Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48038.t1 | XP_003617387.2 | 98.8 | 922 | 11 | 0 | 1 | 922 | 1 | 922 | 0.00E+00 | 1740.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48038.t1 | Q8H1U4 | 65.6 | 916 | 306 | 4 | 1 | 913 | 1 | 910 | 0.0e+00 | 1110.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48038.t1 | G7K3C1 | 98.8 | 922 | 11 | 0 | 1 | 922 | 1 | 922 | 0.0e+00 | 1740.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050875 | MS.gene48038 | 0.812812 | 3.51E-51 | -1.69E-46 |
| MS.gene051914 | MS.gene48038 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene48038 | 0.829135 | 6.10E-55 | -1.69E-46 |
| MS.gene05652 | MS.gene48038 | 0.817056 | 4.02E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene48038 | 0.871962 | 4.58E-67 | -1.69E-46 |
| MS.gene058128 | MS.gene48038 | 0.846283 | 2.39E-59 | -1.69E-46 |
| MS.gene058853 | MS.gene48038 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene059616 | MS.gene48038 | 0.804074 | 2.57E-49 | -1.69E-46 |
| MS.gene059905 | MS.gene48038 | 0.801332 | 9.47E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene48038 | 0.801852 | 7.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80048 | MS.gene48038 | PPI |
| MS.gene56142 | MS.gene48038 | PPI |
| MS.gene031482 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene032323 | PPI |
| MS.gene25107 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene46213 | PPI |
| MS.gene48038 | MS.gene29661 | PPI |
| MS.gene48038 | MS.gene93612 | PPI |
| MS.gene26468 | MS.gene48038 | PPI |
| MS.gene32240 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene006458 | PPI |
| MS.gene059369 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene047859 | PPI |
| MS.gene48038 | MS.gene26467 | PPI |
| MS.gene38996 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene051100 | PPI |
| MS.gene48038 | MS.gene26890 | PPI |
| MS.gene48038 | MS.gene33573 | PPI |
| MS.gene48038 | MS.gene94232 | PPI |
| MS.gene48038 | MS.gene43131 | PPI |
| MS.gene074437 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene30421 | PPI |
| MS.gene48038 | MS.gene56523 | PPI |
| MS.gene48038 | MS.gene76069 | PPI |
| MS.gene48038 | MS.gene93598 | PPI |
| MS.gene48038 | MS.gene96778 | PPI |
| MS.gene006802 | MS.gene48038 | PPI |
| MS.gene007855 | MS.gene48038 | PPI |
| MS.gene48038 | MS.gene059371 | PPI |
| MS.gene059370 | MS.gene48038 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48038.t1 | MTR_5g091020 | 98.915 | 922 | 10 | 0 | 1 | 922 | 1 | 922 | 0.0 | 1872 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48038.t1 | AT1G06590 | 65.721 | 916 | 305 | 4 | 1 | 913 | 1 | 910 | 0.0 | 1169 |
Find 184 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAGCTGATCAGGTTATTT+TGG | 0.134029 | 5.2:+77029755 | MS.gene48038:CDS |
| CTAATGAGTTCTTCCAATTT+TGG | 0.138756 | 5.2:-77029454 | None:intergenic |
| CAAGTTCATCACACAGTTTC+TGG | 0.154029 | 5.2:-77037814 | None:intergenic |
| TTTGGATGCGAACAGTAATT+TGG | 0.171286 | 5.2:+77029773 | MS.gene48038:CDS |
| CTGAGCTTCATGGAAGATTT+TGG | 0.180753 | 5.2:-77035384 | None:intergenic |
| TGTTGTTGTTTAGGAATAAT+TGG | 0.207157 | 5.2:+77029711 | MS.gene48038:intron |
| CAACATTTAGCAGTCTTTAA+AGG | 0.213041 | 5.2:+77037395 | MS.gene48038:CDS |
| TCAAACTTGCTGTTTGAAAA+TGG | 0.214893 | 5.2:+77033156 | MS.gene48038:CDS |
| GCCAAGTTGCTTCCCAGTTT+TGG | 0.226282 | 5.2:-77029495 | None:intergenic |
| TTCTGTCAGGATTCTGTATC+TGG | 0.226675 | 5.2:+77035653 | MS.gene48038:CDS |
| ATATTCACCGTTTACTAGTA+TGG | 0.229148 | 5.2:+77033212 | MS.gene48038:CDS |
| TGAAATTGCTTTATTATGTT+TGG | 0.240051 | 5.2:+77032625 | MS.gene48038:CDS |
| ACTACCTTGGAAACGTTAAC+TGG | 0.242741 | 5.2:-77035414 | None:intergenic |
| GAAATTGCTTTATTATGTTT+GGG | 0.268224 | 5.2:+77032626 | MS.gene48038:CDS |
| GCTTTGGCATCACCTGTTAC+TGG | 0.276397 | 5.2:+77037839 | MS.gene48038:CDS |
| TCTGCGACAGCTACAGAAAT+TGG | 0.287798 | 5.2:+77031230 | MS.gene48038:CDS |
| TTCATTTCAGAAACATATAT+TGG | 0.294740 | 5.2:+77041034 | MS.gene48038:CDS |
| GGATGATGCATTTCCACTTT+GGG | 0.312657 | 5.2:+77032648 | MS.gene48038:CDS |
| GCAGTCATGTGATGATATTT+TGG | 0.317956 | 5.2:+77029429 | MS.gene48038:intron |
| TTGGATGCGAACAGTAATTT+GGG | 0.319904 | 5.2:+77029774 | MS.gene48038:CDS |
| CAGAAAATATTTGAACCATT+TGG | 0.320684 | 5.2:-77035635 | None:intergenic |
| CAAAGGCCCTTGTTATCATT+TGG | 0.320708 | 5.2:+77035360 | MS.gene48038:CDS |
| TGAGATTGATAAGCCAAAAC+TGG | 0.320794 | 5.2:+77029482 | MS.gene48038:CDS |
| ATAATTGGAGGTCCCGATTC+AGG | 0.332819 | 5.2:+77029726 | MS.gene48038:CDS |
| CCTCCATGACCAAGAATTAT+CGG | 0.342968 | 5.2:-77039323 | None:intergenic |
| GTTGTTGGCTTCCAATCATT+TGG | 0.351718 | 5.2:+77033317 | MS.gene48038:CDS |
| CTTCGCCATTGCCAAATGAT+TGG | 0.353923 | 5.2:-77033328 | None:intergenic |
| TGGGCATCCAAAGCTGGCTT+TGG | 0.360157 | 5.2:+77032667 | MS.gene48038:CDS |
| TCTTAATTTATCACTCTGTT+TGG | 0.362155 | 5.2:-77030944 | None:intergenic |
| ACCTGTTACTGGTGTAGATA+TGG | 0.365708 | 5.2:+77037850 | MS.gene48038:CDS |
| TTTCAATTTGCTACCGTTTG+AGG | 0.370631 | 5.2:+77029824 | MS.gene48038:CDS |
| TTCACCTCCAAAGCCAGCTT+TGG | 0.375269 | 5.2:-77032674 | None:intergenic |
| TTTAAAGCTAAAACGGTTGT+TGG | 0.375594 | 5.2:+77033302 | MS.gene48038:CDS |
| TGCTCTGCAGTTTCATGAAT+TGG | 0.376439 | 5.2:+77040935 | MS.gene48038:intron |
| AATGGCGAAGTTTGATTTAA+CGG | 0.376800 | 5.2:+77033341 | MS.gene48038:CDS |
| TACGAAGAAACTAGTTTAGA+TGG | 0.377685 | 5.2:+77030532 | MS.gene48038:CDS |
| ATGTTGGTTGGGCACAGAAC+TGG | 0.377959 | 5.2:-77035694 | None:intergenic |
| CCGGCTGGTAATAATAGTTC+TGG | 0.380070 | 5.2:+77032596 | MS.gene48038:CDS |
| TTACTTTGGCGGTCTTCATA+TGG | 0.381475 | 5.2:-77030976 | None:intergenic |
| CCACTTTGGGCATCCAAAGC+TGG | 0.381512 | 5.2:+77032661 | MS.gene48038:CDS |
| GCAACAGCTTGGGAGTTATA+TGG | 0.382924 | 5.2:+77035767 | MS.gene48038:CDS |
| GCTGAGCTATGGCTCTCTCT+TGG | 0.386122 | 5.2:+77039254 | MS.gene48038:CDS |
| TGACAAACTTGGGCAATTAG+AGG | 0.387249 | 5.2:+77040992 | MS.gene48038:CDS |
| GGTAGTGCCGTTTCTTTGAA+TGG | 0.388272 | 5.2:+77031195 | MS.gene48038:CDS |
| ACTAAACTCAGAAGTGCATT+AGG | 0.400537 | 5.2:-77030688 | None:intergenic |
| TGATGATTATACTGCTGCTT+TGG | 0.403956 | 5.2:+77031402 | MS.gene48038:CDS |
| TCAAGCACTGCTGGGATACT+AGG | 0.406665 | 5.2:+77033183 | MS.gene48038:CDS |
| GGTAAACTAACCTCGTATAT+CGG | 0.408448 | 5.2:-77029584 | None:intergenic |
| TCCATATCTACACCAGTAAC+AGG | 0.408554 | 5.2:-77037851 | None:intergenic |
| AATGGCATCTCAAGCACTGC+TGG | 0.409205 | 5.2:+77033174 | MS.gene48038:CDS |
| CAGAAAATTTAAAGCTAAAA+CGG | 0.410366 | 5.2:+77033295 | MS.gene48038:CDS |
| GGGATGATGCATTTCCACTT+TGG | 0.412550 | 5.2:+77032647 | MS.gene48038:CDS |
| AATTCTTGGTCATGGAGGTT+TGG | 0.413839 | 5.2:+77039328 | MS.gene48038:CDS |
| AGAAGAAATTGAAGCAAGAA+AGG | 0.415329 | 5.2:+77030630 | MS.gene48038:CDS |
| TTCTGAAGAACTCCAACCTT+TGG | 0.419782 | 5.2:+77039928 | MS.gene48038:CDS |
| AAACTTACTCGATGCAGTTC+AGG | 0.424047 | 5.2:-77031255 | None:intergenic |
| GCCCAACCAACATCAATTCC+TGG | 0.424701 | 5.2:+77035704 | MS.gene48038:CDS |
| AGCTTCGATATCACCTGAAT+CGG | 0.425601 | 5.2:-77029739 | None:intergenic |
| TCCAGGAATTGATGTTGGTT+GGG | 0.434584 | 5.2:-77035705 | None:intergenic |
| TTTGCTTGCTGAGATTCATA+AGG | 0.436669 | 5.2:+77038626 | MS.gene48038:CDS |
| AAGTTCATCACACAGTTTCT+GGG | 0.437398 | 5.2:-77037813 | None:intergenic |
| TGCTAAAGTATATGCAAGAT+TGG | 0.437680 | 5.2:-77033127 | None:intergenic |
| GCACTTCTGAGTTTAGTAGA+TGG | 0.438748 | 5.2:+77030694 | MS.gene48038:CDS |
| ATCCAGGAATTGATGTTGGT+TGG | 0.441435 | 5.2:-77035706 | None:intergenic |
| GCATCCAAAGCTGGCTTTGG+AGG | 0.444711 | 5.2:+77032670 | MS.gene48038:CDS |
| GTGTGATGAACTTGGTGCTT+TGG | 0.447118 | 5.2:+77037823 | MS.gene48038:CDS |
| CTTCATGAGCATGCTTTACA+CGG | 0.452464 | 5.2:+77037682 | MS.gene48038:CDS |
| TGGGCATGTACTGAGCTTCA+TGG | 0.453351 | 5.2:-77035394 | None:intergenic |
| GAAAGGCTTGCTAAAGCATA+TGG | 0.453725 | 5.2:-77039176 | None:intergenic |
| CTCTTACTTTAGCTGAGCTA+TGG | 0.457524 | 5.2:+77039243 | MS.gene48038:CDS |
| GAGGTTTGGAGCTCCGCTCA+CGG | 0.457750 | 5.2:+77039342 | MS.gene48038:CDS |
| TATACTTCGTGCAACAGCTT+GGG | 0.460709 | 5.2:+77035757 | MS.gene48038:CDS |
| TGAAGAACTCCAACCTTTGG+AGG | 0.461943 | 5.2:+77039931 | MS.gene48038:CDS |
| GCCAAAACTGGGAAGCAACT+TGG | 0.464201 | 5.2:+77029494 | MS.gene48038:CDS |
| GTAGTGCCGTTTCTTTGAAT+GGG | 0.464451 | 5.2:+77031196 | MS.gene48038:CDS |
| TTCAAACCCATTCAAAGAAA+CGG | 0.465431 | 5.2:-77031202 | None:intergenic |
| ATTCTGCATATCATTTAACT+TGG | 0.466902 | 5.2:+77039199 | MS.gene48038:CDS |
| TGTCATAGACCATGGCCATC+AGG | 0.469456 | 5.2:-77040974 | None:intergenic |
| TGTTGGTTGGGCACAGAACT+GGG | 0.472742 | 5.2:-77035693 | None:intergenic |
| CCCGTACCATGTTACTTTGG+CGG | 0.476806 | 5.2:-77030987 | None:intergenic |
| GAAATACCCATACTAGTAAA+CGG | 0.476976 | 5.2:-77033219 | None:intergenic |
| TTTATATCTGGCAGGAACTC+AGG | 0.477934 | 5.2:+77035516 | MS.gene48038:intron |
| TCTAAACTAGTTTCTTCGTA+TGG | 0.481801 | 5.2:-77030529 | None:intergenic |
| CTTTGCTGCGAGCAAGGTAC+GGG | 0.483239 | 5.2:-77037903 | None:intergenic |
| GCTTTGCTGCGAGCAAGGTA+CGG | 0.484021 | 5.2:-77037904 | None:intergenic |
| AGGTGATATCGAAGCTGATC+AGG | 0.492525 | 5.2:+77029746 | MS.gene48038:CDS |
| CAATTGTTTGTTCTCTTGAG+AGG | 0.495715 | 5.2:+77033258 | MS.gene48038:CDS |
| CGCACAAACTGGCAGATACA+AGG | 0.495982 | 5.2:+77031039 | MS.gene48038:CDS |
| TTTCCGATAATTCTTGGTCA+TGG | 0.496921 | 5.2:+77039320 | MS.gene48038:CDS |
| CTTGCTTTGCTGATGCATCA+AGG | 0.501716 | 5.2:+77036975 | MS.gene48038:CDS |
| CTCAAGATCTACGCTCCTCC+AGG | 0.503478 | 5.2:+77028898 | MS.gene48038:CDS |
| AGTTCTGCAATGACAATTGA+TGG | 0.505348 | 5.2:+77035575 | MS.gene48038:CDS |
| AGCAGTTCGTGTTTCTCAGC+AGG | 0.505632 | 5.2:+77032852 | MS.gene48038:CDS |
| GACAAAAGTGCAGGGAAAGA+AGG | 0.506651 | 5.2:+77032557 | MS.gene48038:intron |
| TATTCACCGTTTACTAGTAT+GGG | 0.513278 | 5.2:+77033213 | MS.gene48038:CDS |
| AGGAATTTACAAAAGCCAAA+TGG | 0.514925 | 5.2:+77035620 | MS.gene48038:CDS |
| TATCCCGTACCATGTTACTT+TGG | 0.516958 | 5.2:-77030990 | None:intergenic |
| GGCTTCCAATCATTTGGCAA+TGG | 0.517340 | 5.2:+77033323 | MS.gene48038:CDS |
| GCAAGGTACGGGCATGGCGA+AGG | 0.518844 | 5.2:-77037892 | None:intergenic |
| CAGAAACTGTGTGATGAACT+TGG | 0.519173 | 5.2:+77037815 | MS.gene48038:CDS |
| CCTTCAGTACAGCTTGGCTC+AGG | 0.520226 | 5.2:+77035600 | MS.gene48038:CDS |
| GCTACAGATTCGAACGGAAA+AGG | 0.520404 | 5.2:-77028934 | None:intergenic |
| CTATGTGATACAAATTTCAA+TGG | 0.520415 | 5.2:+77039392 | MS.gene48038:CDS |
| GGTTCAGTGCCCGTGTGGCA+TGG | 0.523020 | 5.2:-77039283 | None:intergenic |
| AGGTTTGGAGCTCCGCTCAC+GGG | 0.524912 | 5.2:+77039343 | MS.gene48038:CDS |
| CTACCTTGGAAACGTTAACT+GGG | 0.525003 | 5.2:-77035413 | None:intergenic |
| ATATACTTCGTGCAACAGCT+TGG | 0.526105 | 5.2:+77035756 | MS.gene48038:CDS |
| ATTTGTAACACATGCAAAAG+AGG | 0.526228 | 5.2:-77038569 | None:intergenic |
| ACCGCCAAAGTAACATGGTA+CGG | 0.526359 | 5.2:+77030986 | MS.gene48038:CDS |
| GGAAAACGCCATACCTCAAA+CGG | 0.526617 | 5.2:-77029837 | None:intergenic |
| AGTACTTGCAAAACAGATCC+AGG | 0.526714 | 5.2:-77035722 | None:intergenic |
| ACTTGGGCAATTAGAGGAAA+GGG | 0.529233 | 5.2:+77040998 | MS.gene48038:CDS |
| AATGAGCTTTACATATGCTA+AGG | 0.532611 | 5.2:-77037372 | None:intergenic |
| GCCATGGTCTATGACAAACT+TGG | 0.534302 | 5.2:+77040981 | MS.gene48038:CDS |
| GTAGCTCAACATAATCGTCT+TGG | 0.536260 | 5.2:+77028952 | MS.gene48038:CDS |
| CTGGAGGAGCGTAGATCTTG+AGG | 0.540154 | 5.2:-77028897 | None:intergenic |
| TCCCTATGTTTGTTAAGAGA+CGG | 0.541201 | 5.2:-77030474 | None:intergenic |
| GTCTGCTTACCTCCAAAGGT+TGG | 0.541541 | 5.2:-77039940 | None:intergenic |
| ATGGTGCCTTCAGTACAGCT+TGG | 0.541706 | 5.2:+77035594 | MS.gene48038:CDS |
| TCTGCAGTTTCATGAATTGG+CGG | 0.545463 | 5.2:+77040938 | MS.gene48038:intron |
| GCTTCGATATCACCTGAATC+GGG | 0.550133 | 5.2:-77029738 | None:intergenic |
| AACTTGGGCAATTAGAGGAA+AGG | 0.550820 | 5.2:+77040997 | MS.gene48038:CDS |
| CAGAGTGATAAATTAAGAGT+AGG | 0.551438 | 5.2:+77030949 | MS.gene48038:CDS |
| ACAGATCCAGGAATTGATGT+TGG | 0.553520 | 5.2:-77035710 | None:intergenic |
| CTGCGAGCAAGGTACGGGCA+TGG | 0.554584 | 5.2:-77037898 | None:intergenic |
| TAAATGATATGCAGAATGAA+AGG | 0.559046 | 5.2:-77039193 | None:intergenic |
| TTAGGTGTATGAAGATGAAA+CGG | 0.559249 | 5.2:-77030670 | None:intergenic |
| TGCCGTCTCTTAACAAACAT+AGG | 0.559859 | 5.2:+77030472 | MS.gene48038:CDS |
| GCAGTCTTTAAAGGATACAA+AGG | 0.560313 | 5.2:+77037404 | MS.gene48038:CDS |
| TAAAGTCTGCTTACCTCCAA+AGG | 0.561354 | 5.2:-77039944 | None:intergenic |
| CTTCTCTGCAGCATGTTCAA+AGG | 0.566366 | 5.2:+77035343 | MS.gene48038:intron |
| GAATTGCTTTGCTGCGAGCA+AGG | 0.566474 | 5.2:-77037909 | None:intergenic |
| ATGCAGCGGACGTTTAAAGC+TGG | 0.567106 | 5.2:+77037790 | MS.gene48038:intron |
| GCCGTCTCTTAACAAACATA+GGG | 0.569130 | 5.2:+77030473 | MS.gene48038:CDS |
| CCATGGTCTATGACAAACTT+GGG | 0.572262 | 5.2:+77040982 | MS.gene48038:CDS |
| CGGGCACTGAACCTTGTCCA+TGG | 0.573001 | 5.2:+77039293 | MS.gene48038:CDS |
| GGCTGAAGCATTCTACCTGA+TGG | 0.574890 | 5.2:+77040959 | MS.gene48038:CDS |
| ATGGCATCTCAAGCACTGCT+GGG | 0.575777 | 5.2:+77033175 | MS.gene48038:CDS |
| AAACTAGTTTCTTCGTATGG+AGG | 0.578782 | 5.2:-77030526 | None:intergenic |
| AGAATACGAGAACATGGACT+TGG | 0.579108 | 5.2:+77030582 | MS.gene48038:CDS |
| CCAGAACTATTATTACCAGC+CGG | 0.579141 | 5.2:-77032596 | None:intergenic |
| AGCTAAAGTAAGAGTAGCTG+AGG | 0.583735 | 5.2:-77039234 | None:intergenic |
| CCCAAGTTTGTCATAGACCA+TGG | 0.588238 | 5.2:-77040982 | None:intergenic |
| CCGCCAAAGTAACATGGTAC+GGG | 0.590022 | 5.2:+77030987 | MS.gene48038:CDS |
| CCTGAGCCAAGCTGTACTGA+AGG | 0.590820 | 5.2:-77035600 | None:intergenic |
| ATGAAACGGAACTCTTCCAC+TGG | 0.590952 | 5.2:-77030656 | None:intergenic |
| GAATTATCGGAAAAGCTCCA+TGG | 0.592292 | 5.2:-77039310 | None:intergenic |
| ATGCCCAGTTAACGTTTCCA+AGG | 0.595544 | 5.2:+77035410 | MS.gene48038:CDS |
| CCGATAATTCTTGGTCATGG+AGG | 0.595973 | 5.2:+77039323 | MS.gene48038:CDS |
| ATTCAATATATACTAACAAG+AGG | 0.598080 | 5.2:-77041086 | None:intergenic |
| TGTTGTTTAGGAATAATTGG+AGG | 0.608292 | 5.2:+77029714 | MS.gene48038:intron |
| AAATTGCTTTATTATGTTTG+GGG | 0.609522 | 5.2:+77032627 | MS.gene48038:CDS |
| GAGATTGATAAGCCAAAACT+GGG | 0.611852 | 5.2:+77029483 | MS.gene48038:CDS |
| AGCGCATTTATGCGAGACAT+AGG | 0.613638 | 5.2:-77036941 | None:intergenic |
| TTTGTAACACATGCAAAAGA+GGG | 0.615678 | 5.2:-77038568 | None:intergenic |
| CAGCTTGGGAGTTATATGGC+AGG | 0.615717 | 5.2:+77035771 | MS.gene48038:CDS |
| TGGATGCGAACAGTAATTTG+GGG | 0.621377 | 5.2:+77029775 | MS.gene48038:CDS |
| AAAGGAACGGAAACTTGACC+TGG | 0.622958 | 5.2:-77028916 | None:intergenic |
| TCGGAAAAGCTCCATGGACA+AGG | 0.623063 | 5.2:-77039304 | None:intergenic |
| TTGGATCAAGCCATGCCACA+CGG | 0.623878 | 5.2:+77039273 | MS.gene48038:CDS |
| TGTTGAGCTACAGATTCGAA+CGG | 0.626645 | 5.2:-77028940 | None:intergenic |
| ATACAGAGCGATACTTTGTG+TGG | 0.626980 | 5.2:-77028871 | None:intergenic |
| TTCATGAGCATGCTTTACAC+GGG | 0.629895 | 5.2:+77037683 | MS.gene48038:CDS |
| TGGATCAAGCCATGCCACAC+GGG | 0.632664 | 5.2:+77039274 | MS.gene48038:CDS |
| CCAGCTTTGGATGCCCAAAG+TGG | 0.638618 | 5.2:-77032661 | None:intergenic |
| TGAAGACCGCCAAAGTAACA+TGG | 0.640921 | 5.2:+77030981 | MS.gene48038:CDS |
| AGAAATTGAAGCAAGAAAGG+AGG | 0.641409 | 5.2:+77030633 | MS.gene48038:CDS |
| TGTTTGGATACTGAATCAGC+AGG | 0.647779 | 5.2:-77030928 | None:intergenic |
| GGAGTTATCGTAAATGCACC+TGG | 0.655237 | 5.2:-77028850 | None:intergenic |
| CAACAATATAGGCCCGTGAG+CGG | 0.657328 | 5.2:-77039355 | None:intergenic |
| GTATTCAGAATACGAGAACA+TGG | 0.657580 | 5.2:+77030576 | MS.gene48038:CDS |
| GAAGCAAGAAAGGAGGCCAG+TGG | 0.662714 | 5.2:+77030640 | MS.gene48038:CDS |
| AGCATTCTACCTGATGGCCA+TGG | 0.666689 | 5.2:+77040965 | MS.gene48038:CDS |
| AGATTCGAACGGAAAAGGAA+CGG | 0.668299 | 5.2:-77028929 | None:intergenic |
| CGCAGCAAAGCAATTCCGAG+AGG | 0.671365 | 5.2:+77037916 | MS.gene48038:CDS |
| TTTGGACCAAATGATAACAA+GGG | 0.679717 | 5.2:-77035366 | None:intergenic |
| GTTGGTTGGGCACAGAACTG+GGG | 0.696775 | 5.2:-77035692 | None:intergenic |
| GACAAGGTTCAGTGCCCGTG+TGG | 0.697635 | 5.2:-77039288 | None:intergenic |
| GGAACGGAAACTTGACCTGG+AGG | 0.699710 | 5.2:-77028913 | None:intergenic |
| GCTGTGATGTTGAAACAACC+AGG | 0.711853 | 5.2:+77028832 | MS.gene48038:CDS |
| GAACTATTATTACCAGCCGG+AGG | 0.715079 | 5.2:-77032593 | None:intergenic |
| TTATCAGAAATCTGGCAATG+CGG | 0.719122 | 5.2:+77039142 | MS.gene48038:intron |
| GTACGGGATATTGATCCCAG+TGG | 0.719445 | 5.2:+77031003 | MS.gene48038:CDS |
| GTTCATCTTAGCTCTCACCA+AGG | 0.742877 | 5.2:+77028978 | MS.gene48038:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77028829 | 77041106 | 77028829 | ID=MS.gene48038 |
| chr5.2 | mRNA | 77028829 | 77041106 | 77028829 | ID=MS.gene48038.t1;Parent=MS.gene48038 |
| chr5.2 | exon | 77028829 | 77028999 | 77028829 | ID=MS.gene48038.t1.exon1;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77028829 | 77028999 | 77028829 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77029433 | 77029595 | 77029433 | ID=MS.gene48038.t1.exon2;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77029433 | 77029595 | 77029433 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77029724 | 77029845 | 77029724 | ID=MS.gene48038.t1.exon3;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77029724 | 77029845 | 77029724 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77030466 | 77030715 | 77030466 | ID=MS.gene48038.t1.exon4;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77030466 | 77030715 | 77030466 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77030917 | 77031094 | 77030917 | ID=MS.gene48038.t1.exon5;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77030917 | 77031094 | 77030917 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77031191 | 77031269 | 77031191 | ID=MS.gene48038.t1.exon6;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77031191 | 77031269 | 77031191 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77031367 | 77031452 | 77031367 | ID=MS.gene48038.t1.exon7;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77031367 | 77031452 | 77031367 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77032565 | 77032691 | 77032565 | ID=MS.gene48038.t1.exon8;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77032565 | 77032691 | 77032565 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77032841 | 77032873 | 77032841 | ID=MS.gene48038.t1.exon9;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77032841 | 77032873 | 77032841 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77033114 | 77033362 | 77033114 | ID=MS.gene48038.t1.exon10;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77033114 | 77033362 | 77033114 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77035354 | 77035431 | 77035354 | ID=MS.gene48038.t1.exon11;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77035354 | 77035431 | 77035354 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77035530 | 77035792 | 77035530 | ID=MS.gene48038.t1.exon12;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77035530 | 77035792 | 77035530 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77036937 | 77036996 | 77036937 | ID=MS.gene48038.t1.exon13;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77036937 | 77036996 | 77036937 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77037358 | 77037425 | 77037358 | ID=MS.gene48038.t1.exon14;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77037358 | 77037425 | 77037358 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77037599 | 77037704 | 77037599 | ID=MS.gene48038.t1.exon15;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77037599 | 77037704 | 77037599 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77037796 | 77037937 | 77037796 | ID=MS.gene48038.t1.exon16;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77037796 | 77037937 | 77037796 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77038549 | 77038647 | 77038549 | ID=MS.gene48038.t1.exon17;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77038549 | 77038647 | 77038549 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77039149 | 77039413 | 77039149 | ID=MS.gene48038.t1.exon18;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77039149 | 77039413 | 77039149 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77039885 | 77039952 | 77039885 | ID=MS.gene48038.t1.exon19;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77039885 | 77039952 | 77039885 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| chr5.2 | exon | 77040945 | 77041106 | 77040945 | ID=MS.gene48038.t1.exon20;Parent=MS.gene48038.t1 |
| chr5.2 | CDS | 77040945 | 77041106 | 77040945 | ID=cds.MS.gene48038.t1;Parent=MS.gene48038.t1 |
| Gene Sequence |
| Protein sequence |
