Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53270.t1 | XP_003629835.1 | 90.4 | 209 | 8 | 2 | 1 | 198 | 18 | 225 | 9.80E-105 | 389.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53270.t1 | P32110 | 47.3 | 205 | 95 | 2 | 3 | 195 | 21 | 224 | 4.2e-48 | 192.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53270.t1 | G7L788 | 90.4 | 209 | 8 | 2 | 1 | 198 | 18 | 225 | 7.1e-105 | 389.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050381 | MS.gene53270 | 0.806934 | 6.46E-50 | -1.69E-46 |
MS.gene050883 | MS.gene53270 | 0.842852 | 2.01E-58 | -1.69E-46 |
MS.gene05141 | MS.gene53270 | 0.803934 | 2.75E-49 | -1.69E-46 |
MS.gene051946 | MS.gene53270 | 0.80885 | 2.53E-50 | -1.69E-46 |
MS.gene053420 | MS.gene53270 | 0.834416 | 3.03E-56 | -1.69E-46 |
MS.gene053549 | MS.gene53270 | 0.803509 | 3.37E-49 | -1.69E-46 |
MS.gene053826 | MS.gene53270 | 0.808558 | 2.92E-50 | -1.69E-46 |
MS.gene055154 | MS.gene53270 | 0.809457 | 1.87E-50 | -1.69E-46 |
MS.gene055549 | MS.gene53270 | 0.825168 | 5.43E-54 | -1.69E-46 |
MS.gene055550 | MS.gene53270 | 0.816409 | 5.61E-52 | -1.69E-46 |
MS.gene055551 | MS.gene53270 | 0.812575 | 3.96E-51 | -1.69E-46 |
MS.gene056310 | MS.gene53270 | 0.836729 | 7.89E-57 | -1.69E-46 |
MS.gene056311 | MS.gene53270 | 0.880155 | 6.93E-70 | -1.69E-46 |
MS.gene057014 | MS.gene53270 | 0.83223 | 1.06E-55 | -1.69E-46 |
MS.gene058111 | MS.gene53270 | 0.806267 | 8.94E-50 | -1.69E-46 |
MS.gene058171 | MS.gene53270 | 0.816748 | 4.71E-52 | -1.69E-46 |
MS.gene058173 | MS.gene53270 | 0.814882 | 1.23E-51 | -1.69E-46 |
MS.gene058175 | MS.gene53270 | 0.815553 | 8.72E-52 | -1.69E-46 |
MS.gene058493 | MS.gene53270 | 0.932145 | 1.32E-94 | -1.69E-46 |
MS.gene058494 | MS.gene53270 | 0.984628 | 4.07E-161 | -1.69E-46 |
MS.gene058496 | MS.gene53270 | 0.918857 | 9.28E-87 | -1.69E-46 |
MS.gene058628 | MS.gene53270 | 0.81089 | 9.20E-51 | -1.69E-46 |
MS.gene058630 | MS.gene53270 | 0.806262 | 8.96E-50 | -1.69E-46 |
MS.gene059223 | MS.gene53270 | 0.819448 | 1.16E-52 | -1.69E-46 |
MS.gene060595 | MS.gene53270 | 0.828678 | 7.87E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53270.t1 | MTR_3g011050 | 60.784 | 51 | 20 | 0 | 33 | 83 | 37 | 87 | 1.30e-13 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 53 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCCAATTTGGGAAGAAAT+TGG | 0.111299 | 4.3:-13535007 | MS.gene53270:CDS |
GTGACTCTGCAATTGATTTC+TGG | 0.157766 | 4.3:+13536135 | None:intergenic |
AAAGTTAGAAGAGGAGATAA+AGG | 0.273945 | 4.3:-13535098 | MS.gene53270:CDS |
GACCCAATTTCTTCCCAAAT+TGG | 0.274164 | 4.3:+13535004 | None:intergenic |
ATAAAGGGAAAGAAATTCTT+TGG | 0.305857 | 4.3:-13535082 | MS.gene53270:CDS |
AAAGTTCCGGTTCTTGTTCA+TGG | 0.322486 | 4.3:-13536158 | MS.gene53270:CDS |
AAAGATCTCAGGCTCGCTTT+TGG | 0.326368 | 4.3:-13536046 | MS.gene53270:CDS |
AATGTCCTTCCATCTCTTCA+TGG | 0.338522 | 4.3:-13534958 | MS.gene53270:CDS |
ACCGGAACTTTCTTATGAAT+CGG | 0.380626 | 4.3:+13536170 | None:intergenic |
TTCCAATTTGGGAAGAAATT+GGG | 0.398944 | 4.3:-13535006 | MS.gene53270:CDS |
CCCGATTCATAAGAAAGTTC+CGG | 0.414826 | 4.3:-13536171 | MS.gene53270:CDS |
TTATTGCCACCGTCGCATAA+AGG | 0.420018 | 4.3:-13534867 | MS.gene53270:CDS |
ACCTTGATCTTGCTCTTGGA+TGG | 0.423990 | 4.3:-13535042 | MS.gene53270:CDS |
TAAAGAATCATTTCATCCCT+TGG | 0.429286 | 4.3:+13534887 | None:intergenic |
CCGGAACTTTCTTATGAATC+GGG | 0.433313 | 4.3:+13536171 | None:intergenic |
TTCTGGCCATGAACAAGAAC+CGG | 0.434336 | 4.3:+13536152 | None:intergenic |
GGCTAAGTTATCTGATGAAA+AGG | 0.437582 | 4.3:-13536024 | MS.gene53270:intron |
GGGTACCTTGATCTTGCTCT+TGG | 0.453072 | 4.3:-13535046 | MS.gene53270:CDS |
TCTTTGGAGGGGACACTATC+GGG | 0.454808 | 4.3:-13535066 | MS.gene53270:CDS |
TGATTAAGAAAGGTGATGAA+TGG | 0.474122 | 4.3:-13535156 | MS.gene53270:intron |
AAAGGAGGCAAGAGAAATCA+TGG | 0.475218 | 4.3:-13535122 | MS.gene53270:CDS |
TTCTTTGGAGGGGACACTAT+CGG | 0.475345 | 4.3:-13535067 | MS.gene53270:CDS |
GATTAAGAAAGGTGATGAAT+GGG | 0.480475 | 4.3:-13535155 | MS.gene53270:intron |
AAGTTAGAAGAGGAGATAAA+GGG | 0.491500 | 4.3:-13535097 | MS.gene53270:CDS |
GAAAGGTGATGAATGGGAAA+AGG | 0.495659 | 4.3:-13535149 | MS.gene53270:CDS |
TGAGATCTTTGATAAGGATC+AGG | 0.498359 | 4.3:+13536059 | None:intergenic |
AGTTGGTCGTAGAGTTGAAT+GGG | 0.508405 | 4.3:-13536273 | MS.gene53270:CDS |
CAGTTGGTCGTAGAGTTGAA+TGG | 0.517051 | 4.3:-13536274 | MS.gene53270:CDS |
TGATCCTTATCAAAGATCTC+AGG | 0.520135 | 4.3:-13536057 | MS.gene53270:CDS |
CGAGCCTGAGATCTTTGATA+AGG | 0.520914 | 4.3:+13536053 | None:intergenic |
AAACACTCCTTGATGATGAT+AGG | 0.524604 | 4.3:+13534914 | None:intergenic |
AATCATGGAAAAGTTAGAAG+AGG | 0.531445 | 4.3:-13535107 | MS.gene53270:CDS |
AGGGAAAGAAATTCTTTGGA+GGG | 0.536580 | 4.3:-13535078 | MS.gene53270:CDS |
ATTGATCTTCCATGAAGAGA+TGG | 0.543546 | 4.3:+13534949 | None:intergenic |
TGAATGGGAAAAGGCTCTAA+AGG | 0.545680 | 4.3:-13535140 | MS.gene53270:CDS |
TCCATCCAAGAGCAAGATCA+AGG | 0.557485 | 4.3:+13535041 | None:intergenic |
TAAGGATCAGGAGGCAGCAA+TGG | 0.562517 | 4.3:+13536071 | None:intergenic |
CAAGGAGTGTTTGCCACCAA+GGG | 0.564625 | 4.3:-13534903 | MS.gene53270:CDS |
TGAATGGGCTCTAAAACTCA+AGG | 0.568264 | 4.3:-13536258 | MS.gene53270:CDS |
TCAAGGAGTGTTTGCCACCA+AGG | 0.571195 | 4.3:-13534904 | MS.gene53270:CDS |
ACTCCTTGATGATGATAGGA+TGG | 0.572678 | 4.3:+13534918 | None:intergenic |
TTGAATACATTGATGAAACA+TGG | 0.575829 | 4.3:-13536103 | MS.gene53270:CDS |
AAGGGAAAGAAATTCTTTGG+AGG | 0.576725 | 4.3:-13535079 | MS.gene53270:CDS |
GAGCCATCCTATCATCATCA+AGG | 0.581782 | 4.3:-13534921 | MS.gene53270:CDS |
AAGAATACTCCTTTATGCGA+CGG | 0.595491 | 4.3:+13534858 | None:intergenic |
GGGAAAGAAATTCTTTGGAG+GGG | 0.609810 | 4.3:-13535077 | MS.gene53270:CDS |
ATCTTCCATGAAGAGATGGA+AGG | 0.621011 | 4.3:+13534953 | None:intergenic |
AGAATCATTTCATCCCTTGG+TGG | 0.643379 | 4.3:+13534890 | None:intergenic |
GAATGGGCTCTAAAACTCAA+GGG | 0.646090 | 4.3:-13536257 | MS.gene53270:CDS |
GATCTTTGATAAGGATCAGG+AGG | 0.658191 | 4.3:+13536062 | None:intergenic |
ATGGGAAAAGGCTCTAAAGG+AGG | 0.677413 | 4.3:-13535137 | MS.gene53270:CDS |
AATACTCCTTTATGCGACGG+TGG | 0.688837 | 4.3:+13534861 | None:intergenic |
GAGTATTCTTCAACTCATCG+TGG | 0.696267 | 4.3:-13534845 | MS.gene53270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCAATATAAAACTATTTTAA+AGG | + | chr4.3:13535697-13535716 | None:intergenic | 10.0% |
!! | TAATTTACACATACAAAAAT+AGG | + | chr4.3:13535906-13535925 | None:intergenic | 15.0% |
!!! | AATAATTGTTTTATGAACTT+AGG | - | chr4.3:13535304-13535323 | MS.gene53270:intron | 15.0% |
!! | TATCTCTTGAATTTATTAGA+TGG | + | chr4.3:13535488-13535507 | None:intergenic | 20.0% |
!! | TATGTTGTTCAAATTTAACT+AGG | - | chr4.3:13535134-13535153 | MS.gene53270:CDS | 20.0% |
!!! | AAAATTATGTTTCCTTTTTG+AGG | - | chr4.3:13535203-13535222 | MS.gene53270:intron | 20.0% |
! | AAAATATTCTTGCCTCAAAA+AGG | + | chr4.3:13535218-13535237 | None:intergenic | 25.0% |
! | AAATACTACGTTTCTTTCAA+AGG | - | chr4.3:13535174-13535193 | MS.gene53270:intron | 25.0% |
! | ATAAAGGGAAAGAAATTCTT+TGG | - | chr4.3:13536030-13536049 | MS.gene53270:CDS | 25.0% |
! | ATTACTTGAGTACAATTGTT+TGG | - | chr4.3:13535359-13535378 | MS.gene53270:intron | 25.0% |
! | TTGAATACATTGATGAAACA+TGG | - | chr4.3:13535009-13535028 | MS.gene53270:CDS | 25.0% |
!!! | TTGAGGCAAGAATATTTTTT+TGG | - | chr4.3:13535220-13535239 | MS.gene53270:intron | 25.0% |
!!! | TTTTTTTGGTGTTAATCATC+CGG | - | chr4.3:13535234-13535253 | MS.gene53270:intron | 25.0% |
AAAGTTAGAAGAGGAGATAA+AGG | - | chr4.3:13536014-13536033 | MS.gene53270:intron | 30.0% | |
AAGTTAGAAGAGGAGATAAA+GGG | - | chr4.3:13536015-13536034 | MS.gene53270:intron | 30.0% | |
AATCATGGAAAAGTTAGAAG+AGG | - | chr4.3:13536005-13536024 | MS.gene53270:intron | 30.0% | |
ACCGTTTCTATCAACATATT+AGG | + | chr4.3:13535756-13535775 | None:intergenic | 30.0% | |
ATTTAACTAGGCTTATTCTG+AGG | - | chr4.3:13535146-13535165 | MS.gene53270:CDS | 30.0% | |
CATGATCAATATGTGTTTAG+TGG | - | chr4.3:13535331-13535350 | MS.gene53270:intron | 30.0% | |
GATGTTAATTATTCCATTCC+AGG | - | chr4.3:13535577-13535596 | MS.gene53270:intron | 30.0% | |
GATTAAGAAAGGTGATGAAT+GGG | - | chr4.3:13535957-13535976 | MS.gene53270:intron | 30.0% | |
TAAAGAATCATTTCATCCCT+TGG | + | chr4.3:13536228-13536247 | None:intergenic | 30.0% | |
TGATTAAGAAAGGTGATGAA+TGG | - | chr4.3:13535956-13535975 | MS.gene53270:intron | 30.0% | |
TGTTAATCATCCGGTTAATA+GGG | - | chr4.3:13535243-13535262 | MS.gene53270:intron | 30.0% | |
TTCCAATTTGGGAAGAAATT+GGG | - | chr4.3:13536106-13536125 | MS.gene53270:CDS | 30.0% | |
! | GCCTAATATGTTGATAGAAA+CGG | - | chr4.3:13535752-13535771 | MS.gene53270:intron | 30.0% |
! | TAAATTATTATAGCTTGCGC+TGG | - | chr4.3:13535919-13535938 | MS.gene53270:intron | 30.0% |
!! | AGATGGAAGGACATTTTAAT+GGG | + | chr4.3:13536149-13536168 | None:intergenic | 30.0% |
!! | CACTTGTTTTCTTCCAATTT+GGG | - | chr4.3:13536095-13536114 | MS.gene53270:CDS | 30.0% |
!! | TCACTTGTTTTCTTCCAATT+TGG | - | chr4.3:13536094-13536113 | MS.gene53270:CDS | 30.0% |
!! | TGGATTGCATTGATTAAGAA+AGG | - | chr4.3:13535946-13535965 | MS.gene53270:intron | 30.0% |
AAGAATACTCCTTTATGCGA+CGG | + | chr4.3:13536257-13536276 | None:intergenic | 35.0% | |
AAGGGAAAGAAATTCTTTGG+AGG | - | chr4.3:13536033-13536052 | MS.gene53270:CDS | 35.0% | |
ACAATACTTGAATGTATGCC+TGG | + | chr4.3:13535598-13535617 | None:intergenic | 35.0% | |
ACCGGAACTTTCTTATGAAT+CGG | + | chr4.3:13534945-13534964 | None:intergenic | 35.0% | |
AGGGAAAGAAATTCTTTGGA+GGG | - | chr4.3:13536034-13536053 | MS.gene53270:CDS | 35.0% | |
ATTGATCTTCCATGAAGAGA+TGG | + | chr4.3:13536166-13536185 | None:intergenic | 35.0% | |
CTTCCAATTTGGGAAGAAAT+TGG | - | chr4.3:13536105-13536124 | MS.gene53270:CDS | 35.0% | |
GGCTAAGTTATCTGATGAAA+AGG | - | chr4.3:13535088-13535107 | MS.gene53270:CDS | 35.0% | |
GTGTTAATCATCCGGTTAAT+AGG | - | chr4.3:13535242-13535261 | MS.gene53270:intron | 35.0% | |
GTTAATCATCCGGTTAATAG+GGG | - | chr4.3:13535244-13535263 | MS.gene53270:intron | 35.0% | |
TGAGATCTTTGATAAGGATC+AGG | + | chr4.3:13535056-13535075 | None:intergenic | 35.0% | |
TGATCCTTATCAAAGATCTC+AGG | - | chr4.3:13535055-13535074 | MS.gene53270:CDS | 35.0% | |
! | GAGATGGAAGGACATTTTAA+TGG | + | chr4.3:13536150-13536169 | None:intergenic | 35.0% |
!! | AAACACTCCTTGATGATGAT+AGG | + | chr4.3:13536201-13536220 | None:intergenic | 35.0% |
AAAGGAGGCAAGAGAAATCA+TGG | - | chr4.3:13535990-13536009 | MS.gene53270:intron | 40.0% | |
AAAGTTCCGGTTCTTGTTCA+TGG | - | chr4.3:13534954-13534973 | MS.gene53270:CDS | 40.0% | |
AATGTCCTTCCATCTCTTCA+TGG | - | chr4.3:13536154-13536173 | MS.gene53270:CDS | 40.0% | |
ACTTGAATGTATGCCTGGAA+TGG | + | chr4.3:13535593-13535612 | None:intergenic | 40.0% | |
AGAATCATTTCATCCCTTGG+TGG | + | chr4.3:13536225-13536244 | None:intergenic | 40.0% | |
ATCTTCCATGAAGAGATGGA+AGG | + | chr4.3:13536162-13536181 | None:intergenic | 40.0% | |
CCCGATTCATAAGAAAGTTC+CGG | - | chr4.3:13534941-13534960 | MS.gene53270:CDS | 40.0% | |
CCGGAACTTTCTTATGAATC+GGG | + | chr4.3:13534944-13534963 | None:intergenic | 40.0% | |
GAAAGGTGATGAATGGGAAA+AGG | - | chr4.3:13535963-13535982 | MS.gene53270:intron | 40.0% | |
GACCCAATTTCTTCCCAAAT+TGG | + | chr4.3:13536111-13536130 | None:intergenic | 40.0% | |
GAGTATTCTTCAACTCATCG+TGG | - | chr4.3:13536267-13536286 | MS.gene53270:CDS | 40.0% | |
GATCTTTGATAAGGATCAGG+AGG | + | chr4.3:13535053-13535072 | None:intergenic | 40.0% | |
! | GGGAAAGAAATTCTTTGGAG+GGG | - | chr4.3:13536035-13536054 | MS.gene53270:CDS | 40.0% |
! | GTGACTCTGCAATTGATTTC+TGG | + | chr4.3:13534980-13534999 | None:intergenic | 40.0% |
! | TGAATGGGAAAAGGCTCTAA+AGG | - | chr4.3:13535972-13535991 | MS.gene53270:intron | 40.0% |
!! | ACTCCTTGATGATGATAGGA+TGG | + | chr4.3:13536197-13536216 | None:intergenic | 40.0% |
!! | GAATGGGCTCTAAAACTCAA+GGG | - | chr4.3:13534855-13534874 | MS.gene53270:CDS | 40.0% |
!! | TGAATGGGCTCTAAAACTCA+AGG | - | chr4.3:13534854-13534873 | MS.gene53270:CDS | 40.0% |
AATACTCCTTTATGCGACGG+TGG | + | chr4.3:13536254-13536273 | None:intergenic | 45.0% | |
ACCTTGATCTTGCTCTTGGA+TGG | - | chr4.3:13536070-13536089 | MS.gene53270:CDS | 45.0% | |
ACTCTCCTTCCCCTATTAAC+CGG | + | chr4.3:13535256-13535275 | None:intergenic | 45.0% | |
ATCATCCGGTTAATAGGGGA+AGG | - | chr4.3:13535248-13535267 | MS.gene53270:intron | 45.0% | |
CGAGCCTGAGATCTTTGATA+AGG | + | chr4.3:13535062-13535081 | None:intergenic | 45.0% | |
GAGCCATCCTATCATCATCA+AGG | - | chr4.3:13536191-13536210 | MS.gene53270:CDS | 45.0% | |
TCCATCCAAGAGCAAGATCA+AGG | + | chr4.3:13536074-13536093 | None:intergenic | 45.0% | |
TTATTGCCACCGTCGCATAA+AGG | - | chr4.3:13536245-13536264 | MS.gene53270:CDS | 45.0% | |
TTCTGGCCATGAACAAGAAC+CGG | + | chr4.3:13534963-13534982 | None:intergenic | 45.0% | |
! | AAAGATCTCAGGCTCGCTTT+TGG | - | chr4.3:13535066-13535085 | MS.gene53270:CDS | 45.0% |
! | TTCTTTGGAGGGGACACTAT+CGG | - | chr4.3:13536045-13536064 | MS.gene53270:CDS | 45.0% |
!! | AAGATCTCAGGCTCGCTTTT+GGG | - | chr4.3:13535067-13535086 | MS.gene53270:CDS | 45.0% |
!! | ATGGGAAAAGGCTCTAAAGG+AGG | - | chr4.3:13535975-13535994 | MS.gene53270:intron | 45.0% |
!! | TTATAGCTTGCGCTGGTTCA+TGG | - | chr4.3:13535926-13535945 | MS.gene53270:intron | 45.0% |
GGAAGGAGAGTTCTCTCGAA+AGG | - | chr4.3:13535265-13535284 | MS.gene53270:intron | 50.0% | |
GGGTACCTTGATCTTGCTCT+TGG | - | chr4.3:13536066-13536085 | MS.gene53270:CDS | 50.0% | |
TAAGGATCAGGAGGCAGCAA+TGG | + | chr4.3:13535044-13535063 | None:intergenic | 50.0% | |
! | TCTTTGGAGGGGACACTATC+GGG | - | chr4.3:13536046-13536065 | MS.gene53270:CDS | 50.0% |
!! | CAAGGAGTGTTTGCCACCAA+GGG | - | chr4.3:13536209-13536228 | MS.gene53270:CDS | 50.0% |
!! | TCAAGGAGTGTTTGCCACCA+AGG | - | chr4.3:13536208-13536227 | MS.gene53270:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 13534841 | 13536293 | 13534841 | ID=MS.gene53270 |
chr4.3 | mRNA | 13534841 | 13536293 | 13534841 | ID=MS.gene53270.t1;Parent=MS.gene53270 |
chr4.3 | exon | 13536025 | 13536293 | 13536025 | ID=MS.gene53270.t1.exon1;Parent=MS.gene53270.t1 |
chr4.3 | CDS | 13536025 | 13536293 | 13536025 | ID=cds.MS.gene53270.t1;Parent=MS.gene53270.t1 |
chr4.3 | exon | 13534841 | 13535170 | 13534841 | ID=MS.gene53270.t1.exon2;Parent=MS.gene53270.t1 |
chr4.3 | CDS | 13534841 | 13535170 | 13534841 | ID=cds.MS.gene53270.t1;Parent=MS.gene53270.t1 |
Gene Sequence |
Protein sequence |