
chr6.3 | exon | 88412 | 88471 | 88412 | ID=MS.gene032698.t1.exon1;Parent=MS.gene032698.t1 |
chr6.3 | CDS | 88412 | 88471 | 88412 | ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1 |
chr6.3 | exon | 87896 | 88289 | 87896 | ID=MS.gene032698.t1.exon2;Parent=MS.gene032698.t1 |
chr6.3 | CDS | 87896 | 88289 | 87896 | ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1 |
chr6.3 | exon | 86961 | 87574 | 86961 | ID=MS.gene032698.t1.exon3;Parent=MS.gene032698.t1 |
chr6.3 | CDS | 86961 | 87574 | 86961 | ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1 |
chr6.3 | exon | 86785 | 86850 | 86785 | ID=MS.gene032698.t1.exon4;Parent=MS.gene032698.t1 |
chr6.3 | CDS | 86785 | 86850 | 86785 | ID=cds.MS.gene032698.t1;Parent=MS.gene032698.t1 |
Gene Sequence |
Protein sequence |