AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52664


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52664.t1 MTR_7g093260 100.000 377 0 0 1 377 1 377 0.0 785
MS.gene52664.t1 MTR_0015s0130 96.817 377 12 0 1 377 1 377 0.0 769
MS.gene52664.t1 MTR_2g096840 96.021 377 15 0 1 377 1 377 0.0 765
MS.gene52664.t1 MTR_6g004000 96.021 377 15 0 1 377 1 377 0.0 763
MS.gene52664.t1 MTR_3g095530 95.756 377 16 0 1 377 1 377 0.0 761
MS.gene52664.t1 MTR_7g026230 96.021 377 15 0 1 377 1 377 0.0 761
MS.gene52664.t1 MTR_2g008050 92.838 377 27 0 1 377 1 377 0.0 744
MS.gene52664.t1 MTR_7g027185 43.799 379 199 3 10 374 7 385 2.01e-120 354
MS.gene52664.t1 MTR_7g027185 45.070 355 182 2 10 351 7 361 9.32e-118 346
MS.gene52664.t1 MTR_7g027185 48.208 307 157 1 10 314 7 313 3.31e-110 325
MS.gene52664.t1 MTR_5g066400 37.136 447 207 12 1 376 1 444 1.61e-91 282
MS.gene52664.t1 MTR_8g464900 36.343 432 202 11 1 362 1 429 1.01e-84 264
MS.gene52664.t1 MTR_5g066400 34.529 446 192 12 1 376 1 416 9.86e-79 248
MS.gene52664.t1 MTR_8g089630 34.845 419 207 10 10 372 10 418 9.57e-72 230
MS.gene52664.t1 MTR_3g030550 37.766 376 208 9 11 377 5 363 2.48e-68 219
MS.gene52664.t1 MTR_5g066400 34.000 400 193 11 1 332 1 397 1.62e-67 219
MS.gene52664.t1 MTR_2g445210 27.869 427 242 7 4 366 2 426 3.20e-55 188
MS.gene52664.t1 MTR_8g007440 33.588 262 151 6 77 319 9 266 8.45e-45 155
MS.gene52664.t1 MTR_2g445210 26.330 376 211 7 4 315 2 375 2.80e-41 149
MS.gene52664.t1 MTR_3g010170 30.303 297 183 9 91 371 179 467 1.47e-39 146
MS.gene52664.t1 MTR_8g070520 31.058 293 175 10 91 366 187 469 2.41e-35 135
MS.gene52664.t1 MTR_8g070520 30.576 278 167 9 91 352 187 454 4.40e-32 126
MS.gene52664.t1 MTR_3g067945 29.762 252 158 7 9 245 21 268 3.59e-23 101
MS.gene52664.t1 MTR_3g067945 34.426 122 77 2 250 368 586 707 8.52e-16 79.3
MS.gene52664.t1 MTR_8g008540 70.270 37 11 0 340 376 41 77 4.15e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52664.t1 AT5G09810 95.756 377 16 0 1 377 1 377 0.0 762
MS.gene52664.t1 AT3G12110 95.756 377 16 0 1 377 1 377 0.0 760
MS.gene52664.t1 AT3G46520 95.756 377 16 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT3G53750 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT3G53750 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT3G46520 95.756 377 16 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT2G37620 95.491 377 17 0 1 377 1 377 0.0 759
MS.gene52664.t1 AT5G59370 95.491 377 17 0 1 377 1 377 0.0 758
MS.gene52664.t1 AT5G59370 95.491 377 17 0 1 377 1 377 0.0 758
MS.gene52664.t1 AT3G18780 90.981 377 34 0 1 377 1 377 0.0 737
MS.gene52664.t1 AT3G18780 90.981 377 34 0 1 377 1 377 0.0 737
MS.gene52664.t1 AT1G49240 90.716 377 35 0 1 377 1 377 0.0 735
MS.gene52664.t1 AT3G18780 90.808 359 33 0 1 359 1 359 0.0 696
MS.gene52664.t1 AT2G42100 85.326 368 54 0 10 377 11 378 0.0 677
MS.gene52664.t1 AT2G42090 71.351 370 101 1 7 376 1 365 0.0 568
MS.gene52664.t1 AT2G42170 78.313 332 69 1 46 377 1 329 0.0 560
MS.gene52664.t1 AT2G42170 78.313 332 69 1 46 377 1 329 0.0 560
MS.gene52664.t1 AT2G42170 78.205 312 65 1 46 357 1 309 0.0 522
MS.gene52664.t1 AT2G42170 78.205 312 65 1 46 357 1 309 0.0 522
MS.gene52664.t1 AT2G42170 78.761 226 45 1 152 377 9 231 5.79e-132 377
MS.gene52664.t1 AT3G27000 44.591 379 196 4 10 374 7 385 2.61e-122 358
MS.gene52664.t1 AT1G18450 36.569 443 211 9 1 376 1 440 7.98e-94 288
MS.gene52664.t1 AT1G13180 34.615 416 212 11 10 372 9 417 7.01e-72 231
MS.gene52664.t1 AT3G60830 37.731 379 212 9 7 377 1 363 1.19e-67 218
MS.gene52664.t1 AT3G33520 30.166 421 236 7 10 377 5 420 6.97e-59 197
MS.gene52664.t1 AT5G56180 30.986 284 171 9 91 358 50 324 2.21e-34 130
MS.gene52664.t1 AT5G56180 30.986 284 171 9 91 358 182 456 1.20e-33 130
MS.gene52664.t1 AT3G12380 31.395 258 152 9 9 245 21 274 8.24e-26 109
MS.gene52664.t1 AT3G12380 33.103 145 93 2 228 368 572 716 3.20e-16 80.9
MS.gene52664.t1 AT3G12380 31.250 256 149 9 9 245 21 268 3.66e-25 107
MS.gene52664.t1 AT3G12380 33.103 145 93 2 228 368 566 710 3.22e-16 80.9
MS.gene52664.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.58e-23 95.1
MS.gene52664.t1 AT1G73910 35.862 145 74 3 1 129 1 142 2.58e-23 95.1
MS.gene52664.t1 AT5G56180 32.292 192 110 7 91 271 182 364 8.79e-19 87.4
MS.gene52664.t1 AT1G73910 29.268 123 71 2 1 107 1 123 3.24e-12 64.7

Find 97 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATGGGATTGTTAGTAAT+TGG 0.164954 7.2:+16117375 MS.gene52664:CDS
CTGGATTGGAGGTTCCATTT+TGG 0.195803 7.2:+16118848 MS.gene52664:CDS
GACGGCTGGAACAAAACTTC+TGG 0.283900 7.2:-16118603 None:intergenic
TGTTAGTAATTGGGATGATA+TGG 0.286824 7.2:+16117385 MS.gene52664:CDS
AGAAGAACAGGGTGTTCTTC+AGG 0.300324 7.2:-16117452 None:intergenic
GAGGGATATGAAGGAGAAAT+TGG 0.306130 7.2:+16118458 MS.gene52664:CDS
CATTTCCTGTGTACTATTGA+TGG 0.320989 7.2:-16119100 None:intergenic
CTAACAATCCCATGCTCAAT+TGG 0.332451 7.2:-16117368 None:intergenic
AGTGCATATCCCTCGTAAAT+AGG 0.333417 7.2:-16118321 None:intergenic
GGTGCTTCAGTGAGAAGAAC+AGG 0.346523 7.2:-16117464 None:intergenic
AAGGCAGAATATGATGAATC+TGG 0.369605 7.2:+16119076 MS.gene52664:CDS
ATCCTTCGTCTGGATCTTGC+AGG 0.384447 7.2:+16118354 MS.gene52664:CDS
CGATTAGCCTTAGGATTAAG+AGG 0.392490 7.2:-16117485 None:intergenic
AGTGCTGAGAGATGCCAAAA+TGG 0.400190 7.2:-16118862 None:intergenic
ATCTCTCAGCACTTTCCAAC+AGG 0.421981 7.2:+16118872 MS.gene52664:CDS
TGAAGTGTGATGTCGACATT+AGG 0.428549 7.2:+16118679 MS.gene52664:CDS
GGTTCCGTTGTCGCAAACTA+AGG 0.435984 7.2:-16116966 None:intergenic
TCCACATGCAATCCTTCGTC+TGG 0.436749 7.2:+16118344 MS.gene52664:CDS
TGTTCCAGCCGTCCATGATC+GGG 0.440481 7.2:+16118613 MS.gene52664:CDS
TTGTTCCAGCCGTCCATGAT+CGG 0.442160 7.2:+16118612 MS.gene52664:CDS
TATGCGAGTGGTCGTACAAC+TGG 0.443707 7.2:+16117587 MS.gene52664:CDS
GCAGTATTCCCTAGCATAGT+AGG 0.445310 7.2:+16117245 MS.gene52664:CDS
GCATGGGATTGTTAGTAATT+GGG 0.447989 7.2:+16117376 MS.gene52664:CDS
CGGAGAGGAAGTACAGTGTC+TGG 0.462356 7.2:+16118829 MS.gene52664:CDS
CTCATCCTATCAGCAATACC+AGG 0.462364 7.2:-16118750 None:intergenic
AGGAGATTCCATCCCGATCA+TGG 0.463558 7.2:-16118625 None:intergenic
ACGGCTGGAACAAAACTTCT+GGG 0.468624 7.2:-16118602 None:intergenic
TTAGTTTGCGACAACGGAAC+CGG 0.471674 7.2:+16116968 MS.gene52664:CDS
TATTGCTCTTGATTATGAGC+AGG 0.475672 7.2:+16118485 MS.gene52664:CDS
GGGATGATATGGAGAAGATC+TGG 0.484705 7.2:+16117396 MS.gene52664:CDS
GACATTAGGAAGGATCTCTA+TGG 0.488078 7.2:+16118693 MS.gene52664:CDS
CACAGGGGTAATGGTTGGAA+TGG 0.495803 7.2:+16117280 MS.gene52664:CDS
AATTTCTCGCTCTGCTGAAG+TGG 0.496387 7.2:-16118433 None:intergenic
TAACAATCCCATGCTCAATT+GGG 0.497649 7.2:-16117367 None:intergenic
ATCGTGATTACCTGTCCATC+AGG 0.500077 7.2:-16118558 None:intergenic
AGAAATTGTGAGGGATATGA+AGG 0.501249 7.2:+16118449 MS.gene52664:CDS
AAGTACAGTGTCTGGATTGG+AGG 0.501277 7.2:+16118837 MS.gene52664:CDS
TGTTCCCTGGTATTGCTGAT+AGG 0.501884 7.2:+16118745 MS.gene52664:CDS
CTGTCCATCAGGTAGCTCAT+AGG 0.503008 7.2:-16118547 None:intergenic
TCCACGTCACACAGGGGTAA+TGG 0.512712 7.2:+16117271 MS.gene52664:CDS
CGTGGACGTCCTACTATGCT+AGG 0.514609 7.2:-16117254 None:intergenic
AGGAAGTACAGTGTCTGGAT+TGG 0.515386 7.2:+16118834 MS.gene52664:CDS
ACAGGGGTAATGGTTGGAAT+GGG 0.516861 7.2:+16117281 MS.gene52664:CDS
CCATCCCGATCATGGACGGC+TGG 0.529203 7.2:-16118617 None:intergenic
TTGAAATACCCAATTGAGCA+TGG 0.529351 7.2:+16117359 MS.gene52664:CDS
GTGCTTTCACTTTATGCGAG+TGG 0.546070 7.2:+16117575 MS.gene52664:CDS
TGCAGGAGATGATGCACCAA+GGG 0.547290 7.2:+16117223 MS.gene52664:CDS
GAGCAAGGAGATTACAGCAT+TGG 0.550032 7.2:+16118770 MS.gene52664:CDS
TCGAGTTAAATGTTGTCTCA+TGG 0.551870 7.2:-16118653 None:intergenic
CTATGAGCTACCTGATGGAC+AGG 0.554582 7.2:+16118548 MS.gene52664:CDS
CAGCCCTTAGTTTGCGACAA+CGG 0.557180 7.2:+16116962 MS.gene52664:CDS
TGAATAGCAACATACATAGC+AGG 0.559953 7.2:-16117548 None:intergenic
GGAACAAAACTTCTGGGCAT+CGG 0.561285 7.2:-16118596 None:intergenic
AGGCAGAATATGATGAATCT+GGG 0.564408 7.2:+16119077 MS.gene52664:CDS
TGAAGCACCTCTTAATCCTA+AGG 0.566737 7.2:+16117478 MS.gene52664:CDS
CAACGGAACCGGCATGGTCA+AGG 0.570249 7.2:+16116979 MS.gene52664:CDS
AATGTTGTCTCATGGATACC+AGG 0.572742 7.2:-16118645 None:intergenic
ACCTAGTAGCATGAAAATCA+AGG 0.573048 7.2:+16118794 MS.gene52664:CDS
CAGACACTGTACTTCCTCTC+CGG 0.574467 7.2:-16118828 None:intergenic
GGTGAAAGTGTAGCCACGCT+CGG 0.575757 7.2:-16118412 None:intergenic
TGAAATACCCAATTGAGCAT+GGG 0.576183 7.2:+16117360 MS.gene52664:CDS
ATGCTAGGGAATACTGCCCT+TGG 0.578562 7.2:-16117239 None:intergenic
ACCATTACCCCTGTGTGACG+TGG 0.580899 7.2:-16117272 None:intergenic
GGTGGTTCAACAATGTTCCC+TGG 0.583355 7.2:+16118732 MS.gene52664:CDS
CGTCACACAGGGGTAATGGT+TGG 0.583763 7.2:+16117275 MS.gene52664:CDS
GTTCCGTTGTCGCAAACTAA+GGG 0.584635 7.2:-16116965 None:intergenic
AATCAAGGTTGTAGCACCAC+CGG 0.585546 7.2:+16118809 MS.gene52664:CDS
TATGGTAACATTGTGTTGAG+TGG 0.586496 7.2:+16118711 MS.gene52664:CDS
GATTGATACCTTGACCATGC+CGG 0.591606 7.2:-16116987 None:intergenic
GGTAACATTGTGTTGAGTGG+TGG 0.592071 7.2:+16118714 MS.gene52664:CDS
ATGATCGGGATGGAATCTCC+TGG 0.596212 7.2:+16118627 MS.gene52664:CDS
TAGGACGTCCACGTCACACA+GGG 0.610133 7.2:+16117264 MS.gene52664:CDS
GATTCCATCCCGATCATGGA+CGG 0.611630 7.2:-16118621 None:intergenic
AAGACCTATGAGCTACCTGA+TGG 0.618966 7.2:+16118543 MS.gene52664:CDS
CAGCAGAGCGAGAAATTGTG+AGG 0.625485 7.2:+16118439 MS.gene52664:CDS
GTGTGATGTCGACATTAGGA+AGG 0.626175 7.2:+16118683 MS.gene52664:CDS
TTGCGACAACGGAACCGGCA+TGG 0.628011 7.2:+16116973 MS.gene52664:CDS
TGGGGATGGTGTTAGTCACA+CGG 0.632223 7.2:+16118296 MS.gene52664:CDS
GTGGACGTCCTACTATGCTA+GGG 0.634198 7.2:-16117253 None:intergenic
CCAGCCGTCCATGATCGGGA+TGG 0.642703 7.2:+16118617 MS.gene52664:CDS
GATGGACAGGTAATCACGAT+CGG 0.642938 7.2:+16118561 MS.gene52664:CDS
TCCAGACGAAGGATTGCATG+TGG 0.643395 7.2:-16118345 None:intergenic
TATTGCTGATAGGATGAGCA+AGG 0.645350 7.2:+16118755 MS.gene52664:CDS
CTGGGCCATCAATAGTACAC+AGG 0.648814 7.2:+16119095 MS.gene52664:CDS
GTAGGACGTCCACGTCACAC+AGG 0.654094 7.2:+16117263 MS.gene52664:CDS
TGTGCAGATGTGGATTGCAA+AGG 0.658163 7.2:+16119057 MS.gene52664:intron
GATGAAGCACAATCAAAGAG+AGG 0.658995 7.2:+16117326 MS.gene52664:CDS
CACACGGTTCCTATTTACGA+GGG 0.661422 7.2:+16118312 MS.gene52664:CDS
