Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47990.t1 | XP_003617804.1 | 94.3 | 349 | 20 | 0 | 11 | 359 | 1 | 349 | 8.40E-163 | 583.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47990.t1 | Q8LBL1 | 61.3 | 336 | 115 | 4 | 11 | 334 | 1 | 333 | 2.3e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47990.t1 | G7K4P7 | 94.3 | 349 | 20 | 0 | 11 | 359 | 1 | 349 | 6.0e-163 | 583.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049499 | MS.gene47990 | 0.81326 | 2.80E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene47990 | 0.830381 | 3.03E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene47990 | 0.826214 | 3.07E-54 | -1.69E-46 |
| MS.gene050238 | MS.gene47990 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene47990 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene47990 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene47990 | 0.816375 | 5.71E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene47990 | 0.806906 | 6.55E-50 | -1.69E-46 |
| MS.gene051538 | MS.gene47990 | 0.810713 | 1.01E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene47990 | 0.839516 | 1.51E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene47990 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene054178 | MS.gene47990 | 0.819418 | 1.17E-52 | -1.69E-46 |
| MS.gene055229 | MS.gene47990 | 0.820922 | 5.31E-53 | -1.69E-46 |
| MS.gene055386 | MS.gene47990 | 0.816536 | 5.26E-52 | -1.69E-46 |
| MS.gene056677 | MS.gene47990 | 0.841487 | 4.61E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene47990 | 0.812454 | 4.21E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene47990 | 0.844082 | 9.42E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene47990 | 0.85169 | 7.53E-61 | -1.69E-46 |
| MS.gene059145 | MS.gene47990 | 0.804545 | 2.05E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene47990 | 0.812294 | 4.56E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene47990 | -0.847333 | 1.24E-59 | -1.69E-46 |
| MS.gene060525 | MS.gene47990 | 0.810376 | 1.19E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene47990 | 0.804095 | 2.55E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene47990 | 0.815525 | 8.84E-52 | -1.69E-46 |
| MS.gene061160 | MS.gene47990 | 0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene47990 | 0.837143 | 6.19E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTTCTGAGGCCATATT+TGG | 0.140068 | 5.4:-75155810 | MS.gene47990:CDS |
| GACAAAAGGCACTTGTTAAA+TGG | 0.156121 | 5.4:-75155161 | MS.gene47990:CDS |
| ATAATCCTTATGGTCTATTT+AGG | 0.214338 | 5.4:-75155756 | MS.gene47990:CDS |
| CTTAGTCAATGTAGAGAAAT+TGG | 0.214466 | 5.4:-75155355 | MS.gene47990:CDS |
| CTTTAATCTTCTACCTTGTT+AGG | 0.232655 | 5.4:-75155725 | MS.gene47990:CDS |
| GCTTTCTAAATTTATCTTCA+TGG | 0.252407 | 5.4:-75155988 | MS.gene47990:CDS |
| GAAGAATATTTGCAGTGTTT+TGG | 0.270066 | 5.4:-75155251 | MS.gene47990:CDS |
| TGTTGAACAAACACAGTAAA+AGG | 0.292737 | 5.4:+75155320 | None:intergenic |
| TGTCACAATTGTAAAATATA+AGG | 0.307372 | 5.4:+75155662 | None:intergenic |
| GAAAATGACCAATTATGATT+TGG | 0.325083 | 5.4:-75155127 | MS.gene47990:CDS |
| ACAATTACAACTCTTGGTTA+TGG | 0.337875 | 5.4:-75155300 | MS.gene47990:CDS |
| TAGAACGGAGGAGCCTTCTT+TGG | 0.342691 | 5.4:+75155889 | None:intergenic |
| AAAAGTGGCTATAATCCTTA+TGG | 0.344112 | 5.4:-75155766 | MS.gene47990:CDS |
| CCCTTTCTGAGGCCATATTT+GGG | 0.348945 | 5.4:-75155809 | MS.gene47990:CDS |
| TGCGGCTTCCAAATCATAAT+TGG | 0.355383 | 5.4:+75155119 | None:intergenic |
| TTTCTCCGGAATGGCGTTGA+TGG | 0.365822 | 5.4:-75155568 | MS.gene47990:CDS |
| TGGATGTAGATGCCCAAATA+TGG | 0.385877 | 5.4:+75155797 | None:intergenic |
| ACAAAAGGCACTTGTTAAAT+GGG | 0.414401 | 5.4:-75155160 | MS.gene47990:CDS |
| TAGTCCCATCAACGCCATTC+CGG | 0.419499 | 5.4:+75155563 | None:intergenic |
| TGTTCAACAATTACAACTCT+TGG | 0.420374 | 5.4:-75155306 | MS.gene47990:CDS |
| AAGCAAAGCAGCAGATTACT+TGG | 0.421571 | 5.4:-75155535 | MS.gene47990:CDS |
| CCCAAATATGGCCTCAGAAA+GGG | 0.440438 | 5.4:+75155809 | None:intergenic |
| TTGTTAAATGGGTTCTTACA+AGG | 0.443343 | 5.4:-75155149 | MS.gene47990:CDS |
| TTCTCCGGAATGGCGTTGAT+GGG | 0.448679 | 5.4:-75155567 | MS.gene47990:CDS |
| GTCCTGTGATCTCAATAGTA+AGG | 0.450755 | 5.4:+75155944 | None:intergenic |
| ACAGGACACTGTGGCTCAAA+AGG | 0.460014 | 5.4:-75155928 | MS.gene47990:CDS |
| TCGTTTATCAACAAAGGAGC+AGG | 0.462707 | 5.4:+75155846 | None:intergenic |
| AGTAATCTGCTGCTTTGCTT+AGG | 0.463315 | 5.4:+75155538 | None:intergenic |
| ACAATGACCACAGTTGGATA+TGG | 0.469742 | 5.4:-75155642 | MS.gene47990:CDS |
| AGCTCCTTTAAAATTTCACT+TGG | 0.474112 | 5.4:+75155456 | None:intergenic |
| AAAAGTTTCTCTACTCAAGC+TGG | 0.474950 | 5.4:-75155273 | MS.gene47990:CDS |
| CCTTGATTTGGTTCCTAACA+AGG | 0.475820 | 5.4:+75155712 | None:intergenic |
| ATTTATAAGCTCAAAGAGAT+GGG | 0.476286 | 5.4:-75154393 | MS.gene47990:CDS |
| AGATATAACACTTGTGATGA+AGG | 0.479889 | 5.4:-75154355 | MS.gene47990:CDS |
| CCTTGTTAGGAACCAAATCA+AGG | 0.487447 | 5.4:-75155712 | MS.gene47990:CDS |
| GAGCTTGACATTGATCAGTC+TGG | 0.496153 | 5.4:-75154324 | MS.gene47990:CDS |
| AAACACCGAAAACAGACAAA+AGG | 0.497203 | 5.4:-75155175 | MS.gene47990:CDS |
| GCCGCAGATCTTGATGAGGA+TGG | 0.508757 | 5.4:-75155102 | MS.gene47990:CDS |
| TTGATGAGGATGGGACTGTT+GGG | 0.510565 | 5.4:-75155092 | MS.gene47990:intron |
| CTTATGGTCTATTTAGGTGT+AGG | 0.511721 | 5.4:-75155750 | MS.gene47990:CDS |
| CTTGATGAGGATGGGACTGT+TGG | 0.512385 | 5.4:-75155093 | MS.gene47990:CDS |
| TATTTATAAGCTCAAAGAGA+TGG | 0.513290 | 5.4:-75154394 | MS.gene47990:CDS |
| CTACACCTAAATAGACCATA+AGG | 0.525776 | 5.4:+75155751 | None:intergenic |
| GCCCAAATATGGCCTCAGAA+AGG | 0.525908 | 5.4:+75155808 | None:intergenic |
| ATTGTGACAATGACCACAGT+TGG | 0.542941 | 5.4:-75155648 | MS.gene47990:CDS |
| CCAAATATGGCCTCAGAAAG+GGG | 0.549928 | 5.4:+75155810 | None:intergenic |
| TTGTAAAATATAAGGCATCA+AGG | 0.551875 | 5.4:+75155670 | None:intergenic |
| CCGCAGATCTTGATGAGGAT+GGG | 0.555328 | 5.4:-75155101 | MS.gene47990:CDS |
| AAGGACGATTAAACCAAAGA+AGG | 0.555389 | 5.4:-75155902 | MS.gene47990:CDS |
| TCTTTGTCGTTTATCAACAA+AGG | 0.566507 | 5.4:+75155840 | None:intergenic |
| TGTTTAGTTCAGCCATGTAG+AGG | 0.586266 | 5.4:+75155193 | None:intergenic |
| TCCTGTGATCTCAATAGTAA+GGG | 0.587155 | 5.4:+75155945 | None:intergenic |
| TGTGAGGAGCACTTCTAGAA+CGG | 0.588750 | 5.4:+75155874 | None:intergenic |
| GCCCTTACTATTGAGATCAC+AGG | 0.597412 | 5.4:-75155946 | MS.gene47990:CDS |
| TAAGGTCACTATTGGGAACA+AGG | 0.603841 | 5.4:+75155616 | None:intergenic |
| ACTGTGGCTCAAAAGGCTAA+AGG | 0.606518 | 5.4:-75155921 | MS.gene47990:CDS |
| CTTGTTAGGAACCAAATCAA+GGG | 0.608102 | 5.4:-75155711 | MS.gene47990:CDS |
| CCCATCCTCATCAAGATCTG+CGG | 0.631851 | 5.4:+75155101 | None:intergenic |
| TTTATAAGCTCAAAGAGATG+GGG | 0.636037 | 5.4:-75154392 | MS.gene47990:CDS |
| GAGGAGCACTTCTAGAACGG+AGG | 0.643797 | 5.4:+75155877 | None:intergenic |
| AGAATCGATTCCCCTTTCTG+AGG | 0.645736 | 5.4:-75155820 | MS.gene47990:CDS |
| GGAAGCCGCAGATCTTGATG+AGG | 0.654838 | 5.4:-75155106 | MS.gene47990:CDS |
| AAAGGAGCAGGATCTGTGTG+AGG | 0.683580 | 5.4:+75155858 | None:intergenic |
| AAGGTCACCATATCCAACTG+TGG | 0.725731 | 5.4:+75155635 | None:intergenic |
| ATTGAGATCACAGGACACTG+TGG | 0.729465 | 5.4:-75155937 | MS.gene47990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATATATTTAAACCAT+TGG | + | chr5.4:75155817-75155836 | None:intergenic | 15.0% |
| !! | TTCATTTATTTGAATATCTT+TGG | - | chr5.4:75155835-75155854 | MS.gene47990:CDS | 15.0% |
| !!! | TTGATATTTTAATATGACAT+TGG | - | chr5.4:75155758-75155777 | MS.gene47990:CDS | 15.0% |
| !! | ACGAAAAATAAAATTAGATG+AGG | + | chr5.4:75155281-75155300 | None:intergenic | 20.0% |
| !! | AGTTGAGTTACAAATTTATA+AGG | - | chr5.4:75155703-75155722 | MS.gene47990:CDS | 20.0% |
| !! | ATATGAAATGAAAGTTCATT+AGG | + | chr5.4:75155329-75155348 | None:intergenic | 20.0% |
| !! | CGAAAAATAAAATTAGATGA+GGG | + | chr5.4:75155280-75155299 | None:intergenic | 20.0% |
| !! | GTTGAGTTACAAATTTATAA+GGG | - | chr5.4:75155704-75155723 | MS.gene47990:CDS | 20.0% |
| !! | TGTCACAATTGTAAAATATA+AGG | + | chr5.4:75154623-75154642 | None:intergenic | 20.0% |
| !! | TTGTACTAAATATTGTAACA+TGG | + | chr5.4:75155454-75155473 | None:intergenic | 20.0% |
| !!! | AGTACTATTTTACTATGAAA+AGG | + | chr5.4:75155620-75155639 | None:intergenic | 20.0% |
| ! | ACCTAACTCATTAGAATAAA+GGG | + | chr5.4:75155659-75155678 | None:intergenic | 25.0% |
| ! | ATAATCCTTATGGTCTATTT+AGG | - | chr5.4:75154526-75154545 | MS.gene47990:intron | 25.0% |
| ! | ATTTATAAGCTCAAAGAGAT+GGG | - | chr5.4:75155889-75155908 | MS.gene47990:CDS | 25.0% |
| ! | GAAAATGACCAATTATGATT+TGG | - | chr5.4:75155155-75155174 | MS.gene47990:CDS | 25.0% |
| ! | GCTTTCTAAATTTATCTTCA+TGG | - | chr5.4:75154294-75154313 | MS.gene47990:CDS | 25.0% |
| ! | TAAAAATAGAAGTCACACAA+TGG | + | chr5.4:75155586-75155605 | None:intergenic | 25.0% |
| ! | TACCTAACTCATTAGAATAA+AGG | + | chr5.4:75155660-75155679 | None:intergenic | 25.0% |
| ! | TATAGACTGTTAGATCATAT+TGG | - | chr5.4:75155419-75155438 | MS.gene47990:CDS | 25.0% |
| ! | TATTTATAAGCTCAAAGAGA+TGG | - | chr5.4:75155888-75155907 | MS.gene47990:CDS | 25.0% |
| !! | TTGTAAAATATAAGGCATCA+AGG | + | chr5.4:75154615-75154634 | None:intergenic | 25.0% |
| !!! | ATTGCTCTAGTTTTTTTCTT+CGG | - | chr5.4:75155347-75155366 | MS.gene47990:CDS | 25.0% |
| !!! | TGTGTGACTTCTATTTTTAA+TGG | - | chr5.4:75155587-75155606 | MS.gene47990:CDS | 25.0% |
| AAAAGTGGCTATAATCCTTA+TGG | - | chr5.4:75154516-75154535 | MS.gene47990:intron | 30.0% | |
| ACAATTACAACTCTTGGTTA+TGG | - | chr5.4:75154982-75155001 | MS.gene47990:intron | 30.0% | |
| ACCCTTTATTCTAATGAGTT+AGG | - | chr5.4:75155655-75155674 | MS.gene47990:CDS | 30.0% | |
| AGACTAAGGATTTATAAGCA+AGG | + | chr5.4:75155552-75155571 | None:intergenic | 30.0% | |
| AGATATAACACTTGTGATGA+AGG | - | chr5.4:75155927-75155946 | MS.gene47990:CDS | 30.0% | |
| ATATTTAGTACAAACCCGAT+TGG | - | chr5.4:75155461-75155480 | MS.gene47990:CDS | 30.0% | |
| CAGTGAAAAGTAAAATGAGA+TGG | - | chr5.4:75155783-75155802 | MS.gene47990:CDS | 30.0% | |
| CATTAGAATAAAGGGTAGTT+AGG | + | chr5.4:75155651-75155670 | None:intergenic | 30.0% | |
| CTTAGTCAATGTAGAGAAAT+TGG | - | chr5.4:75154927-75154946 | MS.gene47990:intron | 30.0% | |
| CTTTAATCTTCTACCTTGTT+AGG | - | chr5.4:75154557-75154576 | MS.gene47990:intron | 30.0% | |
| GAAAAGTAAAATGAGATGGT+GGG | - | chr5.4:75155787-75155806 | MS.gene47990:CDS | 30.0% | |
| TGAAAAGTAAAATGAGATGG+TGG | - | chr5.4:75155786-75155805 | MS.gene47990:CDS | 30.0% | |
| TGGATAAAATAGTGAGACTA+AGG | + | chr5.4:75155566-75155585 | None:intergenic | 30.0% | |
| TGTTCAACAATTACAACTCT+TGG | - | chr5.4:75154976-75154995 | MS.gene47990:intron | 30.0% | |
| TGTTGAACAAACACAGTAAA+AGG | + | chr5.4:75154965-75154984 | None:intergenic | 30.0% | |
| TTTATAAGCTCAAAGAGATG+GGG | - | chr5.4:75155890-75155909 | MS.gene47990:CDS | 30.0% | |
| ! | AGTCTATACCGATTATTAAC+AGG | + | chr5.4:75155407-75155426 | None:intergenic | 30.0% |
| ! | GAAGAATATTTGCAGTGTTT+TGG | - | chr5.4:75155031-75155050 | MS.gene47990:intron | 30.0% |
| ! | TCGTTTAAGTTAAATGCCAA+AGG | - | chr5.4:75155297-75155316 | MS.gene47990:CDS | 30.0% |
| ! | TCTTTGTCGTTTATCAACAA+AGG | + | chr5.4:75154445-75154464 | None:intergenic | 30.0% |
| ! | TGGTCCAAGTGAAATTTTAA+AGG | - | chr5.4:75154822-75154841 | MS.gene47990:intron | 30.0% |
| ! | TTGTTAAATGGGTTCTTACA+AGG | - | chr5.4:75155133-75155152 | MS.gene47990:CDS | 30.0% |
| !! | ACAAAAGGCACTTGTTAAAT+GGG | - | chr5.4:75155122-75155141 | MS.gene47990:CDS | 30.0% |
| !! | ACATCCAAGCTTTAAAAAAG+TGG | - | chr5.4:75154501-75154520 | MS.gene47990:intron | 30.0% |
| !! | AGCTCCTTTAAAATTTCACT+TGG | + | chr5.4:75154829-75154848 | None:intergenic | 30.0% |
| !! | AGTTTTGTAAGGTCACTATT+GGG | + | chr5.4:75154676-75154695 | None:intergenic | 30.0% |
| !!! | ATAGCCACTTTTTTAAAGCT+TGG | + | chr5.4:75154508-75154527 | None:intergenic | 30.0% |
| !!! | CTTTGGTTTTATTGTTCACA+GGG | - | chr5.4:75155852-75155871 | MS.gene47990:CDS | 30.0% |
| !!! | TAGTTTTGTAAGGTCACTAT+TGG | + | chr5.4:75154677-75154696 | None:intergenic | 30.0% |
| !!! | TCTTTGGTTTTATTGTTCAC+AGG | - | chr5.4:75155851-75155870 | MS.gene47990:CDS | 30.0% |
| !!! | TTGCTCTAGTTTTTTTCTTC+GGG | - | chr5.4:75155348-75155367 | MS.gene47990:CDS | 30.0% |
| AAAAGTTTCTCTACTCAAGC+TGG | - | chr5.4:75155009-75155028 | MS.gene47990:intron | 35.0% | |
| AAACACCGAAAACAGACAAA+AGG | - | chr5.4:75155107-75155126 | MS.gene47990:CDS | 35.0% | |
| AAGGACGATTAAACCAAAGA+AGG | - | chr5.4:75154380-75154399 | MS.gene47990:CDS | 35.0% | |
| AAGGATTTATAAGCAAGGTG+AGG | + | chr5.4:75155547-75155566 | None:intergenic | 35.0% | |
| CTACACCTAAATAGACCATA+AGG | + | chr5.4:75154534-75154553 | None:intergenic | 35.0% | |
| CTTATGGTCTATTTAGGTGT+AGG | - | chr5.4:75154532-75154551 | MS.gene47990:intron | 35.0% | |
| CTTGTTAGGAACCAAATCAA+GGG | - | chr5.4:75154571-75154590 | MS.gene47990:intron | 35.0% | |
| GTTCATTAGGTTTAGACCTT+TGG | + | chr5.4:75155316-75155335 | None:intergenic | 35.0% | |
| TCCTGTGATCTCAATAGTAA+GGG | + | chr5.4:75154340-75154359 | None:intergenic | 35.0% | |
| ! | AAGTGCCTTTTGTCTGTTTT+CGG | + | chr5.4:75155115-75155134 | None:intergenic | 35.0% |
| ! | CTGTTTTCATTCCCTTGATT+TGG | + | chr5.4:75154585-75154604 | None:intergenic | 35.0% |
| ! | TTTCACTTGGACCAACTTTT+TGG | + | chr5.4:75154816-75154835 | None:intergenic | 35.0% |
| !! | GACAAAAGGCACTTGTTAAA+TGG | - | chr5.4:75155121-75155140 | MS.gene47990:CDS | 35.0% |
| !! | TCTTTTGATTCTCGTTATCG+CGG | - | chr5.4:75154894-75154913 | MS.gene47990:intron | 35.0% |
| !!! | TGCTCTAGTTTTTTTCTTCG+GGG | - | chr5.4:75155349-75155368 | MS.gene47990:CDS | 35.0% |
| AAGCAAAGCAGCAGATTACT+TGG | - | chr5.4:75154747-75154766 | MS.gene47990:intron | 40.0% | |
| ACAATGACCACAGTTGGATA+TGG | - | chr5.4:75154640-75154659 | MS.gene47990:intron | 40.0% | |
| ATTGTGACAATGACCACAGT+TGG | - | chr5.4:75154634-75154653 | MS.gene47990:intron | 40.0% | |
| CCAAAAGGTCAAAAGCCTAA+TGG | - | chr5.4:75155515-75155534 | MS.gene47990:CDS | 40.0% | |
| CCTTGTTAGGAACCAAATCA+AGG | - | chr5.4:75154570-75154589 | MS.gene47990:intron | 40.0% | |
| GTCCTGTGATCTCAATAGTA+AGG | + | chr5.4:75154341-75154360 | None:intergenic | 40.0% | |
| TAAGGTCACTATTGGGAACA+AGG | + | chr5.4:75154669-75154688 | None:intergenic | 40.0% | |
| TCGTTTATCAACAAAGGAGC+AGG | + | chr5.4:75154439-75154458 | None:intergenic | 40.0% | |
| TGCGGCTTCCAAATCATAAT+TGG | + | chr5.4:75155166-75155185 | None:intergenic | 40.0% | |
| TGGATGTAGATGCCCAAATA+TGG | + | chr5.4:75154488-75154507 | None:intergenic | 40.0% | |
| TGTGGCGACCTGTTAATAAT+CGG | - | chr5.4:75155396-75155415 | MS.gene47990:CDS | 40.0% | |
| TTATAAGCAAGGTGAGGTGA+AGG | + | chr5.4:75155541-75155560 | None:intergenic | 40.0% | |
| TTTAGTACAAACCCGATTGG+AGG | - | chr5.4:75155464-75155483 | MS.gene47990:CDS | 40.0% | |
| ! | AGCTCAGTTTTTCCTCTACA+TGG | - | chr5.4:75155077-75155096 | MS.gene47990:intron | 40.0% |
| ! | CCATTAGGCTTTTGACCTTT+TGG | + | chr5.4:75155518-75155537 | None:intergenic | 40.0% |
| ! | TGTTTAGTTCAGCCATGTAG+AGG | + | chr5.4:75155092-75155111 | None:intergenic | 40.0% |
| !! | AGTAATCTGCTGCTTTGCTT+AGG | + | chr5.4:75154747-75154766 | None:intergenic | 40.0% |
| !! | CCTTGATTTGGTTCCTAACA+AGG | + | chr5.4:75154573-75154592 | None:intergenic | 40.0% |
| !! | CTTTTGATTCTCGTTATCGC+GGG | - | chr5.4:75154895-75154914 | MS.gene47990:intron | 40.0% |
| !! | GCAGTGTTTTGGATACTAAC+AGG | - | chr5.4:75155042-75155061 | MS.gene47990:intron | 40.0% |
| !! | GGGCTCATTTTTATCATTGC+TGG | + | chr5.4:75154320-75154339 | None:intergenic | 40.0% |
| !! | TTTTGATTCTCGTTATCGCG+GGG | - | chr5.4:75154896-75154915 | MS.gene47990:intron | 40.0% |
| AAGGTCACCATATCCAACTG+TGG | + | chr5.4:75154650-75154669 | None:intergenic | 45.0% | |
| ACTGTGGCTCAAAAGGCTAA+AGG | - | chr5.4:75154361-75154380 | MS.gene47990:CDS | 45.0% | |
| ATGCACATGCGCCAAAAAGT+TGG | - | chr5.4:75154802-75154821 | MS.gene47990:intron | 45.0% | |
| ATTGAGATCACAGGACACTG+TGG | - | chr5.4:75154345-75154364 | MS.gene47990:CDS | 45.0% | |
| CCAAATATGGCCTCAGAAAG+GGG | + | chr5.4:75154475-75154494 | None:intergenic | 45.0% | |
| CCCAAATATGGCCTCAGAAA+GGG | + | chr5.4:75154476-75154495 | None:intergenic | 45.0% | |
| CCTCTAAACACTCCTCCAAT+CGG | + | chr5.4:75155479-75155498 | None:intergenic | 45.0% | |
| CTCTAAACACTCCTCCAATC+GGG | + | chr5.4:75155478-75155497 | None:intergenic | 45.0% | |
| GAGCTTGACATTGATCAGTC+TGG | - | chr5.4:75155958-75155977 | MS.gene47990:CDS | 45.0% | |
| GCCCTTACTATTGAGATCAC+AGG | - | chr5.4:75154336-75154355 | MS.gene47990:CDS | 45.0% | |
| GTGGGGATTCATGATCCAAA+AGG | - | chr5.4:75155500-75155519 | MS.gene47990:CDS | 45.0% | |
| TTGATGAGGATGGGACTGTT+GGG | - | chr5.4:75155190-75155209 | MS.gene47990:CDS | 45.0% | |
| ! | AGAATCGATTCCCCTTTCTG+AGG | - | chr5.4:75154462-75154481 | MS.gene47990:intron | 45.0% |
| !! | AACTTTTTGGCGCATGTGCA+TGG | + | chr5.4:75154803-75154822 | None:intergenic | 45.0% |
| !! | CCCTTTCTGAGGCCATATTT+GGG | - | chr5.4:75154473-75154492 | MS.gene47990:intron | 45.0% |
| !! | TGTGAGGAGCACTTCTAGAA+CGG | + | chr5.4:75154411-75154430 | None:intergenic | 45.0% |
| !!! | CGCAAGCGAGTAGTTTTGTA+AGG | + | chr5.4:75154687-75154706 | None:intergenic | 45.0% |
| !!! | CGCTTTTGTTTTCTCCGGAA+TGG | - | chr5.4:75154705-75154724 | MS.gene47990:intron | 45.0% |
| !!! | GCTTGCGCTTTTGTTTTCTC+CGG | - | chr5.4:75154700-75154719 | MS.gene47990:intron | 45.0% |
| AAAGGAGCAGGATCTGTGTG+AGG | + | chr5.4:75154427-75154446 | None:intergenic | 50.0% | |
| AAGGTGAGGTGAAGGCCATT+AGG | + | chr5.4:75155533-75155552 | None:intergenic | 50.0% | |
| ACAGGACACTGTGGCTCAAA+AGG | - | chr5.4:75154354-75154373 | MS.gene47990:CDS | 50.0% | |
| CCCATCCTCATCAAGATCTG+CGG | + | chr5.4:75155184-75155203 | None:intergenic | 50.0% | |
| CCGCAGATCTTGATGAGGAT+GGG | - | chr5.4:75155181-75155200 | MS.gene47990:CDS | 50.0% | |
| CTTGATGAGGATGGGACTGT+TGG | - | chr5.4:75155189-75155208 | MS.gene47990:CDS | 50.0% | |
| GCCCAAATATGGCCTCAGAA+AGG | + | chr5.4:75154477-75154496 | None:intergenic | 50.0% | |
| TAGAACGGAGGAGCCTTCTT+TGG | + | chr5.4:75154396-75154415 | None:intergenic | 50.0% | |
| TAGTCCCATCAACGCCATTC+CGG | + | chr5.4:75154722-75154741 | None:intergenic | 50.0% | |
| ! | TTTCTCCGGAATGGCGTTGA+TGG | - | chr5.4:75154714-75154733 | MS.gene47990:intron | 50.0% |
| !! | CCCCTTTCTGAGGCCATATT+TGG | - | chr5.4:75154472-75154491 | MS.gene47990:intron | 50.0% |
| !! | CCGATTGGAGGAGTGTTTAG+AGG | - | chr5.4:75155476-75155495 | MS.gene47990:CDS | 50.0% |
| !! | GAGGAGTGTTTAGAGGAGTG+GGG | - | chr5.4:75155483-75155502 | MS.gene47990:CDS | 50.0% |
| !! | GGAGGAGTGTTTAGAGGAGT+GGG | - | chr5.4:75155482-75155501 | MS.gene47990:CDS | 50.0% |
| !! | TGAGATGGTGGGAGTACCAA+TGG | - | chr5.4:75155798-75155817 | MS.gene47990:CDS | 50.0% |
| !! | TGGAGGAGTGTTTAGAGGAG+TGG | - | chr5.4:75155481-75155500 | MS.gene47990:CDS | 50.0% |
| !! | TTCTCCGGAATGGCGTTGAT+GGG | - | chr5.4:75154715-75154734 | MS.gene47990:intron | 50.0% |
| CACACTGCCTAACTCCGTCA+AGG | + | chr5.4:75155380-75155399 | None:intergenic | 55.0% | |
| CTTGACGGAGTTAGGCAGTG+TGG | - | chr5.4:75155378-75155397 | MS.gene47990:CDS | 55.0% | |
| GCCGCAGATCTTGATGAGGA+TGG | - | chr5.4:75155180-75155199 | MS.gene47990:CDS | 55.0% | |
| GGAAGCCGCAGATCTTGATG+AGG | - | chr5.4:75155176-75155195 | MS.gene47990:CDS | 55.0% | |
| GGCTTGTCCTTGACGGAGTT+AGG | - | chr5.4:75155370-75155389 | MS.gene47990:CDS | 55.0% | |
| TCTTCGGGGCTTGTCCTTGA+CGG | - | chr5.4:75155363-75155382 | MS.gene47990:CDS | 55.0% | |
| !! | GAGGAGCACTTCTAGAACGG+AGG | + | chr5.4:75154408-75154427 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 75154281 | 75156023 | 75154281 | ID=MS.gene47990 |
| chr5.4 | mRNA | 75154281 | 75156023 | 75154281 | ID=MS.gene47990.t1;Parent=MS.gene47990 |
| chr5.4 | exon | 75155093 | 75156023 | 75155093 | ID=MS.gene47990.t1.exon1;Parent=MS.gene47990.t1 |
| chr5.4 | CDS | 75155093 | 75156023 | 75155093 | ID=cds.MS.gene47990.t1;Parent=MS.gene47990.t1 |
| chr5.4 | exon | 75154281 | 75154431 | 75154281 | ID=MS.gene47990.t1.exon2;Parent=MS.gene47990.t1 |
| chr5.4 | CDS | 75154281 | 75154431 | 75154281 | ID=cds.MS.gene47990.t1;Parent=MS.gene47990.t1 |
| Gene Sequence |
| Protein sequence |
