Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53483.t1 | XP_003613227.1 | 90.7 | 193 | 18 | 0 | 20 | 212 | 1 | 193 | 1.10E-93 | 352.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53483.t1 | