AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09167

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09167.t1 MTR_4g057450 98.684 304 4 0 1 304 1 304 0.0 624
MS.gene09167.t1 MTR_2g095800 76.451 293 67 2 13 304 18 309 3.13e-168 469
MS.gene09167.t1 MTR_7g102260 70.790 291 85 0 14 304 1 291 3.47e-158 443
MS.gene09167.t1 MTR_1g063020 69.204 289 89 0 16 304 6 294 2.11e-153 431
MS.gene09167.t1 MTR_1g033420 42.754 276 143 5 41 304 19 291 3.84e-72 226
MS.gene09167.t1 MTR_8g064180 41.639 305 157 8 17 304 10 310 5.22e-67 212
MS.gene09167.t1 MTR_5g029100 38.971 272 151 4 45 304 37 305 2.24e-65 209
MS.gene09167.t1 MTR_8g090100 39.350 277 150 8 40 304 11 281 3.14e-63 202
MS.gene09167.t1 MTR_4g128410 41.509 265 138 7 49 304 24 280 3.49e-62 199
MS.gene09167.t1 MTR_5g091730 44.118 238 119 6 71 304 51 278 1.39e-61 197
MS.gene09167.t1 MTR_5g029100 41.277 235 125 3 80 304 43 274 1.68e-61 198
MS.gene09167.t1 MTR_4g126920 41.729 266 137 6 49 304 24 281 1.32e-60 194
MS.gene09167.t1 MTR_3g089540 41.603 262 139 5 49 304 29 282 3.72e-60 194
MS.gene09167.t1 MTR_6g033085 36.789 299 156 8 19 304 9 287 3.77e-60 194
MS.gene09167.t1 MTR_6g088320 37.828 267 147 6 49 304 25 283 5.25e-60 193
MS.gene09167.t1 MTR_1g105495 36.066 305 168 9 11 304 6 294 1.56e-59 192
MS.gene09167.t1 MTR_1g105900 37.226 274 153 8 42 304 26 291 3.29e-59 191
MS.gene09167.t1 MTR_7g084770 37.906 277 147 7 41 304 23 287 3.29e-59 191
MS.gene09167.t1 MTR_7g084760 40.323 248 125 6 68 304 52 287 8.86e-59 190
MS.gene09167.t1 MTR_6g033055 35.786 299 159 8 19 304 9 287 2.31e-58 189
MS.gene09167.t1 MTR_7g093530 41.132 265 139 6 49 304 23 279 9.87e-58 187
MS.gene09167.t1 MTR_7g084750 36.242 298 164 9 16 304 7 287 1.41e-57 187
MS.gene09167.t1 MTR_3g084630 39.695 262 141 6 49 304 27 277 3.23e-57 186
MS.gene09167.t1 MTR_8g102910 39.700 267 142 7 49 304 21 279 3.89e-57 186
MS.gene09167.t1 MTR_3g084620 39.695 262 141 6 49 304 27 277 4.70e-57 185
MS.gene09167.t1 MTR_8g081040 40.840 262 139 6 49 304 30 281 7.53e-57 185
MS.gene09167.t1 MTR_4g128570 39.519 291 140 9 20 304 12 272 2.40e-56 183
MS.gene09167.t1 MTR_4g128580 39.405 269 142 6 49 304 25 285 2.52e-56 184
MS.gene09167.t1 MTR_4g128400 39.844 256 137 6 58 304 36 283 5.16e-56 183
MS.gene09167.t1 MTR_8g013055 38.931 262 138 7 46 296 27 277 1.09e-55 182
MS.gene09167.t1 MTR_4g097700 37.643 263 143 7 45 296 64 316 1.52e-55 183
MS.gene09167.t1 MTR_4g097640 37.594 266 151 7 47 304 29 287 1.80e-55 182
MS.gene09167.t1 MTR_4g097670 37.594 266 151 7 47 304 29 287 1.80e-55 182
MS.gene09167.t1 MTR_2g038860 39.464 261 137 5 49 296 25 277 2.51e-55 181
MS.gene09167.t1 MTR_2g038705 39.464 261 137 5 49 296 25 277 2.51e-55 181
MS.gene09167.t1 MTR_2g089140 34.182 275 158 5 45 304 20 286 9.90e-54 177
MS.gene09167.t1 MTR_4g045853 35.878 262 145 5 50 296 27 280 3.66e-53 176
MS.gene09167.t1 MTR_7g056090 38.889 270 144 10 43 304 25 281 9.89e-52 172
MS.gene09167.t1 MTR_8g102220 38.550 262 132 7 49 304 28 266 1.71e-51 171
MS.gene09167.t1 MTR_4g128590 35.127 316 149 10 3 304 2 275 6.57e-51 169
MS.gene09167.t1 MTR_2g049130 38.868 265 140 11 48 304 27 277 1.86e-50 168
MS.gene09167.t1 MTR_2g049030 34.505 313 159 13 1 304 1 276 8.92e-50 167
MS.gene09167.t1 MTR_2g089140 35.371 229 125 5 91 304 3 223 3.50e-47 158
MS.gene09167.t1 MTR_8g032640 32.967 182 107 6 68 246 31 200 2.76e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09167.t1 AT2G36870 70.408 294 81 2 13 304 8 297 7.98e-155 435
MS.gene09167.t1 AT3G44990 64.261 291 101 1 17 304 3 293 1.26e-138 394
MS.gene09167.t1 AT2G36870 71.429 175 44 2 13 185 8 178 2.49e-87 259
MS.gene09167.t1 AT1G32170 41.912 272 145 5 43 304 25 293 6.57e-71 223
MS.gene09167.t1 AT1G10550 36.755 302 172 4 19 304 11 309 3.27e-70 220
MS.gene09167.t1 AT4G18990 40.925 281 142 4 45 304 35 312 6.69e-70 221
MS.gene09167.t1 AT1G14720 39.731 297 161 7 16 304 4 290 1.33e-69 219
MS.gene09167.t1 AT2G01850 40.977 266 142 5 49 304 30 290 6.57e-67 213
MS.gene09167.t1 AT1G11545 40.000 270 141 7 49 304 37 299 3.59e-62 199
MS.gene09167.t1 AT3G25050 35.452 299 172 6 14 304 4 289 6.49e-62 198
MS.gene09167.t1 AT5G57530 41.852 270 138 8 45 304 22 282 2.46e-61 196
MS.gene09167.t1 AT5G57540 42.481 266 134 8 49 304 25 281 5.84e-61 196
MS.gene09167.t1 AT5G57550 40.659 273 143 9 42 304 19 282 1.59e-60 194
MS.gene09167.t1 AT4G14130 39.394 297 143 9 20 304 13 284 1.02e-59 192
MS.gene09167.t1 AT5G57560 40.520 269 138 9 49 304 22 281 1.38e-59 192
MS.gene09167.t1 AT4G13090 38.276 290 152 8 17 296 8 280 2.56e-59 191
MS.gene09167.t1 AT3G23730 39.777 269 141 7 49 304 26 286 3.33e-59 191
MS.gene09167.t1 AT4G37800 37.171 304 163 7 13 304 2 289 1.15e-58 190
MS.gene09167.t1 AT5G65730 39.098 266 147 7 47 304 32 290 1.29e-58 190
MS.gene09167.t1 AT4G25820 41.353 266 137 8 49 304 29 285 1.40e-58 189
MS.gene09167.t1 AT4G25810 42.222 270 131 11 49 304 25 283 1.67e-58 189
MS.gene09167.t1 AT5G13870 36.213 301 169 9 13 304 1 287 5.14e-58 188
MS.gene09167.t1 AT5G13870 36.213 301 169 9 13 304 1 287 5.14e-58 188
MS.gene09167.t1 AT5G13870 36.213 301 169 9 13 304 1 287 5.14e-58 188
MS.gene09167.t1 AT2G06850 37.545 277 148 7 41 304 26 290 1.27e-57 187
MS.gene09167.t1 AT2G18800 40.000 280 132 9 50 304 28 296 3.69e-56 184
MS.gene09167.t1 AT4G30290 44.397 232 112 8 79 304 56 276 8.33e-56 182
MS.gene09167.t1 AT2G14620 37.591 274 152 8 42 304 29 294 1.08e-55 182
MS.gene09167.t1 AT5G48070 42.324 241 122 7 70 304 52 281 1.17e-55 182
MS.gene09167.t1 AT1G65310 44.589 231 113 7 79 304 61 281 1.24e-55 182
MS.gene09167.t1 AT4G30280 43.966 232 113 7 79 304 61 281 1.39e-55 182
MS.gene09167.t1 AT1G65310 44.589 231 113 7 79 304 83 303 1.78e-55 182
MS.gene09167.t1 AT4G30270 38.911 257 133 6 45 296 19 256 3.12e-55 180
MS.gene09167.t1 AT4G28850 36.567 268 148 8 50 304 29 287 3.35e-55 181
MS.gene09167.t1 AT4G03210 36.466 266 142 7 45 296 24 276 1.14e-54 179
MS.gene09167.t1 AT4G13080 35.738 305 174 10 8 304 1 291 1.83e-54 179
MS.gene09167.t1 AT2G06850 39.496 238 121 6 78 304 5 230 1.85e-54 177
MS.gene09167.t1 AT4G18990 41.395 215 104 3 109 304 27 238 2.51e-53 176
MS.gene09167.t1 AT4G03210 38.683 243 119 8 68 296 22 248 1.65e-50 168
MS.gene09167.t1 AT2G14620 38.298 235 128 7 79 304 18 244 2.17e-50 167
MS.gene09167.t1 AT2G14620 39.013 223 119 7 91 304 19 233 9.16e-48 160
MS.gene09167.t1 AT3G48580 34.483 261 148 8 48 304 32 273 5.07e-43 149
MS.gene09167.t1 AT3G48580 35.652 230 126 7 78 304 4 214 1.81e-38 135
MS.gene09167.t1 AT3G48580 30.651 261 138 9 48 304 32 253 2.04e-27 107

Find 93 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGATATAGGACTAATTT+TGG 0.185487 4.3:-43576001 None:intergenic
GTACTTTCACTCACAATATT+TGG 0.207363 4.3:+43575934 MS.gene09167:CDS
TGTATCTCTATGGATCAATT+TGG 0.214876 4.3:+43577964 MS.gene09167:CDS
ACCAAAGCTCTTTAACAATA+TGG 0.236790 4.3:+43576070 MS.gene09167:CDS
TTTCCTAGGATACCTTCTTA+TGG 0.241540 4.3:-43577913 None:intergenic
TTCACAACTATGCTATTCTA+TGG 0.244124 4.3:+43576788 MS.gene09167:CDS
GAGAGATGCAATTTCATCTT+TGG 0.276027 4.3:+43576746 MS.gene09167:CDS
AGTGGAGATGGGAACATTAT+AGG 0.280457 4.3:+43576721 MS.gene09167:CDS
CATGGTTTCCTGGGTGGTCT+TGG 0.287820 4.3:-43576621 None:intergenic
CAATTTGGGATGCATCTTCT+TGG 0.289378 4.3:+43577979 MS.gene09167:CDS
GAAATTGACATTGAGTTTCT+TGG 0.309148 4.3:+43576646 MS.gene09167:CDS
ATCCTTTAATTTCTTCCATA+TGG 0.312822 4.3:+43575891 MS.gene09167:CDS
AACCATATGGAAGAAATTAA+AGG 0.323802 4.3:-43575893 None:intergenic
TTCCTAGGATACCTTCTTAT+GGG 0.333401 4.3:-43577912 None:intergenic
GTCAAGGCTTTAGAAACCTT+TGG 0.340815 4.3:+43576025 MS.gene09167:CDS
TCAAGGCTTTAGAAACCTTT+GGG 0.341002 4.3:+43576026 MS.gene09167:CDS
GCCATATTGTTAAAGAGCTT+TGG 0.354218 4.3:-43576071 None:intergenic
ACAAGACCAATGTATCTCTA+TGG 0.361143 4.3:+43577954 MS.gene09167:CDS
ACATTTGTTTGCAACACATA+TGG 0.370453 4.3:-43576685 None:intergenic
TATAAATACCAACCCTTTGT+TGG 0.371158 4.3:+43578032 MS.gene09167:CDS
TCACTTCACTCTTATAAATC+TGG 0.378296 4.3:+43576271 MS.gene09167:CDS
AATATTTGGTTCTAATGCTC+AGG 0.382160 4.3:+43575948 MS.gene09167:CDS
AATCTTATCCCTGAGTGTTA+AGG 0.383576 4.3:+43578233 MS.gene09167:CDS
TGTAAACCAAGTACTTGCTT+TGG 0.384616 4.3:-43578181 None:intergenic
TCAATTTCATCATGGTTTCC+TGG 0.388697 4.3:-43576631 None:intergenic
ATCTTATCCCTGAGTGTTAA+GGG 0.395098 4.3:+43578234 MS.gene09167:CDS
TAGAGATACATTGGTCTTGT+AGG 0.400449 4.3:-43577951 None:intergenic
GTATCTCTATGGATCAATTT+GGG 0.405509 4.3:+43577965 MS.gene09167:CDS
TCTGTCTCTCCATCTGGATA+TGG 0.412154 4.3:+43578119 MS.gene09167:CDS
AATTTGGGATGCATCTTCTT+GGG 0.412238 4.3:+43577980 MS.gene09167:CDS
CAATTTCATCATGGTTTCCT+GGG 0.412270 4.3:-43576630 None:intergenic
TCTTATAAATCTGGATACTT+TGG 0.415834 4.3:+43576280 MS.gene09167:CDS
AAGCCTTGACTAAAGGATAT+AGG 0.421615 4.3:-43576012 None:intergenic
AATTAATTACATTATCTCAC+TGG 0.423947 4.3:-43576815 None:intergenic
TTAAAGGATTGAGATGATAA+TGG 0.428982 4.3:-43575877 None:intergenic
GGGACCTCAACATCAAAGAT+TGG 0.445332 4.3:+43576047 MS.gene09167:CDS
TCACCATCTGTCTCTCCATC+TGG 0.448304 4.3:+43578113 MS.gene09167:CDS
GTTTCTAAAGCCTTGACTAA+AGG 0.455469 4.3:-43576019 None:intergenic
AATGTATATATGAGAGGAAG+TGG 0.455749 4.3:+43576703 MS.gene09167:CDS
TATATGAGAGGAAGTGGAGA+TGG 0.457663 4.3:+43576709 MS.gene09167:CDS
TGGTCCAATCTTTGATGTTG+AGG 0.457917 4.3:-43576051 None:intergenic
AGTACAACAAAAGAGAAGAT+AGG 0.470221 4.3:-43575916 None:intergenic
ATGGGTCCAAAGCAAGTACT+TGG 0.471019 4.3:+43578175 MS.gene09167:CDS
CTTCATCCTGGCTATACTGC+TGG 0.471632 4.3:+43576316 MS.gene09167:CDS
TCTTCTTGGGCAACAGAAGA+TGG 0.480591 4.3:+43577993 MS.gene09167:CDS
ATGGAGAGACAGATGGTGAT+TGG 0.482164 4.3:-43578109 None:intergenic
AATACCAACCCTTTGTTGGA+AGG 0.490727 4.3:+43578036 MS.gene09167:CDS
CCATGTATTGTTGAGGGCTA+AGG 0.494903 4.3:-43578145 None:intergenic
GCATGAGGCAGGACTTTGAA+TGG 0.495766 4.3:-43578087 None:intergenic
ACTCAATGTCAATTTCATCA+TGG 0.496342 4.3:-43576639 None:intergenic
TGCAACACATATGGCTTACC+AGG 0.497957 4.3:-43576676 None:intergenic
ACAATACATGGCCATGCAAT+GGG 0.506097 4.3:+43578157 MS.gene09167:CDS
ATATGAGAGGAAGTGGAGAT+GGG 0.508599 4.3:+43576710 MS.gene09167:CDS
AACAATACATGGCCATGCAA+TGG 0.508700 4.3:+43578156 MS.gene09167:CDS
AAGAGAAGATAGGAACCATA+TGG 0.510217 4.3:-43575906 None:intergenic
GATGGTGATTGGCATGAGGC+AGG 0.523915 4.3:-43578098 None:intergenic
CCTTAGCCCTCAACAATACA+TGG 0.524925 4.3:+43578145 MS.gene09167:CDS
TACACAAACTTCAAATTACA+AGG 0.530357 4.3:+43578059 MS.gene09167:CDS
GAGTTTCTTGGAACAACACC+TGG 0.531284 4.3:+43576658 MS.gene09167:CDS
TTTGTGTACCTTCCAACAAA+GGG 0.532308 4.3:-43578044 None:intergenic
ATTAATTACATTATCTCACT+GGG 0.537043 4.3:-43576814 None:intergenic
AGAGATACATTGGTCTTGTA+GGG 0.539229 4.3:-43577950 None:intergenic
AACACTCAGGGATAAGATTG+TGG 0.539679 4.3:-43578229 None:intergenic
TGCCCATAAGAAGGTATCCT+AGG 0.542748 4.3:+43577910 MS.gene09167:CDS
TGCATGGCCATGTATTGTTG+AGG 0.546522 4.3:-43578152 None:intergenic
GCTCAGGGTCCACCTTCACC+TGG 0.548929 4.3:+43575964 MS.gene09167:CDS
TTTCATCATGGTTTCCTGGG+TGG 0.551916 4.3:-43576627 None:intergenic
ATATGGCTTGACTCTAACTC+AGG 0.552550 4.3:+43576087 MS.gene09167:CDS
GTTTGTGTACCTTCCAACAA+AGG 0.558155 4.3:-43578045 None:intergenic
ATTGATCCATAGAGATACAT+TGG 0.558786 4.3:-43577960 None:intergenic
TAGATGATGTGCCCATAAGA+AGG 0.560691 4.3:+43577901 MS.gene09167:CDS
GCATGGCCATGTATTGTTGA+GGG 0.561198 4.3:-43578151 None:intergenic
ATAACTCCAGCAGTATAGCC+AGG 0.564593 4.3:-43576322 None:intergenic
CTTGCTTTGGACCCATTGCA+TGG 0.567532 4.3:-43578168 None:intergenic
ATACATTGGTCTTGTAGGGT+AGG 0.572270 4.3:-43577946 None:intergenic
ATATTTGGTTCTAATGCTCA+GGG 0.574778 4.3:+43575949 MS.gene09167:CDS
AGTCCTATATCCTTTAGTCA+AGG 0.575832 4.3:+43576009 MS.gene09167:CDS
TGTACCTTCCAACAAAGGGT+TGG 0.580266 4.3:-43578040 None:intergenic
CAAACAAATGTATATATGAG+AGG 0.581790 4.3:+43576697 MS.gene09167:CDS
TTGGAACTAGGGTAGTAGCC+AGG 0.581986 4.3:-43575982 None:intergenic
CATTGGTCTTGTAGGGTAGG+TGG 0.587779 4.3:-43577943 None:intergenic
TAGTTGTGAAAATCTTGAGT+TGG 0.590085 4.3:-43576775 None:intergenic
CTAGGGTAGTAGCCAGGTGA+AGG 0.595243 4.3:-43575976 None:intergenic
GAACAACACCCTTAACACTC+AGG 0.596917 4.3:-43578242 None:intergenic
CAAGGCTTTAGAAACCTTTG+GGG 0.599359 4.3:+43576027 MS.gene09167:CDS
GGGTAGTAGCCAGGTGAAGG+TGG 0.600430 4.3:-43575973 None:intergenic
TTTGATGTTGAGGTCCCCAA+AGG 0.607697 4.3:-43576041 None:intergenic
GCTGCAATTAAGCTTCATCC+TGG 0.612073 4.3:+43576304 MS.gene09167:CDS
AACAACACCCTTAACACTCA+GGG 0.612917 4.3:-43578241 None:intergenic
CTAAGGCTACCATATCCAGA+TGG 0.643351 4.3:-43578128 None:intergenic
GACAGATGGTGATTGGCATG+AGG 0.650748 4.3:-43578102 None:intergenic
TATCCAGATGGAGAGACAGA+TGG 0.652307 4.3:-43578116 None:intergenic
TCAAATAACCAAGACCACCC+AGG 0.655652 4.3:+43576613 MS.gene09167:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGTAAAATACAAT+TGG + chr4.3:43577617-43577636 MS.gene09167:intron 10.0%
!! GATAAATTAAAATTTAGATG+AGG + chr4.3:43577301-43577320 MS.gene09167:intron 15.0%
!! TTTATATTTGTGAAACAAAA+TGG - chr4.3:43576941-43576960 None:intergenic 15.0%
!!! GGATAAAATTAATTTTTTTG+CGG - chr4.3:43576467-43576486 None:intergenic 15.0%
!!! TTTCTAAAAGTTTGTTTATT+AGG - chr4.3:43577001-43577020 None:intergenic 15.0%
!! AAATTAAAATTTAGATGAGG+TGG + chr4.3:43577304-43577323 MS.gene09167:intron 20.0%
!! AATTAAAATTTAGATGAGGT+GGG + chr4.3:43577305-43577324 MS.gene09167:intron 20.0%
!! AATTAATTACATTATCTCAC+TGG - chr4.3:43576818-43576837 None:intergenic 20.0%
!! ATTAATTACATTATCTCACT+GGG - chr4.3:43576817-43576836 None:intergenic 20.0%
!! GTAATTATGTGTCATATTTA+TGG + chr4.3:43576886-43576905 MS.gene09167:intron 20.0%
!! TCATATATCACATTATTAGA+TGG + chr4.3:43577755-43577774 MS.gene09167:intron 20.0%
!!! AAAATATCGGTATAATCTTT+TGG - chr4.3:43577721-43577740 None:intergenic 20.0%
!!! ATTGTTTTAATGATTAGTAC+AGG - chr4.3:43577797-43577816 None:intergenic 20.0%
!!! ATTTTATACGAATTAAGAGA+CGG - chr4.3:43576488-43576507 None:intergenic 20.0%
!!! TAGCATTAAAATTTTGTTGA+TGG - chr4.3:43577389-43577408 None:intergenic 20.0%
!!! TGATGATTAGTCAAAAATAT+CGG - chr4.3:43577734-43577753 None:intergenic 20.0%
! AACCATATGGAAGAAATTAA+AGG - chr4.3:43575896-43575915 None:intergenic 25.0%
! AGGAAATAAAAACGATAAGA+TGG + chr4.3:43577260-43577279 MS.gene09167:intron 25.0%
! CAAACAAATGTATATATGAG+AGG + chr4.3:43576697-43576716 MS.gene09167:CDS 25.0%
! TACACAAACTTCAAATTACA+AGG + chr4.3:43578059-43578078 MS.gene09167:CDS 25.0%
! TATTCTTATGAGATGTGAAT+CGG + chr4.3:43577424-43577443 MS.gene09167:intron 25.0%
! TCTTATAAATCTGGATACTT+TGG + chr4.3:43576280-43576299 MS.gene09167:CDS 25.0%
! TTAAAGGATTGAGATGATAA+TGG - chr4.3:43575880-43575899 None:intergenic 25.0%
!! AAAGGATATAGGACTAATTT+TGG - chr4.3:43576004-43576023 None:intergenic 25.0%
!! ATCCTTTAATTTCTTCCATA+TGG + chr4.3:43575891-43575910 MS.gene09167:CDS 25.0%
!! CTAACTAGTTTGTCTTATAA+TGG + chr4.3:43577853-43577872 MS.gene09167:intron 25.0%
!!! ACTATTGGATCTCTTTTTTA+GGG + chr4.3:43577680-43577699 MS.gene09167:intron 25.0%
!!! ACTTTAAACTTTTGAAACAC+AGG + chr4.3:43576235-43576254 MS.gene09167:intron 25.0%
AAATGACTTATATCGTGAGA+CGG - chr4.3:43576392-43576411 None:intergenic 30.0%
AATGTATATATGAGAGGAAG+TGG + chr4.3:43576703-43576722 MS.gene09167:CDS 30.0%
ACATTTGTTTGCAACACATA+TGG - chr4.3:43576688-43576707 None:intergenic 30.0%
ACCAAAGCTCTTTAACAATA+TGG + chr4.3:43576070-43576089 MS.gene09167:CDS 30.0%
ACTCAATGTCAATTTCATCA+TGG - chr4.3:43576642-43576661 None:intergenic 30.0%
AGTACAACAAAAGAGAAGAT+AGG - chr4.3:43575919-43575938 None:intergenic 30.0%
ATTGATAAAGACACGTGAAT+AGG - chr4.3:43577131-43577150 None:intergenic 30.0%
ATTGATCCATAGAGATACAT+TGG - chr4.3:43577963-43577982 None:intergenic 30.0%
GAAATTGACATTGAGTTTCT+TGG + chr4.3:43576646-43576665 MS.gene09167:CDS 30.0%
GAGATACAATTGGAAAGAAA+AGG + chr4.3:43577240-43577259 MS.gene09167:intron 30.0%
GTACTTTCACTCACAATATT+TGG + chr4.3:43575934-43575953 MS.gene09167:CDS 30.0%
GTATCTCTATGGATCAATTT+GGG + chr4.3:43577965-43577984 MS.gene09167:CDS 30.0%
TAGTTGTGAAAATCTTGAGT+TGG - chr4.3:43576778-43576797 None:intergenic 30.0%
TATAAATACCAACCCTTTGT+TGG + chr4.3:43578032-43578051 MS.gene09167:CDS 30.0%
TCACTTCACTCTTATAAATC+TGG + chr4.3:43576271-43576290 MS.gene09167:CDS 30.0%
TGTATCTCTATGGATCAATT+TGG + chr4.3:43577964-43577983 MS.gene09167:CDS 30.0%
TTCACAACTATGCTATTCTA+TGG + chr4.3:43576788-43576807 MS.gene09167:CDS 30.0%
!! AATATTTGGTTCTAATGCTC+AGG + chr4.3:43575948-43575967 MS.gene09167:CDS 30.0%
!! ATATTTGGTTCTAATGCTCA+GGG + chr4.3:43575949-43575968 MS.gene09167:CDS 30.0%
!! TCTGCTTTGAGCTTTATTAT+CGG + chr4.3:43576161-43576180 MS.gene09167:intron 30.0%
!!! ATAGGACTAATTTTGGAACT+AGG - chr4.3:43575997-43576016 None:intergenic 30.0%
!!! CACTATTGGATCTCTTTTTT+AGG + chr4.3:43577679-43577698 MS.gene09167:intron 30.0%
!!! CTATTGGATCTCTTTTTTAG+GGG + chr4.3:43577681-43577700 MS.gene09167:intron 30.0%
!!! TAGGACTAATTTTGGAACTA+GGG - chr4.3:43575996-43576015 None:intergenic 30.0%
AAGAGAAGATAGGAACCATA+TGG - chr4.3:43575909-43575928 None:intergenic 35.0%
AAGCCTTGACTAAAGGATAT+AGG - chr4.3:43576015-43576034 None:intergenic 35.0%
ACAAGACCAATGTATCTCTA+TGG + chr4.3:43577954-43577973 MS.gene09167:CDS 35.0%
AGAGAACTGAGAGATACAAT+TGG + chr4.3:43577230-43577249 MS.gene09167:intron 35.0%
AGTCCTATATCCTTTAGTCA+AGG + chr4.3:43576009-43576028 MS.gene09167:CDS 35.0%
CAATTTCATCATGGTTTCCT+GGG - chr4.3:43576633-43576652 None:intergenic 35.0%
CCAATAGTGAATGCAATAGT+AGG - chr4.3:43577668-43577687 None:intergenic 35.0%
CCTACTATTGCATTCACTAT+TGG + chr4.3:43577665-43577684 MS.gene09167:intron 35.0%
GAGAGATGCAATTTCATCTT+TGG + chr4.3:43576746-43576765 MS.gene09167:CDS 35.0%
GCCATATTGTTAAAGAGCTT+TGG - chr4.3:43576074-43576093 None:intergenic 35.0%
TCAATTTCATCATGGTTTCC+TGG - chr4.3:43576634-43576653 None:intergenic 35.0%
TGAATCGGCTACTTATCAAT+CGG + chr4.3:43577439-43577458 MS.gene09167:intron 35.0%
TGTAAACCAAGTACTTGCTT+TGG - chr4.3:43578184-43578203 None:intergenic 35.0%
TTCCTAGGATACCTTCTTAT+GGG - chr4.3:43577915-43577934 None:intergenic 35.0%
TTTCCTAGGATACCTTCTTA+TGG - chr4.3:43577916-43577935 None:intergenic 35.0%
TTTGTGTACCTTCCAACAAA+GGG - chr4.3:43578047-43578066 None:intergenic 35.0%
! AATTTGGGATGCATCTTCTT+GGG + chr4.3:43577980-43577999 MS.gene09167:CDS 35.0%
!! AGAGATACATTGGTCTTGTA+GGG - chr4.3:43577953-43577972 None:intergenic 35.0%
!! GTTTCTAAAGCCTTGACTAA+AGG - chr4.3:43576022-43576041 None:intergenic 35.0%
!! TAGAGATACATTGGTCTTGT+AGG - chr4.3:43577954-43577973 None:intergenic 35.0%
!! TCAAGGCTTTAGAAACCTTT+GGG + chr4.3:43576026-43576045 MS.gene09167:CDS 35.0%
!!! AACTTTTGAAACACAGGTAG+TGG + chr4.3:43576241-43576260 MS.gene09167:intron 35.0%
!!! AGTTTTTTTCTCTTCGCCAT+TGG - chr4.3:43577473-43577492 None:intergenic 35.0%
!!! TCTTTTTTAGGGGCGTATTA+GGG + chr4.3:43577691-43577710 MS.gene09167:intron 35.0%
AACAATACATGGCCATGCAA+TGG + chr4.3:43578156-43578175 MS.gene09167:CDS 40.0%
AACACTCAGGGATAAGATTG+TGG - chr4.3:43578232-43578251 None:intergenic 40.0%
AATACCAACCCTTTGTTGGA+AGG + chr4.3:43578036-43578055 MS.gene09167:CDS 40.0%
ACAATACATGGCCATGCAAT+GGG + chr4.3:43578157-43578176 MS.gene09167:CDS 40.0%
AGTGGAGATGGGAACATTAT+AGG + chr4.3:43576721-43576740 MS.gene09167:CDS 40.0%
ATATGAGAGGAAGTGGAGAT+GGG + chr4.3:43576710-43576729 MS.gene09167:CDS 40.0%
ATATGGCTTGACTCTAACTC+AGG + chr4.3:43576087-43576106 MS.gene09167:CDS 40.0%
GTTTGTGTACCTTCCAACAA+AGG - chr4.3:43578048-43578067 None:intergenic 40.0%
TAGATGATGTGCCCATAAGA+AGG + chr4.3:43577901-43577920 MS.gene09167:CDS 40.0%
TATATGAGAGGAAGTGGAGA+TGG + chr4.3:43576709-43576728 MS.gene09167:CDS 40.0%
TGGTCCAATCTTTGATGTTG+AGG - chr4.3:43576054-43576073 None:intergenic 40.0%
! CAATTTGGGATGCATCTTCT+TGG + chr4.3:43577979-43577998 MS.gene09167:CDS 40.0%
!! ATACATTGGTCTTGTAGGGT+AGG - chr4.3:43577949-43577968 None:intergenic 40.0%
!! CAAGGCTTTAGAAACCTTTG+GGG + chr4.3:43576027-43576046 MS.gene09167:CDS 40.0%
!! GTCAAGGCTTTAGAAACCTT+TGG + chr4.3:43576025-43576044 MS.gene09167:CDS 40.0%
!!! CTCTTTTTTAGGGGCGTATT+AGG + chr4.3:43577690-43577709 MS.gene09167:intron 40.0%
!!! TTTTTTCTCTTCGCCATTGG+AGG - chr4.3:43577470-43577489 None:intergenic 40.0%
ATAACTCCAGCAGTATAGCC+AGG - chr4.3:43576325-43576344 None:intergenic 45.0%
ATGGAGAGACAGATGGTGAT+TGG - chr4.3:43578112-43578131 None:intergenic 45.0%
ATGGGTCCAAAGCAAGTACT+TGG + chr4.3:43578175-43578194 MS.gene09167:CDS 45.0%
CCATGTATTGTTGAGGGCTA+AGG - chr4.3:43578148-43578167 None:intergenic 45.0%
CCTTAGCCCTCAACAATACA+TGG + chr4.3:43578145-43578164 MS.gene09167:CDS 45.0%
CTAAGGCTACCATATCCAGA+TGG - chr4.3:43578131-43578150 None:intergenic 45.0%
GAGTTTCTTGGAACAACACC+TGG + chr4.3:43576658-43576677 MS.gene09167:CDS 45.0%
GCATGGCCATGTATTGTTGA+GGG - chr4.3:43578154-43578173 None:intergenic 45.0%
GCTGCAATTAAGCTTCATCC+TGG + chr4.3:43576304-43576323 MS.gene09167:CDS 45.0%
GGGACCTCAACATCAAAGAT+TGG + chr4.3:43576047-43576066 MS.gene09167:CDS 45.0%
TATCCAGATGGAGAGACAGA+TGG - chr4.3:43578119-43578138 None:intergenic 45.0%
TCAAATAACCAAGACCACCC+AGG + chr4.3:43576613-43576632 MS.gene09167:CDS 45.0%
TCTGTCTCTCCATCTGGATA+TGG + chr4.3:43578119-43578138 MS.gene09167:CDS 45.0%
TCTTCTTGGGCAACAGAAGA+TGG + chr4.3:43577993-43578012 MS.gene09167:CDS 45.0%
TGCAACACATATGGCTTACC+AGG - chr4.3:43576679-43576698 None:intergenic 45.0%
TGCATGGCCATGTATTGTTG+AGG - chr4.3:43578155-43578174 None:intergenic 45.0%
TGTACCTTCCAACAAAGGGT+TGG - chr4.3:43578043-43578062 None:intergenic 45.0%
TTTCATCATGGTTTCCTGGG+TGG - chr4.3:43576630-43576649 None:intergenic 45.0%
TTTGATGTTGAGGTCCCCAA+AGG - chr4.3:43576044-43576063 None:intergenic 45.0%
! TCAATCGGTTCAACCTCCAA+TGG + chr4.3:43577454-43577473 MS.gene09167:intron 45.0%
!! TAGGTGGCATCACTTTTCCT+AGG - chr4.3:43577930-43577949 None:intergenic 45.0%
!! TGCCCATAAGAAGGTATCCT+AGG + chr4.3:43577910-43577929 MS.gene09167:CDS 45.0%
CTTCATCCTGGCTATACTGC+TGG + chr4.3:43576316-43576335 MS.gene09167:CDS 50.0%
GACAGATGGTGATTGGCATG+AGG - chr4.3:43578105-43578124 None:intergenic 50.0%
GCATGAGGCAGGACTTTGAA+TGG - chr4.3:43578090-43578109 None:intergenic 50.0%
GTGGGTCTCAGAGTTCGTTA+GGG + chr4.3:43577323-43577342 MS.gene09167:intron 50.0%
TCACCATCTGTCTCTCCATC+TGG + chr4.3:43578113-43578132 MS.gene09167:CDS 50.0%
TTGGAACTAGGGTAGTAGCC+AGG - chr4.3:43575985-43576004 None:intergenic 50.0%
! CTTGCTTTGGACCCATTGCA+TGG - chr4.3:43578171-43578190 None:intergenic 50.0%
!! CATTGGTCTTGTAGGGTAGG+TGG - chr4.3:43577946-43577965 None:intergenic 50.0%
CATGGTTTCCTGGGTGGTCT+TGG - chr4.3:43576624-43576643 None:intergenic 55.0%
CTAGGGTAGTAGCCAGGTGA+AGG - chr4.3:43575979-43575998 None:intergenic 55.0%
GATGGTGATTGGCATGAGGC+AGG - chr4.3:43578101-43578120 None:intergenic 55.0%
GGTGGGTCTCAGAGTTCGTT+AGG + chr4.3:43577322-43577341 MS.gene09167:intron 55.0%
GGGTAGTAGCCAGGTGAAGG+TGG - chr4.3:43575976-43575995 None:intergenic 60.0%
GCTCAGGGTCCACCTTCACC+TGG + chr4.3:43575964-43575983 MS.gene09167:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 43575874 43578253 43575874 ID=MS.gene09167
chr4.3 mRNA 43575874 43578253 43575874 ID=MS.gene09167.t1;Parent=MS.gene09167
chr4.3 exon 43575874 43576108 43575874 ID=MS.gene09167.t1.exon1;Parent=MS.gene09167.t1
chr4.3 CDS 43575874 43576108 43575874 ID=cds.MS.gene09167.t1;Parent=MS.gene09167.t1
chr4.3 exon 43576257 43576357 43576257 ID=MS.gene09167.t1.exon2;Parent=MS.gene09167.t1
chr4.3 CDS 43576257 43576357 43576257 ID=cds.MS.gene09167.t1;Parent=MS.gene09167.t1
chr4.3 exon 43576610 43576827 43576610 ID=MS.gene09167.t1.exon3;Parent=MS.gene09167.t1
chr4.3 CDS 43576610 43576827 43576610 ID=cds.MS.gene09167.t1;Parent=MS.gene09167.t1
chr4.3 exon 43577893 43578253 43577893 ID=MS.gene09167.t1.exon4;Parent=MS.gene09167.t1
chr4.3 CDS 43577893 43578253 43577893 ID=cds.MS.gene09167.t1;Parent=MS.gene09167.t1
Gene Sequence

>MS.gene09167

ATGCCATTATCATCTCAATCCTTTAATTTCTTCCATATGGTTCCTATCTTCTCTTTTGTTGTACTTTCACTCACAATATTTGGTTCTAATGCTCAGGGTCCACCTTCACCTGGCTACTACCCTAGTTCCAAAATTAGTCCTATATCCTTTAGTCAAGGCTTTAGAAACCTTTGGGGACCTCAACATCAAAGATTGGACCAAAGCTCTTTAACAATATGGCTTGACTCTAACTCAGGTATGTAAATTAATAAAGCTCAGAGCAGACAATATCTCAGACTGAGATATTGTCTGCTTTGAGCTTTATTATCGGACTCTCACTGAGTATGTAAACTTGTCTCACTAATATATAGTTTAACTTTAAACTTTAAACTTTTGAAACACAGGTAGTGGATTCAAGTCACTTCACTCTTATAAATCTGGATACTTTGGTGCTGCAATTAAGCTTCATCCTGGCTATACTGCTGGAGTTATTACTTCTCTCTATGTAAGTTTGACTAATGTTGAAAATTACTTCTCCGTCTCACGATATAAGTCATTTTAGTAAACAAAAACGTCGTCTTATTTTATATGTCATTTGAGCGAAAATTGTTCCGCAAAAAAATTAATTTTATCCGTCTCTTAATTCGTATAAAATTTAATAAAACGACTTATATCGTGAGAACGAGTTATTAAATCTATTTCTTGAAATGCAAATTTGTTTTTTTTTTTTAATATTATTTCTATATTGTAATTGCAGCTTTCAAATAACCAAGACCACCCAGGAAACCATGATGAAATTGACATTGAGTTTCTTGGAACAACACCTGGTAAGCCATATGTGTTGCAAACAAATGTATATATGAGAGGAAGTGGAGATGGGAACATTATAGGAAGAGAGATGCAATTTCATCTTTGGTTTGATCCAACTCAAGATTTTCACAACTATGCTATTCTATGGAAACCCAGTGAGATAATGTAATTAATTTTTTTCATTCATTCTCATGCTTATTATTGATCATTTTCATCAACATCAGTAATTATGTGTCATATTTATGGCTATGTCACAATAATTCTGTTGAAAAAGACCATTTTGTTTCACAAATATAAATATGATGTAAAAATCATATAGTCTGCATGATTTTTTGCCTAATAAACAAACTTTTAGAAATATCAATTCATTGAGTGAATACAAATAATATATCAATTCATGTCATGTTAGTTGAAATGAAAGACAATATTTTAATATAAGAATGAGTGAATTTGTGCATAGTTAAACCTATTCACGTGTCTTTATCAATCAATCTATTTGAGCTTTTGCAAGAGTTGTTTATGACAAATAAAAGTAGAAAGAGAGCGAAAGAAAAGAAAAATAAATAGAGAGAACTGAGAGATACAATTGGAAAGAAAAGGAAATAAAAACGATAAGATGGAACAAAAATATATTTTTAGATAAATTAAAATTTAGATGAGGTGGGTCTCAGAGTTCGTTAGGGTAGAGTTCAAAAAATATTTAAAAAGATAATTATATGTTATCCATCAACAAAATTTTAATGCTATAGAAATTGAACACATATTCTTATGAGATGTGAATCGGCTACTTATCAATCGGTTCAACCTCCAATGGCGAAGAGAAAAAAACTTAAAACATTAAAATTATACTTCTATTTAATGACACAATAAAAAAAAGCTTTACACACAATATGTTTAATCATATTTATCATTTAAATAATTGTACACTTAATCTAGAGAATTCAATAAAATAAAAATATATAGTAAAATACAATTGGACGTTTGTATAAAAGAAGATATTAACCTACTATTGCATTCACTATTGGATCTCTTTTTTAGGGGCGTATTAGGGACATCCAAAAGATTATACCGATATTTTTGACTAATCATCATTCATATATCACATTATTAGATGGTGACTATGATTTTTCACCTGTACTAATCATTAAAACAATTTAAAATCTTGCTTGTGAATCTAGTTTTATTGTTTGCTAACTAGTTTGTCTTATAATGGAAAAACAACAAATGCAGATTTTTAGTAGATGATGTGCCCATAAGAAGGTATCCTAGGAAAAGTGATGCCACCTACCCTACAAGACCAATGTATCTCTATGGATCAATTTGGGATGCATCTTCTTGGGCAACAGAAGATGGAAAATACAAAGCTGATTATAAATACCAACCCTTTGTTGGAAGGTACACAAACTTCAAATTACAAGGTTGTACCATTCAAAGTCCTGCCTCATGCCAATCACCATCTGTCTCTCCATCTGGATATGGTAGCCTTAGCCCTCAACAATACATGGCCATGCAATGGGTCCAAAGCAAGTACTTGGTTTACAATTATTGTCATGACTCTAAAAGAAACCACAATCTTATCCCTGAGTGTTAA
Protein sequence

>MS.gene09167.t1

MPLSSQSFNFFHMVPIFSFVVLSLTIFGSNAQGPPSPGYYPSSKISPISFSQGFRNLWGPQHQRLDQSSLTIWLDSNSGSGFKSLHSYKSGYFGAAIKLHPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYMRGSGDGNIIGREMQFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATYPTRPMYLYGSIWDASSWATEDGKYKADYKYQPFVGRYTNFKLQGCTIQSPASCQSPSVSPSGYGSLSPQQYMAMQWVQSKYLVYNYCHDSKRNHNLIPEC