AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45491

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45491.t1 MTR_2g096840 100.000 377 0 0 1 377 1 377 0.0 784
MS.gene45491.t1 MTR_0015s0130 98.674 377 5 0 1 377 1 377 0.0 776
MS.gene45491.t1 MTR_7g026230 97.082 377 11 0 1 377 1 377 0.0 768
MS.gene45491.t1 MTR_6g004000 97.082 377 11 0 1 377 1 377 0.0 768
MS.gene45491.t1 MTR_7g093260 96.021 377 15 0 1 377 1 377 0.0 765
MS.gene45491.t1 MTR_3g095530 94.960 377 19 0 1 377 1 377 0.0 761
MS.gene45491.t1 MTR_2g008050 93.634 377 24 0 1 377 1 377 0.0 752
MS.gene45491.t1 MTR_7g027185 42.480 379 204 3 10 374 7 385 1.41e-118 349
MS.gene45491.t1 MTR_7g027185 43.662 355 187 2 10 351 7 361 7.33e-116 341
MS.gene45491.t1 MTR_7g027185 46.580 307 162 1 10 314 7 313 2.75e-108 320
MS.gene45491.t1 MTR_5g066400 37.360 447 206 11 1 376 1 444 4.42e-93 286
MS.gene45491.t1 MTR_8g464900 36.574 432 201 10 1 362 1 429 1.71e-86 268
MS.gene45491.t1 MTR_5g066400 34.753 446 191 11 1 376 1 416 2.52e-80 252
MS.gene45491.t1 MTR_8g089630 34.550 411 219 8 10 372 10 418 5.49e-72 231
MS.gene45491.t1 MTR_5g066400 34.250 400 192 10 1 332 1 397 4.11e-69 223
MS.gene45491.t1 MTR_3g030550 37.105 380 213 9 7 377 1 363 1.07e-67 218
MS.gene45491.t1 MTR_2g445210 28.132 423 238 7 8 366 6 426 3.20e-55 188
MS.gene45491.t1 MTR_8g007440 35.227 264 144 7 77 319 9 266 3.45e-46 159
MS.gene45491.t1 MTR_2g445210 26.613 372 207 7 8 315 6 375 3.38e-41 149
MS.gene45491.t1 MTR_3g010170 30.303 297 183 9 91 371 179 467 2.14e-40 149
MS.gene45491.t1 MTR_8g070520 31.058 293 175 10 91 366 187 469 7.96e-36 136
MS.gene45491.t1 MTR_8g070520 30.576 278 167 9 91 352 187 454 1.62e-32 127
MS.gene45491.t1 MTR_3g067945 28.968 252 160 7 9 245 21 268 9.70e-22 97.4
MS.gene45491.t1 MTR_3g067945 33.607 122 78 2 250 368 586 707 4.69e-16 80.1
MS.gene45491.t1 MTR_8g008540 70.270 37 11 0 340 376 41 77 4.15e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45491.t1 AT3G12110 96.552 377 13 0 1 377 1 377 0.0 765
MS.gene45491.t1 AT3G53750 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45491.t1 AT3G53750 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45491.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45491.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45491.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45491.t1 AT2G37620 95.756 377 16 0 1 377 1 377 0.0 763
MS.gene45491.t1 AT5G59370 96.817 377 12 0 1 377 1 377 0.0 762
MS.gene45491.t1 AT5G59370 96.817 377 12 0 1 377 1 377 0.0 762
MS.gene45491.t1 AT3G46520 96.552 377 13 0 1 377 1 377 0.0 761
MS.gene45491.t1 AT3G46520 96.552 377 13 0 1 377 1 377 0.0 761
MS.gene45491.t1 AT5G09810 94.960 377 19 0 1 377 1 377 0.0 759
MS.gene45491.t1 AT1G49240 92.573 377 28 0 1 377 1 377 0.0 745
MS.gene45491.t1 AT3G18780 92.308 377 29 0 1 377 1 377 0.0 744
MS.gene45491.t1 AT3G18780 92.308 377 29 0 1 377 1 377 0.0 744
MS.gene45491.t1 AT3G18780 92.201 359 28 0 1 359 1 359 0.0 703
MS.gene45491.t1 AT2G42100 83.967 368 59 0 10 377 11 378 0.0 673
MS.gene45491.t1 AT2G42090 70.000 370 106 1 7 376 1 365 0.0 564
MS.gene45491.t1 AT2G42170 77.108 332 73 1 46 377 1 329 0.0 556
MS.gene45491.t1 AT2G42170 77.108 332 73 1 46 377 1 329 0.0 556
MS.gene45491.t1 AT2G42170 76.923 312 69 1 46 357 1 309 0.0 518
MS.gene45491.t1 AT2G42170 76.923 312 69 1 46 357 1 309 0.0 518
MS.gene45491.t1 AT2G42170 76.991 226 49 1 152 377 9 231 2.18e-130 373
MS.gene45491.t1 AT3G27000 43.536 379 200 4 10 374 7 385 4.89e-121 355
MS.gene45491.t1 AT1G18450 37.472 443 207 9 1 376 1 440 1.50e-95 292
MS.gene45491.t1 AT1G13180 34.223 412 219 9 10 372 9 417 2.76e-72 232
MS.gene45491.t1 AT3G60830 37.467 379 213 9 7 377 1 363 5.82e-67 216
MS.gene45491.t1 AT3G33520 30.166 421 236 7 10 377 5 420 5.44e-58 194
MS.gene45491.t1 AT5G56180 31.338 284 170 9 91 358 50 324 1.95e-35 132
MS.gene45491.t1 AT5G56180 31.338 284 170 9 91 358 182 456 1.19e-34 133
MS.gene45491.t1 AT3G12380 29.183 257 159 6 9 245 21 274 1.21e-24 106
MS.gene45491.t1 AT3G12380 32.738 168 106 4 207 368 550 716 3.86e-17 83.6
MS.gene45491.t1 AT3G12380 29.020 255 156 6 9 245 21 268 4.83e-24 104
MS.gene45491.t1 AT3G12380 32.738 168 106 4 207 368 544 710 3.74e-17 83.6
MS.gene45491.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.08e-23 95.1
MS.gene45491.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.08e-23 95.1
MS.gene45491.t1 AT5G56180 32.178 202 114 8 91 281 182 371 2.08e-19 89.4
MS.gene45491.t1 AT1G73910 29.268 123 71 2 1 107 1 123 3.00e-12 64.7

Find 96 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGATCTTCATGCTGCTT+GGG 0.250595 2.1:+6810424 None:intergenic
AGCAAAACCGGGTGCTCCTC+TGG 0.272892 2.1:+6811363 None:intergenic
TGCTATGTATGTTGCTATTC+AGG 0.277628 2.1:-6811265 MS.gene45491:CDS
CAACCACTGGTCTGTGATAA+TGG 0.278942 2.1:-6811973 MS.gene45491:CDS
AACATTTAGGCTGGATTTGC+TGG 0.289528 2.1:-6811609 MS.gene45491:intron
GGGATGACATGGAGAAAATT+TGG 0.308086 2.1:-6811419 MS.gene45491:CDS
AGGGCATATCCTTCATAAAT+AGG 0.317673 2.1:+6810897 None:intergenic
CACACGGAGTTCATTGTAAA+AGG 0.330285 2.1:+6811389 None:intergenic
ACCTTGATCTTCATGCTGCT+TGG 0.336588 2.1:+6810423 None:intergenic
AGCATGGTATTGTGAGTAAC+TGG 0.340011 2.1:-6811440 MS.gene45491:CDS
AATATGTGCAGGTATTGTTC+TGG 0.386737 2.1:-6810949 MS.gene45491:intron
GGTGCTTCAGTGAGCAAAAC+CGG 0.396077 2.1:+6811351 None:intergenic
CTCACAATACCATGCTCAAT+TGG 0.397001 2.1:+6811447 None:intergenic
CAAGCTCTTGCTCAAAATCA+AGG 0.399460 2.1:+6810727 None:intergenic
CTCATTCTGTCAGCAATGCC+AGG 0.400398 2.1:+6810468 None:intergenic
ATCCTTCGTCTTGATTTAGC+AGG 0.412905 2.1:-6810864 MS.gene45491:CDS
GATGGCCAGATCATCACTAT+TGG 0.420978 2.1:-6810657 MS.gene45491:CDS
CCGAGAGAAAATACAGTGTC+TGG 0.425088 2.1:-6810389 MS.gene45491:CDS
GCAAAACCGGGTGCTCCTCT+GGG 0.429592 2.1:+6811364 None:intergenic
TATGGAAATATTGTCCTTAG+TGG 0.444109 2.1:-6810507 MS.gene45491:CDS
CACTGGTGTGATGGTTGGCA+TGG 0.449957 2.1:-6811535 MS.gene45491:CDS
GATATCAGAAAGGACTTGTA+TGG 0.450042 2.1:-6810525 MS.gene45491:CDS
AGTGCTAAGAGAAGCTAAGA+TGG 0.454030 2.1:+6810356 None:intergenic
TATGCCAGTGGTCGAACAAC+CGG 0.454712 2.1:-6811228 MS.gene45491:intron
CTTGATCTTCATGCTGCTTG+GGG 0.455780 2.1:+6810425 None:intergenic
CAGCTCCAATAGTGATGATC+TGG 0.458059 2.1:+6810652 None:intergenic
GCTGTGTTTCCTAGCATTGT+TGG 0.477335 2.1:-6811570 MS.gene45491:CDS
TAATGGAACAGGAATGGTTA+AGG 0.478719 2.1:-6811956 MS.gene45491:intron
CTGGTCTGTGATAATGGAAC+AGG 0.481376 2.1:-6811967 MS.gene45491:CDS
AAATACAGTGTCTGGATTGG+TGG 0.485676 2.1:-6810381 MS.gene45491:CDS
GCAGGTATTGTTCTGGACTC+TGG 0.492720 2.1:-6810942 MS.gene45491:intron
ATAGTGATGATCTGGCCATC+AGG 0.494142 2.1:+6810660 None:intergenic
AAGGCCGAGTACGATGAATC+TGG 0.498285 2.1:-6810186 MS.gene45491:CDS
AAGAATAACCACGCTCGGTA+AGG 0.505013 2.1:+6810811 None:intergenic
ATGAAAATCCTTACCGAGCG+TGG 0.509930 2.1:-6810819 MS.gene45491:CDS
AGAAAATACAGTGTCTGGAT+TGG 0.510090 2.1:-6810384 MS.gene45491:CDS
TAGAGTCAATATACCACGCT+TGG 0.516667 2.1:+6811476 None:intergenic
CACACTGTGCCTATTTATGA+AGG 0.522782 2.1:-6810906 MS.gene45491:CDS
ATGCTAGGAAACACAGCCCT+TGG 0.526579 2.1:+6811576 None:intergenic
TACAATTTCACGCTCAGCTG+TGG 0.531096 2.1:+6810782 None:intergenic
TGCTGGAGATGATGCTCCAA+GGG 0.531721 2.1:-6811592 MS.gene45491:CDS
TCAGCCTTCCATGGTTGGAA+TGG 0.534177 2.1:-6810601 MS.gene45491:CDS
GGTGGTACTACTATGTTCCC+TGG 0.534257 2.1:-6810486 MS.gene45491:CDS
CGATTAGCCTTTGGATTGAG+CGG 0.541575 2.1:+6811330 None:intergenic
GACCAGTGGTTGAATATCCT+CGG 0.542292 2.1:+6811984 None:intergenic
CGCCGAGGATATTCAACCAC+TGG 0.542623 2.1:-6811986 MS.gene45491:CDS
CCCAAGCAGCATGAAGATCA+AGG 0.543751 2.1:-6810424 MS.gene45491:CDS
TCCTTCGTCTTGATTTAGCA+GGG 0.546953 2.1:-6810863 MS.gene45491:CDS
ATTGTTCTGGACTCTGGAGA+TGG 0.549481 2.1:-6810936 MS.gene45491:CDS
TGAAATTGTAAGAGATGTGA+AGG 0.550481 2.1:-6810769 MS.gene45491:CDS
CGTGGTCGACCAACAATGCT+AGG 0.552232 2.1:+6811561 None:intergenic
ACATAGTAGTACCACCACTA+AGG 0.559599 2.1:+6810493 None:intergenic
TTGCTGGAGATGATGCTCCA+AGG 0.560432 2.1:-6811593 MS.gene45491:CDS
GACGAAGGATAGCATGTGGA+AGG 0.560879 2.1:+6810877 None:intergenic
CTAACCGGTTGTTCGACCAC+TGG 0.563611 2.1:+6811224 None:intergenic
AAGCTCTTGCTCAAAATCAA+GGG 0.566750 2.1:+6810728 None:intergenic
ACCACGCCACACTGGTGTGA+TGG 0.574183 2.1:-6811544 MS.gene45491:CDS
CTAAAATATCCAATTGAGCA+TGG 0.574515 2.1:-6811456 MS.gene45491:CDS
TGTGGCCCCAGAGGAGCACC+CGG 0.576326 2.1:-6811370 MS.gene45491:CDS
TGAATAGCAACATACATAGC+AGG 0.576757 2.1:+6811267 None:intergenic
CGCCACACTGGTGTGATGGT+TGG 0.577341 2.1:-6811540 MS.gene45491:CDS
GTGCTTCAGTGAGCAAAACC+GGG 0.578129 2.1:+6811352 None:intergenic
GCTTCCATTCCAACCATGGA+AGG 0.580286 2.1:+6810597 None:intergenic
GGTGCTCCTCTGGGGCCACA+CGG 0.580962 2.1:+6811373 None:intergenic
AACAGCTTCCATTCCAACCA+TGG 0.591828 2.1:+6810593 None:intergenic
GAGCAAGGAAATTACCGCGT+TGG 0.592403 2.1:-6810448 MS.gene45491:CDS
GGAAATATTGTCCTTAGTGG+TGG 0.594437 2.1:-6810504 MS.gene45491:CDS
AGTGAAAGAATAACCACGCT+CGG 0.601145 2.1:+6810806 None:intergenic
AGGACCAGATTCATCGTACT+CGG 0.601521 2.1:+6810182 None:intergenic
TGTGAGTAACTGGGATGACA+TGG 0.601686 2.1:-6811430 MS.gene45491:CDS
TGAGCGTTTCCGTTGTCCTG+AGG 0.602279 2.1:-6810631 MS.gene45491:CDS
GTTGGTCGACCACGCCACAC+TGG 0.610992 2.1:-6811552 MS.gene45491:CDS
ATGGTTGGAATGGAAGCTGT+TGG 0.612805 2.1:-6810591 MS.gene45491:CDS
TGAAGCACCGCTCAATCCAA+AGG 0.625231 2.1:-6811337 MS.gene45491:CDS
CATGCTGCTTGGGGCCAACG+CGG 0.625414 2.1:+6810434 None:intergenic
CATTGCTGACAGAATGAGCA+AGG 0.625589 2.1:-6810463 MS.gene45491:CDS
ACCATCACACCAGTGTGGCG+TGG 0.628231 2.1:+6811543 None:intergenic
CTGTGATAATGGAACAGGAA+TGG 0.632340 2.1:-6811962 MS.gene45491:CDS
CAAAACCGGGTGCTCCTCTG+GGG 0.638105 2.1:+6811365 None:intergenic
TCAAGACGAAGGATAGCATG+TGG 0.640472 2.1:+6810873 None:intergenic
AAGAGTTATGAACTTCCTGA+TGG 0.641331 2.1:-6810675 MS.gene45491:CDS
TCATTCTGTCAGCAATGCCA+GGG 0.641800 2.1:+6810469 None:intergenic
ACTGGTGTGATGGTTGGCAT+GGG 0.642331 2.1:-6811534 MS.gene45491:CDS
GTTCTATCGCTCTATGCCAG+TGG 0.644036 2.1:-6811240 MS.gene45491:CDS
TGAACTCCGTGTGGCCCCAG+AGG 0.648993 2.1:-6811379 MS.gene45491:CDS
AAAGACAATGGCAGACGCCG+AGG 0.653794 2.1:-6812001 None:intergenic
ACGAAGGATAGCATGTGGAA+GGG 0.659324 2.1:+6810878 None:intergenic
GATGAAGCTCAGTCCAAGCG+TGG 0.663966 2.1:-6811489 MS.gene45491:CDS
AATGCAGATGTGGATTGCAA+AGG 0.664746 2.1:-6810205 MS.gene45491:intron
GTGTGATGTTGATATCAGAA+AGG 0.677167 2.1:-6810535 MS.gene45491:CDS
GTTCCATTATCACAGACCAG+TGG 0.693343 2.1:+6811970 None:intergenic
TGCCAACCATCACACCAGTG+TGG 0.706399 2.1:+6811538 None:intergenic
GCATGGTATTGTGAGTAACT+GGG 0.709006 2.1:-6811439 MS.gene45491:CDS
GCCCTGCTAAATCAAGACGA+AGG 0.714666 2.1:+6810862 None:intergenic
CTTCATAAATAGGCACAGTG+TGG 0.723850 2.1:+6810907 None:intergenic
AAGCAGCATGAAGATCAAGG+TGG 0.767710 2.1:-6810421 MS.gene45491:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGGAAAATAGATAAAAA+TGG - chr2.1:6811109-6811128 MS.gene45491:intron 15.0%
!!! AAAATGGATTTCAAAAAATT+TGG - chr2.1:6811125-6811144 MS.gene45491:intron 15.0%
!! ATGTCAAAAAAAGAATTCTA+AGG + chr2.1:6811875-6811894 None:intergenic 20.0%
!! TGAAGTCTAGTTAAAAAAAA+AGG - chr2.1:6811092-6811111 MS.gene45491:intron 20.0%
!!! TTGACATGTTTGATTTATTT+GGG - chr2.1:6811888-6811907 MS.gene45491:intron 20.0%
!!! TTTGACATGTTTGATTTATT+TGG - chr2.1:6811887-6811906 MS.gene45491:intron 20.0%
! AAAATTTGGTCCTATATCTA+TGG - chr2.1:6811139-6811158 MS.gene45491:intron 25.0%
! AACTCTATATTAATATGTGC+AGG - chr2.1:6811189-6811208 MS.gene45491:intron 25.0%
! CATAAAATAGCCATAGATAT+AGG + chr2.1:6811152-6811171 None:intergenic 25.0%
!! AGTACTAAATGTTGTTGTTA+AGG - chr2.1:6810369-6810388 MS.gene45491:CDS 25.0%
!! TATCTTTTCTGTTTTCTCTT+CGG - chr2.1:6810274-6810293 MS.gene45491:intron 25.0%
!!! ATGTTCTACGTTTTTTATAC+TGG - chr2.1:6810995-6811014 MS.gene45491:intron 25.0%
!!! TATTTTTGAAAATGCAGATG+TGG - chr2.1:6811934-6811953 MS.gene45491:intron 25.0%
AAAAATAAGCATGCATTGCA+AGG - chr2.1:6811023-6811042 MS.gene45491:intron 30.0%
CTAAAATATCCAATTGAGCA+TGG - chr2.1:6810693-6810712 MS.gene45491:CDS 30.0%
TAAATCGAGAAATGACTAAC+CGG + chr2.1:6810943-6810962 None:intergenic 30.0%
TATGGAAATATTGTCCTTAG+TGG - chr2.1:6811642-6811661 MS.gene45491:intron 30.0%
TCACAGCAAATTAGTAGAAA+GGG + chr2.1:6810499-6810518 None:intergenic 30.0%
TGAAATTGTAAGAGATGTGA+AGG - chr2.1:6811380-6811399 MS.gene45491:CDS 30.0%
TTCACAGCAAATTAGTAGAA+AGG + chr2.1:6810500-6810519 None:intergenic 30.0%
! CATTGTGATTTGCAACATTT+AGG - chr2.1:6810527-6810546 MS.gene45491:CDS 30.0%
!! TCAGTTTGCTAATGGATATA+TGG - chr2.1:6811047-6811066 MS.gene45491:intron 30.0%
AAGAGTTATGAACTTCCTGA+TGG - chr2.1:6811474-6811493 MS.gene45491:CDS 35.0%
AAGCTCTTGCTCAAAATCAA+GGG + chr2.1:6811424-6811443 None:intergenic 35.0%
AGAAAATACAGTGTCTGGAT+TGG - chr2.1:6811765-6811784 MS.gene45491:intron 35.0%
AGGGCATATCCTTCATAAAT+AGG + chr2.1:6811255-6811274 None:intergenic 35.0%
GATATCAGAAAGGACTTGTA+TGG - chr2.1:6811624-6811643 MS.gene45491:intron 35.0%
GGACAAAAAGATGCATATGT+TGG - chr2.1:6810636-6810655 MS.gene45491:CDS 35.0%
GTGTGATGTTGATATCAGAA+AGG - chr2.1:6811614-6811633 MS.gene45491:intron 35.0%
TAATGGAACAGGAATGGTTA+AGG - chr2.1:6810193-6810212 MS.gene45491:CDS 35.0%
TGAATAGCAACATACATAGC+AGG + chr2.1:6810885-6810904 None:intergenic 35.0%
! AATATGTGCAGGTATTGTTC+TGG - chr2.1:6811200-6811219 MS.gene45491:intron 35.0%
! CATTTTCTGTGCACAATTGA+AGG + chr2.1:6811990-6812009 None:intergenic 35.0%
! TGCTATGTATGTTGCTATTC+AGG - chr2.1:6810884-6810903 MS.gene45491:CDS 35.0%
! TTCTCTTAGCACTTTTCAAC+AGG - chr2.1:6811803-6811822 MS.gene45491:intron 35.0%
! TTTTTCCTGAAGAAGCGATT+TGG - chr2.1:6810246-6810265 MS.gene45491:intron 35.0%
!!! ATTTTCTCACGATTAGCCTT+TGG + chr2.1:6810831-6810850 None:intergenic 35.0%
AACATTTAGGCTGGATTTGC+TGG - chr2.1:6810540-6810559 MS.gene45491:CDS 40.0%
ACATAGTAGTACCACCACTA+AGG + chr2.1:6811659-6811678 None:intergenic 40.0%
AGCATGGTATTGTGAGTAAC+TGG - chr2.1:6810709-6810728 MS.gene45491:CDS 40.0%
AGTGAAAGAATAACCACGCT+CGG + chr2.1:6811346-6811365 None:intergenic 40.0%
AGTGCTAAGAGAAGCTAAGA+TGG + chr2.1:6811796-6811815 None:intergenic 40.0%
ATCCTTCGTCTTGATTTAGC+AGG - chr2.1:6811285-6811304 MS.gene45491:CDS 40.0%
CAAGCTCTTGCTCAAAATCA+AGG + chr2.1:6811425-6811444 None:intergenic 40.0%
CACACGGAGTTCATTGTAAA+AGG + chr2.1:6810763-6810782 None:intergenic 40.0%
CACACTGTGCCTATTTATGA+AGG - chr2.1:6811243-6811262 MS.gene45491:CDS 40.0%
CTCACAATACCATGCTCAAT+TGG + chr2.1:6810705-6810724 None:intergenic 40.0%
CTTCATAAATAGGCACAGTG+TGG + chr2.1:6811245-6811264 None:intergenic 40.0%
GAAAAAGAACCTCAGGACAA+CGG + chr2.1:6811530-6811549 None:intergenic 40.0%
GCATGGTATTGTGAGTAACT+GGG - chr2.1:6810710-6810729 MS.gene45491:CDS 40.0%
GGAAATATTGTCCTTAGTGG+TGG - chr2.1:6811645-6811664 MS.gene45491:intron 40.0%
GGCATATGCATAAATACACG+CGG + chr2.1:6811854-6811873 None:intergenic 40.0%
GGGATGACATGGAGAAAATT+TGG - chr2.1:6810730-6810749 MS.gene45491:CDS 40.0%
TAGAGTCAATATACCACGCT+TGG + chr2.1:6810676-6810695 None:intergenic 40.0%
TCCTTCGTCTTGATTTAGCA+GGG - chr2.1:6811286-6811305 MS.gene45491:CDS 40.0%
! AAATACAGTGTCTGGATTGG+TGG - chr2.1:6811768-6811787 MS.gene45491:intron 40.0%
! AATGCAGATGTGGATTGCAA+AGG - chr2.1:6811944-6811963 MS.gene45491:intron 40.0%
! CAGACACTGTATTTTCTCTC+GGG + chr2.1:6811762-6811781 None:intergenic 40.0%
! CCAGACACTGTATTTTCTCT+CGG + chr2.1:6811763-6811782 None:intergenic 40.0%
! CTCGGTAAGGATTTTCATCA+AGG + chr2.1:6811328-6811347 None:intergenic 40.0%
! CTTTTACAATGAACTCCGTG+TGG - chr2.1:6810761-6810780 MS.gene45491:CDS 40.0%
! GTGATTTGCAACATTTAGGC+TGG - chr2.1:6810531-6810550 MS.gene45491:CDS 40.0%
! TCTTTTCTACGATCTGCGAT+TGG - chr2.1:6810443-6810462 MS.gene45491:CDS 40.0%
!! CTGTGATAATGGAACAGGAA+TGG - chr2.1:6810187-6810206 MS.gene45491:CDS 40.0%
!! TGCAAGGTTCAGTTTGCTAA+TGG - chr2.1:6811039-6811058 MS.gene45491:intron 40.0%
!! TTTTCATCAAGGCATCAGTG+AGG + chr2.1:6811317-6811336 None:intergenic 40.0%
AACAGCTTCCATTCCAACCA+TGG + chr2.1:6811559-6811578 None:intergenic 45.0%
AAGAATAACCACGCTCGGTA+AGG + chr2.1:6811341-6811360 None:intergenic 45.0%
AAGCAGCATGAAGATCAAGG+TGG - chr2.1:6811728-6811747 MS.gene45491:intron 45.0%
ACCTTGATCTTCATGCTGCT+TGG + chr2.1:6811729-6811748 None:intergenic 45.0%
ACGAAGGATAGCATGTGGAA+GGG + chr2.1:6811274-6811293 None:intergenic 45.0%
AGGACCAGATTCATCGTACT+CGG + chr2.1:6811970-6811989 None:intergenic 45.0%
ATAGTGATGATCTGGCCATC+AGG + chr2.1:6811492-6811511 None:intergenic 45.0%
ATGAAAATCCTTACCGAGCG+TGG - chr2.1:6811330-6811349 MS.gene45491:CDS 45.0%
ATGGTTGGAATGGAAGCTGT+TGG - chr2.1:6811558-6811577 MS.gene45491:CDS 45.0%
CAGCTCCAATAGTGATGATC+TGG + chr2.1:6811500-6811519 None:intergenic 45.0%
CATAGCCAAATCGCTTCTTC+AGG + chr2.1:6810254-6810273 None:intergenic 45.0%
CATTGCTGACAGAATGAGCA+AGG - chr2.1:6811686-6811705 MS.gene45491:intron 45.0%
CCGAGAGAAAATACAGTGTC+TGG - chr2.1:6811760-6811779 MS.gene45491:intron 45.0%
CGCGGACAATGTGAGTATAT+CGG + chr2.1:6811836-6811855 None:intergenic 45.0%
GAAGGCTGAAAAAGAACCTC+AGG + chr2.1:6811537-6811556 None:intergenic 45.0%
GACCAGTGGTTGAATATCCT+CGG + chr2.1:6810168-6810187 None:intergenic 45.0%
GATGGCCAGATCATCACTAT+TGG - chr2.1:6811492-6811511 MS.gene45491:CDS 45.0%
GCTGTGTTTCCTAGCATTGT+TGG - chr2.1:6810579-6810598 MS.gene45491:CDS 45.0%
GTTCCATTATCACAGACCAG+TGG + chr2.1:6810182-6810201 None:intergenic 45.0%
TACAATTTCACGCTCAGCTG+TGG + chr2.1:6811370-6811389 None:intergenic 45.0%
TCAAGACGAAGGATAGCATG+TGG + chr2.1:6811279-6811298 None:intergenic 45.0%
TCATTCTGTCAGCAATGCCA+GGG + chr2.1:6811683-6811702 None:intergenic 45.0%
TGTGAGTAACTGGGATGACA+TGG - chr2.1:6810719-6810738 MS.gene45491:CDS 45.0%
! ACACTGTATTTTCTCTCGGG+TGG + chr2.1:6811759-6811778 None:intergenic 45.0%
! ATTGTTCTGGACTCTGGAGA+TGG - chr2.1:6811213-6811232 MS.gene45491:intron 45.0%
! CAACCACTGGTCTGTGATAA+TGG - chr2.1:6810176-6810195 MS.gene45491:CDS 45.0%
! CCTTGATCTTCATGCTGCTT+GGG + chr2.1:6811728-6811747 None:intergenic 45.0%
! CTTGATCTTCATGCTGCTTG+GGG + chr2.1:6811727-6811746 None:intergenic 45.0%
!! CGATTAGCCTTTGGATTGAG+CGG + chr2.1:6810822-6810841 None:intergenic 45.0%
!! CTGGTCTGTGATAATGGAAC+AGG - chr2.1:6810182-6810201 MS.gene45491:CDS 45.0%
!!! CTTTTTCAGCCTTCCATGGT+TGG - chr2.1:6811543-6811562 MS.gene45491:CDS 45.0%
!!! GGTTCTTTTTCAGCCTTCCA+TGG - chr2.1:6811539-6811558 MS.gene45491:CDS 45.0%
AAGGCCGAGTACGATGAATC+TGG - chr2.1:6811963-6811982 MS.gene45491:CDS 50.0%
ACTGGTGTGATGGTTGGCAT+GGG - chr2.1:6810615-6810634 MS.gene45491:CDS 50.0%
ATGCTAGGAAACACAGCCCT+TGG + chr2.1:6810576-6810595 None:intergenic 50.0%
CCCAAGCAGCATGAAGATCA+AGG - chr2.1:6811725-6811744 MS.gene45491:intron 50.0%
CTCATTCTGTCAGCAATGCC+AGG + chr2.1:6811684-6811703 None:intergenic 50.0%
GACGAAGGATAGCATGTGGA+AGG + chr2.1:6811275-6811294 None:intergenic 50.0%
GAGCAAGGAAATTACCGCGT+TGG - chr2.1:6811701-6811720 MS.gene45491:intron 50.0%
GCCCTGCTAAATCAAGACGA+AGG + chr2.1:6811290-6811309 None:intergenic 50.0%
GCTTCCATTCCAACCATGGA+AGG + chr2.1:6811555-6811574 None:intergenic 50.0%
GGTGCTTCAGTGAGCAAAAC+CGG + chr2.1:6810801-6810820 None:intergenic 50.0%
GGTGGTACTACTATGTTCCC+TGG - chr2.1:6811663-6811682 MS.gene45491:intron 50.0%
GTGCTTCAGTGAGCAAAACC+GGG + chr2.1:6810800-6810819 None:intergenic 50.0%
GTTCTATCGCTCTATGCCAG+TGG - chr2.1:6810909-6810928 MS.gene45491:CDS 50.0%
TATGCCAGTGGTCGAACAAC+CGG - chr2.1:6810921-6810940 MS.gene45491:CDS 50.0%
TCAGCCTTCCATGGTTGGAA+TGG - chr2.1:6811548-6811567 MS.gene45491:CDS 50.0%
TGCTGGAGATGATGCTCCAA+GGG - chr2.1:6810557-6810576 MS.gene45491:CDS 50.0%
TTGCTGGAGATGATGCTCCA+AGG - chr2.1:6810556-6810575 MS.gene45491:CDS 50.0%
! GCAGGTATTGTTCTGGACTC+TGG - chr2.1:6811207-6811226 MS.gene45491:intron 50.0%
!! TGAAGCACCGCTCAATCCAA+AGG - chr2.1:6810812-6810831 MS.gene45491:CDS 50.0%
CACTGGTGTGATGGTTGGCA+TGG - chr2.1:6810614-6810633 MS.gene45491:CDS 55.0%
CGCCGAGGATATTCAACCAC+TGG - chr2.1:6810163-6810182 MS.gene45491:CDS 55.0%
CGTGGTCGACCAACAATGCT+AGG + chr2.1:6810591-6810610 None:intergenic 55.0%
CTAACCGGTTGTTCGACCAC+TGG + chr2.1:6810928-6810947 None:intergenic 55.0%
GATGAAGCTCAGTCCAAGCG+TGG - chr2.1:6810660-6810679 MS.gene45491:CDS 55.0%
TGAGCGTTTCCGTTGTCCTG+AGG - chr2.1:6811518-6811537 MS.gene45491:CDS 55.0%
TGCCAACCATCACACCAGTG+TGG + chr2.1:6810614-6810633 None:intergenic 55.0%
ACCACGCCACACTGGTGTGA+TGG - chr2.1:6810605-6810624 MS.gene45491:CDS 60.0%
ACCATCACACCAGTGTGGCG+TGG + chr2.1:6810609-6810628 None:intergenic 60.0%
AGCAAAACCGGGTGCTCCTC+TGG + chr2.1:6810789-6810808 None:intergenic 60.0%
CAAAACCGGGTGCTCCTCTG+GGG + chr2.1:6810787-6810806 None:intergenic 60.0%
CGCCACACTGGTGTGATGGT+TGG - chr2.1:6810609-6810628 MS.gene45491:CDS 60.0%
GCAAAACCGGGTGCTCCTCT+GGG + chr2.1:6810788-6810807 None:intergenic 60.0%
GTTGGTCGACCACGCCACAC+TGG - chr2.1:6810597-6810616 MS.gene45491:CDS 65.0%
TGAACTCCGTGTGGCCCCAG+AGG - chr2.1:6810770-6810789 MS.gene45491:CDS 65.0%
! CATGCTGCTTGGGGCCAACG+CGG + chr2.1:6811718-6811737 None:intergenic 65.0%
!! GGTGCTCCTCTGGGGCCACA+CGG + chr2.1:6810779-6810798 None:intergenic 70.0%
!! TGTGGCCCCAGAGGAGCACC+CGG - chr2.1:6810779-6810798 MS.gene45491:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 6810155 6812016 6810155 ID=MS.gene45491
chr2.1 mRNA 6810155 6812016 6810155 ID=MS.gene45491.t1;Parent=MS.gene45491
chr2.1 exon 6811957 6812016 6811957 ID=MS.gene45491.t1.exon1;Parent=MS.gene45491.t1
chr2.1 CDS 6811957 6812016 6811957 ID=cds.MS.gene45491.t1;Parent=MS.gene45491.t1
chr2.1 exon 6811229 6811622 6811229 ID=MS.gene45491.t1.exon2;Parent=MS.gene45491.t1
chr2.1 CDS 6811229 6811622 6811229 ID=cds.MS.gene45491.t1;Parent=MS.gene45491.t1
chr2.1 exon 6810347 6810960 6810347 ID=MS.gene45491.t1.exon3;Parent=MS.gene45491.t1
chr2.1 CDS 6810347 6810960 6810347 ID=cds.MS.gene45491.t1;Parent=MS.gene45491.t1
chr2.1 exon 6810155 6810220 6810155 ID=MS.gene45491.t1.exon4;Parent=MS.gene45491.t1
chr2.1 CDS 6810155 6810220 6810155 ID=cds.MS.gene45491.t1;Parent=MS.gene45491.t1
Gene Sequence

>MS.gene45491

ATGGCAGACGCCGAGGATATTCAACCACTGGTCTGTGATAATGGAACAGGAATGGTTAAGGTAAAGCACAAATGTGATTCTAGTTTCACAATTTTTCCTGAAGAAGCGATTTGGCTATGTATCTTTTCTGTTTTCTCTTCGGTGTTGATAAATAATCGTTATAGCAATGTAGCGAAATTTGAACAAATCAATATTGTTTTGCGATACACTATCTAGTACTAAATGTTGTTGTTAAGGAGCTGCTGTAAGTCAATAGCACTATTGCATAGCAGAATTTGAATGAACTGTTCTTTTCTACGATCTGCGATTGGCAACATTGTTTTTGTTTGTTTGATAACGCTCCCTTTCTACTAATTTGCTGTGAAACTATTGCATTGTGATTTGCAACATTTAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGCATTGTTGGTCGACCACGCCACACTGGTGTGATGGTTGGCATGGGACAAAAAGATGCATATGTTGGTGATGAAGCTCAGTCCAAGCGTGGTATATTGACTCTAAAATATCCAATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCGGTTTTGCTCACTGAAGCACCGCTCAATCCAAAGGCTAATCGTGAGAAAATGACACAAATTATGTTTGAGACATTCAACACACCTGCTATGTATGTTGCTATTCAGGCTGTTCTATCGCTCTATGCCAGTGGTCGAACAACCGGTTAGTCATTTCTCGATTTAAGAAAACTAATGTCTCATGTCTAGTCTAGTTTATGTTCTACGTTTTTTATACTGGTCAGTAAAAATAAGCATGCATTGCAAGGTTCAGTTTGCTAATGGATATATGGAGCAGATATTGAATGTGAGTTATGAAGTCTAGTTAAAAAAAAAGGAAAATAGATAAAAATGGATTTCAAAAAATTTGGTCCTATATCTATGGCTATTTTATGATTAAATTCTGATTGAAAACTCTATATTAATATGTGCAGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCTATTTATGAAGGATATGCCCTTCCACATGCTATCCTTCGTCTTGATTTAGCAGGGCGTGACCTCACTGATGCCTTGATGAAAATCCTTACCGAGCGTGGTTATTCTTTCACTACCACAGCTGAGCGTGAAATTGTAAGAGATGTGAAGGAAAAGCTGTCTTATATTGCCCTTGATTTTGAGCAAGAGCTTGAAACTTCAAAAACAAGCTCTGCTGTTGAGAAGAGTTATGAACTTCCTGATGGCCAGATCATCACTATTGGAGCTGAGCGTTTCCGTTGTCCTGAGGTTCTTTTTCAGCCTTCCATGGTTGGAATGGAAGCTGTTGGCATTCACGAGACGACATACAACTCAATCATGAAGTGTGATGTTGATATCAGAAAGGACTTGTATGGAAATATTGTCCTTAGTGGTGGTACTACTATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATTACCGCGTTGGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAATACAGTGTCTGGATTGGTGGCTCCATCTTAGCTTCTCTTAGCACTTTTCAACAGGTGAGAAACCGATATACTCACATTGTCCGCGTGTATTTATGCATATGCCTTAGAATTCTTTTTTTGACATGTTTGATTTATTTGGGATACTAATGAATGATGAAACACTTATTTTTGAAAATGCAGATGTGGATTGCAAAGGCCGAGTACGATGAATCTGGTCCTTCAATTGTGCACAGAAAATGCTTTTAG
Protein sequence

>MS.gene45491.t1

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLSYIALDFEQELETSKTSSAVEKSYELPDGQIITIGAERFRCPEVLFQPSMVGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF