Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46807.t1 | XP_024633888.1 | 100 | 174 | 0 | 0 | 17 | 190 | 105 | 278 | 2.50E-97 | 364.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46807.t1 | P74516 | 49.7 | 147 | 66 | 3 | 17 | 163 | 11 | 149 | 3.8e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46807.t1 | G7IWJ3 | 100.0 | 174 | 0 | 0 | 17 | 190 | 105 | 278 | 1.8e-97 | 364.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene46807 | 0.826246 | 3.01E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene46807 | 0.817012 | 4.11E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene46807 | 0.806838 | 6.77E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene46807 | 0.8427 | 2.20E-58 | -1.69E-46 |
| MS.gene049910 | MS.gene46807 | 0.802256 | 6.12E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene46807 | 0.815926 | 7.20E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene46807 | 0.872932 | 2.17E-67 | -1.69E-46 |
| MS.gene050529 | MS.gene46807 | 0.816819 | 4.54E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene46807 | 0.825905 | 3.63E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene46807 | 0.84411 | 9.26E-59 | -1.69E-46 |
| MS.gene051662 | MS.gene46807 | 0.814478 | 1.51E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene46807 | 0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene46807 | 0.834554 | 2.80E-56 | -1.69E-46 |
| MS.gene052178 | MS.gene46807 | 0.840713 | 7.37E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene46807 | 0.803561 | 3.29E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene46807 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene052326 | MS.gene46807 | 0.820428 | 6.90E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene46807 | 0.826873 | 2.14E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene46807 | 0.845298 | 4.43E-59 | -1.69E-46 |
| MS.gene053907 | MS.gene46807 | 0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene46807 | 0.821546 | 3.81E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene46807 | 0.841551 | 4.44E-58 | -1.69E-46 |
| MS.gene055390 | MS.gene46807 | 0.836406 | 9.53E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene46807 | 0.864903 | 8.69E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene46807 | 0.822763 | 1.99E-53 | -1.69E-46 |
| MS.gene056314 | MS.gene46807 | 0.823203 | 1.57E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene46807 | 0.847855 | 8.88E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene46807 | 0.81489 | 1.22E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene46807 | 0.804659 | 1.94E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene46807 | 0.809043 | 2.30E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene46807 | 0.849022 | 4.22E-60 | -1.69E-46 |
| MS.gene058293 | MS.gene46807 | 0.811461 | 6.92E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene46807 | 0.840376 | 9.02E-58 | -1.69E-46 |
| MS.gene058845 | MS.gene46807 | 0.811726 | 6.06E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene46807 | 0.829322 | 5.49E-55 | -1.69E-46 |
| MS.gene059326 | MS.gene46807 | 0.805483 | 1.31E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene46807 | 0.840738 | 7.26E-58 | -1.69E-46 |
| MS.gene059597 | MS.gene46807 | 0.845499 | 3.91E-59 | -1.69E-46 |
| MS.gene059676 | MS.gene46807 | 0.818407 | 1.99E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene46807 | 0.804868 | 1.76E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene46807 | 0.805051 | 1.61E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene46807 | 0.826517 | 2.60E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene46807 | 0.843275 | 1.55E-58 | -1.69E-46 |
| MS.gene060476 | MS.gene46807 | 0.811782 | 5.89E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene46807 | 0.838494 | 2.78E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46807.t1 | MTR_3g027870 | 100.000 | 174 | 0 | 0 | 17 | 190 | 105 | 278 | 5.14e-130 | 366 |
| MS.gene46807.t1 | MTR_3g027870 | 77.011 | 174 | 0 | 1 | 17 | 190 | 105 | 238 | 1.72e-88 | 259 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46807.t1 | AT5G26880 | 75.862 | 174 | 41 | 1 | 17 | 190 | 91 | 263 | 1.20e-99 | 289 |
Find 40 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTAAAATTCACGATTCT+TGG | 0.322273 | 3.3:+20559507 | MS.gene46807:CDS |
| CTGTTGGACTACACTTAGTT+GGG | 0.340052 | 3.3:+20558113 | MS.gene46807:CDS |
| TTGCAATCTAACAATGCTTC+AGG | 0.341667 | 3.3:-20560292 | None:intergenic |
| CAATCCAGCTCGCTTTAGTT+TGG | 0.371247 | 3.3:-20558469 | None:intergenic |
| TGTTGTTCTTGGTAGATTCC+AGG | 0.384664 | 3.3:+20558052 | MS.gene46807:intron |
| GCAATGCAGCCAGTGTTTCC+TGG | 0.391133 | 3.3:-20558070 | None:intergenic |
| GATTGCAAAACTGAACCATT+TGG | 0.401086 | 3.3:+20560307 | MS.gene46807:CDS |
| CCTCTACTGCAAATTTACTT+TGG | 0.413024 | 3.3:+20557969 | MS.gene46807:CDS |
| CTGACATATGTTTCAACCAT+TGG | 0.414032 | 3.3:-20560349 | None:intergenic |
| TGTTAAAATTCACGATTCTT+GGG | 0.419531 | 3.3:+20559508 | MS.gene46807:CDS |
| CAAACTAAAGCGAGCTGGAT+TGG | 0.426885 | 3.3:+20558470 | MS.gene46807:CDS |
| TCATCCACCTTATATCCTAA+TGG | 0.433769 | 3.3:-20558444 | None:intergenic |
| TTGTTTGGTGCTGAAACTAC+TGG | 0.435992 | 3.3:+20560262 | MS.gene46807:CDS |
| CCAAAGTAAATTTGCAGTAG+AGG | 0.437807 | 3.3:-20557969 | None:intergenic |
| GCTGTTGGACTACACTTAGT+TGG | 0.447539 | 3.3:+20558112 | MS.gene46807:CDS |
| AGCGAGCTGGATTGGACTAC+TGG | 0.454007 | 3.3:+20558478 | MS.gene46807:CDS |
| TGACATATGTTTCAACCATT+GGG | 0.461962 | 3.3:-20560348 | None:intergenic |
| CAAAGTAAATTTGCAGTAGA+GGG | 0.478912 | 3.3:-20557968 | None:intergenic |
| TTGATAGTTCCACCACCAAA+TGG | 0.517426 | 3.3:-20560322 | None:intergenic |
| AAAATTCACGATTCTTGGGA+AGG | 0.519743 | 3.3:+20559512 | MS.gene46807:CDS |
| TGGTACAGGAAGGTGAAAAG+AGG | 0.523032 | 3.3:+20559636 | MS.gene46807:intron |
| CAATGGTTGAAACATATGTC+AGG | 0.541341 | 3.3:+20560350 | MS.gene46807:CDS |
| ACATGTGCAGCATCAGCTGT+TGG | 0.543758 | 3.3:+20558097 | MS.gene46807:CDS |
| CAATCTAACAATGCTTCAGG+TGG | 0.561011 | 3.3:-20560289 | None:intergenic |
| GTTGCTAGCATTTACAAAGA+GGG | 0.563609 | 3.3:+20559658 | MS.gene46807:CDS |
| TTGAATCTATCAGTAAGTGT+TGG | 0.576824 | 3.3:+20560376 | MS.gene46807:CDS |
| TGGTAGATTCCAGGAAACAC+TGG | 0.577588 | 3.3:+20558061 | MS.gene46807:intron |
| GATACCAAACTAAAGCGAGC+TGG | 0.587642 | 3.3:+20558465 | MS.gene46807:CDS |
| GGTTGCTAGCATTTACAAAG+AGG | 0.596965 | 3.3:+20559657 | MS.gene46807:CDS |
| TTGCTAGCATTTACAAAGAG+GGG | 0.609702 | 3.3:+20559659 | MS.gene46807:CDS |
| TGTTGGACTACACTTAGTTG+GGG | 0.616424 | 3.3:+20558114 | MS.gene46807:CDS |
| TCAGCCATTAGGATATAAGG+TGG | 0.622589 | 3.3:+20558440 | MS.gene46807:intron |
| AAAGTAAATTTGCAGTAGAG+GGG | 0.624145 | 3.3:-20557967 | None:intergenic |
| TGAAACATGTATTGATACTG+AGG | 0.624468 | 3.3:+20560456 | MS.gene46807:CDS |
| TGCAAAACTGAACCATTTGG+TGG | 0.624579 | 3.3:+20560310 | MS.gene46807:CDS |
| AACACAAAATTGCAGATACG+TGG | 0.626986 | 3.3:+20559484 | MS.gene46807:intron |
| GTATCAATACATGTTTCAGA+AGG | 0.633071 | 3.3:-20560451 | None:intergenic |
| AAAACTGAACCATTTGGTGG+TGG | 0.653381 | 3.3:+20560313 | MS.gene46807:CDS |
| AACATGTATTGATACTGAGG+AGG | 0.678112 | 3.3:+20560459 | MS.gene46807:CDS |
| TGGAACTATCAAGATCCCAA+TGG | 0.684890 | 3.3:+20560333 | MS.gene46807:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATGAATAAAGAAT+TGG | - | chr3.3:20559840-20559859 | None:intergenic | 10.0% |
| !! | ATATGTTAATAATAGCAATT+TGG | + | chr3.3:20558817-20558836 | MS.gene46807:intron | 15.0% |
| !! | ATTACTTAATATGTGTTAAA+CGG | + | chr3.3:20560126-20560145 | MS.gene46807:intron | 15.0% |
| !! | TGCTATTATTAACATATATT+AGG | - | chr3.3:20558814-20558833 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTTTTTTTACTTT+AGG | + | chr3.3:20559962-20559981 | MS.gene46807:intron | 15.0% |
| !!! | TTTTGATATACCATTAATTA+TGG | + | chr3.3:20560191-20560210 | MS.gene46807:intron | 15.0% |
| !! | AACTTTGATACAATACTTAT+AGG | + | chr3.3:20559914-20559933 | MS.gene46807:intron | 20.0% |
| !! | ATTGAAATCTTTATCTCATT+TGG | + | chr3.3:20558537-20558556 | MS.gene46807:intron | 20.0% |
| !! | TAGATGTACTAAATTTGAAA+AGG | - | chr3.3:20559378-20559397 | None:intergenic | 20.0% |
| !! | TTAATGGAAACAAATATAAC+AGG | - | chr3.3:20559466-20559485 | None:intergenic | 20.0% |
| !! | TTCAAAAGAAAATAAAGTCT+TGG | - | chr3.3:20559817-20559836 | None:intergenic | 20.0% |
| !! | TTGTATTTAATAGTGTATAG+TGG | + | chr3.3:20558312-20558331 | MS.gene46807:intron | 20.0% |
| !! | TTTGATATTTATGTTGTTCT+TGG | + | chr3.3:20558041-20558060 | MS.gene46807:intron | 20.0% |
| !!! | TAGTTTTTGTTTTTTTTACC+AGG | + | chr3.3:20558753-20558772 | MS.gene46807:intron | 20.0% |
| ! | AAAATCTCTCAATTACCAAA+GGG | + | chr3.3:20558015-20558034 | MS.gene46807:intron | 25.0% |
| ! | AAAATTATTAATGCGAGTAC+AGG | + | chr3.3:20559051-20559070 | MS.gene46807:intron | 25.0% |
| ! | AAACAATTTCTCTTTACACA+CGG | + | chr3.3:20559155-20559174 | MS.gene46807:intron | 25.0% |
| ! | AAGCATATATGATATATCCA+AGG | - | chr3.3:20558510-20558529 | None:intergenic | 25.0% |
| ! | AGAGAAATGCTATCATTAAA+GGG | - | chr3.3:20559735-20559754 | None:intergenic | 25.0% |
| ! | AGATGAAACAATATTAGATC+AGG | - | chr3.3:20559410-20559429 | None:intergenic | 25.0% |
| ! | ATAAATATCAAAGAACCCTT+TGG | - | chr3.3:20558033-20558052 | None:intergenic | 25.0% |
| ! | ATATGATATATCCAAGGATA+CGG | - | chr3.3:20558504-20558523 | None:intergenic | 25.0% |
| ! | TAAAATCTCTCAATTACCAA+AGG | + | chr3.3:20558014-20558033 | MS.gene46807:intron | 25.0% |
| ! | TACAAAGGAACCATAATTAA+TGG | - | chr3.3:20560204-20560223 | None:intergenic | 25.0% |
| ! | TAGAGAAATGCTATCATTAA+AGG | - | chr3.3:20559736-20559755 | None:intergenic | 25.0% |
| ! | TCAAACCAAACAAATTCTTA+TGG | + | chr3.3:20559863-20559882 | MS.gene46807:intron | 25.0% |
| ! | TGAAAAAATTGAACTGTGAT+GGG | + | chr3.3:20558672-20558691 | MS.gene46807:intron | 25.0% |
| ! | TGATACAATACTTATAGGAA+TGG | + | chr3.3:20559919-20559938 | MS.gene46807:intron | 25.0% |
| ! | TGTTAAAATTCACGATTCTT+GGG | + | chr3.3:20559508-20559527 | MS.gene46807:CDS | 25.0% |
| ! | TTGTTAAAATTCACGATTCT+TGG | + | chr3.3:20559507-20559526 | MS.gene46807:CDS | 25.0% |
| ! | TTTCCATATATTGTTTGCAA+CGG | - | chr3.3:20560082-20560101 | None:intergenic | 25.0% |
| !! | ATCATCCATAAGAATTTGTT+TGG | - | chr3.3:20559871-20559890 | None:intergenic | 25.0% |
| !! | GACATTTCAGTTTTCTATAA+AGG | + | chr3.3:20558879-20558898 | MS.gene46807:intron | 25.0% |
| !! | TATCTGCAATTTTGTGTTAA+TGG | - | chr3.3:20559482-20559501 | None:intergenic | 25.0% |
| !! | TATTTCAAAATTGTTGGTGA+TGG | + | chr3.3:20560000-20560019 | MS.gene46807:intron | 25.0% |
| !! | TGTTGTTCAGTTTGATTTAA+CGG | - | chr3.3:20558651-20558670 | None:intergenic | 25.0% |
| !! | TTCATTACTGAAGACATTTT+TGG | + | chr3.3:20560487-20560506 | MS.gene46807:CDS | 25.0% |
| !! | TTTTTACCAGGCTTAATATT+CGG | + | chr3.3:20558765-20558784 | MS.gene46807:intron | 25.0% |
| AAAGTAAATTTGCAGTAGAG+GGG | - | chr3.3:20557970-20557989 | None:intergenic | 30.0% | |
| AATTGTTTACTTGTTCCGAT+TGG | - | chr3.3:20559143-20559162 | None:intergenic | 30.0% | |
| AGGTAGTTAATAGCATCAAA+AGG | - | chr3.3:20559206-20559225 | None:intergenic | 30.0% | |
| ATAAAGGACTAAAGTAGTTC+CGG | + | chr3.3:20558895-20558914 | MS.gene46807:intron | 30.0% | |
| ATTCCAGGAACTTAACATTT+AGG | - | chr3.3:20559574-20559593 | None:intergenic | 30.0% | |
| CAAAGTAAATTTGCAGTAGA+GGG | - | chr3.3:20557971-20557990 | None:intergenic | 30.0% | |
| CAACGGATAAAACTTAGATA+TGG | - | chr3.3:20560065-20560084 | None:intergenic | 30.0% | |
| CTGAAAAAATTGAACTGTGA+TGG | + | chr3.3:20558671-20558690 | MS.gene46807:intron | 30.0% | |
| GAAAAGATAGAGGAATACAA+AGG | - | chr3.3:20558422-20558441 | None:intergenic | 30.0% | |
| GTATCAATACATGTTTCAGA+AGG | - | chr3.3:20560454-20560473 | None:intergenic | 30.0% | |
| TATCCGTTGCAAACAATATA+TGG | + | chr3.3:20560076-20560095 | MS.gene46807:intron | 30.0% | |
| TCGTTCACAAAGAATTAGTT+TGG | + | chr3.3:20558846-20558865 | MS.gene46807:intron | 30.0% | |
| TGACATATGTTTCAACCATT+GGG | - | chr3.3:20560351-20560370 | None:intergenic | 30.0% | |
| TGATCCAACAATATTGCAAT+AGG | + | chr3.3:20559887-20559906 | MS.gene46807:intron | 30.0% | |
| TGTAGTTCAGTTTAACAGTT+CGG | + | chr3.3:20558728-20558747 | MS.gene46807:intron | 30.0% | |
| TTCCAAAACAAGGCAATATA+AGG | + | chr3.3:20560164-20560183 | MS.gene46807:intron | 30.0% | |
| TTGAATCTATCAGTAAGTGT+TGG | + | chr3.3:20560376-20560395 | MS.gene46807:CDS | 30.0% | |
| ! | AAAAACTTTTCTACCATGCA+GGG | + | chr3.3:20558579-20558598 | MS.gene46807:intron | 30.0% |
| ! | AAAGGCGATTATCTTTTGTT+TGG | + | chr3.3:20560247-20560266 | MS.gene46807:CDS | 30.0% |
| ! | AGAATTAGTTTGGTTCGAAA+AGG | + | chr3.3:20558856-20558875 | MS.gene46807:intron | 30.0% |
| ! | GAATTAGTTTGGTTCGAAAA+GGG | + | chr3.3:20558857-20558876 | MS.gene46807:intron | 30.0% |
| ! | TCACGCTATTTCAAAATTGT+TGG | + | chr3.3:20559994-20560013 | MS.gene46807:intron | 30.0% |
| ! | TGAAACATGTATTGATACTG+AGG | + | chr3.3:20560456-20560475 | MS.gene46807:CDS | 30.0% |
| ! | TTTTCAGCCATTAGGATATA+AGG | + | chr3.3:20558437-20558456 | MS.gene46807:intron | 30.0% |
| !! | AAACTTAGATATGGTGCTAT+AGG | - | chr3.3:20560056-20560075 | None:intergenic | 30.0% |
| !! | TTTAACGGATCGTAAGTTTT+TGG | - | chr3.3:20558636-20558655 | None:intergenic | 30.0% |
| !!! | TCGTGATTATTTTTTGCAAC+AGG | + | chr3.3:20559538-20559557 | MS.gene46807:CDS | 30.0% |
| !!! | TTCCTTATATTGCCTTGTTT+TGG | - | chr3.3:20560169-20560188 | None:intergenic | 30.0% |
| AAAAGTCCTGCAACATACAA+AGG | - | chr3.3:20560219-20560238 | None:intergenic | 35.0% | |
| AAAATTCACGATTCTTGGGA+AGG | + | chr3.3:20559512-20559531 | MS.gene46807:CDS | 35.0% | |
| AACACAAAATTGCAGATACG+TGG | + | chr3.3:20559484-20559503 | MS.gene46807:intron | 35.0% | |
| AACTTCGTCCCATTGTAAAA+GGG | - | chr3.3:20559086-20559105 | None:intergenic | 35.0% | |
| ACCGAAAATAACCAAACTGT+GGG | - | chr3.3:20558709-20558728 | None:intergenic | 35.0% | |
| ACTAGTAGACTGTTCGTTAA+TGG | - | chr3.3:20559249-20559268 | None:intergenic | 35.0% | |
| AGTCTTGGATATTTACTTCC+TGG | - | chr3.3:20559802-20559821 | None:intergenic | 35.0% | |
| ATAAACCACGATAGACAGAT+AGG | - | chr3.3:20559279-20559298 | None:intergenic | 35.0% | |
| ATAATTACGACGAAGATTCC+AGG | - | chr3.3:20559589-20559608 | None:intergenic | 35.0% | |
| CAATGGTTGAAACATATGTC+AGG | + | chr3.3:20560350-20560369 | MS.gene46807:CDS | 35.0% | |
| CATCCTAAATGTTAAGTTCC+TGG | + | chr3.3:20559568-20559587 | MS.gene46807:intron | 35.0% | |
| CCAAAGTAAATTTGCAGTAG+AGG | - | chr3.3:20557972-20557991 | None:intergenic | 35.0% | |
| CCTCTACTGCAAATTTACTT+TGG | + | chr3.3:20557969-20557988 | MS.gene46807:CDS | 35.0% | |
| CTAGTAGACTGTTCGTTAAT+GGG | - | chr3.3:20559248-20559267 | None:intergenic | 35.0% | |
| CTGACATATGTTTCAACCAT+TGG | - | chr3.3:20560352-20560371 | None:intergenic | 35.0% | |
| CTGTACTTGTCTCCATTATT+TGG | + | chr3.3:20559616-20559635 | MS.gene46807:intron | 35.0% | |
| GATTGCAAAACTGAACCATT+TGG | + | chr3.3:20560307-20560326 | MS.gene46807:CDS | 35.0% | |
| GTTATGCAACACTGCTATAA+CGG | + | chr3.3:20558266-20558285 | MS.gene46807:intron | 35.0% | |
| GTTGCTAGCATTTACAAAGA+GGG | + | chr3.3:20559658-20559677 | MS.gene46807:CDS | 35.0% | |
| TAAACGACATCATAAGAGAC+AGG | - | chr3.3:20559778-20559797 | None:intergenic | 35.0% | |
| TAACTTCGTCCCATTGTAAA+AGG | - | chr3.3:20559087-20559106 | None:intergenic | 35.0% | |
| TACAAACCGAATATTAAGCC+TGG | - | chr3.3:20558774-20558793 | None:intergenic | 35.0% | |
| TAGAGGATAATTGAGCCAAT+CGG | + | chr3.3:20559125-20559144 | MS.gene46807:intron | 35.0% | |
| TCATCCACCTTATATCCTAA+TGG | - | chr3.3:20558447-20558466 | None:intergenic | 35.0% | |
| TCGTCCTATTGCAATATTGT+TGG | - | chr3.3:20559894-20559913 | None:intergenic | 35.0% | |
| TTGCAATCTAACAATGCTTC+AGG | - | chr3.3:20560295-20560314 | None:intergenic | 35.0% | |
| TTGCTAGCATTTACAAAGAG+GGG | + | chr3.3:20559659-20559678 | MS.gene46807:CDS | 35.0% | |
| TTGTCTCCATTATTTGGTAC+AGG | + | chr3.3:20559622-20559641 | MS.gene46807:intron | 35.0% | |
| ! | AACATGTATTGATACTGAGG+AGG | + | chr3.3:20560459-20560478 | MS.gene46807:CDS | 35.0% |
| ! | AAGCTTTGTATACAAGCTAG+AGG | + | chr3.3:20559108-20559127 | MS.gene46807:intron | 35.0% |
| ! | CAGGACTTTTCATACAGAAA+AGG | + | chr3.3:20560229-20560248 | MS.gene46807:intron | 35.0% |
| ! | CTCTCTTTTCTTCCAAAACA+AGG | + | chr3.3:20560154-20560173 | MS.gene46807:intron | 35.0% |
| ! | GAAAAACTTTTCTACCATGC+AGG | + | chr3.3:20558578-20558597 | MS.gene46807:intron | 35.0% |
| ! | GACTCTAACCCTTTTACAAT+GGG | + | chr3.3:20559075-20559094 | MS.gene46807:intron | 35.0% |
| ! | GTTTTACGGAACTGTTGTAA+TGG | + | chr3.3:20558975-20558994 | MS.gene46807:intron | 35.0% |
| ! | TCTTATGATGTCGTTTATCC+AGG | + | chr3.3:20559781-20559800 | MS.gene46807:intron | 35.0% |
| ! | TGACTCTAACCCTTTTACAA+TGG | + | chr3.3:20559074-20559093 | MS.gene46807:intron | 35.0% |
| ! | TTTGTTATACCCGTTCAGTT+CGG | + | chr3.3:20558953-20558972 | MS.gene46807:intron | 35.0% |
| !! | TAGCATCAAAAGGAGTACTT+AGG | - | chr3.3:20559196-20559215 | None:intergenic | 35.0% |
| !! | TCCCACAGTTTGGTTATTTT+CGG | + | chr3.3:20558705-20558724 | MS.gene46807:intron | 35.0% |
| AAAGTAGTTCCGGTTAGGAT+CGG | + | chr3.3:20558905-20558924 | MS.gene46807:intron | 40.0% | |
| AATTCTAGTACTACCCTGCA+TGG | - | chr3.3:20558595-20558614 | None:intergenic | 40.0% | |
| ACGGAACTGTTGTAATGGTT+CGG | + | chr3.3:20558980-20558999 | MS.gene46807:intron | 40.0% | |
| ATGGTTCCTTTGTATGTTGC+AGG | + | chr3.3:20560210-20560229 | MS.gene46807:intron | 40.0% | |
| CAATCTAACAATGCTTCAGG+TGG | - | chr3.3:20560292-20560311 | None:intergenic | 40.0% | |
| CACAATAGCGTAGCAGAATT+CGG | - | chr3.3:20558354-20558373 | None:intergenic | 40.0% | |
| CACCGAAAATAACCAAACTG+TGG | - | chr3.3:20558710-20558729 | None:intergenic | 40.0% | |
| CACCTTCCTGTACCAAATAA+TGG | - | chr3.3:20559631-20559650 | None:intergenic | 40.0% | |
| CACGATAGACAGATAGGTAA+TGG | - | chr3.3:20559273-20559292 | None:intergenic | 40.0% | |
| CATTACCTATCTGTCTATCG+TGG | + | chr3.3:20559271-20559290 | MS.gene46807:intron | 40.0% | |
| CCTAATGGCTGAAAAGATAG+AGG | - | chr3.3:20558432-20558451 | None:intergenic | 40.0% | |
| CTCCATTATTTGGTACAGGA+AGG | + | chr3.3:20559626-20559645 | MS.gene46807:intron | 40.0% | |
| CTGTTGGACTACACTTAGTT+GGG | + | chr3.3:20558113-20558132 | MS.gene46807:CDS | 40.0% | |
| GAACGGGTATAACAAAGGTT+TGG | - | chr3.3:20558949-20558968 | None:intergenic | 40.0% | |
| GAACTGAACGGGTATAACAA+AGG | - | chr3.3:20558954-20558973 | None:intergenic | 40.0% | |
| GAGGGGAACAAAAATTCACT+CGG | + | chr3.3:20559676-20559695 | MS.gene46807:CDS | 40.0% | |
| GGTTGCTAGCATTTACAAAG+AGG | + | chr3.3:20559657-20559676 | MS.gene46807:CDS | 40.0% | |
| TAGACTGTTCGTTAATGGGA+AGG | - | chr3.3:20559244-20559263 | None:intergenic | 40.0% | |
| TCAGCCATTAGGATATAAGG+TGG | + | chr3.3:20558440-20558459 | MS.gene46807:intron | 40.0% | |
| TGCAAAACTGAACCATTTGG+TGG | + | chr3.3:20560310-20560329 | MS.gene46807:CDS | 40.0% | |
| TGGAACTATCAAGATCCCAA+TGG | + | chr3.3:20560333-20560352 | MS.gene46807:CDS | 40.0% | |
| TGTTGGACTACACTTAGTTG+GGG | + | chr3.3:20558114-20558133 | MS.gene46807:CDS | 40.0% | |
| TGTTGTTCTTGGTAGATTCC+AGG | + | chr3.3:20558052-20558071 | MS.gene46807:intron | 40.0% | |
| TTCCGTAAAACCGAACTGAA+CGG | - | chr3.3:20558966-20558985 | None:intergenic | 40.0% | |
| ! | AAAACTGAACCATTTGGTGG+TGG | + | chr3.3:20560313-20560332 | MS.gene46807:CDS | 40.0% |
| ! | CCTCTATCTTTTCAGCCATT+AGG | + | chr3.3:20558429-20558448 | MS.gene46807:intron | 40.0% |
| ! | TCAAGATTTAGAGTACGCGT+AGG | - | chr3.3:20559334-20559353 | None:intergenic | 40.0% |
| ! | TTCGCAGTGTTGTTAAATCG+CGG | - | chr3.3:20558386-20558405 | None:intergenic | 40.0% |
| ! | TTGATAGTTCCACCACCAAA+TGG | - | chr3.3:20560325-20560344 | None:intergenic | 40.0% |
| !! | TCAAAAGGAGTACTTAGGTC+TGG | - | chr3.3:20559191-20559210 | None:intergenic | 40.0% |
| !! | TTGTTTGGTGCTGAAACTAC+TGG | + | chr3.3:20560262-20560281 | MS.gene46807:CDS | 40.0% |
| CAAACTAAAGCGAGCTGGAT+TGG | + | chr3.3:20558470-20558489 | MS.gene46807:CDS | 45.0% | |
| CAATCCAGCTCGCTTTAGTT+TGG | - | chr3.3:20558472-20558491 | None:intergenic | 45.0% | |
| GAGTTCTGCTTGACCCTTAT+TGG | + | chr3.3:20559306-20559325 | MS.gene46807:intron | 45.0% | |
| GATACCAAACTAAAGCGAGC+TGG | + | chr3.3:20558465-20558484 | MS.gene46807:CDS | 45.0% | |
| GCTGTTGGACTACACTTAGT+TGG | + | chr3.3:20558112-20558131 | MS.gene46807:CDS | 45.0% | |
| GGACTAAAGTAGTTCCGGTT+AGG | + | chr3.3:20558900-20558919 | MS.gene46807:intron | 45.0% | |
| TAGGATCGGAAACACAGAAC+AGG | + | chr3.3:20558919-20558938 | MS.gene46807:intron | 45.0% | |
| TCCGTAAAACCGAACTGAAC+GGG | - | chr3.3:20558965-20558984 | None:intergenic | 45.0% | |
| TCGTGAACTATCCCACAGTT+TGG | + | chr3.3:20558695-20558714 | MS.gene46807:intron | 45.0% | |
| TCTGTGTTTCCGATCCTAAC+CGG | - | chr3.3:20558917-20558936 | None:intergenic | 45.0% | |
| TGGTACAGGAAGGTGAAAAG+AGG | + | chr3.3:20559636-20559655 | MS.gene46807:intron | 45.0% | |
| TGGTAGATTCCAGGAAACAC+TGG | + | chr3.3:20558061-20558080 | MS.gene46807:intron | 45.0% | |
| ! | ACCCGTTCAGTTCGGTTTTA+CGG | + | chr3.3:20558961-20558980 | MS.gene46807:intron | 45.0% |
| ACATGTGCAGCATCAGCTGT+TGG | + | chr3.3:20558097-20558116 | MS.gene46807:CDS | 50.0% | |
| AGTACGCGTAGGAGCCAATA+AGG | - | chr3.3:20559323-20559342 | None:intergenic | 50.0% | |
| GAAGGTGACTAACTCGATGG+AGG | - | chr3.3:20559226-20559245 | None:intergenic | 50.0% | |
| GTACGCGTAGGAGCCAATAA+GGG | - | chr3.3:20559322-20559341 | None:intergenic | 50.0% | |
| TGGGAAGGTGACTAACTCGA+TGG | - | chr3.3:20559229-20559248 | None:intergenic | 50.0% | |
| GCAATGCAGCCAGTGTTTCC+TGG | - | chr3.3:20558073-20558092 | None:intergenic | 55.0% | |
| TGGACTACTGGCCGTATCCT+TGG | + | chr3.3:20558490-20558509 | MS.gene46807:intron | 55.0% | |
| ! | AGCGAGCTGGATTGGACTAC+TGG | + | chr3.3:20558478-20558497 | MS.gene46807:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 20557943 | 20560513 | 20557943 | ID=MS.gene46807 |
| chr3.3 | mRNA | 20557943 | 20560513 | 20557943 | ID=MS.gene46807.t1;Parent=MS.gene46807 |
| chr3.3 | exon | 20557943 | 20557990 | 20557943 | ID=MS.gene46807.t1.exon1;Parent=MS.gene46807.t1 |
| chr3.3 | CDS | 20557943 | 20557990 | 20557943 | ID=cds.MS.gene46807.t1;Parent=MS.gene46807.t1 |
| chr3.3 | exon | 20558067 | 20558135 | 20558067 | ID=MS.gene46807.t1.exon2;Parent=MS.gene46807.t1 |
| chr3.3 | CDS | 20558067 | 20558135 | 20558067 | ID=cds.MS.gene46807.t1;Parent=MS.gene46807.t1 |
| chr3.3 | exon | 20558444 | 20558502 | 20558444 | ID=MS.gene46807.t1.exon3;Parent=MS.gene46807.t1 |
| chr3.3 | CDS | 20558444 | 20558502 | 20558444 | ID=cds.MS.gene46807.t1;Parent=MS.gene46807.t1 |
| chr3.3 | exon | 20559499 | 20559559 | 20559499 | ID=MS.gene46807.t1.exon4;Parent=MS.gene46807.t1 |
| chr3.3 | CDS | 20559499 | 20559559 | 20559499 | ID=cds.MS.gene46807.t1;Parent=MS.gene46807.t1 |
| chr3.3 | exon | 20559644 | 20559697 | 20559644 | ID=MS.gene46807.t1.exon5;Parent=MS.gene46807.t1 |
| chr3.3 | CDS | 20559644 | 20559697 | 20559644 | ID=cds.MS.gene46807.t1;Parent=MS.gene46807.t1 |
| chr3.3 | exon | 20560232 | 20560513 | 20560232 | ID=MS.gene46807.t1.exon6;Parent=MS.gene46807.t1 |
| chr3.3 | CDS | 20560232 | 20560513 | 20560232 | ID=cds.MS.gene46807.t1;Parent=MS.gene46807.t1 |
| Gene Sequence |
| Protein sequence |
