AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049783

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049783.t1 MTR_4g057450 98.684 304 4 0 1 304 1 304 0.0 624
MS.gene049783.t1 MTR_2g095800 76.451 293 67 2 13 304 18 309 3.13e-168 469
MS.gene049783.t1 MTR_7g102260 70.790 291 85 0 14 304 1 291 3.47e-158 443
MS.gene049783.t1 MTR_1g063020 69.204 289 89 0 16 304 6 294 2.11e-153 431
MS.gene049783.t1 MTR_1g033420 42.754 276 143 5 41 304 19 291 3.84e-72 226
MS.gene049783.t1 MTR_8g064180 41.639 305 157 8 17 304 10 310 5.22e-67 212
MS.gene049783.t1 MTR_5g029100 38.971 272 151 4 45 304 37 305 2.24e-65 209
MS.gene049783.t1 MTR_8g090100 39.350 277 150 8 40 304 11 281 3.14e-63 202
MS.gene049783.t1 MTR_4g128410 41.509 265 138 7 49 304 24 280 3.49e-62 199
MS.gene049783.t1 MTR_5g091730 44.118 238 119 6 71 304 51 278 1.39e-61 197
MS.gene049783.t1 MTR_5g029100 41.277 235 125 3 80 304 43 274 1.68e-61 198
MS.gene049783.t1 MTR_4g126920 41.729 266 137 6 49 304 24 281 1.32e-60 194
MS.gene049783.t1 MTR_3g089540 41.603 262 139 5 49 304 29 282 3.72e-60 194
MS.gene049783.t1 MTR_6g033085 36.789 299 156 8 19 304 9 287 3.77e-60 194
MS.gene049783.t1 MTR_6g088320 37.828 267 147 6 49 304 25 283 5.25e-60 193
MS.gene049783.t1 MTR_1g105495 36.066 305 168 9 11 304 6 294 1.56e-59 192
MS.gene049783.t1 MTR_1g105900 37.226 274 153 8 42 304 26 291 3.29e-59 191
MS.gene049783.t1 MTR_7g084770 37.906 277 147 7 41 304 23 287 3.29e-59 191
MS.gene049783.t1 MTR_7g084760 40.323 248 125 6 68 304 52 287 8.86e-59 190
MS.gene049783.t1 MTR_6g033055 35.786 299 159 8 19 304 9 287 2.31e-58 189
MS.gene049783.t1 MTR_7g093530 41.132 265 139 6 49 304 23 279 9.87e-58 187
MS.gene049783.t1 MTR_7g084750 36.242 298 164 9 16 304 7 287 1.41e-57 187
MS.gene049783.t1 MTR_3g084630 39.695 262 141 6 49 304 27 277 3.23e-57 186
MS.gene049783.t1 MTR_8g102910 39.700 267 142 7 49 304 21 279 3.89e-57 186
MS.gene049783.t1 MTR_3g084620 39.695 262 141 6 49 304 27 277 4.70e-57 185
MS.gene049783.t1 MTR_8g081040 40.840 262 139 6 49 304 30 281 7.53e-57 185
MS.gene049783.t1 MTR_4g128570 39.519 291 140 9 20 304 12 272 2.40e-56 183
MS.gene049783.t1 MTR_4g128580 39.405 269 142 6 49 304 25 285 2.52e-56 184
MS.gene049783.t1 MTR_4g128400 39.844 256 137 6 58 304 36 283 5.16e-56 183
MS.gene049783.t1 MTR_8g013055 38.931 262 138 7 46 296 27 277 1.09e-55 182
MS.gene049783.t1 MTR_4g097700 37.643 263 143 7 45 296 64 316 1.52e-55 183
MS.gene049783.t1 MTR_4g097640 37.594 266 151 7 47 304 29 287 1.80e-55 182
MS.gene049783.t1 MTR_4g097670 37.594 266 151 7 47 304 29 287 1.80e-55 182
MS.gene049783.t1 MTR_2g038860 39.464 261 137 5 49 296 25 277 2.51e-55 181
MS.gene049783.t1 MTR_2g038705 39.464 261 137 5 49 296 25 277 2.51e-55 181
MS.gene049783.t1 MTR_2g089140 34.182 275 158 5 45 304 20 286 9.90e-54 177
MS.gene049783.t1 MTR_4g045853 35.878 262 145 5 50 296 27 280 3.66e-53 176
MS.gene049783.t1 MTR_7g056090 38.889 270 144 10 43 304 25 281 9.89e-52 172
MS.gene049783.t1 MTR_8g102220 38.550 262 132 7 49 304 28 266 1.71e-51 171
MS.gene049783.t1 MTR_4g128590 35.127 316 149 10 3 304 2 275 6.57e-51 169
MS.gene049783.t1 MTR_2g049130 38.868 265 140 11 48 304 27 277 1.86e-50 168
MS.gene049783.t1 MTR_2g049030 34.505 313 159 13 1 304 1 276 8.92e-50 167
MS.gene049783.t1 MTR_2g089140 35.371 229 125 5 91 304 3 223 3.50e-47 158
MS.gene049783.t1 MTR_8g032640 32.967 182 107 6 68 246 31 200 2.76e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049783.t1 AT2G36870 70.408 294 81 2 13 304 8 297 7.98e-155 435
MS.gene049783.t1 AT3G44990 64.261 291 101 1 17 304 3 293 1.26e-138 394
MS.gene049783.t1 AT2G36870 71.429 175 44 2 13 185 8 178 2.49e-87 259
MS.gene049783.t1 AT1G32170 41.912 272 145 5 43 304 25 293 6.57e-71 223
MS.gene049783.t1 AT1G10550 36.755 302 172 4 19 304 11 309 3.27e-70 220
MS.gene049783.t1 AT4G18990 40.925 281 142 4 45 304 35 312 6.69e-70 221
MS.gene049783.t1 AT1G14720 39.731 297 161 7 16 304 4 290 1.33e-69 219
MS.gene049783.t1 AT2G01850 40.977 266 142 5 49 304 30 290 6.57e-67 213
MS.gene049783.t1 AT1G11545 40.000 270 141 7 49 304 37 299 3.59e-62 199
MS.gene049783.t1 AT3G25050 35.452 299 172 6 14 304 4 289 6.49e-62 198
MS.gene049783.t1 AT5G57530 41.852 270 138 8 45 304 22 282 2.46e-61 196
MS.gene049783.t1 AT5G57540 42.481 266 134 8 49 304 25 281 5.84e-61 196
MS.gene049783.t1 AT5G57550 40.659 273 143 9 42 304 19 282 1.59e-60 194
MS.gene049783.t1 AT4G14130 39.394 297 143 9 20 304 13 284 1.02e-59 192
MS.gene049783.t1 AT5G57560 40.520 269 138 9 49 304 22 281 1.38e-59 192
MS.gene049783.t1 AT4G13090 38.276 290 152 8 17 296 8 280 2.56e-59 191
MS.gene049783.t1 AT3G23730 39.777 269 141 7 49 304 26 286 3.33e-59 191
MS.gene049783.t1 AT4G37800 37.171 304 163 7 13 304 2 289 1.15e-58 190
MS.gene049783.t1 AT5G65730 39.098 266 147 7 47 304 32 290 1.29e-58 190
MS.gene049783.t1 AT4G25820 41.353 266 137 8 49 304 29 285 1.40e-58 189
MS.gene049783.t1 AT4G25810 42.222 270 131 11 49 304 25 283 1.67e-58 189
MS.gene049783.t1 AT5G13870 36.213 301 169 9 13 304 1 287 5.14e-58 188
MS.gene049783.t1 AT5G13870 36.213 301 169 9 13 304 1 287 5.14e-58 188
MS.gene049783.t1 AT5G13870 36.213 301 169 9 13 304 1 287 5.14e-58 188
MS.gene049783.t1 AT2G06850 37.545 277 148 7 41 304 26 290 1.27e-57 187
MS.gene049783.t1 AT2G18800 40.000 280 132 9 50 304 28 296 3.69e-56 184
MS.gene049783.t1 AT4G30290 44.397 232 112 8 79 304 56 276 8.33e-56 182
MS.gene049783.t1 AT2G14620 37.591 274 152 8 42 304 29 294 1.08e-55 182
MS.gene049783.t1 AT5G48070 42.324 241 122 7 70 304 52 281 1.17e-55 182
MS.gene049783.t1 AT1G65310 44.589 231 113 7 79 304 61 281 1.24e-55 182
MS.gene049783.t1 AT4G30280 43.966 232 113 7 79 304 61 281 1.39e-55 182
MS.gene049783.t1 AT1G65310 44.589 231 113 7 79 304 83 303 1.78e-55 182
MS.gene049783.t1 AT4G30270 38.911 257 133 6 45 296 19 256 3.12e-55 180
MS.gene049783.t1 AT4G28850 36.567 268 148 8 50 304 29 287 3.35e-55 181
MS.gene049783.t1 AT4G03210 36.466 266 142 7 45 296 24 276 1.14e-54 179
MS.gene049783.t1 AT4G13080 35.738 305 174 10 8 304 1 291 1.83e-54 179
MS.gene049783.t1 AT2G06850 39.496 238 121 6 78 304 5 230 1.85e-54 177
MS.gene049783.t1 AT4G18990 41.395 215 104 3 109 304 27 238 2.51e-53 176
MS.gene049783.t1 AT4G03210 38.683 243 119 8 68 296 22 248 1.65e-50 168
MS.gene049783.t1 AT2G14620 38.298 235 128 7 79 304 18 244 2.17e-50 167
MS.gene049783.t1 AT2G14620 39.013 223 119 7 91 304 19 233 9.16e-48 160
MS.gene049783.t1 AT3G48580 34.483 261 148 8 48 304 32 273 5.07e-43 149
MS.gene049783.t1 AT3G48580 35.652 230 126 7 78 304 4 214 1.81e-38 135
MS.gene049783.t1 AT3G48580 30.651 261 138 9 48 304 32 253 2.04e-27 107

Find 94 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGATATAGGACTAATTT+TGG 0.185487 4.2:-46218292 None:intergenic
GTACTTTCACTCACAATATT+TGG 0.207363 4.2:+46218225 MS.gene049783:CDS
ACCAAAGCTCTTTAACAATA+TGG 0.236790 4.2:+46218361 MS.gene049783:CDS
TGTACCTCTATGGATCAATT+TGG 0.239308 4.2:+46220255 MS.gene049783:CDS
TTTCCTAGGATACCTTCTTA+TGG 0.241540 4.2:-46220204 None:intergenic
TTCACAACTATGCTATTCTA+TGG 0.244124 4.2:+46219077 MS.gene049783:CDS
GAGAGATGCAATTTCATCTT+TGG 0.276027 4.2:+46219035 MS.gene049783:CDS
AGTGGAGATGGGAACATTAT+AGG 0.280457 4.2:+46219010 MS.gene049783:CDS
CATGGTTTCCTGGGTGGTCT+TGG 0.287820 4.2:-46218910 None:intergenic
CAATTTGGGATGCATCTTCT+TGG 0.289378 4.2:+46220270 MS.gene049783:CDS
GAAATTGACATTGAGTTTCT+TGG 0.309148 4.2:+46218935 MS.gene049783:CDS
ATCCTTTAATTTCTTCCATA+TGG 0.312822 4.2:+46218182 MS.gene049783:CDS
AACCATATGGAAGAAATTAA+AGG 0.323802 4.2:-46218184 None:intergenic
TTCCTAGGATACCTTCTTAT+GGG 0.333401 4.2:-46220203 None:intergenic
GTCAAGGCTTTAGAAACCTT+TGG 0.340815 4.2:+46218316 MS.gene049783:CDS
TCAAGGCTTTAGAAACCTTT+GGG 0.341002 4.2:+46218317 MS.gene049783:CDS
GCCATATTGTTAAAGAGCTT+TGG 0.354218 4.2:-46218362 None:intergenic
ACATTTGTTTGCAACACATA+TGG 0.370453 4.2:-46218974 None:intergenic
TATAAATACCAACCCTTTGT+TGG 0.371158 4.2:+46220323 MS.gene049783:CDS
ACAAGACCAATGTACCTCTA+TGG 0.373562 4.2:+46220245 MS.gene049783:CDS
TCACTTCACTCTTATAAATC+TGG 0.378296 4.2:+46218562 MS.gene049783:CDS
AATATTTGGTTCTAATGCTC+AGG 0.382160 4.2:+46218239 MS.gene049783:CDS
TGTAAACCAAGTACTTGCTT+TGG 0.384616 4.2:-46220472 None:intergenic
AATCTTATCCCTGAGTGTTA+AGG 0.386720 4.2:+46220524 MS.gene049783:CDS
TCAATTTCATCATGGTTTCC+TGG 0.388697 4.2:-46218920 None:intergenic
ATCTTATCCCTGAGTGTTAA+GGG 0.397537 4.2:+46220525 MS.gene049783:CDS
TAGAGGTACATTGGTCTTGT+AGG 0.397941 4.2:-46220242 None:intergenic
TCTGTCTCTCCATCTGGATA+TGG 0.412154 4.2:+46220410 MS.gene049783:CDS
AATTTGGGATGCATCTTCTT+GGG 0.412238 4.2:+46220271 MS.gene049783:CDS
CAATTTCATCATGGTTTCCT+GGG 0.412270 4.2:-46218919 None:intergenic
TCTTATAAATCTGGATACTT+TGG 0.415834 4.2:+46218571 MS.gene049783:CDS
AAGCCTTGACTAAAGGATAT+AGG 0.421615 4.2:-46218303 None:intergenic
GTACCTCTATGGATCAATTT+GGG 0.422701 4.2:+46220256 MS.gene049783:CDS
AATTAATTACATTATCTCAC+TGG 0.423947 4.2:-46219104 None:intergenic
TTAAAGGATTGAGATGATAA+TGG 0.428982 4.2:-46218168 None:intergenic
GGGACCTCAACATCAAAGAT+TGG 0.445332 4.2:+46218338 MS.gene049783:CDS
TCACCATCTGTCTCTCCATC+TGG 0.448304 4.2:+46220404 MS.gene049783:CDS
GTTTCTAAAGCCTTGACTAA+AGG 0.455469 4.2:-46218310 None:intergenic
AATGTATATATGAGAGGAAG+TGG 0.455749 4.2:+46218992 MS.gene049783:CDS
TATATGAGAGGAAGTGGAGA+TGG 0.457663 4.2:+46218998 MS.gene049783:CDS
TGGTCCAATCTTTGATGTTG+AGG 0.457917 4.2:-46218342 None:intergenic
AGTACAACAAAAGAGAAGAT+AGG 0.470221 4.2:-46218207 None:intergenic
ATGGGTCCAAAGCAAGTACT+TGG 0.471019 4.2:+46220466 MS.gene049783:CDS
CTTCATCCTGGCTATACTGC+TGG 0.471632 4.2:+46218607 MS.gene049783:CDS
TCTTCTTGGGCAACAGAAGA+TGG 0.480591 4.2:+46220284 MS.gene049783:CDS
ATGGAGAGACAGATGGTGAT+TGG 0.482164 4.2:-46220400 None:intergenic
AATACCAACCCTTTGTTGGA+AGG 0.490727 4.2:+46220327 MS.gene049783:CDS
CCATGTATTGTTGAGGGCTA+AGG 0.494903 4.2:-46220436 None:intergenic
GCATGAGGCAGGACTTTGAA+TGG 0.495766 4.2:-46220378 None:intergenic
ACTCAATGTCAATTTCATCA+TGG 0.496342 4.2:-46218928 None:intergenic
TGCAACACATATGGCTTACC+AGG 0.497957 4.2:-46218965 None:intergenic
ACAATACATGGCCATGCAAT+GGG 0.506097 4.2:+46220448 MS.gene049783:CDS
ATATGAGAGGAAGTGGAGAT+GGG 0.508599 4.2:+46218999 MS.gene049783:CDS
AACAATACATGGCCATGCAA+TGG 0.508700 4.2:+46220447 MS.gene049783:CDS
AAGAGAAGATAGGAACCATA+TGG 0.510217 4.2:-46218197 None:intergenic
GATGGTGATTGGCATGAGGC+AGG 0.523915 4.2:-46220389 None:intergenic
CCTTAGCCCTCAACAATACA+TGG 0.524925 4.2:+46220436 MS.gene049783:CDS
TACACAAACTTCAAATTACA+AGG 0.530357 4.2:+46220350 MS.gene049783:CDS
GAGTTTCTTGGAACAACACC+TGG 0.531284 4.2:+46218947 MS.gene049783:CDS
TTTGTGTACCTTCCAACAAA+GGG 0.532308 4.2:-46220335 None:intergenic
ATTAATTACATTATCTCACT+GGG 0.537043 4.2:-46219103 None:intergenic
AACACTCAGGGATAAGATTG+TGG 0.539679 4.2:-46220520 None:intergenic
CATTGGTCTTGTAGGGTAGG+TGG 0.540734 4.2:-46220234 None:intergenic
TGCCCATAAGAAGGTATCCT+AGG 0.542748 4.2:+46220201 MS.gene049783:CDS
TGCATGGCCATGTATTGTTG+AGG 0.546522 4.2:-46220443 None:intergenic
AGAGGTACATTGGTCTTGTA+GGG 0.546713 4.2:-46220241 None:intergenic
GCTCAGGGTCCACCTTCACC+TGG 0.548929 4.2:+46218255 MS.gene049783:CDS
TTTCATCATGGTTTCCTGGG+TGG 0.551916 4.2:-46218916 None:intergenic
ATATGGCTTGACTCTAACTC+AGG 0.552550 4.2:+46218378 MS.gene049783:CDS
GTTTGTGTACCTTCCAACAA+AGG 0.558155 4.2:-46220336 None:intergenic
TAGATGATGTGCCCATAAGA+AGG 0.560691 4.2:+46220192 MS.gene049783:CDS
GCATGGCCATGTATTGTTGA+GGG 0.561198 4.2:-46220442 None:intergenic
ATAACTCCAGCAGTATAGCC+AGG 0.564593 4.2:-46218613 None:intergenic
GTACATTGGTCTTGTAGGGT+AGG 0.564835 4.2:-46220237 None:intergenic
CATCCCAAATTGATCCATAG+AGG 0.566589 4.2:-46220259 None:intergenic
CTTGCTTTGGACCCATTGCA+TGG 0.567532 4.2:-46220459 None:intergenic
ATATTTGGTTCTAATGCTCA+GGG 0.574778 4.2:+46218240 MS.gene049783:CDS
AGTCCTATATCCTTTAGTCA+AGG 0.575832 4.2:+46218300 MS.gene049783:CDS
ATTGATCCATAGAGGTACAT+TGG 0.579275 4.2:-46220251 None:intergenic
TGTACCTTCCAACAAAGGGT+TGG 0.580266 4.2:-46220331 None:intergenic
CAAACAAATGTATATATGAG+AGG 0.581790 4.2:+46218986 MS.gene049783:CDS
TTGGAACTAGGGTAGTAGCC+AGG 0.581986 4.2:-46218273 None:intergenic
TAGTTGTGAAAATCTTGAGT+TGG 0.590085 4.2:-46219064 None:intergenic
AACAATACCCTTAACACTCA+GGG 0.593619 4.2:-46220532 None:intergenic
CTAGGGTAGTAGCCAGGTGA+AGG 0.595243 4.2:-46218267 None:intergenic
GAACAATACCCTTAACACTC+AGG 0.596917 4.2:-46220533 None:intergenic
CAAGGCTTTAGAAACCTTTG+GGG 0.599359 4.2:+46218318 MS.gene049783:CDS
GGGTAGTAGCCAGGTGAAGG+TGG 0.600430 4.2:-46218264 None:intergenic
TTTGATGTTGAGGTCCCCAA+AGG 0.607697 4.2:-46218332 None:intergenic
GCTGCAATTAAGCTTCATCC+TGG 0.612073 4.2:+46218595 MS.gene049783:CDS
CTAAGGCTACCATATCCAGA+TGG 0.643351 4.2:-46220419 None:intergenic
GACAGATGGTGATTGGCATG+AGG 0.650748 4.2:-46220393 None:intergenic
TATCCAGATGGAGAGACAGA+TGG 0.652307 4.2:-46220407 None:intergenic
TCAAATAACCAAGACCACCC+AGG 0.655652 4.2:+46218902 MS.gene049783:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGTAAAATACAAT+TGG + chr4.2:46219908-46219927 MS.gene049783:intron 10.0%
!! GATAAATTAAAATTTAGATG+AGG + chr4.2:46219590-46219609 MS.gene049783:intron 15.0%
!! TTTATATTTGTGAAACAAAA+TGG - chr4.2:46219230-46219249 None:intergenic 15.0%
!!! GGATAAAATTAATTTTTTTG+CGG - chr4.2:46218758-46218777 None:intergenic 15.0%
!!! TTTCTAAAAGTTTGTTTATT+AGG - chr4.2:46219290-46219309 None:intergenic 15.0%
!! AAATTAAAATTTAGATGAGG+TGG + chr4.2:46219593-46219612 MS.gene049783:intron 20.0%
!! AATTAAAATTTAGATGAGGT+GGG + chr4.2:46219594-46219613 MS.gene049783:intron 20.0%
!! AATTAATTACATTATCTCAC+TGG - chr4.2:46219107-46219126 None:intergenic 20.0%
!! ATTAATTACATTATCTCACT+GGG - chr4.2:46219106-46219125 None:intergenic 20.0%
!! GTAATTATGTGTCATATTTA+TGG + chr4.2:46219175-46219194 MS.gene049783:intron 20.0%
!! TCATATATCACATTATTAGA+TGG + chr4.2:46220046-46220065 MS.gene049783:intron 20.0%
!!! AAAATATCGGTATAATCTTT+TGG - chr4.2:46220012-46220031 None:intergenic 20.0%
!!! ATTGTTTTAATGATTAGTAC+AGG - chr4.2:46220088-46220107 None:intergenic 20.0%
!!! ATTTTATACGAATTAAGAGA+CGG - chr4.2:46218779-46218798 None:intergenic 20.0%
!!! TGATGATTAGTCAAAAATAT+CGG - chr4.2:46220025-46220044 None:intergenic 20.0%
! AACCATATGGAAGAAATTAA+AGG - chr4.2:46218187-46218206 None:intergenic 25.0%
! AGGAAATAAAAACGATAAGA+TGG + chr4.2:46219549-46219568 MS.gene049783:intron 25.0%
! CAAACAAATGTATATATGAG+AGG + chr4.2:46218986-46219005 MS.gene049783:CDS 25.0%
! TACACAAACTTCAAATTACA+AGG + chr4.2:46220350-46220369 MS.gene049783:CDS 25.0%
! TATTCTTATGAGATGTGAAT+CGG + chr4.2:46219713-46219732 MS.gene049783:intron 25.0%
! TCTTATAAATCTGGATACTT+TGG + chr4.2:46218571-46218590 MS.gene049783:CDS 25.0%
! TTAAAGGATTGAGATGATAA+TGG - chr4.2:46218171-46218190 None:intergenic 25.0%
!! AAAGGATATAGGACTAATTT+TGG - chr4.2:46218295-46218314 None:intergenic 25.0%
!! ATCCTTTAATTTCTTCCATA+TGG + chr4.2:46218182-46218201 MS.gene049783:CDS 25.0%
!! CTAACTAGTTTGTCTTATAA+TGG + chr4.2:46220144-46220163 MS.gene049783:intron 25.0%
!! TAGCATTAGAATTTTGTTGA+TGG - chr4.2:46219678-46219697 None:intergenic 25.0%
!!! ACTATTGGATCTCTTTTTTA+GGG + chr4.2:46219971-46219990 MS.gene049783:intron 25.0%
AAATGACTTATATCGTGAGA+CGG - chr4.2:46218683-46218702 None:intergenic 30.0%
AATGTATATATGAGAGGAAG+TGG + chr4.2:46218992-46219011 MS.gene049783:CDS 30.0%
ACATTTGTTTGCAACACATA+TGG - chr4.2:46218977-46218996 None:intergenic 30.0%
ACCAAAGCTCTTTAACAATA+TGG + chr4.2:46218361-46218380 MS.gene049783:CDS 30.0%
ACTCAATGTCAATTTCATCA+TGG - chr4.2:46218931-46218950 None:intergenic 30.0%
AGTACAACAAAAGAGAAGAT+AGG - chr4.2:46218210-46218229 None:intergenic 30.0%
ATTGATAAAGACACGTGAAT+AGG - chr4.2:46219420-46219439 None:intergenic 30.0%
GAAATTGACATTGAGTTTCT+TGG + chr4.2:46218935-46218954 MS.gene049783:CDS 30.0%
GAGATACAATTGGAAAGAAA+AGG + chr4.2:46219529-46219548 MS.gene049783:intron 30.0%
GTACTTTCACTCACAATATT+TGG + chr4.2:46218225-46218244 MS.gene049783:CDS 30.0%
TAGTTGTGAAAATCTTGAGT+TGG - chr4.2:46219067-46219086 None:intergenic 30.0%
TATAAATACCAACCCTTTGT+TGG + chr4.2:46220323-46220342 MS.gene049783:CDS 30.0%
TCACTTCACTCTTATAAATC+TGG + chr4.2:46218562-46218581 MS.gene049783:CDS 30.0%
TGAATCGGCTATTTATCAAT+CGG + chr4.2:46219728-46219747 MS.gene049783:intron 30.0%
TTCACAACTATGCTATTCTA+TGG + chr4.2:46219077-46219096 MS.gene049783:CDS 30.0%
!! AATATTTGGTTCTAATGCTC+AGG + chr4.2:46218239-46218258 MS.gene049783:CDS 30.0%
!! ATATTTGGTTCTAATGCTCA+GGG + chr4.2:46218240-46218259 MS.gene049783:CDS 30.0%
!! TCTGCTTTGAGCTTTATTAT+CGG + chr4.2:46218452-46218471 MS.gene049783:intron 30.0%
!!! ACTTGAAACTTTTGAAACAC+AGG + chr4.2:46218526-46218545 MS.gene049783:intron 30.0%
!!! ATAGGACTAATTTTGGAACT+AGG - chr4.2:46218288-46218307 None:intergenic 30.0%
!!! CACTATTGGATCTCTTTTTT+AGG + chr4.2:46219970-46219989 MS.gene049783:intron 30.0%
!!! CTATTGGATCTCTTTTTTAG+GGG + chr4.2:46219972-46219991 MS.gene049783:intron 30.0%
!!! TAGGACTAATTTTGGAACTA+GGG - chr4.2:46218287-46218306 None:intergenic 30.0%
AAGAGAAGATAGGAACCATA+TGG - chr4.2:46218200-46218219 None:intergenic 35.0%
AAGCCTTGACTAAAGGATAT+AGG - chr4.2:46218306-46218325 None:intergenic 35.0%
AGAGAACTGAGAGATACAAT+TGG + chr4.2:46219519-46219538 MS.gene049783:intron 35.0%
AGTCCTATATCCTTTAGTCA+AGG + chr4.2:46218300-46218319 MS.gene049783:CDS 35.0%
CAATTTCATCATGGTTTCCT+GGG - chr4.2:46218922-46218941 None:intergenic 35.0%
CCAATAGTGAATGCAATAGT+AGG - chr4.2:46219959-46219978 None:intergenic 35.0%
CCTACTATTGCATTCACTAT+TGG + chr4.2:46219956-46219975 MS.gene049783:intron 35.0%
GAGAGATGCAATTTCATCTT+TGG + chr4.2:46219035-46219054 MS.gene049783:CDS 35.0%
GCCATATTGTTAAAGAGCTT+TGG - chr4.2:46218365-46218384 None:intergenic 35.0%
GTACCTCTATGGATCAATTT+GGG + chr4.2:46220256-46220275 MS.gene049783:CDS 35.0%
TCAATTTCATCATGGTTTCC+TGG - chr4.2:46218923-46218942 None:intergenic 35.0%
TGTAAACCAAGTACTTGCTT+TGG - chr4.2:46220475-46220494 None:intergenic 35.0%
TGTACCTCTATGGATCAATT+TGG + chr4.2:46220255-46220274 MS.gene049783:CDS 35.0%
TTCCTAGGATACCTTCTTAT+GGG - chr4.2:46220206-46220225 None:intergenic 35.0%
TTTCCTAGGATACCTTCTTA+TGG - chr4.2:46220207-46220226 None:intergenic 35.0%
TTTGTGTACCTTCCAACAAA+GGG - chr4.2:46220338-46220357 None:intergenic 35.0%
! AATTTGGGATGCATCTTCTT+GGG + chr4.2:46220271-46220290 MS.gene049783:CDS 35.0%
! ATTGATCCATAGAGGTACAT+TGG - chr4.2:46220254-46220273 None:intergenic 35.0%
!! GTTTCTAAAGCCTTGACTAA+AGG - chr4.2:46218313-46218332 None:intergenic 35.0%
!! TCAAGGCTTTAGAAACCTTT+GGG + chr4.2:46218317-46218336 MS.gene049783:CDS 35.0%
!!! AACTTTTGAAACACAGGTAG+TGG + chr4.2:46218532-46218551 MS.gene049783:intron 35.0%
!!! AGTTTTTTTCTCTTCGCCAT+TGG - chr4.2:46219762-46219781 None:intergenic 35.0%
!!! TCTTTTTTAGGGGCGTATTA+GGG + chr4.2:46219982-46220001 MS.gene049783:intron 35.0%
AACAATACATGGCCATGCAA+TGG + chr4.2:46220447-46220466 MS.gene049783:CDS 40.0%
AACACTCAGGGATAAGATTG+TGG - chr4.2:46220523-46220542 None:intergenic 40.0%
AATACCAACCCTTTGTTGGA+AGG + chr4.2:46220327-46220346 MS.gene049783:CDS 40.0%
ACAAGACCAATGTACCTCTA+TGG + chr4.2:46220245-46220264 MS.gene049783:CDS 40.0%
ACAATACATGGCCATGCAAT+GGG + chr4.2:46220448-46220467 MS.gene049783:CDS 40.0%
AGTGGAGATGGGAACATTAT+AGG + chr4.2:46219010-46219029 MS.gene049783:CDS 40.0%
ATATGAGAGGAAGTGGAGAT+GGG + chr4.2:46218999-46219018 MS.gene049783:CDS 40.0%
ATATGGCTTGACTCTAACTC+AGG + chr4.2:46218378-46218397 MS.gene049783:CDS 40.0%
CATCCCAAATTGATCCATAG+AGG - chr4.2:46220262-46220281 None:intergenic 40.0%
GTTTGTGTACCTTCCAACAA+AGG - chr4.2:46220339-46220358 None:intergenic 40.0%
TAGATGATGTGCCCATAAGA+AGG + chr4.2:46220192-46220211 MS.gene049783:CDS 40.0%
TATATGAGAGGAAGTGGAGA+TGG + chr4.2:46218998-46219017 MS.gene049783:CDS 40.0%
TGGTCCAATCTTTGATGTTG+AGG - chr4.2:46218345-46218364 None:intergenic 40.0%
! CAATTTGGGATGCATCTTCT+TGG + chr4.2:46220270-46220289 MS.gene049783:CDS 40.0%
!! AGAGGTACATTGGTCTTGTA+GGG - chr4.2:46220244-46220263 None:intergenic 40.0%
!! CAAGGCTTTAGAAACCTTTG+GGG + chr4.2:46218318-46218337 MS.gene049783:CDS 40.0%
!! GTCAAGGCTTTAGAAACCTT+TGG + chr4.2:46218316-46218335 MS.gene049783:CDS 40.0%
!! TAGAGGTACATTGGTCTTGT+AGG - chr4.2:46220245-46220264 None:intergenic 40.0%
!!! CTCTTTTTTAGGGGCGTATT+AGG + chr4.2:46219981-46220000 MS.gene049783:intron 40.0%
!!! TTTTTTCTCTTCGCCATTGG+AGG - chr4.2:46219759-46219778 None:intergenic 40.0%
ATAACTCCAGCAGTATAGCC+AGG - chr4.2:46218616-46218635 None:intergenic 45.0%
ATGGAGAGACAGATGGTGAT+TGG - chr4.2:46220403-46220422 None:intergenic 45.0%
ATGGGTCCAAAGCAAGTACT+TGG + chr4.2:46220466-46220485 MS.gene049783:CDS 45.0%
CCATGTATTGTTGAGGGCTA+AGG - chr4.2:46220439-46220458 None:intergenic 45.0%
CCTTAGCCCTCAACAATACA+TGG + chr4.2:46220436-46220455 MS.gene049783:CDS 45.0%
CTAAGGCTACCATATCCAGA+TGG - chr4.2:46220422-46220441 None:intergenic 45.0%
GAGTTTCTTGGAACAACACC+TGG + chr4.2:46218947-46218966 MS.gene049783:CDS 45.0%
GCATGGCCATGTATTGTTGA+GGG - chr4.2:46220445-46220464 None:intergenic 45.0%
GCTGCAATTAAGCTTCATCC+TGG + chr4.2:46218595-46218614 MS.gene049783:CDS 45.0%
GGGACCTCAACATCAAAGAT+TGG + chr4.2:46218338-46218357 MS.gene049783:CDS 45.0%
TATCCAGATGGAGAGACAGA+TGG - chr4.2:46220410-46220429 None:intergenic 45.0%
TCAAATAACCAAGACCACCC+AGG + chr4.2:46218902-46218921 MS.gene049783:CDS 45.0%
TCTGTCTCTCCATCTGGATA+TGG + chr4.2:46220410-46220429 MS.gene049783:CDS 45.0%
TCTTCTTGGGCAACAGAAGA+TGG + chr4.2:46220284-46220303 MS.gene049783:CDS 45.0%
TGCAACACATATGGCTTACC+AGG - chr4.2:46218968-46218987 None:intergenic 45.0%
TGCATGGCCATGTATTGTTG+AGG - chr4.2:46220446-46220465 None:intergenic 45.0%
TGTACCTTCCAACAAAGGGT+TGG - chr4.2:46220334-46220353 None:intergenic 45.0%
TTTCATCATGGTTTCCTGGG+TGG - chr4.2:46218919-46218938 None:intergenic 45.0%
TTTGATGTTGAGGTCCCCAA+AGG - chr4.2:46218335-46218354 None:intergenic 45.0%
! TCAATCGGTTCAACCTCCAA+TGG + chr4.2:46219743-46219762 MS.gene049783:intron 45.0%
!! GTACATTGGTCTTGTAGGGT+AGG - chr4.2:46220240-46220259 None:intergenic 45.0%
!! TAGGTGGCATCACTTTTCCT+AGG - chr4.2:46220221-46220240 None:intergenic 45.0%
!! TGCCCATAAGAAGGTATCCT+AGG + chr4.2:46220201-46220220 MS.gene049783:CDS 45.0%
CTTCATCCTGGCTATACTGC+TGG + chr4.2:46218607-46218626 MS.gene049783:CDS 50.0%
GACAGATGGTGATTGGCATG+AGG - chr4.2:46220396-46220415 None:intergenic 50.0%
GCATGAGGCAGGACTTTGAA+TGG - chr4.2:46220381-46220400 None:intergenic 50.0%
GTGGGTCTCAGAGTTCGTTA+GGG + chr4.2:46219612-46219631 MS.gene049783:intron 50.0%
TCACCATCTGTCTCTCCATC+TGG + chr4.2:46220404-46220423 MS.gene049783:CDS 50.0%
TTGGAACTAGGGTAGTAGCC+AGG - chr4.2:46218276-46218295 None:intergenic 50.0%
! CTTGCTTTGGACCCATTGCA+TGG - chr4.2:46220462-46220481 None:intergenic 50.0%
!! CATTGGTCTTGTAGGGTAGG+TGG - chr4.2:46220237-46220256 None:intergenic 50.0%
CATGGTTTCCTGGGTGGTCT+TGG - chr4.2:46218913-46218932 None:intergenic 55.0%
CTAGGGTAGTAGCCAGGTGA+AGG - chr4.2:46218270-46218289 None:intergenic 55.0%
GATGGTGATTGGCATGAGGC+AGG - chr4.2:46220392-46220411 None:intergenic 55.0%
GGTGGGTCTCAGAGTTCGTT+AGG + chr4.2:46219611-46219630 MS.gene049783:intron 55.0%
GGGTAGTAGCCAGGTGAAGG+TGG - chr4.2:46218267-46218286 None:intergenic 60.0%
GCTCAGGGTCCACCTTCACC+TGG + chr4.2:46218255-46218274 MS.gene049783:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 46218165 46220544 46218165 ID=MS.gene049783
chr4.2 mRNA 46218165 46220544 46218165 ID=MS.gene049783.t1;Parent=MS.gene049783
chr4.2 exon 46218165 46218399 46218165 ID=MS.gene049783.t1.exon1;Parent=MS.gene049783.t1
chr4.2 CDS 46218165 46218399 46218165 ID=cds.MS.gene049783.t1;Parent=MS.gene049783.t1
chr4.2 exon 46218548 46218648 46218548 ID=MS.gene049783.t1.exon2;Parent=MS.gene049783.t1
chr4.2 CDS 46218548 46218648 46218548 ID=cds.MS.gene049783.t1;Parent=MS.gene049783.t1
chr4.2 exon 46218899 46219116 46218899 ID=MS.gene049783.t1.exon3;Parent=MS.gene049783.t1
chr4.2 CDS 46218899 46219116 46218899 ID=cds.MS.gene049783.t1;Parent=MS.gene049783.t1
chr4.2 exon 46220184 46220544 46220184 ID=MS.gene049783.t1.exon4;Parent=MS.gene049783.t1
chr4.2 CDS 46220184 46220544 46220184 ID=cds.MS.gene049783.t1;Parent=MS.gene049783.t1
Gene Sequence

>MS.gene049783

ATGCCATTATCATCTCAATCCTTTAATTTCTTCCATATGGTTCCTATCTTCTCTTTTGTTGTACTTTCACTCACAATATTTGGTTCTAATGCTCAGGGTCCACCTTCACCTGGCTACTACCCTAGTTCCAAAATTAGTCCTATATCCTTTAGTCAAGGCTTTAGAAACCTTTGGGGACCTCAACATCAAAGATTGGACCAAAGCTCTTTAACAATATGGCTTGACTCTAACTCAGGTATGTAAATTAATAAAGCTCAGAGCAGACAATATCTCAGACTGAGATATTGTCTGCTTTGAGCTTTATTATCGGACTCTCACTGAGTATGTAAACTTGTCTCACTAATATATAGTTTAACTTTAAACTTGAAACTTTTGAAACACAGGTAGTGGATTCAAGTCACTTCACTCTTATAAATCTGGATACTTTGGTGCTGCAATTAAGCTTCATCCTGGCTATACTGCTGGAGTTATTACTTCTCTCTATGTAAGTTTGACTAATGTTGAAAATTACTTCTCCGTCTCACGATATAAGTCATTTTAGTAAACAAAAACGTCGTCTTATTTTATATGTCATTTGAGCGAAAATTGTTCCGCAAAAAAATTAATTTTATCCGTCTCTTAATTCGTATAAAATTTAATAAAACGACTTATATCGTGAGAACGAGTTATTAAATCTATTTCTTGAAATGCAAATTTGTTTTTTTTTTAATATTATTTCTATATTGTAATTGCAGCTTTCAAATAACCAAGACCACCCAGGAAACCATGATGAAATTGACATTGAGTTTCTTGGAACAACACCTGGTAAGCCATATGTGTTGCAAACAAATGTATATATGAGAGGAAGTGGAGATGGGAACATTATAGGAAGAGAGATGCAATTTCATCTTTGGTTTGATCCAACTCAAGATTTTCACAACTATGCTATTCTATGGAAACCCAGTGAGATAATGTAATTAATTTTTTTCATTCATTCTCATGCTTATTATTGATCATTTTCATCAACATCAGTAATTATGTGTCATATTTATGGCTATGTCACAATAATTCTGTTGAAAAAGACCATTTTGTTTCACAAATATAAATATGATGTAAAAATCATATAGTCTGCATGATTTTTTGCCTAATAAACAAACTTTTAGAAATATCAATTCATTGAGTGAATACAAATAATATATCAATTCATGTCATGTTAGTTGAAATGAAAGACAATATTTTAATATAAGAATGAGTGAATTTGTGCATAGTTAAACCTATTCACGTGTCTTTATCAATCAATCTATTTGAGCTTTTGCAAGAGTTGTTTATGACAAATAAAAGTAGAAAGAGAGCGAAAGAAAAGAAAAATAAATAGAGAGAACTGAGAGATACAATTGGAAAGAAAAGGAAATAAAAACGATAAGATGGAACAAAAATATATTTTTAGATAAATTAAAATTTAGATGAGGTGGGTCTCAGAGTTCGTTAGGGTAGAGTTCAAAAAATATTTAAAAAGATAATTACATGTTATCCATCAACAAAATTCTAATGCTATAGAAATTGAACACATATTCTTATGAGATGTGAATCGGCTATTTATCAATCGGTTCAACCTCCAATGGCGAAGAGAAAAAAACTTAAAACATTAAAATTATACTTCTATTTAATGACACAATAAAAAAAAAAGCTTTACACACAATATGTTTAATCATATTTATCATTTAAATAATTGTACACTTAATCTAGAGAATTCAATAAAATAAAAATATATAGTAAAATACAATTGGACGTTTGTATAAAAGAAGATATTAACCTACTATTGCATTCACTATTGGATCTCTTTTTTAGGGGCGTATTAGGGACATCCAAAAGATTATACCGATATTTTTGACTAATCATCATTCATATATCACATTATTAGATGGTGACTATGATTTTTCACCTGTACTAATCATTAAAACAATTTAAAATCTTGCTTGTGAATCTAGTTTTATTGTTTGCTAACTAGTTTGTCTTATAATGGAAAAACAACAAATGCAGATTTTTAGTAGATGATGTGCCCATAAGAAGGTATCCTAGGAAAAGTGATGCCACCTACCCTACAAGACCAATGTACCTCTATGGATCAATTTGGGATGCATCTTCTTGGGCAACAGAAGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTTGTTGGAAGGTACACAAACTTCAAATTACAAGGTTGTACCATTCAAAGTCCTGCCTCATGCCAATCACCATCTGTCTCTCCATCTGGATATGGTAGCCTTAGCCCTCAACAATACATGGCCATGCAATGGGTCCAAAGCAAGTACTTGGTTTACAATTATTGTCATGACTCTAAAAGAAACCACAATCTTATCCCTGAGTGTTAA
Protein sequence

>MS.gene049783.t1

MPLSSQSFNFFHMVPIFSFVVLSLTIFGSNAQGPPSPGYYPSSKISPISFSQGFRNLWGPQHQRLDQSSLTIWLDSNSGSGFKSLHSYKSGYFGAAIKLHPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYMRGSGDGNIIGREMQFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATYPTRPMYLYGSIWDASSWATEDGKYKADYKYQPFVGRYTNFKLQGCTIQSPASCQSPSVSPSGYGSLSPQQYMAMQWVQSKYLVYNYCHDSKRNHNLIPEC