Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49971.t1 | XP_013469882.1 | 99.7 | 349 | 1 | 0 | 1 | 349 | 1 | 349 | 2.30E-189 | 671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49971.t1 | O23787 | 80.3 | 356 | 63 | 3 | 1 | 349 | 1 | 356 | 5.4e-155 | 548.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49971.t1 | A0A072W0W5 | 99.7 | 349 | 1 | 0 | 1 | 349 | 1 | 349 | 1.6e-189 | 671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49971 | 0.810571 | 1.08E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene49971 | 0.814126 | 1.81E-51 | -1.69E-46 |
| MS.gene050811 | MS.gene49971 | -0.811676 | 6.22E-51 | -1.69E-46 |
| MS.gene05081 | MS.gene49971 | 0.80066 | 1.30E-48 | -1.69E-46 |
| MS.gene051838 | MS.gene49971 | 0.814134 | 1.80E-51 | -1.69E-46 |
| MS.gene052015 | MS.gene49971 | -0.822307 | 2.54E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene49971 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene49971 | 0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene49971 | 0.821311 | 4.32E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene49971 | 0.817709 | 2.87E-52 | -1.69E-46 |
| MS.gene053997 | MS.gene49971 | 0.801977 | 6.98E-49 | -1.69E-46 |
| MS.gene054343 | MS.gene49971 | 0.86402 | 1.64E-64 | -1.69E-46 |
| MS.gene054344 | MS.gene49971 | 0.824702 | 7.00E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene49971 | 0.822747 | 2.01E-53 | -1.69E-46 |
| MS.gene055719 | MS.gene49971 | -0.802556 | 5.30E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene49971 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene49971 | 0.821763 | 3.40E-53 | -1.69E-46 |
| MS.gene057332 | MS.gene49971 | 0.810868 | 9.31E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene49971 | 0.803637 | 3.17E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene49971 | -0.802489 | 5.48E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene49971 | 0.823106 | 1.66E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene49971 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene059023 | MS.gene49971 | 0.83028 | 3.21E-55 | -1.69E-46 |
| MS.gene059103 | MS.gene49971 | -0.849201 | 3.76E-60 | -1.69E-46 |
| MS.gene05914 | MS.gene49971 | 0.825576 | 4.35E-54 | -1.69E-46 |
| MS.gene059303 | MS.gene49971 | 0.864125 | 1.52E-64 | -1.69E-46 |
| MS.gene059480 | MS.gene49971 | -0.856469 | 3.15E-62 | -1.69E-46 |
| MS.gene059512 | MS.gene49971 | 0.8002 | 1.61E-48 | -1.69E-46 |
| MS.gene059683 | MS.gene49971 | 0.804176 | 2.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49971.t1 | MTR_1g105480 | 99.713 | 349 | 1 | 0 | 1 | 349 | 1 | 349 | 0.0 | 717 |
| MS.gene49971.t1 | MTR_4g081130 | 77.183 | 355 | 70 | 4 | 1 | 349 | 1 | 350 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49971.t1 | AT5G54770 | 79.429 | 350 | 67 | 3 | 4 | 349 | 1 | 349 | 0.0 | 560 |
Find 93 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTGAAGAATGAGGATT+TGG | 0.249214 | 1.1:+75419477 | None:intergenic |
| AAGTGAACCAGAGCTTATTT+TGG | 0.293889 | 1.1:-75417942 | MS.gene49971:CDS |
| ATTTGTAGGGTCCAACATTT+GGG | 0.296575 | 1.1:-75418054 | MS.gene49971:intron |
| GTTCCTGGTATGATTGTTAC+TGG | 0.328065 | 1.1:-75418698 | MS.gene49971:CDS |
| TGTGGACATGATGGTCCTTT+TGG | 0.329730 | 1.1:-75418836 | MS.gene49971:CDS |
| ATATCAAGTGCTTTCATTCC+AGG | 0.329942 | 1.1:+75418764 | None:intergenic |
| TATTTGTAGGGTCCAACATT+TGG | 0.333389 | 1.1:-75418055 | MS.gene49971:intron |
| CGTCATCGTCGGTGCGGGTT+CGG | 0.365933 | 1.1:-75419269 | MS.gene49971:CDS |
| ACCGAGCCATGCACCGCCAC+CGG | 0.369028 | 1.1:+75419171 | None:intergenic |
| ATGATGGCGATACTGATGTT+TGG | 0.371853 | 1.1:+75419211 | None:intergenic |
| AGCTGCACATTTGGCATTGA+AGG | 0.371858 | 1.1:-75418008 | MS.gene49971:CDS |
| TTGCTGGTGTTGTTACAAAC+TGG | 0.379842 | 1.1:-75418937 | MS.gene49971:CDS |
| CCGAGCCATGCACCGCCACC+GGG | 0.388024 | 1.1:+75419172 | None:intergenic |
| AGGACAGAAAGCTGCACATT+TGG | 0.390045 | 1.1:-75418017 | MS.gene49971:CDS |
| GGTATGATTGATCATGTTCC+TGG | 0.390693 | 1.1:-75418782 | MS.gene49971:CDS |
| TGTTGTTACAAACTGGGCTT+TGG | 0.398106 | 1.1:-75418930 | MS.gene49971:CDS |
| TTGCATGGATCCTAATGTTA+TGG | 0.401616 | 1.1:-75418882 | MS.gene49971:CDS |
| ACCTTAGCTTCCATAACATT+AGG | 0.407939 | 1.1:+75418872 | None:intergenic |
| CCATTGAAGAATGAGGATTT+GGG | 0.411622 | 1.1:+75419478 | None:intergenic |
| GGCAGGAACAATGCAATTGA+TGG | 0.414535 | 1.1:-75417980 | MS.gene49971:CDS |
| CATTTGGCATTGAAGGCATT+GGG | 0.419034 | 1.1:-75418001 | MS.gene49971:CDS |
| AGAGACGATGGATTCTTTGA+TGG | 0.420701 | 1.1:+75419348 | None:intergenic |
| TTTGGGGCAATGATGATATC+AGG | 0.421526 | 1.1:-75418037 | MS.gene49971:CDS |
| TGATGGCGATACTGATGTTT+GGG | 0.421589 | 1.1:+75419212 | None:intergenic |
| TTGAAGGTGTTTATATCGTA+GGG | 0.424530 | 1.1:+75419379 | None:intergenic |
| CTTACAAGGGAAGTTGTTCC+TGG | 0.428163 | 1.1:-75418713 | MS.gene49971:CDS |
| ACATTTGGCATTGAAGGCAT+TGG | 0.432123 | 1.1:-75418002 | MS.gene49971:CDS |
| CATCTCTTCCTCGATGAAAT+CGG | 0.434159 | 1.1:-75419109 | MS.gene49971:CDS |
| CAACCATGGCGGAGAAGAGC+TGG | 0.441613 | 1.1:+75419146 | None:intergenic |
| CCCGGTGGCGGTGCATGGCT+CGG | 0.443680 | 1.1:-75419172 | MS.gene49971:CDS |
| GTTAAGAGGTTGAAGAGTAT+TGG | 0.445858 | 1.1:-75418803 | MS.gene49971:CDS |
| ATGCTATTGTTCGTCTTACA+AGG | 0.448172 | 1.1:-75418727 | MS.gene49971:CDS |
| CCCAAATCCTCATTCTTCAA+TGG | 0.449478 | 1.1:-75419478 | MS.gene49971:CDS |
| GTGAAGGAAAACAGAGTTGC+TGG | 0.450665 | 1.1:-75418953 | MS.gene49971:CDS |
| TCAGCCCCGGTGGCGGTGCA+TGG | 0.454457 | 1.1:-75419177 | MS.gene49971:CDS |
| ATCGTCGGTGCGGGTTCGGC+CGG | 0.455969 | 1.1:-75419265 | MS.gene49971:CDS |
| TTCGTAAGCGCATGAAAGAC+CGG | 0.467780 | 1.1:+75419246 | None:intergenic |
| ATCATCATTGCCCCAAATGT+TGG | 0.477979 | 1.1:+75418043 | None:intergenic |
| TTTGAAGGTGTTTATATCGT+AGG | 0.479263 | 1.1:+75419378 | None:intergenic |
| TTTGGCTTCTGCTGAATCAC+AGG | 0.481383 | 1.1:-75417924 | MS.gene49971:CDS |
| GGATTTGGGAGTTGAAGAGA+GGG | 0.481980 | 1.1:+75419492 | None:intergenic |
| TGGTCTTCCATTGAAGAATG+AGG | 0.487141 | 1.1:+75419471 | None:intergenic |
| TTTCAATGCTGTTGCTGCTG+AGG | 0.487900 | 1.1:-75418984 | MS.gene49971:CDS |
| GTGAGTTCTTGTGGACATGA+TGG | 0.494717 | 1.1:-75418845 | MS.gene49971:CDS |
| TGGTATGATTGTTACTGGTA+TGG | 0.499259 | 1.1:-75418693 | MS.gene49971:CDS |
| TCCTAATGTTATGGAAGCTA+AGG | 0.499413 | 1.1:-75418873 | MS.gene49971:CDS |
| GACGTCGTCATCGTCGGTGC+GGG | 0.500597 | 1.1:-75419274 | MS.gene49971:CDS |
| AGGATTTGGGAGTTGAAGAG+AGG | 0.501201 | 1.1:+75419491 | None:intergenic |
| TGCTGGTGTTGTTACAAACT+GGG | 0.501512 | 1.1:-75418936 | MS.gene49971:CDS |
| TTGGTGCTACTGGTGTTAAG+AGG | 0.502640 | 1.1:-75418817 | MS.gene49971:CDS |
| TGCAAGAAGCTTGCTCATGA+TGG | 0.508423 | 1.1:+75419024 | None:intergenic |
| GTGGAGGTGCGAGTAGCAAT+TGG | 0.509453 | 1.1:+75419451 | None:intergenic |
| TTTGATGGGTGCGAATTTGA+AGG | 0.512764 | 1.1:+75419363 | None:intergenic |
| TGGCATTGAAGGCATTGGGC+AGG | 0.520579 | 1.1:-75417997 | MS.gene49971:CDS |
| TCATCGAGGAAGAGATGAGC+TGG | 0.521532 | 1.1:+75419115 | None:intergenic |
| TGGCCAGCTCTTCTCCGCCA+TGG | 0.524431 | 1.1:-75419149 | MS.gene49971:CDS |
| GAAGGTGTTTATATCGTAGG+GGG | 0.526933 | 1.1:+75419381 | None:intergenic |
| GAGACGATGGATTCTTTGAT+GGG | 0.528361 | 1.1:+75419349 | None:intergenic |
| CAATCCGTCAGCCCCGGTGG+CGG | 0.528507 | 1.1:-75419184 | MS.gene49971:CDS |
| TGCACCGCCACCGGGGCTGA+CGG | 0.530127 | 1.1:+75419180 | None:intergenic |
| CCATGCAAGATTGTGTATCA+TGG | 0.534946 | 1.1:+75418897 | None:intergenic |
| ATGGAAGTTGCTGAAATTGA+TGG | 0.535463 | 1.1:-75418674 | MS.gene49971:CDS |
| AATACCCCTAATGGCATCCA+TGG | 0.539198 | 1.1:-75419536 | None:intergenic |
| CCATGATACACAATCTTGCA+TGG | 0.547093 | 1.1:-75418897 | MS.gene49971:CDS |
| ATCGAACAATCCGTCAGCCC+CGG | 0.549798 | 1.1:-75419190 | MS.gene49971:CDS |
| GCAGAAGCCAAAATAAGCTC+TGG | 0.553231 | 1.1:+75417935 | None:intergenic |
| TTAACACCAGTAGCACCAAA+AGG | 0.554005 | 1.1:+75418821 | None:intergenic |
| AGTGAGAGATGCAGTGGCCA+TGG | 0.554618 | 1.1:+75419519 | None:intergenic |
| AAGGTTGTTGTGAGTTCTTG+TGG | 0.556055 | 1.1:-75418854 | MS.gene49971:CDS |
| CATATCTGTCATGTAACGAC+GGG | 0.569723 | 1.1:+75419315 | None:intergenic |
| GGTCATTTCACGAGAGACGA+TGG | 0.571046 | 1.1:+75419336 | None:intergenic |
| GACGATGACGACGTCGGTGT+CGG | 0.577296 | 1.1:+75419282 | None:intergenic |
| TGCTGAGGATTTGATTGTGA+AGG | 0.582701 | 1.1:-75418969 | MS.gene49971:CDS |
| GGAAGTAGTGAGAGATGCAG+TGG | 0.583000 | 1.1:+75419513 | None:intergenic |
| AATTGATGGTGCCCCAAGAA+TGG | 0.586166 | 1.1:-75418660 | MS.gene49971:intron |
| GACGACGTCGGTGTCGGCGT+AGG | 0.595030 | 1.1:+75419288 | None:intergenic |
| CGACGTCGTCATCGTCGGTG+CGG | 0.596105 | 1.1:-75419275 | MS.gene49971:CDS |
| CGAGCCATGCACCGCCACCG+GGG | 0.601463 | 1.1:+75419173 | None:intergenic |
| AGCTGGTTTGCGAACAACCA+TGG | 0.605597 | 1.1:+75419132 | None:intergenic |
| GCTGACGGATTGTTCGATGA+TGG | 0.605605 | 1.1:+75419195 | None:intergenic |
| GACACCGACGTCGTCATCGT+CGG | 0.606029 | 1.1:-75419280 | MS.gene49971:CDS |
| TGCTATTGTTCGTCTTACAA+GGG | 0.611924 | 1.1:-75418726 | MS.gene49971:CDS |
| AAGGTGTTTATATCGTAGGG+GGG | 0.613541 | 1.1:+75419382 | None:intergenic |
| GGTGGATTTGATGATAGTGG+AGG | 0.638284 | 1.1:+75419435 | None:intergenic |
| GAACAATCCGTCAGCCCCGG+TGG | 0.648251 | 1.1:-75419187 | MS.gene49971:CDS |
| TGAAGGTGTTTATATCGTAG+GGG | 0.653158 | 1.1:+75419380 | None:intergenic |
| TCATATCTGTCATGTAACGA+CGG | 0.659308 | 1.1:+75419314 | None:intergenic |
| GGTGGCGGTGCATGGCTCGG+TGG | 0.665089 | 1.1:-75419169 | MS.gene49971:CDS |
| ATACCAGTAACAATCATACC+AGG | 0.680671 | 1.1:+75418695 | None:intergenic |
| TTTGTAGGGTCCAACATTTG+GGG | 0.712376 | 1.1:-75418053 | MS.gene49971:intron |
| ATTCGACACCGATTTCATCG+AGG | 0.721644 | 1.1:+75419101 | None:intergenic |
| CGCACCGACGATGACGACGT+CGG | 0.729324 | 1.1:+75419276 | None:intergenic |
| TGGTTTGCGAACAACCATGG+CGG | 0.745776 | 1.1:+75419135 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATTTCAATTATTT+TGG | - | chr1.1:75418800-75418819 | MS.gene49971:CDS | 10.0% |
| !! | AGCTAATAAAAACAATTTAT+AGG | - | chr1.1:75419078-75419097 | MS.gene49971:CDS | 15.0% |
| !!! | ATCTACAATTTTTTGTTTAT+AGG | - | chr1.1:75419244-75419263 | MS.gene49971:CDS | 15.0% |
| !!! | ATTAAACTTTTTATCTAAAG+AGG | - | chr1.1:75419214-75419233 | MS.gene49971:CDS | 15.0% |
| !! | ACAAAAAATTGTAGATCATA+AGG | + | chr1.1:75419240-75419259 | None:intergenic | 20.0% |
| !! | TTATTATATATGCAAGTGTT+TGG | + | chr1.1:75419172-75419191 | None:intergenic | 20.0% |
| !!! | ATGTATCAACTATTTCTATA+AGG | + | chr1.1:75418975-75418994 | None:intergenic | 20.0% |
| !!! | TTATAGAAATAGTTGATACA+TGG | - | chr1.1:75418974-75418993 | MS.gene49971:CDS | 20.0% |
| ! | ATAAAAAAGCTTACCATTCT+TGG | + | chr1.1:75418789-75418808 | None:intergenic | 25.0% |
| ! | TAAAAAAGCTTACCATTCTT+GGG | + | chr1.1:75418788-75418807 | None:intergenic | 25.0% |
| !!! | TATTTTTTTCAACTCCATGT+TGG | - | chr1.1:75419286-75419305 | MS.gene49971:CDS | 25.0% |
| !!! | TTTTGTTGGTGATATTTGTA+GGG | - | chr1.1:75419366-75419385 | MS.gene49971:CDS | 25.0% |
| !!! | TTTTGTTTATAGGCTTGTTT+GGG | - | chr1.1:75419254-75419273 | MS.gene49971:CDS | 25.0% |
| !!! | TTTTTGTTTATAGGCTTGTT+TGG | - | chr1.1:75419253-75419272 | MS.gene49971:CDS | 25.0% |
| AAAAAAGCTTACCATTCTTG+GGG | + | chr1.1:75418787-75418806 | None:intergenic | 30.0% | |
| GTTTGATTAAGATGTGCTAA+CGG | - | chr1.1:75419343-75419362 | MS.gene49971:CDS | 30.0% | |
| TGTGTTTGTGATATTGAGTT+AGG | - | chr1.1:75418844-75418863 | MS.gene49971:CDS | 30.0% | |
| ! | GCATTGAAAAGTTTTACGTT+AGG | + | chr1.1:75418438-75418457 | None:intergenic | 30.0% |
| ! | TTTGTTTATAGGCTTGTTTG+GGG | - | chr1.1:75419255-75419274 | MS.gene49971:CDS | 30.0% |
| !! | TTGAAGGTGTTTATATCGTA+GGG | + | chr1.1:75418057-75418076 | None:intergenic | 30.0% |
| !! | TTTGAAGGTGTTTATATCGT+AGG | + | chr1.1:75418058-75418077 | None:intergenic | 30.0% |
| !!! | GTTTTGTTGGTGATATTTGT+AGG | - | chr1.1:75419365-75419384 | MS.gene49971:CDS | 30.0% |
| !!! | TAGTGACATGGTGATTTTTT+GGG | + | chr1.1:75418025-75418044 | None:intergenic | 30.0% |
| !!! | TTAGTGACATGGTGATTTTT+TGG | + | chr1.1:75418026-75418045 | None:intergenic | 30.0% |
| ACCTTAGCTTCCATAACATT+AGG | + | chr1.1:75418564-75418583 | None:intergenic | 35.0% | |
| ATACCAGTAACAATCATACC+AGG | + | chr1.1:75418741-75418760 | None:intergenic | 35.0% | |
| ATATCAAGTGCTTTCATTCC+AGG | + | chr1.1:75418672-75418691 | None:intergenic | 35.0% | |
| ATGCTATTGTTCGTCTTACA+AGG | - | chr1.1:75418706-75418725 | MS.gene49971:CDS | 35.0% | |
| ATGGAAGTTGCTGAAATTGA+TGG | - | chr1.1:75418759-75418778 | MS.gene49971:CDS | 35.0% | |
| ATTTGTAGGGTCCAACATTT+GGG | - | chr1.1:75419379-75419398 | MS.gene49971:CDS | 35.0% | |
| CCATTGAAGAATGAGGATTT+GGG | + | chr1.1:75417958-75417977 | None:intergenic | 35.0% | |
| TATTTGTAGGGTCCAACATT+TGG | - | chr1.1:75419378-75419397 | MS.gene49971:CDS | 35.0% | |
| TCATATCTGTCATGTAACGA+CGG | + | chr1.1:75418122-75418141 | None:intergenic | 35.0% | |
| TCCATTGAAGAATGAGGATT+TGG | + | chr1.1:75417959-75417978 | None:intergenic | 35.0% | |
| TCCTAATGTTATGGAAGCTA+AGG | - | chr1.1:75418560-75418579 | MS.gene49971:intron | 35.0% | |
| TGCTATTGTTCGTCTTACAA+GGG | - | chr1.1:75418707-75418726 | MS.gene49971:CDS | 35.0% | |
| TGGTATGATTGTTACTGGTA+TGG | - | chr1.1:75418740-75418759 | MS.gene49971:CDS | 35.0% | |
| TTGCATGGATCCTAATGTTA+TGG | - | chr1.1:75418551-75418570 | MS.gene49971:intron | 35.0% | |
| ! | AAGTGAACCAGAGCTTATTT+TGG | - | chr1.1:75419491-75419510 | MS.gene49971:CDS | 35.0% |
| ! | GTTAAGAGGTTGAAGAGTAT+TGG | - | chr1.1:75418630-75418649 | MS.gene49971:intron | 35.0% |
| ! | TTGTTTATAGGCTTGTTTGG+GGG | - | chr1.1:75419256-75419275 | MS.gene49971:CDS | 35.0% |
| !! | GATACTGATGTTTGGGTTTT+TGG | + | chr1.1:75418217-75418236 | None:intergenic | 35.0% |
| !! | GATGCAATTTGGTGATGATA+AGG | - | chr1.1:75419317-75419336 | MS.gene49971:CDS | 35.0% |
| !! | TGAAGGTGTTTATATCGTAG+GGG | + | chr1.1:75418056-75418075 | None:intergenic | 35.0% |
| !! | TTTTTCAACTCCATGTTGGT+TGG | - | chr1.1:75419290-75419309 | MS.gene49971:CDS | 35.0% |
| !!! | AGTGACATGGTGATTTTTTG+GGG | + | chr1.1:75418024-75418043 | None:intergenic | 35.0% |
| !!! | TGGTTGGTTTTGATGCAATT+TGG | - | chr1.1:75419306-75419325 | MS.gene49971:CDS | 35.0% |
| AAGGTTGTTGTGAGTTCTTG+TGG | - | chr1.1:75418579-75418598 | MS.gene49971:intron | 40.0% | |
| ATACATGGACCTGTTTGGAT+TGG | - | chr1.1:75418989-75419008 | MS.gene49971:CDS | 40.0% | |
| ATCATCATTGCCCCAAATGT+TGG | + | chr1.1:75419393-75419412 | None:intergenic | 40.0% | |
| CATATCTGTCATGTAACGAC+GGG | + | chr1.1:75418121-75418140 | None:intergenic | 40.0% | |
| CATCTCTTCCTCGATGAAAT+CGG | - | chr1.1:75418324-75418343 | MS.gene49971:intron | 40.0% | |
| CCATGATACACAATCTTGCA+TGG | - | chr1.1:75418536-75418555 | MS.gene49971:intron | 40.0% | |
| CCATGCAAGATTGTGTATCA+TGG | + | chr1.1:75418539-75418558 | None:intergenic | 40.0% | |
| CCCAAATCCTCATTCTTCAA+TGG | - | chr1.1:75417955-75417974 | MS.gene49971:CDS | 40.0% | |
| GGTATGATTGATCATGTTCC+TGG | - | chr1.1:75418651-75418670 | MS.gene49971:intron | 40.0% | |
| GTTCCTGGTATGATTGTTAC+TGG | - | chr1.1:75418735-75418754 | MS.gene49971:CDS | 40.0% | |
| TGCATCAAAACCAACCAACA+TGG | + | chr1.1:75419303-75419322 | None:intergenic | 40.0% | |
| TGCTGAGGATTTGATTGTGA+AGG | - | chr1.1:75418464-75418483 | MS.gene49971:intron | 40.0% | |
| TGGTCTTCCATTGAAGAATG+AGG | + | chr1.1:75417965-75417984 | None:intergenic | 40.0% | |
| TGTTGTTACAAACTGGGCTT+TGG | - | chr1.1:75418503-75418522 | MS.gene49971:intron | 40.0% | |
| TTAACACCAGTAGCACCAAA+AGG | + | chr1.1:75418615-75418634 | None:intergenic | 40.0% | |
| TTTGTAGGGTCCAACATTTG+GGG | - | chr1.1:75419380-75419399 | MS.gene49971:CDS | 40.0% | |
| ! | AAGGTGTTTATATCGTAGGG+GGG | + | chr1.1:75418054-75418073 | None:intergenic | 40.0% |
| ! | ACATTTGGCATTGAAGGCAT+TGG | - | chr1.1:75419431-75419450 | MS.gene49971:CDS | 40.0% |
| ! | AGAGACGATGGATTCTTTGA+TGG | + | chr1.1:75418088-75418107 | None:intergenic | 40.0% |
| ! | AGTTGATACATGGACCTGTT+TGG | - | chr1.1:75418984-75419003 | MS.gene49971:CDS | 40.0% |
| ! | ATGATGGCGATACTGATGTT+TGG | + | chr1.1:75418225-75418244 | None:intergenic | 40.0% |
| ! | GAGACGATGGATTCTTTGAT+GGG | + | chr1.1:75418087-75418106 | None:intergenic | 40.0% |
| ! | TGATGGCGATACTGATGTTT+GGG | + | chr1.1:75418224-75418243 | None:intergenic | 40.0% |
| ! | TGTTTATAGGCTTGTTTGGG+GGG | - | chr1.1:75419257-75419276 | MS.gene49971:CDS | 40.0% |
| ! | TTTGATGGGTGCGAATTTGA+AGG | + | chr1.1:75418073-75418092 | None:intergenic | 40.0% |
| ! | TTTGGGGCAATGATGATATC+AGG | - | chr1.1:75419396-75419415 | MS.gene49971:CDS | 40.0% |
| !! | ACCTGTTTGGATTGGCTATT+TGG | - | chr1.1:75418997-75419016 | MS.gene49971:CDS | 40.0% |
| !! | AGATGTGCTAACGGTTTTGT+TGG | - | chr1.1:75419352-75419371 | MS.gene49971:CDS | 40.0% |
| !! | CATTTGGCATTGAAGGCATT+GGG | - | chr1.1:75419432-75419451 | MS.gene49971:CDS | 40.0% |
| !! | CCTGTTTGGATTGGCTATTT+GGG | - | chr1.1:75418998-75419017 | MS.gene49971:CDS | 40.0% |
| !! | GAAGGTGTTTATATCGTAGG+GGG | + | chr1.1:75418055-75418074 | None:intergenic | 40.0% |
| !! | TGCTGGTGTTGTTACAAACT+GGG | - | chr1.1:75418497-75418516 | MS.gene49971:intron | 40.0% |
| !! | TTGCTGGTGTTGTTACAAAC+TGG | - | chr1.1:75418496-75418515 | MS.gene49971:intron | 40.0% |
| !!! | GTGACATGGTGATTTTTTGG+GGG | + | chr1.1:75418023-75418042 | None:intergenic | 40.0% |
| !!! | TGACATGGTGATTTTTTGGG+GGG | + | chr1.1:75418022-75418041 | None:intergenic | 40.0% |
| AGGACAGAAAGCTGCACATT+TGG | - | chr1.1:75419416-75419435 | MS.gene49971:CDS | 45.0% | |
| AGGATTTGGGAGTTGAAGAG+AGG | + | chr1.1:75417945-75417964 | None:intergenic | 45.0% | |
| CCCAAATAGCCAATCCAAAC+AGG | + | chr1.1:75419001-75419020 | None:intergenic | 45.0% | |
| CTTACAAGGGAAGTTGTTCC+TGG | - | chr1.1:75418720-75418739 | MS.gene49971:CDS | 45.0% | |
| GCAGAAGCCAAAATAAGCTC+TGG | + | chr1.1:75419501-75419520 | None:intergenic | 45.0% | |
| GGATTTGGGAGTTGAAGAGA+GGG | + | chr1.1:75417944-75417963 | None:intergenic | 45.0% | |
| GGCAGGAACAATGCAATTGA+TGG | - | chr1.1:75419453-75419472 | MS.gene49971:CDS | 45.0% | |
| GTGAAGGAAAACAGAGTTGC+TGG | - | chr1.1:75418480-75418499 | MS.gene49971:intron | 45.0% | |
| GTGAGTTCTTGTGGACATGA+TGG | - | chr1.1:75418588-75418607 | MS.gene49971:intron | 45.0% | |
| TTCGTAAGCGCATGAAAGAC+CGG | + | chr1.1:75418190-75418209 | None:intergenic | 45.0% | |
| TTTCAATGCTGTTGCTGCTG+AGG | - | chr1.1:75418449-75418468 | MS.gene49971:intron | 45.0% | |
| ! | AGCTGCACATTTGGCATTGA+AGG | - | chr1.1:75419425-75419444 | MS.gene49971:CDS | 45.0% |
| ! | TGCAAGAAGCTTGCTCATGA+TGG | + | chr1.1:75418412-75418431 | None:intergenic | 45.0% |
| ! | TGTGGACATGATGGTCCTTT+TGG | - | chr1.1:75418597-75418616 | MS.gene49971:intron | 45.0% |
| ! | TTTGGCTTCTGCTGAATCAC+AGG | - | chr1.1:75419509-75419528 | MS.gene49971:CDS | 45.0% |
| !! | AATTGATGGTGCCCCAAGAA+TGG | - | chr1.1:75418773-75418792 | MS.gene49971:CDS | 45.0% |
| !! | ATTCGACACCGATTTCATCG+AGG | + | chr1.1:75418335-75418354 | None:intergenic | 45.0% |
| !! | GGTGGATTTGATGATAGTGG+AGG | + | chr1.1:75418001-75418020 | None:intergenic | 45.0% |
| !! | TTGGTGCTACTGGTGTTAAG+AGG | - | chr1.1:75418616-75418635 | MS.gene49971:intron | 45.0% |
| GGAAGTAGTGAGAGATGCAG+TGG | + | chr1.1:75417923-75417942 | None:intergenic | 50.0% | |
| GGTCATTTCACGAGAGACGA+TGG | + | chr1.1:75418100-75418119 | None:intergenic | 50.0% | |
| GTTTATATCGTAGGGGGGTG+TGG | + | chr1.1:75418049-75418068 | None:intergenic | 50.0% | |
| TCATCGAGGAAGAGATGAGC+TGG | + | chr1.1:75418321-75418340 | None:intergenic | 50.0% | |
| ! | GGGGGTGGATTTGATGATAG+TGG | + | chr1.1:75418004-75418023 | None:intergenic | 50.0% |
| ! | TGGTTTGCGAACAACCATGG+CGG | + | chr1.1:75418301-75418320 | None:intergenic | 50.0% |
| !! | AGCTGGTTTGCGAACAACCA+TGG | + | chr1.1:75418304-75418323 | None:intergenic | 50.0% |
| !! | GCTGACGGATTGTTCGATGA+TGG | + | chr1.1:75418241-75418260 | None:intergenic | 50.0% |
| !!! | CATGGTGATTTTTTGGGGGG+TGG | + | chr1.1:75418019-75418038 | None:intergenic | 50.0% |
| !!! | GATGGTCCTTTTGGTGCTAC+TGG | - | chr1.1:75418606-75418625 | MS.gene49971:intron | 50.0% |
| AGTGAGAGATGCAGTGGCCA+TGG | + | chr1.1:75417917-75417936 | None:intergenic | 55.0% | |
| ATCGAACAATCCGTCAGCCC+CGG | - | chr1.1:75418243-75418262 | MS.gene49971:intron | 55.0% | |
| ! | GTGGAGGTGCGAGTAGCAAT+TGG | + | chr1.1:75417985-75418004 | None:intergenic | 55.0% |
| !! | TGGCATTGAAGGCATTGGGC+AGG | - | chr1.1:75419436-75419455 | MS.gene49971:CDS | 55.0% |
| GACACCGACGTCGTCATCGT+CGG | - | chr1.1:75418153-75418172 | MS.gene49971:intron | 60.0% | |
| GACGATGACGACGTCGGTGT+CGG | + | chr1.1:75418154-75418173 | None:intergenic | 60.0% | |
| ! | CAACCATGGCGGAGAAGAGC+TGG | + | chr1.1:75418290-75418309 | None:intergenic | 60.0% |
| ! | GGGGGGTGTGGTTAGTGACA+TGG | + | chr1.1:75418037-75418056 | None:intergenic | 60.0% |
| CGACGTCGTCATCGTCGGTG+CGG | - | chr1.1:75418158-75418177 | MS.gene49971:intron | 65.0% | |
| CGTCATCGTCGGTGCGGGTT+CGG | - | chr1.1:75418164-75418183 | MS.gene49971:intron | 65.0% | |
| GAACAATCCGTCAGCCCCGG+TGG | - | chr1.1:75418246-75418265 | MS.gene49971:intron | 65.0% | |
| GACGTCGTCATCGTCGGTGC+GGG | - | chr1.1:75418159-75418178 | MS.gene49971:intron | 65.0% | |
| TGGCCAGCTCTTCTCCGCCA+TGG | - | chr1.1:75418284-75418303 | MS.gene49971:intron | 65.0% | |
| ! | CGCACCGACGATGACGACGT+CGG | + | chr1.1:75418160-75418179 | None:intergenic | 65.0% |
| ACCGAGCCATGCACCGCCAC+CGG | + | chr1.1:75418265-75418284 | None:intergenic | 70.0% | |
| ATCGTCGGTGCGGGTTCGGC+CGG | - | chr1.1:75418168-75418187 | MS.gene49971:intron | 70.0% | |
| CAATCCGTCAGCCCCGGTGG+CGG | - | chr1.1:75418249-75418268 | MS.gene49971:intron | 70.0% | |
| !! | GACGACGTCGGTGTCGGCGT+AGG | + | chr1.1:75418148-75418167 | None:intergenic | 70.0% |
| CCGAGCCATGCACCGCCACC+GGG | + | chr1.1:75418264-75418283 | None:intergenic | 75.0% | |
| CGAGCCATGCACCGCCACCG+GGG | + | chr1.1:75418263-75418282 | None:intergenic | 75.0% | |
| TGCACCGCCACCGGGGCTGA+CGG | + | chr1.1:75418256-75418275 | None:intergenic | 75.0% | |
| ! | CCCGGTGGCGGTGCATGGCT+CGG | - | chr1.1:75418261-75418280 | MS.gene49971:intron | 75.0% |
| ! | GGTGGCGGTGCATGGCTCGG+TGG | - | chr1.1:75418264-75418283 | MS.gene49971:intron | 75.0% |
| ! | TCAGCCCCGGTGGCGGTGCA+TGG | - | chr1.1:75418256-75418275 | MS.gene49971:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 75417907 | 75419548 | 75417907 | ID=MS.gene49971 |
| chr1.1 | mRNA | 75417907 | 75419548 | 75417907 | ID=MS.gene49971.t1;Parent=MS.gene49971 |
| chr1.1 | exon | 75418661 | 75419548 | 75418661 | ID=MS.gene49971.t1.exon1;Parent=MS.gene49971.t1 |
| chr1.1 | CDS | 75418661 | 75419548 | 75418661 | ID=cds.MS.gene49971.t1;Parent=MS.gene49971.t1 |
| chr1.1 | exon | 75417907 | 75418068 | 75417907 | ID=MS.gene49971.t1.exon2;Parent=MS.gene49971.t1 |
| chr1.1 | CDS | 75417907 | 75418068 | 75417907 | ID=cds.MS.gene49971.t1;Parent=MS.gene49971.t1 |
| Gene Sequence |
| Protein sequence |
