AlfalfaGEDB | MS.gene48059

M. sativa cultivar XinJiangDaYe / MS.gene48059

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48059.t1	XP_003617415.1	95.7	69	3	0	1	69	18	86	2.30E-29	137.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48059.t1	G7KD46	95.7	69	3	0	1	69	18	86	1.7e-29	137.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050277	MS.gene48059	0.823055	1.70E-53	-1.69E-46
MS.gene050303	MS.gene48059	0.837987	3.76E-57	-1.69E-46
MS.gene051349	MS.gene48059	0.825632	4.22E-54	-1.69E-46
MS.gene051633	MS.gene48059	0.821453	4.01E-53	-1.69E-46
MS.gene052176	MS.gene48059	0.818395	2.00E-52	-1.69E-46
MS.gene052286	MS.gene48059	0.801616	8.28E-49	-1.69E-46
MS.gene052302	MS.gene48059	0.840652	7.64E-58	-1.69E-46
MS.gene052309	MS.gene48059	-0.849402	3.31E-60	-1.69E-46
MS.gene052376	MS.gene48059	0.847142	1.39E-59	-1.69E-46
MS.gene052824	MS.gene48059	0.801329	9.48E-49	-1.69E-46
MS.gene053006	MS.gene48059	0.800142	1.66E-48	-1.69E-46
MS.gene053188	MS.gene48059	0.819145	1.35E-52	-1.69E-46
MS.gene053294	MS.gene48059	0.808383	3.18E-50	-1.69E-46
MS.gene054537	MS.gene48059	0.823846	1.11E-53	-1.69E-46
MS.gene055808	MS.gene48059	0.816974	4.19E-52	-1.69E-46
MS.gene056091	MS.gene48059	0.800283	1.55E-48	-1.69E-46
MS.gene057079	MS.gene48059	0.923428	2.69E-89	-1.69E-46
MS.gene057140	MS.gene48059	0.805577	1.25E-49	-1.69E-46
MS.gene057234	MS.gene48059	0.802961	4.37E-49	-1.69E-46
MS.gene057555	MS.gene48059	0.804668	1.93E-49	-1.69E-46
MS.gene05795	MS.gene48059	0.814291	1.66E-51	-1.69E-46
MS.gene058238	MS.gene48059	0.813853	2.07E-51	-1.69E-46
MS.gene058399	MS.gene48059	0.810041	1.40E-50	-1.69E-46
MS.gene059317	MS.gene48059	0.831392	1.71E-55	-1.69E-46
MS.gene05954	MS.gene48059	0.815922	7.21E-52	-1.69E-46
MS.gene059569	MS.gene48059	0.808182	3.51E-50	-1.69E-46
MS.gene059830	MS.gene48059	0.827415	1.58E-54	-1.69E-46
MS.gene060297	MS.gene48059	0.824457	7.99E-54	-1.69E-46
MS.gene060586	MS.gene48059	0.827394	1.60E-54	-1.69E-46
MS.gene060619	MS.gene48059	0.804836	1.78E-49	-1.69E-46
MS.gene061040	MS.gene48059	-0.800101	1.69E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48059.t1	MTR_5g091310	95.652	69	3	0	1	69	18	86	1.87e-44	137
MS.gene48059.t1	MTR_4g094635	50.685	73	29	3	1	69	21	90	3.30e-16	66.6
MS.gene48059.t1	MTR_4g094630	50.000	72	28	3	3	69	6	74	2.10e-15	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene48059.t1	AT5G46295	60.465	43	16	1	27	69	30	71	2.84e-13	58.5
MS.gene48059.t1	AT1G06475	55.556	45	19	1	26	69	49	93	4.37e-12	56.2

Find 10 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAAGTGAAGAAAGAAATT+TGG	0.267366	5.1:+72763285	MS.gene48059:CDS
CATGGAGATTCTCTGCGTTT+AGG	0.350104	5.1:+72763309	MS.gene48059:CDS
TCGTGGATACTGTTGTGTTT+AGG	0.353121	5.1:+72763363	MS.gene48059:CDS
TGCTTCTTCTATCTTTGTTG+TGG	0.457389	5.1:+72763428	MS.gene48059:CDS
GAAAGAAGAGTAGCATGTTA+TGG	0.462290	5.1:+72763258	MS.gene48059:CDS
TCATCTTCAAATGACATTCG+TGG	0.492578	5.1:+72763346	MS.gene48059:CDS
GGAGATTCTCTGCGTTTAGG+TGG	0.556332	5.1:+72763312	MS.gene48059:CDS
TGAAGAAAGAAATTTGGCCA+TGG	0.584343	5.1:+72763291	MS.gene48059:CDS
AAGATAGAAGAAGCAAACAG+TGG	0.638854	5.1:-72763420	None:intergenic
CTAAACGCAGAGAATCTCCA+TGG	0.659319	5.1:-72763308	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AGAAAGTGAAGAAAGAAATT+TGG	+	chr5.1:72763285-72763304	MS.gene48059:CDS	25.0%
	AAGATAGAAGAAGCAAACAG+TGG	-	chr5.1:72763423-72763442	None:intergenic	35.0%
	GAAAGAAGAGTAGCATGTTA+TGG	+	chr5.1:72763258-72763277	MS.gene48059:CDS	35.0%
	TCATCTTCAAATGACATTCG+TGG	+	chr5.1:72763346-72763365	MS.gene48059:CDS	35.0%
	TGAAGAAAGAAATTTGGCCA+TGG	+	chr5.1:72763291-72763310	MS.gene48059:CDS	35.0%
	TGCTTCTTCTATCTTTGTTG+TGG	+	chr5.1:72763428-72763447	MS.gene48059:CDS	35.0%
	TCGTGGATACTGTTGTGTTT+AGG	+	chr5.1:72763363-72763382	MS.gene48059:CDS	40.0%
	CATGGAGATTCTCTGCGTTT+AGG	+	chr5.1:72763309-72763328	MS.gene48059:CDS	45.0%
	CTAAACGCAGAGAATCTCCA+TGG	-	chr5.1:72763311-72763330	None:intergenic	45.0%
	GGAGATTCTCTGCGTTTAGG+TGG	+	chr5.1:72763312-72763331	MS.gene48059:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	72763254	72763463	72763254	ID=MS.gene48059
chr5.1	mRNA	72763254	72763463	72763254	ID=MS.gene48059.t1;Parent=MS.gene48059
chr5.1	exon	72763254	72763463	72763254	ID=MS.gene48059.t1.exon1;Parent=MS.gene48059.t1
chr5.1	CDS	72763254	72763463	72763254	ID=cds.MS.gene48059.t1;Parent=MS.gene48059.t1

Gene Sequence	>MS.gene48059 ATGGGAAAGAAGAGTAGCATGTTATGGTTGAAGAAAGTGAAGAAAGAAATTTGGCCATGGAGATTCTCTGCGTTTAGGTGGAAACGACTTGATCATCTTCAAATGACATTCGTGGATACTGTTGTGTTTAGGATACTCTCTGTTGCTGAAGCTGTTGTTCTTGTCTCCACTGTTTGCTTCTTCTATCTTTGTTGTGGATGCAATTTCTGA
Protein sequence	>MS.gene48059.t1 MGKKSSMLWLKKVKKEIWPWRFSAFRWKRLDHLQMTFVDTVVFRILSVAEAVVLVSTVCFFYLCCGCNF