ACACTGTACTTCCTCTCCGG+TGG 0.663345 7.2:-16118825 None:intergenic
TTGCAGGAGATGATGCACCA+AGG 0.664250 7.2:+16117222 MS.gene52664:CDS
AGCAGAGCGAGAAATTGTGA+GGG 0.666151 7.2:+16118440 MS.gene52664:CDS
TCACACGGTTCCTATTTACG+AGG 0.670052 7.2:+16118311 MS.gene52664:CDS
GTGCTTCAGTGAGAAGAACA+GGG 0.670285 7.2:-16117463 None:intergenic
AGGTTGTAGCACCACCGGAG+AGG 0.672795 7.2:+16118814 MS.gene52664:CDS
TCATCCTATCAGCAATACCA+GGG 0.706641 7.2:-16118749 None:intergenic
GACCTGCAAGATCCAGACGA+AGG 0.709052 7.2:-16118356 None:intergenic
AGGACGTCCACGTCACACAG+GGG 0.764581 7.2:+16117265 MS.gene52664:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTAATTTTTTTTTAC+AGG - chr7.2:16117824-16117843 None:intergenic 10.0%
!!! AAATCTAATTTTTTTTTACA+GGG - chr7.2:16117823-16117842 None:intergenic 10.0%
!!! TGTAAAAAAAAAATAGTTTT+TGG - chr7.2:16118012-16118031 None:intergenic 10.0%
!!! TGTAAAAAAAAATTAGATTT+TGG + chr7.2:16117823-16117842 MS.gene52664:intron 10.0%
!!! TTATTTTTTCAAGTTATTAT+CGG + chr7.2:16117115-16117134 MS.gene52664:intron 10.0%
!! AAAAAACAAAAAAATTTGCA+GGG - chr7.2:16117850-16117869 None:intergenic 15.0%
!! ATAATTTAAAGGCTAAAATA+TGG + chr7.2:16117760-16117779 MS.gene52664:intron 15.0%
!! TAAAAAACAAAAAAATTTGC+AGG - chr7.2:16117851-16117870 None:intergenic 15.0%
!!! TTACTTCCATTTTTTAAATT+AGG - chr7.2:16118087-16118106 None:intergenic 15.0%
!!! TTTTAAATTAGGCTAAAATA+TGG - chr7.2:16118076-16118095 None:intergenic 15.0%
!!! TTTTAGCCTAATTTAAAAAA+TGG + chr7.2:16118078-16118097 MS.gene52664:intron 15.0%
!! GATAATTCAGTAAATAAATC+AGG + chr7.2:16118917-16118936 MS.gene52664:intron 20.0%
!!! CAAAATCAAAATATTTTGCA+GGG + chr7.2:16117896-16117915 MS.gene52664:intron 20.0%
!!! TCAAAATCAAAATATTTTGC+AGG + chr7.2:16117895-16117914 MS.gene52664:intron 20.0%
!!! TGAACATATTTTGTAGTTTT+TGG - chr7.2:16117923-16117942 None:intergenic 20.0%
!!! TTTAGCCTTTAAATTATTAC+CGG - chr7.2:16117757-16117776 None:intergenic 20.0%
!!! TTTTTAAAATAGTCCTTGAA+GGG + chr7.2:16117865-16117884 MS.gene52664:intron 20.0%
!!! TTTTTTAAAATAGTCCTTGA+AGG + chr7.2:16117864-16117883 MS.gene52664:intron 20.0%
! AAACACCGGTAATAATTTAA+AGG + chr7.2:16117749-16117768 MS.gene52664:intron 25.0%
! AATTTCATTTCAACAAGTAC+AGG + chr7.2:16118941-16118960 MS.gene52664:intron 25.0%
!!! AACTGTTTTTTGGTTGTTTT+AGG + chr7.2:16117193-16117212 MS.gene52664:intron 25.0%
!!! TCATGGATTTAACTGTTTTT+TGG + chr7.2:16117183-16117202 MS.gene52664:intron 25.0%
!!! TTTTCAAGTTATTATCGGTT+TGG + chr7.2:16117120-16117139 MS.gene52664:intron 25.0%
AAGTACAGGTTATGAAAAGT+AGG + chr7.2:16118955-16118974 MS.gene52664:intron 30.0%
AATCCATCAAATTTACCTGT+TGG - chr7.2:16118890-16118909 None:intergenic 30.0%
ATAACAAATGTGTTATACCG+AGG + chr7.2:16118983-16119002 MS.gene52664:intron 30.0%
ATAGGGAGAATTAAATGAGA+TGG - chr7.2:16117016-16117035 None:intergenic 30.0%
ATGCAAATCATCACAAAAGT+AGG + chr7.2:16117960-16117979 MS.gene52664:intron 30.0%
CAAAATGAGACATATTTGCA+GGG + chr7.2:16118043-16118062 MS.gene52664:intron 30.0%
GAATGTAATCACATATGTCT+TGG + chr7.2:16118117-16118136 MS.gene52664:intron 30.0%
TGCAAATCATCACAAAAGTA+GGG + chr7.2:16117961-16117980 MS.gene52664:intron 30.0%
TGTTAGTAATTGGGATGATA+TGG + chr7.2:16117385-16117404 MS.gene52664:CDS 30.0%
TTTCCAACAGGTAAATTTGA+TGG + chr7.2:16118884-16118903 MS.gene52664:intron 30.0%
! TGATTTACTGTGTTTTGTGT+AGG + chr7.2:16118258-16118277 MS.gene52664:intron 30.0%
!! GTTTTGTGTAGGTATTGTTT+TGG + chr7.2:16118269-16118288 MS.gene52664:intron 30.0%
!! TTTTGAAAATAGTCCCTTCA+AGG - chr7.2:16117881-16117900 None:intergenic 30.0%
!!! ATTTTTTCACGATTAGCCTT+AGG - chr7.2:16117497-16117516 None:intergenic 30.0%
!!! TAGGTATTGTTTTGGATTCT+GGG + chr7.2:16118277-16118296 MS.gene52664:intron 30.0%
AAGGCAGAATATGATGAATC+TGG + chr7.2:16119076-16119095 MS.gene52664:CDS 35.0%
AATCATCACAAAAGTAGGGT+CGG + chr7.2:16117965-16117984 MS.gene52664:intron 35.0%
ACCTAGTAGCATGAAAATCA+AGG + chr7.2:16118794-16118813 MS.gene52664:CDS 35.0%
AGAAATTGTGAGGGATATGA+AGG + chr7.2:16118449-16118468 MS.gene52664:CDS 35.0%
AGCATGGGATTGTTAGTAAT+TGG + chr7.2:16117375-16117394 MS.gene52664:CDS 35.0%
AGGCAGAATATGATGAATCT+GGG + chr7.2:16119077-16119096 MS.gene52664:CDS 35.0%
CAAGATTGAAGGATAAACAC+CGG + chr7.2:16117735-16117754 MS.gene52664:intron 35.0%
CATTTCCTGTGTACTATTGA+TGG - chr7.2:16119103-16119122 None:intergenic 35.0%
CCAAAATGAGACATATTTGC+AGG + chr7.2:16118042-16118061 MS.gene52664:intron 35.0%
GCATGGGATTGTTAGTAATT+GGG + chr7.2:16117376-16117395 MS.gene52664:CDS 35.0%
GGACAAAAAGATGCATATGT+TGG + chr7.2:16117302-16117321 MS.gene52664:CDS 35.0%
GTGTCTGTATCTCTATTTCA+TGG + chr7.2:16117166-16117185 MS.gene52664:intron 35.0%
TAACAATCCCATGCTCAATT+GGG - chr7.2:16117370-16117389 None:intergenic 35.0%
TACAGGTTATGAAAAGTAGG+AGG + chr7.2:16118958-16118977 MS.gene52664:intron 35.0%
TATGGTAACATTGTGTTGAG+TGG + chr7.2:16118711-16118730 MS.gene52664:CDS 35.0%
TATTGCTCTTGATTATGAGC+AGG + chr7.2:16118485-16118504 MS.gene52664:CDS 35.0%
TCGAGTTAAATGTTGTCTCA+TGG - chr7.2:16118656-16118675 None:intergenic 35.0%
TGAAATACCCAATTGAGCAT+GGG + chr7.2:16117360-16117379 MS.gene52664:CDS 35.0%
TGAATAGCAACATACATAGC+AGG - chr7.2:16117551-16117570 None:intergenic 35.0%
TGTAATCACATATGTCTTGG+TGG + chr7.2:16118120-16118139 MS.gene52664:intron 35.0%
TTGAAATACCCAATTGAGCA+TGG + chr7.2:16117359-16117378 MS.gene52664:CDS 35.0%
TTTGCATACGTGACATATGA+TGG - chr7.2:16117947-16117966 None:intergenic 35.0%
! ACCTTGATTTTCATGCTACT+AGG - chr7.2:16118798-16118817 None:intergenic 35.0%
! CCTGCAAATATGTCTCATTT+TGG - chr7.2:16118045-16118064 None:intergenic 35.0%
!!! AGGTATTGTTTTGGATTCTG+GGG + chr7.2:16118278-16118297 MS.gene52664:intron 35.0%
!!! GTAGGTATTGTTTTGGATTC+TGG + chr7.2:16118276-16118295 MS.gene52664:intron 35.0%
!!! GTTTTTTGGTTGTTTTAGGC+TGG + chr7.2:16117197-16117216 MS.gene52664:intron 35.0%
!!! TACTTTTTCTTGTGCAGATG+TGG + chr7.2:16119047-16119066 MS.gene52664:intron 35.0%
AATGTTGTCTCATGGATACC+AGG - chr7.2:16118648-16118667 None:intergenic 40.0%
AGTGCATATCCCTCGTAAAT+AGG - chr7.2:16118324-16118343 None:intergenic 40.0%
CAAATGACACAACTAAGCCT+CGG - chr7.2:16119003-16119022 None:intergenic 40.0%
CCAAAACGAGACATATTTGC+AGG - chr7.2:16117793-16117812 None:intergenic 40.0%
CGGTGTTTATCCTTCAATCT+TGG - chr7.2:16117737-16117756 None:intergenic 40.0%
CTAACAATCCCATGCTCAAT+TGG - chr7.2:16117371-16117390 None:intergenic 40.0%
GACATTAGGAAGGATCTCTA+TGG + chr7.2:16118693-16118712 MS.gene52664:CDS 40.0%
GAGGGATATGAAGGAGAAAT+TGG + chr7.2:16118458-16118477 MS.gene52664:CDS 40.0%
GATGAAGCACAATCAAAGAG+AGG + chr7.2:16117326-16117345 MS.gene52664:CDS 40.0%
TATTGCTGATAGGATGAGCA+AGG + chr7.2:16118755-16118774 MS.gene52664:CDS 40.0%
TCATCCTATCAGCAATACCA+GGG - chr7.2:16118752-16118771 None:intergenic 40.0%
TGAAGTGTGATGTCGACATT+AGG + chr7.2:16118679-16118698 MS.gene52664:CDS 40.0%
! CCTGCAAATATGTCTCGTTT+TGG + chr7.2:16117790-16117809 MS.gene52664:intron 40.0%
! TGAAGCACCTCTTAATCCTA+AGG + chr7.2:16117478-16117497 MS.gene52664:CDS 40.0%
! TTCATGTAGCATCGAAACGT+TGG - chr7.2:16118167-16118186 None:intergenic 40.0%
!! ATGAAGATTTTAACCGAGCG+TGG + chr7.2:16118399-16118418 MS.gene52664:CDS 40.0%
!! CGATTAGCCTTAGGATTAAG+AGG - chr7.2:16117488-16117507 None:intergenic 40.0%
!! GAGCTTTTGATCAGAAGTGT+TGG - chr7.2:16117041-16117060 None:intergenic 40.0%
!! GATCAGAAGTGTTGGTGATA+GGG - chr7.2:16117033-16117052 None:intergenic 40.0%
!! TGATCAGAAGTGTTGGTGAT+AGG - chr7.2:16117034-16117053 None:intergenic 40.0%
!!! ATTGTTTTGGATTCTGGGGA+TGG + chr7.2:16118282-16118301 MS.gene52664:CDS 40.0%
!!! TTGTTTTAGGCTGGTTTTGC+AGG + chr7.2:16117206-16117225 MS.gene52664:intron 40.0%
AAGACCTATGAGCTACCTGA+TGG + chr7.2:16118543-16118562 MS.gene52664:CDS 45.0%
AATAGAGATACAGACACCGC+CGG - chr7.2:16117163-16117182 None:intergenic 45.0%
AATCAAGGTTGTAGCACCAC+CGG + chr7.2:16118809-16118828 MS.gene52664:CDS 45.0%
AATTTCTCGCTCTGCTGAAG+TGG - chr7.2:16118436-16118455 None:intergenic 45.0%
ACACACGACACCAAGATTGA+AGG + chr7.2:16117724-16117743 MS.gene52664:intron 45.0%
ACGGCTGGAACAAAACTTCT+GGG - chr7.2:16118605-16118624 None:intergenic 45.0%
AGCAGAGCGAGAAATTGTGA+GGG + chr7.2:16118440-16118459 MS.gene52664:CDS 45.0%
ATCGTGATTACCTGTCCATC+AGG - chr7.2:16118561-16118580 None:intergenic 45.0%
ATCTCTCAGCACTTTCCAAC+AGG + chr7.2:16118872-16118891 MS.gene52664:CDS 45.0%
CACACGGTTCCTATTTACGA+GGG + chr7.2:16118312-16118331 MS.gene52664:CDS 45.0%
CTCATCCTATCAGCAATACC+AGG - chr7.2:16118753-16118772 None:intergenic 45.0%
GAGCAAGGAGATTACAGCAT+TGG + chr7.2:16118770-16118789 MS.gene52664:CDS 45.0%
GATGGACAGGTAATCACGAT+CGG + chr7.2:16118561-16118580 MS.gene52664:CDS 45.0%
GATTGATACCTTGACCATGC+CGG - chr7.2:16116990-16117009 None:intergenic 45.0%
GCAGTATTCCCTAGCATAGT+AGG + chr7.2:16117245-16117264 MS.gene52664:CDS 45.0%
GGAACAAAACTTCTGGGCAT+CGG - chr7.2:16118599-16118618 None:intergenic 45.0%
GGGATGATATGGAGAAGATC+TGG + chr7.2:16117396-16117415 MS.gene52664:CDS 45.0%
GGTAACATTGTGTTGAGTGG+TGG + chr7.2:16118714-16118733 MS.gene52664:CDS 45.0%
GTGCTTCAGTGAGAAGAACA+GGG - chr7.2:16117466-16117485 None:intergenic 45.0%
GTGCTTTCACTTTATGCGAG+TGG + chr7.2:16117575-16117594 MS.gene52664:CDS 45.0%
GTGTGATGTCGACATTAGGA+AGG + chr7.2:16118683-16118702 MS.gene52664:CDS 45.0%
GTTCCGTTGTCGCAAACTAA+GGG - chr7.2:16116968-16116987 None:intergenic 45.0%
TCACACGGTTCCTATTTACG+AGG + chr7.2:16118311-16118330 MS.gene52664:CDS 45.0%
TGTTCCCTGGTATTGCTGAT+AGG + chr7.2:16118745-16118764 MS.gene52664:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+AGG + chr7.2:16118837-16118856 MS.gene52664:CDS 45.0%
! ACAGGGGTAATGGTTGGAAT+GGG + chr7.2:16117281-16117300 MS.gene52664:CDS 45.0%
! AGAAGAACAGGGTGTTCTTC+AGG - chr7.2:16117455-16117474 None:intergenic 45.0%
! AGGAAGTACAGTGTCTGGAT+TGG + chr7.2:16118834-16118853 MS.gene52664:CDS 45.0%
! AGTGCTGAGAGATGCCAAAA+TGG - chr7.2:16118865-16118884 None:intergenic 45.0%
! GCCATGTGATGATGCAAACT+AGG + chr7.2:16118211-16118230 MS.gene52664:intron 45.0%
! GCCTAGTTTGCATCATCACA+TGG - chr7.2:16118215-16118234 None:intergenic 45.0%
! TGTGCAGATGTGGATTGCAA+AGG + chr7.2:16119057-16119076 MS.gene52664:intron 45.0%
!! CTGGATTGGAGGTTCCATTT+TGG + chr7.2:16118848-16118867 MS.gene52664:CDS 45.0%
!! TTAGTTTGCGACAACGGAAC+CGG + chr7.2:16116968-16116987 MS.gene52664:CDS 45.0%
AGGAGATTCCATCCCGATCA+TGG - chr7.2:16118628-16118647 None:intergenic 50.0%
ATCCTTCGTCTGGATCTTGC+AGG + chr7.2:16118354-16118373 MS.gene52664:CDS 50.0%
ATGATCGGGATGGAATCTCC+TGG + chr7.2:16118627-16118646 MS.gene52664:CDS 50.0%
ATGCTAGGGAATACTGCCCT+TGG - chr7.2:16117242-16117261 None:intergenic 50.0%
CAGACACTGTACTTCCTCTC+CGG - chr7.2:16118831-16118850 None:intergenic 50.0%
CAGCAGAGCGAGAAATTGTG+AGG + chr7.2:16118439-16118458 MS.gene52664:CDS 50.0%
CTGGGCCATCAATAGTACAC+AGG + chr7.2:16119095-16119114 MS.gene52664:CDS 50.0%
CTGTCCATCAGGTAGCTCAT+AGG - chr7.2:16118550-16118569 None:intergenic 50.0%
GACGGCTGGAACAAAACTTC+TGG - chr7.2:16118606-16118625 None:intergenic 50.0%
GATTCCATCCCGATCATGGA+CGG - chr7.2:16118624-16118643 None:intergenic 50.0%
GGATGTGTCAGTGTCGTATC+CGG + chr7.2:16117141-16117160 MS.gene52664:intron 50.0%
GGTGCTTCAGTGAGAAGAAC+AGG - chr7.2:16117467-16117486 None:intergenic 50.0%
GGTGGTTCAACAATGTTCCC+TGG + chr7.2:16118732-16118751 MS.gene52664:CDS 50.0%
GGTTCCGTTGTCGCAAACTA+AGG - chr7.2:16116969-16116988 None:intergenic 50.0%
GTGGACGTCCTACTATGCTA+GGG - chr7.2:16117256-16117275 None:intergenic 50.0%
TATGCGAGTGGTCGTACAAC+TGG + chr7.2:16117587-16117606 MS.gene52664:CDS 50.0%
TCCACATGCAATCCTTCGTC+TGG + chr7.2:16118344-16118363 MS.gene52664:CDS 50.0%
TCCAGACGAAGGATTGCATG+TGG - chr7.2:16118348-16118367 None:intergenic 50.0%
TGCAGGAGATGATGCACCAA+GGG + chr7.2:16117223-16117242 MS.gene52664:CDS 50.0%
TTGCAGGAGATGATGCACCA+AGG + chr7.2:16117222-16117241 MS.gene52664:CDS 50.0%
TTGTTCCAGCCGTCCATGAT+CGG + chr7.2:16118612-16118631 MS.gene52664:CDS 50.0%
! CACAGGGGTAATGGTTGGAA+TGG + chr7.2:16117280-16117299 MS.gene52664:CDS 50.0%
! CTATGAGCTACCTGATGGAC+AGG + chr7.2:16118548-16118567 MS.gene52664:CDS 50.0%
! GTGTCGACACAGATCAGTGT+CGG + chr7.2:16117061-16117080 MS.gene52664:intron 50.0%
! TGGGGATGGTGTTAGTCACA+CGG + chr7.2:16118296-16118315 MS.gene52664:CDS 50.0%
!! CAATCTTGGTGTCGTGTGTC+TGG - chr7.2:16117723-16117742 None:intergenic 50.0%
!! CAGCCCTTAGTTTGCGACAA+CGG + chr7.2:16116962-16116981 MS.gene52664:CDS 50.0%
ACACTGTACTTCCTCTCCGG+TGG - chr7.2:16118828-16118847 None:intergenic 55.0%
ACCATTACCCCTGTGTGACG+TGG - chr7.2:16117275-16117294 None:intergenic 55.0%
CGTGGACGTCCTACTATGCT+AGG - chr7.2:16117257-16117276 None:intergenic 55.0%
GACCTGCAAGATCCAGACGA+AGG - chr7.2:16118359-16118378 None:intergenic 55.0%
TAGGACGTCCACGTCACACA+GGG + chr7.2:16117264-16117283 MS.gene52664:CDS 55.0%
TCCACGTCACACAGGGGTAA+TGG + chr7.2:16117271-16117290 MS.gene52664:CDS 55.0%
TGTGTCAGTGTCGTATCCGG+CGG + chr7.2:16117144-16117163 MS.gene52664:intron 55.0%
TGTTCCAGCCGTCCATGATC+GGG + chr7.2:16118613-16118632 MS.gene52664:CDS 55.0%
! CGGAGAGGAAGTACAGTGTC+TGG + chr7.2:16118829-16118848 MS.gene52664:CDS 55.0%
! CGTCACACAGGGGTAATGGT+TGG + chr7.2:16117275-16117294 MS.gene52664:CDS 55.0%
! GGTGAAAGTGTAGCCACGCT+CGG - chr7.2:16118415-16118434 None:intergenic 55.0%
AGGACGTCCACGTCACACAG+GGG + chr7.2:16117265-16117284 MS.gene52664:CDS 60.0%
AGGTTGTAGCACCACCGGAG+AGG + chr7.2:16118814-16118833 MS.gene52664:CDS 60.0%
CAACGGAACCGGCATGGTCA+AGG + chr7.2:16116979-16116998 MS.gene52664:CDS 60.0%
GTAGGACGTCCACGTCACAC+AGG + chr7.2:16117263-16117282 MS.gene52664:CDS 60.0%
TTGCGACAACGGAACCGGCA+TGG + chr7.2:16116973-16116992 MS.gene52664:CDS 60.0%
CCAGCCGTCCATGATCGGGA+TGG + chr7.2:16118617-16118636 MS.gene52664:CDS 65.0%
CCATCCCGATCATGGACGGC+TGG - chr7.2:16118620-16118639 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16116941 16119129 16116941 ID=MS.gene52664
chr7.2 mRNA 16116941 16119129 16116941 ID=MS.gene52664.t1;Parent=MS.gene52664
chr7.2 exon 16116941 16117000 16116941 ID=MS.gene52664.t1.exon1;Parent=MS.gene52664.t1
chr7.2 CDS 16116941 16117000 16116941 ID=cds.MS.gene52664.t1;Parent=MS.gene52664.t1
chr7.2 exon 16117215 16117608 16117215 ID=MS.gene52664.t1.exon2;Parent=MS.gene52664.t1
chr7.2 CDS 16117215 16117608 16117215 ID=cds.MS.gene52664.t1;Parent=MS.gene52664.t1
chr7.2 exon 16118280 16118893 16118280 ID=MS.gene52664.t1.exon3;Parent=MS.gene52664.t1
chr7.2 CDS 16118280 16118893 16118280 ID=cds.MS.gene52664.t1;Parent=MS.gene52664.t1
chr7.2 exon 16119064 16119129 16119064 ID=MS.gene52664.t1.exon4;Parent=MS.gene52664.t1
chr7.2 CDS 16119064 16119129 16119064 ID=cds.MS.gene52664.t1;Parent=MS.gene52664.t1
Gene Sequence

>MS.gene52664

ATGGCAGAATCAGAAGATATTCAGCCCTTAGTTTGCGACAACGGAACCGGCATGGTCAAGGTATCAATCAATCCATCTCATTTAATTCTCCCTATCACCAACACTTCTGATCAAAAGCTCGTGTCGACACAGATCAGTGTCGGACATCGACACATATGATTACATTGATTTATATTATTTTTTCAAGTTATTATCGGTTTGGATGTGTCAGTGTCGTATCCGGCGGTGTCTGTATCTCTATTTCATGGATTTAACTGTTTTTTGGTTGTTTTAGGCTGGTTTTGCAGGAGATGATGCACCAAGGGCAGTATTCCCTAGCATAGTAGGACGTCCACGTCACACAGGGGTAATGGTTGGAATGGGACAAAAAGATGCATATGTTGGTGATGAAGCACAATCAAAGAGAGGTATTTTGACATTGAAATACCCAATTGAGCATGGGATTGTTAGTAATTGGGATGATATGGAGAAGATCTGGCATCATACTTTCTACAATGAACTTCGTGTTGCTCCTGAAGAACACCCTGTTCTTCTCACTGAAGCACCTCTTAATCCTAAGGCTAATCGTGAAAAAATGACTCAGATCATGTTTGAGACATTCAATACTCCTGCTATGTATGTTGCTATTCAAGCTGTGCTTTCACTTTATGCGAGTGGTCGTACAACTGGTAAATTACTTCTTCTTTGATGTTGCATATATAAATTTTGTTCTATTCTAGTTTCGTAAATTGTAAATTTCATTTCATTCTGAGTTTTGTATGAATCACTACACACAGACACCAGACACACGACACCAAGATTGAAGGATAAACACCGGTAATAATTTAAAGGCTAAAATATGGTTTTAGTCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAAAAAAAATTAGATTTTGGTCCCTGCAAATTTTTTTGTTTTTTAAAATAGTCCTTGAAGGGACTATTTTCAAAATCAAAATATTTTGCAGGGACCAAAAACTACAAAATATGTTCAGCCATCATATGTCACGTATGCAAATCATCACAAAAGTAGGGTCGGAGACTATTTTCAAAAACAAAACCAAAAACTATTTTTTTTTTACAGAGACTAAAACCAAAATGAGACATATTTGCAGGGACTAAAACCATATTTTAGCCTAATTTAAAAAATGGAAGTAATTGAATCATTGAATGTAATCACATATGTCTTGGTGGTGTTAGATATTGACTTTCAATCCAACGTTTCGATGCTACATGAATGATGAATATGATTTGATAGAGTAGCCATGTGATGATGCAAACTAGGCATTGAGATTGAAATGAGTTGATGTGATTTACTGTGTTTTGTGTAGGTATTGTTTTGGATTCTGGGGATGGTGTTAGTCACACGGTTCCTATTTACGAGGGATATGCACTTCCACATGCAATCCTTCGTCTGGATCTTGCAGGTCGTGATCTCACTGATGCATTGATGAAGATTTTAACCGAGCGTGGCTACACTTTCACCACTTCAGCAGAGCGAGAAATTGTGAGGGATATGAAGGAGAAATTGGCTTATATTGCTCTTGATTATGAGCAGGAGTTAGAAACTGCAAAGACTAGCTCAGCTGTTGAGAAGACCTATGAGCTACCTGATGGACAGGTAATCACGATCGGTGCTGAAAGATTCCGATGCCCAGAAGTTTTGTTCCAGCCGTCCATGATCGGGATGGAATCTCCTGGTATCCATGAGACAACATTTAACTCGATCATGAAGTGTGATGTCGACATTAGGAAGGATCTCTATGGTAACATTGTGTTGAGTGGTGGTTCAACAATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAGATTACAGCATTGGCACCTAGTAGCATGAAAATCAAGGTTGTAGCACCACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTGGCATCTCTCAGCACTTTCCAACAGGTAAATTTGATGGATTTTGAAATGATAATTCAGTAAATAAATCAGGAAATTTCATTTCAACAAGTACAGGTTATGAAAAGTAGGAGGAAATAACAAATGTGTTATACCGAGGCTTAGTTGTGTCATTTGTAATGTGTTATTTTCTGATATGTTTACTTTTTCTTGTGCAGATGTGGATTGCAAAGGCAGAATATGATGAATCTGGGCCATCAATAGTACACAGGAAATGCTTCTAA

Protein sequence

>MS.gene52664.t1

MAESEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYTFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMESPGIHETTFNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF