Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44830.t1 | XP_013441801.1 | 100 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.90E-39 | 171.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44830.t1 | A0A072TF43 | 100.0 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.3e-39 | 171.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene44830 | 0.80723 | 5.59E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene44830 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene44830 | 0.81868 | 1.73E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene44830 | 0.809934 | 1.48E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene44830 | 0.804253 | 2.36E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene44830 | 0.800534 | 1.38E-48 | -1.69E-46 |
| MS.gene051700 | MS.gene44830 | 0.803343 | 3.65E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene44830 | 0.805205 | 1.49E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene44830 | 0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene44830 | 0.837357 | 5.45E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene44830 | 0.80867 | 2.76E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene44830 | 0.806482 | 8.05E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene44830 | 0.800891 | 1.17E-48 | -1.69E-46 |
| MS.gene053006 | MS.gene44830 | 0.829332 | 5.46E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene44830 | 0.808149 | 3.57E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene44830 | 0.808107 | 3.64E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene44830 | 0.814134 | 1.80E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene44830 | 0.810735 | 9.94E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene44830 | 0.807215 | 5.64E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene44830 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene44830 | 0.80197 | 7.00E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene44830 | 0.806718 | 7.18E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene44830 | 0.833413 | 5.41E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene44830 | 0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene44830 | 0.803988 | 2.68E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene44830 | 0.824489 | 7.85E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene44830 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene44830 | 0.820422 | 6.92E-53 | -1.69E-46 |
| MS.gene05979 | MS.gene44830 | 0.809465 | 1.87E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene44830 | 0.828672 | 7.89E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene44830 | 0.830843 | 2.34E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene44830 | 0.839492 | 1.53E-57 | -1.69E-46 |
| MS.gene060521 | MS.gene44830 | 0.843029 | 1.80E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene44830 | 0.802012 | 6.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44830.t1 | MTR_0512s0010 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 2.07e-60 | 179 |
| MS.gene44830.t1 | MTR_4g101060 | 80.822 | 73 | 14 | 0 | 1 | 73 | 1 | 73 | 1.09e-35 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44830.t1 | AT3G52040 | 67.470 | 83 | 25 | 1 | 1 | 81 | 1 | 83 | 8.13e-35 | 114 |
Find 14 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGAAAGTTACAAAGGATA+TGG | 0.347960 | 5.2:-58432184 | MS.gene44830:CDS |
| GAATCGATTTCTTCTTAGTT+TGG | 0.349646 | 5.2:+58432337 | None:intergenic |
| AATTTACCTTTGCGAGTTTG+AGG | 0.415610 | 5.2:+58432291 | None:intergenic |
| ATATCCTTTGTAACTTTCGT+TGG | 0.460250 | 5.2:+58432186 | None:intergenic |
| CTGCTTTAACTTCATTGCAA+TGG | 0.502414 | 5.2:+58428964 | None:intergenic |
| TCTGCACCACTTGCAGACTC+TGG | 0.505554 | 5.2:+58428891 | None:intergenic |
| ACTTTGCCATGACGATTAGC+AGG | 0.529511 | 5.2:+58432315 | None:intergenic |
| TCGATTCCTGCTAATCGTCA+TGG | 0.587351 | 5.2:-58432321 | MS.gene44830:CDS |
| AAAGTACCTCAAACTCGCAA+AGG | 0.619602 | 5.2:-58432297 | MS.gene44830:intron |
| GCGACTGTAGCTACAAAGGA+CGG | 0.622949 | 5.2:-58428942 | MS.gene44830:CDS |
| AGCAGCGACTGTAGCTACAA+AGG | 0.651640 | 5.2:-58428946 | MS.gene44830:CDS |
| ACAGCACCAGAGTCTGCAAG+TGG | 0.658489 | 5.2:-58428897 | MS.gene44830:CDS |
| GAAGCCAACGAAAGTTACAA+AGG | 0.673022 | 5.2:-58432190 | MS.gene44830:CDS |
| ACTGTAGCTACAAAGGACGG+TGG | 0.767361 | 5.2:-58428939 | MS.gene44830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTATCTAATTTGAAAT+TGG | - | chr5.2:58429751-58429770 | MS.gene44830:intron | 10.0% |
| !! | AAAATGAAAACAAACAATAT+TGG | - | chr5.2:58430708-58430727 | MS.gene44830:intron | 15.0% |
| !! | AACTTTATTCTCTTAAAATT+TGG | + | chr5.2:58430924-58430943 | None:intergenic | 15.0% |
| !! | AATACTAATTATAGAGAAAT+AGG | - | chr5.2:58429981-58430000 | MS.gene44830:intron | 15.0% |
| !! | AGAATAAAGAGTTAATTTAA+TGG | + | chr5.2:58430516-58430535 | None:intergenic | 15.0% |
| !! | TATATTAACAGTTTAAACAA+TGG | - | chr5.2:58429841-58429860 | MS.gene44830:intron | 15.0% |
| !!! | TATCATAACATTTTAAATTG+TGG | - | chr5.2:58430346-58430365 | MS.gene44830:intron | 15.0% |
| !!! | TTAATTTTCAGTTATGATTT+GGG | - | chr5.2:58429165-58429184 | MS.gene44830:intron | 15.0% |
| !!! | TTCTCTATAATTAGTATTTT+TGG | + | chr5.2:58429979-58429998 | None:intergenic | 15.0% |
| !!! | TTTAATTTTCAGTTATGATT+TGG | - | chr5.2:58429164-58429183 | MS.gene44830:intron | 15.0% |
| !!! | TTTAGTTAGTATTTTTTGTA+TGG | - | chr5.2:58431359-58431378 | MS.gene44830:intron | 15.0% |
| !!! | TTTATTCTCTTAAATTTTGT+TGG | - | chr5.2:58430528-58430547 | MS.gene44830:intron | 15.0% |
| !! | ACAACATTATATATTGTGAA+TGG | - | chr5.2:58430820-58430839 | MS.gene44830:intron | 20.0% |
| !! | CAACATTATATATTGTGAAT+GGG | - | chr5.2:58430821-58430840 | MS.gene44830:intron | 20.0% |
| !! | CTGTTAATATACATTATCAT+AGG | + | chr5.2:58429832-58429851 | None:intergenic | 20.0% |
| !! | TTGTTTAAACAATGTTTACT+AGG | - | chr5.2:58431770-58431789 | MS.gene44830:intron | 20.0% |
| !!! | AATTGTAAACTTTTCTTTAC+AGG | - | chr5.2:58429025-58429044 | MS.gene44830:intron | 20.0% |
| !!! | ACTCTATTGTTTTATTATCT+AGG | + | chr5.2:58431124-58431143 | None:intergenic | 20.0% |
| !!! | ATATTGACTTAACTCTTTTT+TGG | - | chr5.2:58429874-58429893 | MS.gene44830:intron | 20.0% |
| !!! | ATTGTAAACTTTTCTTTACA+GGG | - | chr5.2:58429026-58429045 | MS.gene44830:intron | 20.0% |
| !!! | ATTGTGTAAATGATTTTTCA+CGG | + | chr5.2:58430181-58430200 | None:intergenic | 20.0% |
| !!! | CTAATTTGAAATTGGTTTTT+GGG | - | chr5.2:58429759-58429778 | MS.gene44830:intron | 20.0% |
| !!! | TAAATTTTGTTGGATATACA+AGG | - | chr5.2:58430538-58430557 | MS.gene44830:intron | 20.0% |
| !!! | TATGAAGTATGAACTTTTTA+AGG | + | chr5.2:58430493-58430512 | None:intergenic | 20.0% |
| !!! | TATTGACTTAACTCTTTTTT+GGG | - | chr5.2:58429875-58429894 | MS.gene44830:intron | 20.0% |
| !!! | TCTAATTTGAAATTGGTTTT+TGG | - | chr5.2:58429758-58429777 | MS.gene44830:intron | 20.0% |
| !!! | TTGAATCTTTTTTAATCAAG+TGG | + | chr5.2:58430222-58430241 | None:intergenic | 20.0% |
| !!! | TTTCATAAGGTTTTAAATCA+CGG | + | chr5.2:58431052-58431071 | None:intergenic | 20.0% |
| ! | AAAATAGTTGTACAATGCTT+AGG | + | chr5.2:58432015-58432034 | None:intergenic | 25.0% |
| ! | AAAGCTAAGAAATGTGTTTA+TGG | - | chr5.2:58430304-58430323 | MS.gene44830:intron | 25.0% |
| ! | ACAAGGACTACATAAAATTT+AGG | + | chr5.2:58432086-58432105 | None:intergenic | 25.0% |
| ! | AGAATAAAGTTTCAATCCAA+TGG | - | chr5.2:58430933-58430952 | MS.gene44830:intron | 25.0% |
| ! | CAAAGTAAAACAAGAAAGTA+TGG | - | chr5.2:58429510-58429529 | MS.gene44830:intron | 25.0% |
| ! | GAAAATTAGAGAAAAGCAAA+AGG | + | chr5.2:58429110-58429129 | None:intergenic | 25.0% |
| ! | GATTAAAAAAGATTCAAGCA+AGG | - | chr5.2:58430225-58430244 | MS.gene44830:intron | 25.0% |
| ! | TAGGTTCATTGAATAATATC+TGG | - | chr5.2:58431934-58431953 | MS.gene44830:intron | 25.0% |
| ! | TATCTTATAGGACTTGATTA+GGG | + | chr5.2:58429454-58429473 | None:intergenic | 25.0% |
| ! | TTATCTTATAGGACTTGATT+AGG | + | chr5.2:58429455-58429474 | None:intergenic | 25.0% |
| ! | TTATGCTAGTAAATAACCTT+AGG | - | chr5.2:58431609-58431628 | MS.gene44830:intron | 25.0% |
| ! | TTGATAAGCACTTATCTTAT+AGG | + | chr5.2:58429466-58429485 | None:intergenic | 25.0% |
| !! | AAGCTATAAACTGTTTTCAT+CGG | - | chr5.2:58429550-58429569 | MS.gene44830:intron | 25.0% |
| !! | ATCATCAACATGTTTTCATA+AGG | + | chr5.2:58432043-58432062 | None:intergenic | 25.0% |
| !! | CAGAAATCAAAACTTTTCAA+GGG | - | chr5.2:58428890-58428909 | MS.gene44830:CDS | 25.0% |
| !! | TAAATTTTATGTAGTCCTTG+TGG | - | chr5.2:58432085-58432104 | MS.gene44830:intron | 25.0% |
| !! | TTTTTAACACTTCATACCAT+TGG | + | chr5.2:58430952-58430971 | None:intergenic | 25.0% |
| !!! | AATTTGTAGTGTGTTTTTTG+TGG | - | chr5.2:58429136-58429155 | MS.gene44830:intron | 25.0% |
| !!! | ATTGACTTAACTCTTTTTTG+GGG | - | chr5.2:58429876-58429895 | MS.gene44830:intron | 25.0% |
| !!! | CATACTTTCTTGTTTTACTT+TGG | + | chr5.2:58429512-58429531 | None:intergenic | 25.0% |
| !!! | TCTATTTTGCAGTTGTTTTT+TGG | - | chr5.2:58431700-58431719 | MS.gene44830:intron | 25.0% |
| !!! | TGGCTTTACTCTTTTTTTTT+GGG | - | chr5.2:58431858-58431877 | MS.gene44830:intron | 25.0% |
| !!! | TTGGCTTTACTCTTTTTTTT+TGG | - | chr5.2:58431857-58431876 | MS.gene44830:intron | 25.0% |
| !!! | TTTTTTTTGGGCTTATCTTA+TGG | - | chr5.2:58431870-58431889 | MS.gene44830:intron | 25.0% |
| AACAGTTTAAACAATGGTTG+AGG | - | chr5.2:58429847-58429866 | MS.gene44830:intron | 30.0% | |
| AACGAAAGTTACAAAGGATA+TGG | - | chr5.2:58429066-58429085 | MS.gene44830:intron | 30.0% | |
| ACGGGTATACAAATTTCATA+AGG | + | chr5.2:58431065-58431084 | None:intergenic | 30.0% | |
| ATATCCTTTGTAACTTTCGT+TGG | + | chr5.2:58429067-58429086 | None:intergenic | 30.0% | |
| CCTTGAAATTTAGTAACACA+TGG | - | chr5.2:58431329-58431348 | MS.gene44830:intron | 30.0% | |
| GCTCATGAATAATTTACCTA+AGG | + | chr5.2:58429689-58429708 | None:intergenic | 30.0% | |
| GTTCTATGAATCTCAGAATT+TGG | + | chr5.2:58430026-58430045 | None:intergenic | 30.0% | |
| TGCTTATAATAGTGACCAAA+GGG | - | chr5.2:58431982-58432001 | MS.gene44830:intron | 30.0% | |
| TTATGGCAGTAAATAACCTT+AGG | - | chr5.2:58429670-58429689 | MS.gene44830:intron | 30.0% | |
| TTGCTTATAATAGTGACCAA+AGG | - | chr5.2:58431981-58432000 | MS.gene44830:intron | 30.0% | |
| TTTCATAAGCTCAATCCAAA+CGG | + | chr5.2:58429254-58429273 | None:intergenic | 30.0% | |
| ! | AAAGTATTCATGTTTCTGCT+TGG | - | chr5.2:58429211-58429230 | MS.gene44830:intron | 30.0% |
| ! | AATGTGTTTATGGACTGTTA+CGG | - | chr5.2:58430314-58430333 | MS.gene44830:intron | 30.0% |
| ! | ACAGTTTTCATAGGCTATTT+TGG | - | chr5.2:58431509-58431528 | MS.gene44830:intron | 30.0% |
| ! | ATTAGCAAAACACGCATTTT+AGG | - | chr5.2:58431915-58431934 | MS.gene44830:intron | 30.0% |
| ! | CCATGTGTTACTAAATTTCA+AGG | + | chr5.2:58431332-58431351 | None:intergenic | 30.0% |
| ! | GAATCGATTTCTTCTTAGTT+TGG | + | chr5.2:58428916-58428935 | None:intergenic | 30.0% |
| ! | GAGCTATAAACAGTTTTCAT+AGG | - | chr5.2:58431500-58431519 | MS.gene44830:intron | 30.0% |
| ! | GCAGAAATCAAAACTTTTCA+AGG | - | chr5.2:58428889-58428908 | MS.gene44830:CDS | 30.0% |
| ! | GTGTTACTAAATTTCAAGGT+TGG | + | chr5.2:58431328-58431347 | None:intergenic | 30.0% |
| ! | GTTTTGCTAATAATAGTGAC+CGG | + | chr5.2:58431906-58431925 | None:intergenic | 30.0% |
| ! | TACTAAATTTCAAGGTTGGT+AGG | + | chr5.2:58431324-58431343 | None:intergenic | 30.0% |
| ! | TATTTCTAAAAGCTACCACA+AGG | + | chr5.2:58432103-58432122 | None:intergenic | 30.0% |
| ! | TCATATGCAGTGTTTTGTAT+TGG | - | chr5.2:58431838-58431857 | MS.gene44830:intron | 30.0% |
| ! | TGGTCATGATATTTGATGAT+TGG | - | chr5.2:58430366-58430385 | MS.gene44830:intron | 30.0% |
| !! | ACTAAATTTCAAGGTTGGTA+GGG | + | chr5.2:58431323-58431342 | None:intergenic | 30.0% |
| !! | TGTGGTAGCTTTTAGAAATA+AGG | - | chr5.2:58432103-58432122 | MS.gene44830:intron | 30.0% |
| !! | TTCAGTTATGATTTGGGTTT+TGG | - | chr5.2:58429171-58429190 | MS.gene44830:intron | 30.0% |
| !!! | AAGATTTTTCAAGCAAGAAG+CGG | + | chr5.2:58431167-58431186 | None:intergenic | 30.0% |
| AAAGCTGATAGATGTGTGTA+TGG | + | chr5.2:58431094-58431113 | None:intergenic | 35.0% | |
| AAGACACTAGCAAGAGTTTA+TGG | - | chr5.2:58429653-58429672 | MS.gene44830:intron | 35.0% | |
| AAGCTCTTTCAAACACTGAA+GGG | - | chr5.2:58431585-58431604 | MS.gene44830:intron | 35.0% | |
| AATCAAGTGGTTGCCAAAAA+GGG | + | chr5.2:58430209-58430228 | None:intergenic | 35.0% | |
| AATTTACCTTTGCGAGTTTG+AGG | + | chr5.2:58428962-58428981 | None:intergenic | 35.0% | |
| ACAAGCTTCTGCATTTGAAT+CGG | + | chr5.2:58429711-58429730 | None:intergenic | 35.0% | |
| ACTAATCACTGTGTTCAATC+AGG | + | chr5.2:58430632-58430651 | None:intergenic | 35.0% | |
| AGATTCATAGAACGAAGCTA+AGG | - | chr5.2:58430033-58430052 | MS.gene44830:intron | 35.0% | |
| AGCAAAACAATACTGAGAAG+TGG | + | chr5.2:58430656-58430675 | None:intergenic | 35.0% | |
| CTGCTTGGATAAACAGATTA+AGG | - | chr5.2:58429226-58429245 | MS.gene44830:intron | 35.0% | |
| GAATCAAGTAGTTGCCAAAA+GGG | - | chr5.2:58431189-58431208 | MS.gene44830:intron | 35.0% | |
| GATTCATAGAACGAAGCTAA+GGG | - | chr5.2:58430034-58430053 | MS.gene44830:intron | 35.0% | |
| GGTTCAATTTCTGTTAAACC+AGG | - | chr5.2:58432244-58432263 | MS.gene44830:intron | 35.0% | |
| TAAGCTCTTTCAAACACTGA+AGG | - | chr5.2:58431584-58431603 | MS.gene44830:intron | 35.0% | |
| TAATCAAGTGGTTGCCAAAA+AGG | + | chr5.2:58430210-58430229 | None:intergenic | 35.0% | |
| TCAATTTCTGTTAAACCAGG+AGG | - | chr5.2:58432247-58432266 | MS.gene44830:intron | 35.0% | |
| TCACCGAATGAAAATACTTG+CGG | - | chr5.2:58431541-58431560 | MS.gene44830:intron | 35.0% | |
| TGAATCAAGTAGTTGCCAAA+AGG | - | chr5.2:58431188-58431207 | MS.gene44830:intron | 35.0% | |
| TTGAGTTATGCTGAACATGT+TGG | + | chr5.2:58430860-58430879 | None:intergenic | 35.0% | |
| TTTGTCAACTCGATGAACAT+AGG | + | chr5.2:58431666-58431685 | None:intergenic | 35.0% | |
| ! | ATGCCGCAAGTATTTTCATT+CGG | + | chr5.2:58431547-58431566 | None:intergenic | 35.0% |
| ! | ATGTGTTTATGGACTGTTAC+GGG | - | chr5.2:58430315-58430334 | MS.gene44830:intron | 35.0% |
| ! | CTGCTTTAACTTCATTGCAA+TGG | + | chr5.2:58432289-58432308 | None:intergenic | 35.0% |
| ! | GCGCTGATGAAAAATGTTAA+TGG | + | chr5.2:58430779-58430798 | None:intergenic | 35.0% |
| ! | GTAACTTGTAAGCACTTGTA+CGG | - | chr5.2:58429915-58429934 | MS.gene44830:intron | 35.0% |
| ! | TGATTAGGGTCTTTTTGGAT+TGG | + | chr5.2:58429440-58429459 | None:intergenic | 35.0% |
| !! | GCATTGATGAAAAGCGTTAT+TGG | - | chr5.2:58430576-58430595 | MS.gene44830:intron | 35.0% |
| !!! | CTTTTTTGGGGCTTATCTTA+TGG | - | chr5.2:58429888-58429907 | MS.gene44830:intron | 35.0% |
| AAACAGATTAAGGCTCCGTT+TGG | - | chr5.2:58429236-58429255 | MS.gene44830:intron | 40.0% | |
| AACGATTCTTCACGACTGAT+AGG | - | chr5.2:58431231-58431250 | MS.gene44830:intron | 40.0% | |
| AAGCAAGGAGAATTGTCACA+TGG | - | chr5.2:58430240-58430259 | MS.gene44830:intron | 40.0% | |
| AATTGTCACATGGGAGTAGA+TGG | - | chr5.2:58430250-58430269 | MS.gene44830:intron | 40.0% | |
| AGATGTTCAACTGATCCTCT+CGG | - | chr5.2:58430155-58430174 | MS.gene44830:intron | 40.0% | |
| AGCAAGGAGAATTGTCACAT+GGG | - | chr5.2:58430241-58430260 | MS.gene44830:intron | 40.0% | |
| AGGATCAGTTGAACATCTGT+CGG | + | chr5.2:58430153-58430172 | None:intergenic | 40.0% | |
| ATATCTGCAGAAGAAGACTG+AGG | - | chr5.2:58430122-58430141 | MS.gene44830:intron | 40.0% | |
| ATCTTATGGCATACATCCTC+CGG | - | chr5.2:58431884-58431903 | MS.gene44830:intron | 40.0% | |
| ATGTGTGTATGGACAGTTAC+GGG | + | chr5.2:58431083-58431102 | None:intergenic | 40.0% | |
| GAAGCCAACGAAAGTTACAA+AGG | - | chr5.2:58429060-58429079 | MS.gene44830:intron | 40.0% | |
| GAAGCCATTAACACTACAAC+GGG | - | chr5.2:58429940-58429959 | MS.gene44830:intron | 40.0% | |
| GATGTGTGTATGGACAGTTA+CGG | + | chr5.2:58431084-58431103 | None:intergenic | 40.0% | |
| GCTCATGAACAATTTGCCTA+AGG | + | chr5.2:58431628-58431647 | None:intergenic | 40.0% | |
| GGAAGCCATTAACACTACAA+CGG | - | chr5.2:58429939-58429958 | MS.gene44830:intron | 40.0% | |
| TATCTGCAGAAGAAGACTGA+GGG | - | chr5.2:58430123-58430142 | MS.gene44830:intron | 40.0% | |
| TATGATTACCACTCCTACGA+TGG | + | chr5.2:58431420-58431439 | None:intergenic | 40.0% | |
| TGGTTTCAATGGCTATGGAT+CGG | + | chr5.2:58431271-58431290 | None:intergenic | 40.0% | |
| TTAAACCAACCCTCTATGCA+TGG | + | chr5.2:58430075-58430094 | None:intergenic | 40.0% | |
| TTGCTAATAATAGTGACCGG+AGG | + | chr5.2:58431903-58431922 | None:intergenic | 40.0% | |
| ! | AAAGTACCTCAAACTCGCAA+AGG | - | chr5.2:58428953-58428972 | MS.gene44830:CDS | 40.0% |
| ! | GGACTTGATTAGGGTCTTTT+TGG | + | chr5.2:58429445-58429464 | None:intergenic | 40.0% |
| ! | TAATGAATTTGCTCACCTCC+TGG | + | chr5.2:58432265-58432284 | None:intergenic | 40.0% |
| ! | TACACAATACGCACCCTTTT+TGG | - | chr5.2:58430193-58430212 | MS.gene44830:intron | 40.0% |
| !! | GAAGCTAAGGGTTGATTTTG+AGG | - | chr5.2:58430046-58430065 | MS.gene44830:intron | 40.0% |
| !! | TGCATAGAGGGTTGGTTTAA+TGG | - | chr5.2:58430075-58430094 | MS.gene44830:intron | 40.0% |
| AATGTCTTCCATCGTAGGAG+TGG | - | chr5.2:58431409-58431428 | MS.gene44830:intron | 45.0% | |
| ACTTGTAAGCACTTGTACGG+TGG | - | chr5.2:58429918-58429937 | MS.gene44830:intron | 45.0% | |
| ACTTTGCCATGACGATTAGC+AGG | + | chr5.2:58428938-58428957 | None:intergenic | 45.0% | |
| GAAGACATTGACACTGCGAT+GGG | + | chr5.2:58431398-58431417 | None:intergenic | 45.0% | |
| GGATCAGTTGAACATCTGTC+GGG | + | chr5.2:58430152-58430171 | None:intergenic | 45.0% | |
| GTGTCAATGTCTTCCATCGT+AGG | - | chr5.2:58431404-58431423 | MS.gene44830:intron | 45.0% | |
| TCAACTCGATGAACATAGGC+TGG | + | chr5.2:58431662-58431681 | None:intergenic | 45.0% | |
| TCCTCCCGTTGTAGTGTTAA+TGG | + | chr5.2:58429947-58429966 | None:intergenic | 45.0% | |
| TCGATTCCTGCTAATCGTCA+TGG | - | chr5.2:58428929-58428948 | MS.gene44830:CDS | 45.0% | |
| TTGAGGACACCATGCATAGA+GGG | - | chr5.2:58430063-58430082 | MS.gene44830:intron | 45.0% | |
| TTTGAGGACACCATGCATAG+AGG | - | chr5.2:58430062-58430081 | MS.gene44830:intron | 45.0% | |
| ! | AATGATTTTTCACGGCCGAG+AGG | + | chr5.2:58430173-58430192 | None:intergenic | 45.0% |
| ! | CGATGTTTCTGCAGCTTATG+AGG | - | chr5.2:58431801-58431820 | MS.gene44830:intron | 45.0% |
| !! | GAGGGTTGGTTTAATGGCAT+TGG | - | chr5.2:58430081-58430100 | MS.gene44830:intron | 45.0% |
| !!! | GATTTTAATTTTTTATATTT+GGG | - | chr5.2:58432223-58432242 | MS.gene44830:intron | 5.0% |
| !!! | TGATTTTAATTTTTTATATT+TGG | - | chr5.2:58432222-58432241 | MS.gene44830:intron | 5.0% |
| ACATAGGCTGGCATTAGCGT+TGG | + | chr5.2:58431650-58431669 | None:intergenic | 50.0% | |
| ACTGTAGCTACAAAGGACGG+TGG | - | chr5.2:58432311-58432330 | MS.gene44830:CDS | 50.0% | |
| AGCAGCGACTGTAGCTACAA+AGG | - | chr5.2:58432304-58432323 | MS.gene44830:CDS | 50.0% | |
| AGGGGTGGTTTCAATGGCTA+TGG | + | chr5.2:58431276-58431295 | None:intergenic | 50.0% | |
| GCCATTAACACTACAACGGG+AGG | - | chr5.2:58429943-58429962 | MS.gene44830:intron | 50.0% | |
| GCGACTGTAGCTACAAAGGA+CGG | - | chr5.2:58432308-58432327 | MS.gene44830:CDS | 50.0% | |
| GGAAGACATTGACACTGCGA+TGG | + | chr5.2:58431399-58431418 | None:intergenic | 50.0% | |
| TCAATGGCTATGGATCGGTG+TGG | + | chr5.2:58431266-58431285 | None:intergenic | 50.0% | |
| TGCTTAGGAGTGACACCCTT+TGG | + | chr5.2:58432000-58432019 | None:intergenic | 50.0% | |
| ! | GAGCTGATGACACACCCTTT+TGG | + | chr5.2:58431206-58431225 | None:intergenic | 50.0% |
| ! | TCTAGAACACCGTGCACAGA+GGG | + | chr5.2:58431295-58431314 | None:intergenic | 50.0% |
| !! | AAGCAAGAAGCGGTGTCATG+TGG | + | chr5.2:58431157-58431176 | None:intergenic | 50.0% |
| !! | AGCAAGAAGCGGTGTCATGT+GGG | + | chr5.2:58431156-58431175 | None:intergenic | 50.0% |
| !! | TTCTAGAACACCGTGCACAG+AGG | + | chr5.2:58431296-58431315 | None:intergenic | 50.0% |
| ACAGCACCAGAGTCTGCAAG+TGG | - | chr5.2:58432353-58432372 | MS.gene44830:CDS | 55.0% | |
| CTAGAACACCGTGCACAGAG+GGG | + | chr5.2:58431294-58431313 | None:intergenic | 55.0% | |
| GACATTGACACTGCGATGGG+AGG | + | chr5.2:58431395-58431414 | None:intergenic | 55.0% | |
| GCACAGAGGGGTGGTTTCAA+TGG | + | chr5.2:58431282-58431301 | None:intergenic | 55.0% | |
| GGACACCATGCATAGAGGGT+TGG | - | chr5.2:58430067-58430086 | MS.gene44830:intron | 55.0% | |
| TCTGCACCACTTGCAGACTC+TGG | + | chr5.2:58432362-58432381 | None:intergenic | 55.0% | |
| TGAAACCACCCCTCTGTGCA+CGG | - | chr5.2:58431283-58431302 | MS.gene44830:intron | 55.0% | |
| !! | CGGTGTCATGTGGGAGTAGA+TGG | + | chr5.2:58431147-58431166 | None:intergenic | 55.0% |
| GAACACCGTGCACAGAGGGG+TGG | + | chr5.2:58431291-58431310 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 58428884 | 58432388 | 58428884 | ID=MS.gene44830 |
| chr5.2 | mRNA | 58428884 | 58432388 | 58428884 | ID=MS.gene44830.t1;Parent=MS.gene44830 |
| chr5.2 | exon | 58432298 | 58432388 | 58432298 | ID=MS.gene44830.t1.exon1;Parent=MS.gene44830.t1 |
| chr5.2 | CDS | 58432298 | 58432388 | 58432298 | ID=cds.MS.gene44830.t1;Parent=MS.gene44830.t1 |
| chr5.2 | exon | 58432173 | 58432225 | 58432173 | ID=MS.gene44830.t1.exon2;Parent=MS.gene44830.t1 |
| chr5.2 | CDS | 58432173 | 58432225 | 58432173 | ID=cds.MS.gene44830.t1;Parent=MS.gene44830.t1 |
| chr5.2 | exon | 58428884 | 58429006 | 58428884 | ID=MS.gene44830.t1.exon3;Parent=MS.gene44830.t1 |
| chr5.2 | CDS | 58428884 | 58429006 | 58428884 | ID=cds.MS.gene44830.t1;Parent=MS.gene44830.t1 |
| Gene Sequence |
| Protein sequence |
