Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48746.t1 | AFK48770.1 | 95.9 | 296 | 12 | 0 | 1 | 296 | 78 | 373 | 1.40E-160 | 575.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48746.t1 | Q9SJZ2 | 78.2 | 284 | 62 | 0 | 1 | 284 | 43 | 326 | 3.0e-130 | 466.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48746.t1 | G7JKU3 | 95.9 | 296 | 12 | 0 | 1 | 296 | 120 | 415 | 1.0e-160 | 575.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene35931 | MS.gene48746 | PPI |
MS.gene20276 | MS.gene48746 | PPI |
MS.gene24236 | MS.gene48746 | PPI |
MS.gene67066 | MS.gene48746 | PPI |
MS.gene27263 | MS.gene48746 | PPI |
MS.gene48746 | MS.gene072888 | PPI |
MS.gene35795 | MS.gene48746 | PPI |
MS.gene90718 | MS.gene48746 | PPI |
MS.gene32715 | MS.gene48746 | PPI |
MS.gene57204 | MS.gene48746 | PPI |
MS.gene014836 | MS.gene48746 | PPI |
MS.gene80170 | MS.gene48746 | PPI |
MS.gene27001 | MS.gene48746 | PPI |
MS.gene09575 | MS.gene48746 | PPI |
MS.gene029047 | MS.gene48746 | PPI |
MS.gene014924 | MS.gene48746 | PPI |
MS.gene32635 | MS.gene48746 | PPI |
MS.gene48746 | MS.gene35853 | PPI |
MS.gene48746 | MS.gene015231 | PPI |
MS.gene44482 | MS.gene48746 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48746.t1 | MTR_4g030890 | 95.946 | 296 | 12 | 0 | 1 | 296 | 120 | 415 | 0.0 | 591 |
MS.gene48746.t1 | MTR_4g031140 | 83.108 | 296 | 50 | 0 | 1 | 296 | 48 | 343 | 0.0 | 517 |
MS.gene48746.t1 | MTR_3g072190 | 49.458 | 277 | 130 | 3 | 4 | 277 | 49 | 318 | 3.70e-89 | 268 |
MS.gene48746.t1 | MTR_3g094650 | 46.454 | 282 | 139 | 4 | 1 | 277 | 48 | 322 | 4.76e-87 | 263 |
MS.gene48746.t1 | MTR_5g021060 | 47.670 | 279 | 142 | 3 | 3 | 277 | 52 | 330 | 6.88e-86 | 261 |
MS.gene48746.t1 | MTR_8g076820 | 47.331 | 281 | 144 | 3 | 1 | 277 | 50 | 330 | 1.41e-85 | 260 |
MS.gene48746.t1 | MTR_2g040000 | 47.535 | 284 | 139 | 4 | 3 | 278 | 51 | 332 | 5.35e-85 | 258 |
MS.gene48746.t1 | MTR_5g083860 | 46.809 | 282 | 138 | 4 | 1 | 277 | 51 | 325 | 1.38e-83 | 254 |
MS.gene48746.t1 | MTR_4g122640 | 44.840 | 281 | 149 | 4 | 1 | 277 | 58 | 336 | 7.08e-82 | 250 |
MS.gene48746.t1 | MTR_3g466200 | 45.936 | 283 | 140 | 5 | 1 | 277 | 45 | 320 | 8.77e-82 | 249 |
MS.gene48746.t1 | MTR_2g029740 | 45.035 | 282 | 150 | 3 | 1 | 277 | 49 | 330 | 1.46e-81 | 250 |
MS.gene48746.t1 | MTR_5g074970 | 46.479 | 284 | 138 | 5 | 1 | 277 | 50 | 326 | 1.72e-81 | 249 |
MS.gene48746.t1 | MTR_5g074860 | 48.561 | 278 | 129 | 5 | 4 | 274 | 52 | 322 | 2.81e-81 | 248 |
MS.gene48746.t1 | MTR_7g093370 | 44.014 | 284 | 153 | 4 | 1 | 278 | 89 | 372 | 3.50e-81 | 250 |
MS.gene48746.t1 | MTR_4g125940 | 45.583 | 283 | 145 | 4 | 3 | 278 | 50 | 330 | 4.89e-81 | 248 |
MS.gene48746.t1 | MTR_1g022970 | 46.454 | 282 | 146 | 3 | 1 | 277 | 66 | 347 | 2.58e-80 | 247 |
MS.gene48746.t1 | MTR_4g125940 | 45.290 | 276 | 142 | 4 | 10 | 278 | 2 | 275 | 9.07e-80 | 243 |
MS.gene48746.t1 | MTR_2g084010 | 46.619 | 281 | 139 | 4 | 1 | 277 | 45 | 318 | 9.67e-80 | 244 |
MS.gene48746.t1 | MTR_1g101830 | 46.909 | 275 | 143 | 3 | 4 | 277 | 50 | 322 | 1.36e-79 | 244 |
MS.gene48746.t1 | MTR_4g029170 | 47.518 | 282 | 136 | 5 | 1 | 277 | 47 | 321 | 1.79e-79 | 244 |
MS.gene48746.t1 | MTR_2g084080 | 45.357 | 280 | 143 | 3 | 1 | 277 | 45 | 317 | 2.90e-79 | 243 |
MS.gene48746.t1 | MTR_2g029800 | 44.170 | 283 | 153 | 3 | 1 | 278 | 49 | 331 | 3.65e-79 | 244 |
MS.gene48746.t1 | MTR_3g094670 | 45.645 | 287 | 134 | 4 | 1 | 277 | 48 | 322 | 3.73e-79 | 243 |
MS.gene48746.t1 | MTR_3g072190 | 48.249 | 257 | 123 | 3 | 24 | 277 | 2 | 251 | 4.21e-79 | 240 |
MS.gene48746.t1 | MTR_2g084020 | 45.552 | 281 | 142 | 4 | 1 | 277 | 45 | 318 | 4.23e-79 | 243 |
MS.gene48746.t1 | MTR_7g026990 | 44.643 | 280 | 146 | 2 | 1 | 278 | 51 | 323 | 7.36e-79 | 242 |
MS.gene48746.t1 | MTR_4g029180 | 47.872 | 282 | 135 | 5 | 1 | 277 | 47 | 321 | 8.99e-79 | 242 |
MS.gene48746.t1 | MTR_5g049280 | 44.251 | 287 | 150 | 5 | 1 | 278 | 53 | 338 | 2.76e-78 | 241 |
MS.gene48746.t1 | MTR_2g029750 | 43.617 | 282 | 154 | 3 | 1 | 277 | 49 | 330 | 4.35e-78 | 241 |
MS.gene48746.t1 | MTR_4g083710 | 45.423 | 284 | 142 | 5 | 1 | 277 | 47 | 324 | 5.12e-78 | 240 |
MS.gene48746.t1 | MTR_5g074760 | 46.479 | 284 | 138 | 5 | 1 | 277 | 45 | 321 | 2.34e-77 | 238 |
MS.gene48746.t1 | MTR_5g014100 | 44.561 | 285 | 145 | 5 | 4 | 277 | 49 | 331 | 2.88e-77 | 238 |
MS.gene48746.t1 | MTR_2g084000 | 44.128 | 281 | 146 | 4 | 1 | 277 | 46 | 319 | 3.72e-77 | 238 |
MS.gene48746.t1 | MTR_2g084110 | 45.907 | 281 | 140 | 5 | 1 | 277 | 45 | 317 | 4.69e-77 | 238 |
MS.gene48746.t1 | MTR_7g072510 | 45.000 | 280 | 144 | 3 | 1 | 277 | 40 | 312 | 1.29e-76 | 236 |
MS.gene48746.t1 | MTR_2g028980 | 44.364 | 275 | 148 | 3 | 8 | 277 | 56 | 330 | 1.92e-76 | 237 |
MS.gene48746.t1 | MTR_5g074740 | 46.127 | 284 | 139 | 5 | 1 | 277 | 45 | 321 | 1.94e-76 | 236 |
MS.gene48746.t1 | MTR_3g094630 | 46.099 | 282 | 140 | 4 | 1 | 277 | 48 | 322 | 5.99e-76 | 235 |
MS.gene48746.t1 | MTR_4g029200 | 44.043 | 277 | 145 | 3 | 4 | 277 | 69 | 338 | 1.37e-75 | 234 |
MS.gene48746.t1 | MTR_2g084090 | 43.060 | 281 | 149 | 4 | 1 | 277 | 45 | 318 | 2.17e-75 | 233 |
MS.gene48746.t1 | MTR_2g029560 | 42.349 | 281 | 157 | 3 | 3 | 278 | 46 | 326 | 4.37e-75 | 233 |
MS.gene48746.t1 | MTR_5g017850 | 44.604 | 278 | 149 | 3 | 4 | 277 | 50 | 326 | 6.86e-75 | 232 |
MS.gene48746.t1 | MTR_1g054205 | 41.197 | 284 | 161 | 4 | 1 | 278 | 44 | 327 | 7.95e-75 | 232 |
MS.gene48746.t1 | MTR_5g074710 | 45.070 | 284 | 142 | 5 | 1 | 277 | 45 | 321 | 1.10e-74 | 232 |
MS.gene48746.t1 | MTR_3g466180 | 46.931 | 277 | 137 | 3 | 4 | 277 | 54 | 323 | 1.40e-74 | 231 |
MS.gene48746.t1 | MTR_2g029910 | 43.682 | 277 | 150 | 4 | 8 | 278 | 57 | 333 | 2.40e-74 | 232 |
MS.gene48746.t1 | MTR_5g017860 | 43.525 | 278 | 152 | 3 | 4 | 277 | 50 | 326 | 3.45e-74 | 230 |
MS.gene48746.t1 | MTR_2g029860 | 42.391 | 276 | 154 | 3 | 8 | 278 | 56 | 331 | 2.25e-73 | 229 |
MS.gene48746.t1 | MTR_4g074995 | 44.014 | 284 | 133 | 6 | 1 | 277 | 44 | 308 | 4.54e-73 | 227 |
MS.gene48746.t1 | MTR_7g072480 | 45.487 | 277 | 141 | 3 | 4 | 277 | 47 | 316 | 4.75e-73 | 227 |
MS.gene48746.t1 | MTR_2g029820 | 41.343 | 283 | 161 | 3 | 1 | 278 | 49 | 331 | 1.45e-72 | 227 |
MS.gene48746.t1 | MTR_2g029815 | 41.343 | 283 | 161 | 3 | 1 | 278 | 49 | 331 | 2.48e-72 | 226 |
MS.gene48746.t1 | MTR_2g029850 | 42.049 | 283 | 159 | 3 | 1 | 278 | 49 | 331 | 4.50e-72 | 226 |
MS.gene48746.t1 | MTR_4g074990 | 43.110 | 283 | 134 | 5 | 1 | 277 | 44 | 305 | 9.29e-72 | 224 |
MS.gene48746.t1 | MTR_1g115900 | 41.869 | 289 | 154 | 5 | 1 | 283 | 47 | 327 | 1.24e-71 | 224 |
MS.gene48746.t1 | MTR_8g075100 | 43.071 | 267 | 145 | 5 | 13 | 277 | 58 | 319 | 2.53e-71 | 223 |
MS.gene48746.t1 | MTR_3g467600 | 43.860 | 285 | 145 | 6 | 1 | 277 | 47 | 324 | 3.07e-71 | 223 |
MS.gene48746.t1 | MTR_2g029730 | 42.391 | 276 | 154 | 3 | 8 | 278 | 52 | 327 | 3.92e-71 | 223 |
MS.gene48746.t1 | MTR_4g029190 | 41.844 | 282 | 152 | 4 | 1 | 277 | 66 | 340 | 5.21e-71 | 223 |
MS.gene48746.t1 | MTR_2g029830 | 41.606 | 274 | 155 | 3 | 10 | 278 | 57 | 330 | 1.32e-70 | 222 |
MS.gene48746.t1 | MTR_0155s0040 | 41.935 | 279 | 150 | 5 | 1 | 277 | 47 | 315 | 2.11e-70 | 220 |
MS.gene48746.t1 | MTR_5g022870 | 42.909 | 275 | 152 | 4 | 4 | 277 | 46 | 316 | 2.40e-70 | 220 |
MS.gene48746.t1 | MTR_1g025980 | 41.667 | 276 | 157 | 4 | 1 | 275 | 44 | 316 | 3.19e-70 | 220 |
MS.gene48746.t1 | MTR_1g077000 | 43.011 | 279 | 147 | 5 | 1 | 277 | 59 | 327 | 1.24e-68 | 216 |
MS.gene48746.t1 | MTR_3g092990 | 39.716 | 282 | 166 | 3 | 1 | 278 | 46 | 327 | 5.79e-67 | 212 |
MS.gene48746.t1 | MTR_4g031040 | 63.218 | 174 | 21 | 2 | 40 | 213 | 1 | 131 | 2.49e-66 | 204 |
MS.gene48746.t1 | MTR_7g029030 | 42.045 | 264 | 144 | 5 | 14 | 273 | 58 | 316 | 1.18e-64 | 206 |
MS.gene48746.t1 | MTR_4g046713 | 39.927 | 273 | 159 | 4 | 9 | 277 | 55 | 326 | 1.43e-63 | 203 |
MS.gene48746.t1 | MTR_7g086820 | 38.596 | 285 | 155 | 6 | 1 | 277 | 40 | 312 | 2.18e-63 | 202 |
MS.gene48746.t1 | MTR_4g133800 | 40.364 | 275 | 152 | 7 | 7 | 277 | 67 | 333 | 3.68e-63 | 202 |
MS.gene48746.t1 | MTR_4g087965 | 41.696 | 283 | 141 | 8 | 7 | 273 | 68 | 342 | 7.51e-63 | 202 |
MS.gene48746.t1 | MTR_2g029830 | 40.467 | 257 | 148 | 3 | 27 | 278 | 6 | 262 | 1.55e-62 | 199 |
MS.gene48746.t1 | MTR_1g009750 | 40.370 | 270 | 154 | 5 | 14 | 277 | 60 | 328 | 1.99e-62 | 200 |
MS.gene48746.t1 | MTR_4g074980 | 39.785 | 279 | 137 | 6 | 1 | 277 | 45 | 294 | 1.08e-61 | 197 |
MS.gene48746.t1 | MTR_7g107520 | 38.971 | 272 | 159 | 5 | 9 | 277 | 53 | 320 | 1.17e-60 | 196 |
MS.gene48746.t1 | MTR_4g074980 | 46.047 | 215 | 106 | 3 | 1 | 211 | 45 | 253 | 1.66e-60 | 193 |
MS.gene48746.t1 | MTR_2g088770 | 40.146 | 274 | 157 | 6 | 9 | 277 | 54 | 325 | 2.17e-60 | 195 |
MS.gene48746.t1 | MTR_4g132490 | 36.029 | 272 | 168 | 3 | 10 | 277 | 58 | 327 | 1.21e-59 | 193 |
MS.gene48746.t1 | MTR_5g016010 | 37.011 | 281 | 171 | 4 | 1 | 275 | 47 | 327 | 1.45e-59 | 193 |
MS.gene48746.t1 | MTR_5g074860 | 41.007 | 278 | 111 | 5 | 4 | 274 | 52 | 283 | 1.59e-59 | 191 |
MS.gene48746.t1 | MTR_2g437770 | 40.741 | 270 | 147 | 7 | 13 | 278 | 82 | 342 | 3.56e-59 | 192 |
MS.gene48746.t1 | MTR_1g086320 | 40.845 | 284 | 161 | 5 | 1 | 277 | 50 | 333 | 1.33e-58 | 191 |
MS.gene48746.t1 | MTR_7g086870 | 37.091 | 275 | 148 | 6 | 13 | 278 | 54 | 312 | 2.08e-58 | 189 |
MS.gene48746.t1 | MTR_1g038680 | 40.426 | 282 | 161 | 6 | 3 | 277 | 51 | 332 | 2.38e-57 | 187 |
MS.gene48746.t1 | MTR_3g092990 | 39.844 | 256 | 150 | 3 | 27 | 278 | 61 | 316 | 3.04e-57 | 187 |
MS.gene48746.t1 | MTR_6g043460 | 38.806 | 268 | 150 | 7 | 15 | 277 | 70 | 328 | 1.47e-56 | 186 |
MS.gene48746.t1 | MTR_0286s0010 | 38.571 | 280 | 160 | 7 | 6 | 277 | 59 | 334 | 3.80e-56 | 184 |
MS.gene48746.t1 | MTR_6g008075 | 38.571 | 280 | 160 | 7 | 6 | 277 | 59 | 334 | 3.80e-56 | 184 |
MS.gene48746.t1 | MTR_8g062780 | 38.298 | 282 | 163 | 4 | 9 | 282 | 51 | 329 | 4.03e-56 | 184 |
MS.gene48746.t1 | MTR_5g033470 | 38.571 | 280 | 158 | 7 | 9 | 277 | 101 | 377 | 8.04e-56 | 185 |
MS.gene48746.t1 | MTR_2g008710 | 39.259 | 270 | 152 | 6 | 15 | 277 | 61 | 325 | 8.27e-56 | 183 |
MS.gene48746.t1 | MTR_1g086490 | 39.519 | 291 | 162 | 5 | 1 | 277 | 50 | 340 | 8.10e-55 | 181 |
MS.gene48746.t1 | MTR_1g090760 | 36.900 | 271 | 165 | 5 | 9 | 273 | 56 | 326 | 1.25e-54 | 181 |
MS.gene48746.t1 | MTR_4g114210 | 38.628 | 277 | 153 | 6 | 7 | 273 | 47 | 316 | 2.39e-54 | 179 |
MS.gene48746.t1 | MTR_6g043280 | 36.879 | 282 | 165 | 7 | 1 | 278 | 61 | 333 | 4.87e-54 | 179 |
MS.gene48746.t1 | MTR_2g099175 | 35.766 | 274 | 163 | 5 | 12 | 277 | 67 | 335 | 1.89e-53 | 177 |
MS.gene48746.t1 | MTR_4g127670 | 36.996 | 273 | 163 | 5 | 11 | 277 | 54 | 323 | 1.96e-53 | 177 |
MS.gene48746.t1 | MTR_6g027440 | 36.000 | 275 | 169 | 4 | 7 | 279 | 47 | 316 | 3.18e-53 | 176 |
MS.gene48746.t1 | MTR_6g043240 | 37.201 | 293 | 163 | 9 | 1 | 284 | 58 | 338 | 5.77e-53 | 177 |
MS.gene48746.t1 | MTR_2g067440 | 36.177 | 293 | 152 | 6 | 14 | 273 | 93 | 383 | 3.29e-51 | 173 |
MS.gene48746.t1 | MTR_1g009750 | 36.900 | 271 | 151 | 6 | 11 | 277 | 57 | 311 | 3.37e-51 | 171 |
MS.gene48746.t1 | MTR_2g077990 | 36.949 | 295 | 150 | 6 | 14 | 273 | 109 | 402 | 8.78e-51 | 172 |
MS.gene48746.t1 | MTR_4g095450 | 35.424 | 271 | 164 | 5 | 11 | 275 | 57 | 322 | 1.02e-50 | 170 |
MS.gene48746.t1 | MTR_1g066640 | 35.055 | 271 | 164 | 4 | 14 | 278 | 60 | 324 | 3.86e-50 | 169 |
MS.gene48746.t1 | MTR_1g066710 | 34.307 | 274 | 168 | 5 | 11 | 278 | 57 | 324 | 1.11e-49 | 167 |
MS.gene48746.t1 | MTR_1g066380 | 34.686 | 271 | 165 | 4 | 14 | 278 | 60 | 324 | 1.56e-49 | 167 |
MS.gene48746.t1 | MTR_1g066680 | 34.643 | 280 | 171 | 4 | 5 | 278 | 50 | 323 | 2.29e-49 | 166 |
MS.gene48746.t1 | MTR_2g078610 | 36.271 | 295 | 152 | 6 | 14 | 273 | 109 | 402 | 5.56e-49 | 168 |
MS.gene48746.t1 | MTR_2g078280 | 36.299 | 281 | 145 | 5 | 14 | 261 | 109 | 388 | 8.60e-48 | 164 |
MS.gene48746.t1 | MTR_4g132110 | 33.213 | 277 | 173 | 4 | 7 | 277 | 58 | 328 | 1.16e-47 | 162 |
MS.gene48746.t1 | MTR_4g132110 | 32.624 | 282 | 173 | 5 | 7 | 277 | 58 | 333 | 2.16e-45 | 157 |
MS.gene48746.t1 | MTR_2g008730 | 38.017 | 242 | 141 | 5 | 43 | 277 | 62 | 301 | 2.80e-45 | 155 |
MS.gene48746.t1 | MTR_1g066380 | 33.462 | 260 | 161 | 4 | 25 | 278 | 3 | 256 | 1.37e-44 | 152 |
MS.gene48746.t1 | MTR_3g072210 | 44.503 | 191 | 94 | 4 | 92 | 277 | 55 | 238 | 7.99e-44 | 149 |
MS.gene48746.t1 | MTR_2g008160 | 35.439 | 285 | 171 | 7 | 1 | 277 | 44 | 323 | 9.34e-44 | 152 |
MS.gene48746.t1 | MTR_2g067450 | 35.316 | 269 | 148 | 8 | 20 | 273 | 49 | 306 | 7.98e-42 | 147 |
MS.gene48746.t1 | MTR_5g074700 | 39.738 | 229 | 114 | 6 | 54 | 277 | 5 | 214 | 1.29e-41 | 143 |
MS.gene48746.t1 | MTR_7g072490 | 38.034 | 234 | 85 | 5 | 27 | 260 | 2 | 175 | 3.09e-39 | 137 |
MS.gene48746.t1 | MTR_3g105790 | 33.333 | 279 | 169 | 8 | 8 | 277 | 52 | 322 | 5.32e-39 | 139 |
MS.gene48746.t1 | MTR_0147s0010 | 30.903 | 288 | 162 | 6 | 9 | 273 | 105 | 378 | 6.51e-36 | 132 |
MS.gene48746.t1 | MTR_2g029880 | 37.500 | 192 | 103 | 4 | 93 | 278 | 9 | 189 | 1.99e-35 | 127 |
MS.gene48746.t1 | MTR_3g072260 | 62.353 | 85 | 32 | 0 | 4 | 88 | 49 | 133 | 6.93e-32 | 115 |
MS.gene48746.t1 | MTR_2g008160 | 31.228 | 285 | 148 | 7 | 1 | 277 | 44 | 288 | 2.24e-31 | 119 |
MS.gene48746.t1 | MTR_3g105790 | 32.479 | 234 | 147 | 6 | 52 | 277 | 16 | 246 | 2.15e-30 | 115 |
MS.gene48746.t1 | MTR_2g008160 | 40.000 | 150 | 86 | 3 | 1 | 150 | 44 | 189 | 5.10e-29 | 110 |
MS.gene48746.t1 | MTR_2g077980 | 30.249 | 281 | 146 | 10 | 43 | 278 | 11 | 286 | 1.32e-24 | 100 |
MS.gene48746.t1 | MTR_7g086790 | 33.508 | 191 | 106 | 4 | 28 | 218 | 17 | 186 | 2.80e-24 | 97.4 |
MS.gene48746.t1 | MTR_2g078560 | 29.730 | 222 | 122 | 4 | 86 | 273 | 95 | 316 | 6.32e-21 | 91.3 |
MS.gene48746.t1 | MTR_5g058120 | 33.742 | 163 | 94 | 4 | 114 | 273 | 4 | 155 | 1.84e-20 | 88.6 |
MS.gene48746.t1 | MTR_3g462850 | 37.762 | 143 | 79 | 5 | 145 | 278 | 9 | 150 | 3.30e-20 | 85.5 |
MS.gene48746.t1 | MTR_6g048160 | 54.930 | 71 | 28 | 2 | 20 | 90 | 22 | 88 | 7.71e-20 | 82.8 |
MS.gene48746.t1 | MTR_4g114220 | 45.238 | 84 | 36 | 2 | 7 | 90 | 29 | 102 | 1.10e-16 | 75.9 |
MS.gene48746.t1 | MTR_1g098320 | 46.154 | 78 | 40 | 1 | 202 | 277 | 47 | 124 | 1.05e-15 | 73.2 |
MS.gene48746.t1 | MTR_3g088160 | 30.412 | 194 | 110 | 4 | 74 | 261 | 180 | 354 | 3.66e-15 | 75.5 |
MS.gene48746.t1 | MTR_3g088160 | 30.412 | 194 | 110 | 4 | 74 | 261 | 180 | 354 | 4.78e-15 | 75.5 |
MS.gene48746.t1 | MTR_5g022510 | 28.436 | 211 | 104 | 4 | 55 | 261 | 50 | 217 | 9.28e-15 | 72.8 |
MS.gene48746.t1 | MTR_5g022510 | 28.910 | 211 | 103 | 5 | 55 | 261 | 75 | 242 | 1.24e-14 | 72.8 |
MS.gene48746.t1 | MTR_3g107060 | 32.903 | 155 | 88 | 5 | 1 | 151 | 96 | 238 | 1.04e-11 | 64.7 |
MS.gene48746.t1 | MTR_5g074770 | 37.079 | 89 | 52 | 2 | 190 | 274 | 18 | 106 | 1.29e-11 | 60.8 |
MS.gene48746.t1 | MTR_7g086785 | 43.056 | 72 | 40 | 1 | 27 | 98 | 4 | 74 | 1.68e-11 | 61.2 |
MS.gene48746.t1 | MTR_1g089005 | 39.130 | 92 | 49 | 2 | 8 | 93 | 42 | 132 | 2.09e-11 | 61.6 |
MS.gene48746.t1 | MTR_7g086810 | 30.769 | 117 | 54 | 3 | 1 | 117 | 26 | 115 | 6.80e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48746.t1 | AT2G22420 | 77.895 | 285 | 63 | 0 | 1 | 285 | 43 | 327 | 1.12e-169 | 473 |
MS.gene48746.t1 | AT5G19890 | 50.896 | 279 | 128 | 4 | 4 | 277 | 53 | 327 | 1.78e-91 | 275 |
MS.gene48746.t1 | AT4G36430 | 48.214 | 280 | 141 | 3 | 3 | 278 | 52 | 331 | 6.05e-88 | 266 |
MS.gene48746.t1 | AT5G66390 | 47.518 | 282 | 144 | 3 | 3 | 280 | 55 | 336 | 2.01e-86 | 262 |
MS.gene48746.t1 | AT2G18150 | 47.312 | 279 | 143 | 3 | 3 | 277 | 58 | 336 | 6.33e-86 | 261 |
MS.gene48746.t1 | AT4G16270 | 47.500 | 280 | 143 | 4 | 1 | 277 | 70 | 348 | 5.81e-85 | 259 |
MS.gene48746.t1 | AT5G06730 | 44.170 | 283 | 153 | 3 | 1 | 278 | 53 | 335 | 1.20e-83 | 256 |
MS.gene48746.t1 | AT5G06720 | 45.583 | 283 | 149 | 3 | 1 | 278 | 52 | 334 | 2.44e-83 | 254 |
MS.gene48746.t1 | AT2G18140 | 47.670 | 279 | 142 | 3 | 3 | 277 | 57 | 335 | 5.85e-83 | 253 |
MS.gene48746.t1 | AT3G50990 | 44.803 | 279 | 150 | 3 | 3 | 277 | 63 | 341 | 6.78e-83 | 253 |
MS.gene48746.t1 | AT1G44970 | 46.454 | 282 | 146 | 3 | 1 | 277 | 65 | 346 | 3.15e-82 | 252 |
MS.gene48746.t1 | AT5G05340 | 45.520 | 279 | 138 | 4 | 1 | 273 | 50 | 320 | 3.18e-82 | 251 |
MS.gene48746.t1 | AT2G38380 | 46.953 | 279 | 142 | 4 | 5 | 277 | 55 | 333 | 6.04e-81 | 248 |
MS.gene48746.t1 | AT4G08770 | 46.099 | 282 | 145 | 4 | 4 | 278 | 47 | 328 | 1.14e-80 | 248 |
MS.gene48746.t1 | AT2G38390 | 46.377 | 276 | 142 | 4 | 8 | 277 | 58 | 333 | 1.16e-80 | 248 |
MS.gene48746.t1 | AT5G58400 | 45.583 | 283 | 141 | 5 | 1 | 277 | 50 | 325 | 1.78e-79 | 244 |
MS.gene48746.t1 | AT4G08780 | 45.035 | 282 | 148 | 4 | 4 | 278 | 47 | 328 | 3.04e-79 | 244 |
MS.gene48746.t1 | AT5G58390 | 44.928 | 276 | 139 | 5 | 8 | 277 | 48 | 316 | 4.58e-78 | 240 |
MS.gene48746.t1 | AT1G14540 | 45.196 | 281 | 144 | 4 | 1 | 277 | 41 | 315 | 9.09e-78 | 239 |
MS.gene48746.t1 | AT3G49120 | 44.637 | 289 | 149 | 5 | 1 | 278 | 48 | 336 | 2.04e-77 | 239 |
MS.gene48746.t1 | AT3G32980 | 46.043 | 278 | 143 | 4 | 8 | 278 | 58 | 335 | 3.22e-76 | 236 |
MS.gene48746.t1 | AT3G49110 | 45.324 | 278 | 145 | 4 | 8 | 278 | 60 | 337 | 4.11e-76 | 236 |
MS.gene48746.t1 | AT5G19880 | 46.316 | 285 | 145 | 5 | 1 | 277 | 45 | 329 | 1.05e-75 | 234 |
MS.gene48746.t1 | AT1G49570 | 45.126 | 277 | 146 | 4 | 3 | 273 | 70 | 346 | 7.24e-75 | 233 |
MS.gene48746.t1 | AT1G68850 | 41.724 | 290 | 154 | 5 | 1 | 278 | 50 | 336 | 1.82e-73 | 229 |
MS.gene48746.t1 | AT2G35380 | 45.230 | 283 | 146 | 5 | 4 | 277 | 53 | 335 | 3.06e-73 | 228 |
MS.gene48746.t1 | AT1G14550 | 42.908 | 282 | 150 | 5 | 1 | 277 | 46 | 321 | 1.89e-71 | 223 |
MS.gene48746.t1 | AT5G51890 | 42.294 | 279 | 157 | 3 | 1 | 277 | 46 | 322 | 2.47e-71 | 223 |
MS.gene48746.t1 | AT5G42180 | 42.909 | 275 | 153 | 4 | 1 | 274 | 43 | 314 | 8.68e-71 | 221 |
MS.gene48746.t1 | AT4G33420 | 44.803 | 279 | 142 | 5 | 1 | 277 | 57 | 325 | 1.32e-69 | 219 |
MS.gene48746.t1 | AT4G33420 | 44.803 | 279 | 142 | 5 | 1 | 277 | 104 | 372 | 4.10e-69 | 219 |
MS.gene48746.t1 | AT5G17820 | 41.912 | 272 | 145 | 6 | 9 | 277 | 52 | 313 | 4.51e-68 | 214 |
MS.gene48746.t1 | AT5G17820 | 41.912 | 272 | 145 | 6 | 9 | 277 | 105 | 366 | 4.48e-67 | 214 |
MS.gene48746.t1 | AT1G71695 | 42.268 | 291 | 154 | 7 | 1 | 284 | 64 | 347 | 5.06e-67 | 213 |
MS.gene48746.t1 | AT3G03670 | 39.437 | 284 | 160 | 4 | 1 | 277 | 43 | 321 | 1.17e-66 | 211 |
MS.gene48746.t1 | AT3G49960 | 38.163 | 283 | 169 | 4 | 1 | 277 | 47 | 329 | 5.58e-63 | 202 |
MS.gene48746.t1 | AT5G15180 | 41.786 | 280 | 149 | 8 | 6 | 277 | 56 | 329 | 9.09e-62 | 199 |
MS.gene48746.t1 | AT1G05260 | 40.364 | 275 | 157 | 6 | 9 | 278 | 54 | 326 | 6.06e-61 | 196 |
MS.gene48746.t1 | AT5G67400 | 39.194 | 273 | 160 | 4 | 11 | 277 | 57 | 329 | 1.31e-60 | 196 |
MS.gene48746.t1 | AT3G01190 | 41.993 | 281 | 148 | 8 | 4 | 277 | 49 | 321 | 7.78e-60 | 194 |
MS.gene48746.t1 | AT5G64120 | 38.828 | 273 | 158 | 6 | 8 | 277 | 62 | 328 | 8.20e-60 | 194 |
MS.gene48746.t1 | AT4G11290 | 40.580 | 276 | 155 | 6 | 9 | 277 | 53 | 326 | 1.67e-59 | 193 |
MS.gene48746.t1 | AT4G37520 | 35.689 | 283 | 176 | 4 | 1 | 277 | 47 | 329 | 2.15e-59 | 192 |
MS.gene48746.t1 | AT2G34060 | 41.219 | 279 | 148 | 9 | 9 | 275 | 70 | 344 | 4.31e-59 | 192 |
MS.gene48746.t1 | AT4G37530 | 36.749 | 283 | 173 | 4 | 1 | 277 | 47 | 329 | 5.25e-59 | 192 |
MS.gene48746.t1 | AT1G05240 | 39.350 | 277 | 159 | 6 | 7 | 277 | 52 | 325 | 1.71e-58 | 190 |
MS.gene48746.t1 | AT1G05250 | 39.350 | 277 | 159 | 6 | 7 | 277 | 52 | 325 | 1.71e-58 | 190 |
MS.gene48746.t1 | AT5G39580 | 38.686 | 274 | 158 | 7 | 8 | 277 | 52 | 319 | 2.91e-58 | 189 |
MS.gene48746.t1 | AT5G40150 | 38.267 | 277 | 161 | 4 | 6 | 277 | 57 | 328 | 6.49e-57 | 186 |
MS.gene48746.t1 | AT3G28200 | 38.129 | 278 | 159 | 5 | 6 | 277 | 46 | 316 | 9.73e-57 | 185 |
MS.gene48746.t1 | AT2G41480 | 39.209 | 278 | 156 | 7 | 8 | 277 | 56 | 328 | 1.53e-56 | 185 |
MS.gene48746.t1 | AT1G24110 | 37.226 | 274 | 164 | 5 | 6 | 273 | 47 | 318 | 1.71e-56 | 185 |
MS.gene48746.t1 | AT4G37520 | 34.982 | 283 | 175 | 5 | 1 | 277 | 47 | 326 | 1.82e-56 | 185 |
MS.gene48746.t1 | AT2G35380 | 43.320 | 247 | 131 | 5 | 40 | 277 | 1 | 247 | 2.67e-56 | 182 |
MS.gene48746.t1 | AT4G30170 | 35.740 | 277 | 160 | 6 | 11 | 277 | 57 | 325 | 5.58e-56 | 184 |
MS.gene48746.t1 | AT3G21770 | 39.130 | 276 | 159 | 7 | 9 | 278 | 57 | 329 | 5.64e-56 | 184 |
MS.gene48746.t1 | AT1G30870 | 38.376 | 271 | 153 | 7 | 14 | 278 | 84 | 346 | 2.11e-55 | 183 |
MS.gene48746.t1 | AT2G18980 | 35.714 | 280 | 156 | 5 | 11 | 277 | 55 | 323 | 1.17e-54 | 180 |
MS.gene48746.t1 | AT2G39040 | 38.163 | 283 | 162 | 8 | 6 | 277 | 70 | 350 | 2.05e-54 | 180 |
MS.gene48746.t1 | AT4G17690 | 38.462 | 273 | 156 | 6 | 7 | 273 | 52 | 318 | 3.10e-54 | 179 |
MS.gene48746.t1 | AT4G26010 | 39.630 | 270 | 146 | 7 | 12 | 277 | 53 | 309 | 1.45e-53 | 177 |
MS.gene48746.t1 | AT5G14130 | 35.252 | 278 | 154 | 5 | 14 | 277 | 65 | 330 | 1.66e-53 | 177 |
MS.gene48746.t1 | AT4G26010 | 39.630 | 270 | 146 | 7 | 12 | 277 | 81 | 337 | 1.74e-53 | 177 |
MS.gene48746.t1 | AT5G64110 | 38.129 | 278 | 160 | 6 | 6 | 277 | 59 | 330 | 2.08e-53 | 177 |
MS.gene48746.t1 | AT4G33870 | 34.628 | 309 | 157 | 4 | 9 | 276 | 96 | 400 | 2.48e-53 | 179 |
MS.gene48746.t1 | AT5G64100 | 37.143 | 280 | 152 | 8 | 9 | 277 | 65 | 331 | 2.98e-53 | 177 |
MS.gene48746.t1 | AT5G14130 | 35.252 | 278 | 154 | 5 | 14 | 277 | 106 | 371 | 4.34e-53 | 177 |
MS.gene48746.t1 | AT4G21960 | 33.574 | 277 | 172 | 4 | 7 | 277 | 57 | 327 | 1.35e-52 | 175 |
MS.gene48746.t1 | AT4G25980 | 36.525 | 282 | 167 | 6 | 4 | 277 | 49 | 326 | 3.91e-51 | 171 |
MS.gene48746.t1 | AT3G17070 | 35.231 | 281 | 171 | 4 | 1 | 273 | 58 | 335 | 6.45e-51 | 171 |
MS.gene48746.t1 | AT5G22410 | 36.986 | 292 | 158 | 9 | 3 | 280 | 50 | 329 | 8.25e-51 | 171 |
MS.gene48746.t1 | AT1G77100 | 37.241 | 290 | 155 | 9 | 1 | 277 | 44 | 319 | 9.10e-51 | 170 |
MS.gene48746.t1 | AT4G37530 | 38.627 | 233 | 139 | 3 | 1 | 229 | 47 | 279 | 9.94e-50 | 166 |
MS.gene48746.t1 | AT2G43480 | 35.379 | 277 | 164 | 6 | 10 | 277 | 65 | 335 | 2.37e-49 | 167 |
MS.gene48746.t1 | AT1G34510 | 36.727 | 275 | 147 | 8 | 12 | 277 | 53 | 309 | 2.38e-49 | 166 |
MS.gene48746.t1 | AT5G47000 | 36.131 | 274 | 164 | 6 | 6 | 273 | 58 | 326 | 2.38e-49 | 167 |
MS.gene48746.t1 | AT2G37130 | 34.307 | 274 | 167 | 6 | 11 | 277 | 29 | 296 | 4.04e-48 | 162 |
MS.gene48746.t1 | AT2G37130 | 34.307 | 274 | 167 | 6 | 11 | 277 | 60 | 327 | 5.82e-48 | 163 |
MS.gene48746.t1 | AT5G24070 | 34.191 | 272 | 165 | 5 | 15 | 278 | 71 | 336 | 2.37e-47 | 162 |
MS.gene48746.t1 | AT2G24800 | 34.629 | 283 | 175 | 5 | 1 | 277 | 51 | 329 | 6.30e-47 | 160 |
MS.gene48746.t1 | AT4G31760 | 35.088 | 285 | 170 | 7 | 1 | 277 | 49 | 326 | 3.09e-45 | 156 |
MS.gene48746.t1 | AT3G17070 | 34.848 | 264 | 160 | 5 | 18 | 273 | 13 | 272 | 9.33e-45 | 153 |
MS.gene48746.t1 | AT5G39580 | 39.735 | 151 | 86 | 3 | 8 | 158 | 52 | 197 | 2.59e-30 | 114 |
MS.gene48746.t1 | AT4G25980 | 40.690 | 145 | 82 | 3 | 4 | 148 | 94 | 234 | 4.87e-27 | 107 |
MS.gene48746.t1 | AT2G24800 | 37.584 | 149 | 89 | 2 | 1 | 149 | 51 | 195 | 6.40e-23 | 95.1 |
MS.gene48746.t1 | AT1G77490 | 30.928 | 194 | 109 | 5 | 74 | 261 | 165 | 339 | 5.80e-18 | 84.0 |
MS.gene48746.t1 | AT1G77490 | 30.928 | 194 | 109 | 5 | 74 | 261 | 165 | 339 | 5.83e-18 | 84.0 |
MS.gene48746.t1 | AT4G32320 | 29.084 | 251 | 127 | 8 | 13 | 258 | 115 | 319 | 2.38e-16 | 78.6 |
MS.gene48746.t1 | AT3G42570 | 40.000 | 95 | 56 | 1 | 53 | 146 | 53 | 147 | 8.94e-16 | 73.6 |
MS.gene48746.t1 | AT4G08390 | 29.592 | 196 | 109 | 6 | 74 | 261 | 186 | 360 | 5.82e-14 | 72.0 |
MS.gene48746.t1 | AT4G08390 | 29.592 | 196 | 109 | 6 | 74 | 261 | 186 | 360 | 5.82e-14 | 72.0 |
MS.gene48746.t1 | AT4G08390 | 29.592 | 196 | 109 | 6 | 74 | 261 | 186 | 360 | 5.82e-14 | 72.0 |
MS.gene48746.t1 | AT4G08390 | 29.592 | 196 | 109 | 6 | 74 | 261 | 185 | 359 | 6.19e-14 | 71.6 |
Find 60 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCACTAACCCCTTTGTCTT+AGG | 0.179333 | 4.4:+72823572 | None:intergenic |
CAACCAAGTCTTTGAAATAT+TGG | 0.210155 | 4.4:+72823639 | None:intergenic |
TTGTGCTGATATCATAATTA+TGG | 0.210247 | 4.4:-72824495 | MS.gene48746:CDS |
TGTTGAAGGGATGTTGAAAA+TGG | 0.280353 | 4.4:-72823510 | MS.gene48746:CDS |
TGACAGTGAGATTGAATCTT+TGG | 0.289658 | 4.4:+72823870 | None:intergenic |
ATAACAGAGGCAACACTTCT+TGG | 0.295424 | 4.4:+72825175 | None:intergenic |
AACCATGCTTGGAGAGAAAT+TGG | 0.296203 | 4.4:-72824606 | MS.gene48746:CDS |
CTTGCATTGGCTCTTGGACT+TGG | 0.306291 | 4.4:+72823911 | None:intergenic |
GGAGGTGAGGTTAGGAAGAT+TGG | 0.319221 | 4.4:-72823975 | MS.gene48746:CDS |
TCTGCATCTTGTGTTGAAAC+AGG | 0.387999 | 4.4:+72823414 | None:intergenic |
AGAGTGCTTGCATTGGCTCT+TGG | 0.404507 | 4.4:+72823905 | None:intergenic |
CCTAACCTCACCTCCCAATC+TGG | 0.410911 | 4.4:+72823983 | None:intergenic |
TTCACTTACCCTAAGACAAA+GGG | 0.425105 | 4.4:-72823581 | MS.gene48746:CDS |
AAAGACTTGGTTGGTGGAAG+AGG | 0.432566 | 4.4:-72823629 | MS.gene48746:CDS |
TCACTAACCCCTTTGTCTTA+GGG | 0.434656 | 4.4:+72823573 | None:intergenic |
CCGGTCGGCCTGGAGAGGTT+AGG | 0.438880 | 4.4:-72823475 | MS.gene48746:CDS |
CCAGATTGGGAGGTGAGGTT+AGG | 0.444088 | 4.4:-72823983 | MS.gene48746:CDS |
GATCTGCAGTCCGGTCGGCC+TGG | 0.446709 | 4.4:-72823485 | MS.gene48746:CDS |
TGCAGACAGGAGGACCAGAT+TGG | 0.458093 | 4.4:-72823997 | MS.gene48746:intron |
TTCTAGAGATGCTGTAGCAC+TGG | 0.460212 | 4.4:-72824471 | MS.gene48746:intron |
AAAGACCTTGTAGCACTCTC+AGG | 0.474322 | 4.4:-72823848 | MS.gene48746:CDS |
CAATTCCTCCTAACCTCTCC+AGG | 0.478911 | 4.4:+72823467 | None:intergenic |
GTTGAAGGGATGTTGAAAAT+GGG | 0.491299 | 4.4:-72823509 | MS.gene48746:CDS |
TTTCACTTACCCTAAGACAA+AGG | 0.494087 | 4.4:-72823582 | MS.gene48746:CDS |
AGCAGGATCAAGTGCAGGGT+CGG | 0.497906 | 4.4:+72823751 | None:intergenic |
CTAAAAGCAGGATCAAGTGC+AGG | 0.499939 | 4.4:+72823746 | None:intergenic |
GCAGACAGGAGGACCAGATT+GGG | 0.504736 | 4.4:-72823996 | MS.gene48746:intron |
CAATATTTCAAAGACTTGGT+TGG | 0.505374 | 4.4:-72823638 | MS.gene48746:CDS |
GCAGGATCAAGTGCAGGGTC+GGG | 0.507890 | 4.4:+72823752 | None:intergenic |
ATCATTTGAAGTTGTTGATG+AGG | 0.515377 | 4.4:-72824558 | MS.gene48746:CDS |
TAACCAATATTTCAAAGACT+TGG | 0.517663 | 4.4:-72823642 | MS.gene48746:CDS |
CCTAACCTCTCCAGGCCGAC+CGG | 0.519904 | 4.4:+72823475 | None:intergenic |
GATGATACACCAACCATGCT+TGG | 0.535946 | 4.4:-72824617 | MS.gene48746:CDS |
GATGTTGATCAAAATAAGAC+AGG | 0.536838 | 4.4:-72823695 | MS.gene48746:CDS |
TATTTCAAAGACTTGGTTGG+TGG | 0.545889 | 4.4:-72823635 | MS.gene48746:CDS |
ATCAATGAGAGTGCTTGCAT+TGG | 0.546114 | 4.4:+72823898 | None:intergenic |
AAATCACAGGAGTTGCATCA+AGG | 0.548807 | 4.4:+72823669 | None:intergenic |
GCTGTAGAGAAAGCTTGTCC+TGG | 0.549441 | 4.4:-72824527 | MS.gene48746:CDS |
CTCTCAGGATCTCACTCTAT+CGG | 0.551228 | 4.4:-72823833 | MS.gene48746:CDS |
AAAATGGGTGATCTGCAGTC+CGG | 0.560105 | 4.4:-72823494 | MS.gene48746:CDS |
TTTCGGCTATACAATCAATC+CGG | 0.568350 | 4.4:-72823785 | MS.gene48746:CDS |
AGCCAATTTCTCTCCAAGCA+TGG | 0.571093 | 4.4:+72824604 | None:intergenic |
TCAAGTTCTAGTCTAAAAGC+AGG | 0.579701 | 4.4:+72823734 | None:intergenic |
GGATCTCACTCTATCGGCCA+AGG | 0.583713 | 4.4:-72823827 | MS.gene48746:CDS |
GTCGGCCTGGAGAGGTTAGG+AGG | 0.583830 | 4.4:-72823472 | MS.gene48746:CDS |
GCAGTCCGGTCGGCCTGGAG+AGG | 0.585351 | 4.4:-72823480 | MS.gene48746:CDS |
TCAGCACAAGAAACAACTCC+AGG | 0.586737 | 4.4:+72824509 | None:intergenic |
TATTGGTTATCGAAAATCAC+AGG | 0.593232 | 4.4:+72823656 | None:intergenic |
CTATACAATCAATCCGGTAG+CGG | 0.596485 | 4.4:-72823779 | MS.gene48746:CDS |
AATTTCTCTCCAAGCATGGT+TGG | 0.597888 | 4.4:+72824608 | None:intergenic |
TTGAAACAGGACATTAGCGA+AGG | 0.610376 | 4.4:+72823427 | None:intergenic |
GAGATCCTGAGAGTGCTACA+AGG | 0.617824 | 4.4:+72823843 | None:intergenic |
CTAAGACAAAGGGGTTAGTG+AGG | 0.630521 | 4.4:-72823571 | MS.gene48746:CDS |
TGGGTGATCTGCAGTCCGGT+CGG | 0.630663 | 4.4:-72823490 | MS.gene48746:CDS |
GACAGGAGGACCAGATTGGG+AGG | 0.631702 | 4.4:-72823993 | MS.gene48746:CDS |
TAAAAGCAGGATCAAGTGCA+GGG | 0.654038 | 4.4:+72823747 | None:intergenic |
TCACTTACCCTAAGACAAAG+GGG | 0.662421 | 4.4:-72823580 | MS.gene48746:CDS |
GAGGACCAGATTGGGAGGTG+AGG | 0.674270 | 4.4:-72823988 | MS.gene48746:CDS |
TGAAACAGGACATTAGCGAA+GGG | 0.682912 | 4.4:+72823428 | None:intergenic |
AAATTGAAATCTCATAACAG+AGG | 0.697630 | 4.4:+72825162 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATAAATATTTTTGATG+TGG | + | chr4.4:72824478-72824497 | None:intergenic | 10.0% |
!!! | AAAATAAATATTTTTGATGT+GGG | + | chr4.4:72824477-72824496 | None:intergenic | 10.0% |
!!! | CATCAAAAATATTTATTTTT+TGG | - | chr4.4:72824478-72824497 | MS.gene48746:CDS | 10.0% |
!!! | AATTTTTAGATATGAAAAGT+TGG | - | chr4.4:72823663-72823682 | MS.gene48746:CDS | 15.0% |
!!! | AATAATACATCTTGTTTACA+TGG | + | chr4.4:72824531-72824550 | None:intergenic | 20.0% |
!!! | CTGAAAAGATAAAATTTTGA+TGG | + | chr4.4:72823503-72823522 | None:intergenic | 20.0% |
!!! | TTATTTGTTGAATTTGTGAA+GGG | - | chr4.4:72823931-72823950 | MS.gene48746:CDS | 20.0% |
!!! | TTTATTTGTTGAATTTGTGA+AGG | - | chr4.4:72823930-72823949 | MS.gene48746:CDS | 20.0% |
! | AAATTGAAATCTCATAACAG+AGG | + | chr4.4:72823434-72823453 | None:intergenic | 25.0% |
! | GAAATAGCCAAATTCAAATT+CGG | + | chr4.4:72823782-72823801 | None:intergenic | 25.0% |
! | GAATTTGAATTTGGCTATTT+CGG | - | chr4.4:72823781-72823800 | MS.gene48746:CDS | 25.0% |
! | TAACCAATATTTCAAAGACT+TGG | - | chr4.4:72824951-72824970 | MS.gene48746:intron | 25.0% |
! | TTGTTTACATGGACAAAATT+TGG | + | chr4.4:72824520-72824539 | None:intergenic | 25.0% |
!! | TATTTGTTGAATTTGTGAAG+GGG | - | chr4.4:72823932-72823951 | MS.gene48746:CDS | 25.0% |
!! | TTGTGCTGATATCATAATTA+TGG | - | chr4.4:72824098-72824117 | MS.gene48746:intron | 25.0% |
!!! | GATGTTTTTCAATCATGTTT+CGG | - | chr4.4:72824791-72824810 | MS.gene48746:intron | 25.0% |
!!! | TATTTTGATCAACATCTAGT+GGG | + | chr4.4:72824894-72824913 | None:intergenic | 25.0% |
!!! | TTATTTTGATCAACATCTAG+TGG | + | chr4.4:72824895-72824914 | None:intergenic | 25.0% |
!!! | TTTTCAAAGCATTTGTTGAA+GGG | - | chr4.4:72825070-72825089 | MS.gene48746:intron | 25.0% |
!!! | TTTTTCAAAGCATTTGTTGA+AGG | - | chr4.4:72825069-72825088 | MS.gene48746:intron | 25.0% |
AACATTTCACCCTTAGAAAA+CGG | + | chr4.4:72824330-72824349 | None:intergenic | 30.0% | |
ACAAAAACAGATATCACTAC+AGG | + | chr4.4:72824426-72824445 | None:intergenic | 30.0% | |
AGATATCTCAACAGTTAACA+AGG | - | chr4.4:72824239-72824258 | MS.gene48746:intron | 30.0% | |
CAAAAACAGATATCACTACA+GGG | + | chr4.4:72824425-72824444 | None:intergenic | 30.0% | |
CATAATCATTGATCTCCATA+GGG | - | chr4.4:72823730-72823749 | MS.gene48746:CDS | 30.0% | |
GATATCTCAACAGTTAACAA+GGG | - | chr4.4:72824240-72824259 | MS.gene48746:intron | 30.0% | |
GATGTTGATCAAAATAAGAC+AGG | - | chr4.4:72824898-72824917 | MS.gene48746:intron | 30.0% | |
GTAACCACAAAGTAGATATA+AGG | + | chr4.4:72823590-72823609 | None:intergenic | 30.0% | |
TACATGGACAAAATTTGGAA+AGG | + | chr4.4:72824515-72824534 | None:intergenic | 30.0% | |
TCATAATCATTGATCTCCAT+AGG | - | chr4.4:72823729-72823748 | MS.gene48746:CDS | 30.0% | |
TGAGAAAGCAGTAAGAAAAT+AGG | - | chr4.4:72824389-72824408 | MS.gene48746:intron | 30.0% | |
TGATCCTTATATCTACTTTG+TGG | - | chr4.4:72823583-72823602 | MS.gene48746:CDS | 30.0% | |
! | ATCATTTGAAGTTGTTGATG+AGG | - | chr4.4:72824035-72824054 | MS.gene48746:intron | 30.0% |
! | CAATATTTCAAAGACTTGGT+TGG | - | chr4.4:72824955-72824974 | MS.gene48746:intron | 30.0% |
! | TATTGGTTATCGAAAATCAC+AGG | + | chr4.4:72824940-72824959 | None:intergenic | 30.0% |
!! | CAACCAAGTCTTTGAAATAT+TGG | + | chr4.4:72824957-72824976 | None:intergenic | 30.0% |
!! | TGTTTACTTTTATTGCAGAC+AGG | - | chr4.4:72824583-72824602 | MS.gene48746:CDS | 30.0% |
!!! | TGATTTATGCCGTTTTCTAA+GGG | - | chr4.4:72824318-72824337 | MS.gene48746:intron | 30.0% |
!!! | TTGATTTATGCCGTTTTCTA+AGG | - | chr4.4:72824317-72824336 | MS.gene48746:intron | 30.0% |
ACTTCGACCGAATTTGAATT+TGG | - | chr4.4:72823772-72823791 | MS.gene48746:CDS | 35.0% | |
GATTGCTTGTTTCAGTTGTT+TGG | - | chr4.4:72823853-72823872 | MS.gene48746:CDS | 35.0% | |
GTTGAAGGGATGTTGAAAAT+GGG | - | chr4.4:72825084-72825103 | MS.gene48746:intron | 35.0% | |
TGACAGTGAGATTGAATCTT+TGG | + | chr4.4:72824726-72824745 | None:intergenic | 35.0% | |
TGATTGAAAAACATCGACCT+TGG | + | chr4.4:72824786-72824805 | None:intergenic | 35.0% | |
TGTTGAAGGGATGTTGAAAA+TGG | - | chr4.4:72825083-72825102 | MS.gene48746:intron | 35.0% | |
TTCACTTACCCTAAGACAAA+GGG | - | chr4.4:72825012-72825031 | MS.gene48746:intron | 35.0% | |
TTTCACTTACCCTAAGACAA+AGG | - | chr4.4:72825011-72825030 | MS.gene48746:intron | 35.0% | |
TTTCGGCTATACAATCAATC+CGG | - | chr4.4:72824808-72824827 | MS.gene48746:intron | 35.0% | |
! | TATTTCAAAGACTTGGTTGG+TGG | - | chr4.4:72824958-72824977 | MS.gene48746:intron | 35.0% |
! | TCAAGTTCTAGTCTAAAAGC+AGG | + | chr4.4:72824862-72824881 | None:intergenic | 35.0% |
!! | TTACTTTTATTGCAGACAGG+AGG | - | chr4.4:72824586-72824605 | MS.gene48746:CDS | 35.0% |
AAATCACAGGAGTTGCATCA+AGG | + | chr4.4:72824927-72824946 | None:intergenic | 40.0% | |
AACAAGCAATCGAGCTTAAG+TGG | + | chr4.4:72823844-72823863 | None:intergenic | 40.0% | |
AACCATGCTTGGAGAGAAAT+TGG | - | chr4.4:72823987-72824006 | MS.gene48746:CDS | 40.0% | |
AATCATTGATCTCCATAGGG+AGG | - | chr4.4:72823733-72823752 | MS.gene48746:CDS | 40.0% | |
AATTTCTCTCCAAGCATGGT+TGG | + | chr4.4:72823988-72824007 | None:intergenic | 40.0% | |
ATAACAGAGGCAACACTTCT+TGG | + | chr4.4:72823421-72823440 | None:intergenic | 40.0% | |
ATCATTGATCTCCATAGGGA+GGG | - | chr4.4:72823734-72823753 | MS.gene48746:CDS | 40.0% | |
ATTCAAATTCGGTCGAAGTC+TGG | + | chr4.4:72823771-72823790 | None:intergenic | 40.0% | |
CTATACAATCAATCCGGTAG+CGG | - | chr4.4:72824814-72824833 | MS.gene48746:intron | 40.0% | |
TAAAAGCAGGATCAAGTGCA+GGG | + | chr4.4:72824849-72824868 | None:intergenic | 40.0% | |
TCACTAACCCCTTTGTCTTA+GGG | + | chr4.4:72825023-72825042 | None:intergenic | 40.0% | |
TCACTTACCCTAAGACAAAG+GGG | - | chr4.4:72825013-72825032 | MS.gene48746:intron | 40.0% | |
TCTGCATCTTGTGTTGAAAC+AGG | + | chr4.4:72825182-72825201 | None:intergenic | 40.0% | |
TGAAACAGGACATTAGCGAA+GGG | + | chr4.4:72825168-72825187 | None:intergenic | 40.0% | |
TTGAAACAGGACATTAGCGA+AGG | + | chr4.4:72825169-72825188 | None:intergenic | 40.0% | |
!! | ATCAATGAGAGTGCTTGCAT+TGG | + | chr4.4:72824698-72824717 | None:intergenic | 40.0% |
AAAATGGGTGATCTGCAGTC+CGG | - | chr4.4:72825099-72825118 | MS.gene48746:intron | 45.0% | |
AAAGACCTTGTAGCACTCTC+AGG | - | chr4.4:72824745-72824764 | MS.gene48746:intron | 45.0% | |
AGCCAATTTCTCTCCAAGCA+TGG | + | chr4.4:72823992-72824011 | None:intergenic | 45.0% | |
CTAAAAGCAGGATCAAGTGC+AGG | + | chr4.4:72824850-72824869 | None:intergenic | 45.0% | |
CTCACTAACCCCTTTGTCTT+AGG | + | chr4.4:72825024-72825043 | None:intergenic | 45.0% | |
CTCTCAGGATCTCACTCTAT+CGG | - | chr4.4:72824760-72824779 | MS.gene48746:intron | 45.0% | |
GATGATACACCAACCATGCT+TGG | - | chr4.4:72823976-72823995 | MS.gene48746:CDS | 45.0% | |
TCAGCACAAGAAACAACTCC+AGG | + | chr4.4:72824087-72824106 | None:intergenic | 45.0% | |
TCATTGATCTCCATAGGGAG+GGG | - | chr4.4:72823735-72823754 | MS.gene48746:CDS | 45.0% | |
! | CTAAGACAAAGGGGTTAGTG+AGG | - | chr4.4:72825022-72825041 | MS.gene48746:intron | 45.0% |
! | TTCTAGAGATGCTGTAGCAC+TGG | - | chr4.4:72824122-72824141 | MS.gene48746:intron | 45.0% |
!! | AAAGACTTGGTTGGTGGAAG+AGG | - | chr4.4:72824964-72824983 | MS.gene48746:intron | 45.0% |
ATTACCAGAACCCCTCCCTA+TGG | + | chr4.4:72823748-72823767 | None:intergenic | 50.0% | |
CAATTCCTCCTAACCTCTCC+AGG | + | chr4.4:72825129-72825148 | None:intergenic | 50.0% | |
GCTGTAGAGAAAGCTTGTCC+TGG | - | chr4.4:72824066-72824085 | MS.gene48746:intron | 50.0% | |
GGAGGTGAGGTTAGGAAGAT+TGG | - | chr4.4:72824618-72824637 | MS.gene48746:CDS | 50.0% | |
!! | AGAGTGCTTGCATTGGCTCT+TGG | + | chr4.4:72824691-72824710 | None:intergenic | 50.0% |
!! | CTTGCATTGGCTCTTGGACT+TGG | + | chr4.4:72824685-72824704 | None:intergenic | 50.0% |
!! | GAGATCCTGAGAGTGCTACA+AGG | + | chr4.4:72824753-72824772 | None:intergenic | 50.0% |
AGCAGGATCAAGTGCAGGGT+CGG | + | chr4.4:72824845-72824864 | None:intergenic | 55.0% | |
ATCTCCATAGGGAGGGGTTC+TGG | - | chr4.4:72823741-72823760 | MS.gene48746:CDS | 55.0% | |
CCAGATTGGGAGGTGAGGTT+AGG | - | chr4.4:72824610-72824629 | MS.gene48746:CDS | 55.0% | |
CCTAACCTCACCTCCCAATC+TGG | + | chr4.4:72824613-72824632 | None:intergenic | 55.0% | |
GCAGACAGGAGGACCAGATT+GGG | - | chr4.4:72824597-72824616 | MS.gene48746:CDS | 55.0% | |
GGATCTCACTCTATCGGCCA+AGG | - | chr4.4:72824766-72824785 | MS.gene48746:intron | 55.0% | |
TGCAGACAGGAGGACCAGAT+TGG | - | chr4.4:72824596-72824615 | MS.gene48746:CDS | 55.0% | |
GACAGGAGGACCAGATTGGG+AGG | - | chr4.4:72824600-72824619 | MS.gene48746:CDS | 60.0% | |
GAGGACCAGATTGGGAGGTG+AGG | - | chr4.4:72824605-72824624 | MS.gene48746:CDS | 60.0% | |
GCAGGATCAAGTGCAGGGTC+GGG | + | chr4.4:72824844-72824863 | None:intergenic | 60.0% | |
TGGGTGATCTGCAGTCCGGT+CGG | - | chr4.4:72825103-72825122 | MS.gene48746:intron | 60.0% | |
! | AGGGTCGGGTTTTCCGCTAC+CGG | + | chr4.4:72824830-72824849 | None:intergenic | 60.0% |
CCTAACCTCTCCAGGCCGAC+CGG | + | chr4.4:72825121-72825140 | None:intergenic | 65.0% | |
GTCGGCCTGGAGAGGTTAGG+AGG | - | chr4.4:72825121-72825140 | MS.gene48746:intron | 65.0% | |
CCGGTCGGCCTGGAGAGGTT+AGG | - | chr4.4:72825118-72825137 | MS.gene48746:intron | 70.0% | |
GATCTGCAGTCCGGTCGGCC+TGG | - | chr4.4:72825108-72825127 | MS.gene48746:intron | 70.0% | |
GCAGTCCGGTCGGCCTGGAG+AGG | - | chr4.4:72825113-72825132 | MS.gene48746:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 72823394 | 72825221 | 72823394 | ID=MS.gene48746 |
chr4.4 | mRNA | 72823394 | 72825221 | 72823394 | ID=MS.gene48746.t1;Parent=MS.gene48746 |
chr4.4 | exon | 72825144 | 72825221 | 72825144 | ID=MS.gene48746.t1.exon1;Parent=MS.gene48746.t1 |
chr4.4 | CDS | 72825144 | 72825221 | 72825144 | ID=cds.MS.gene48746.t1;Parent=MS.gene48746.t1 |
chr4.4 | exon | 72824472 | 72824663 | 72824472 | ID=MS.gene48746.t1.exon2;Parent=MS.gene48746.t1 |
chr4.4 | CDS | 72824472 | 72824663 | 72824472 | ID=cds.MS.gene48746.t1;Parent=MS.gene48746.t1 |
chr4.4 | exon | 72823394 | 72824014 | 72823394 | ID=MS.gene48746.t1.exon3;Parent=MS.gene48746.t1 |
chr4.4 | CDS | 72823394 | 72824014 | 72823394 | ID=cds.MS.gene48746.t1;Parent=MS.gene48746.t1 |
Gene Sequence |
Protein sequence |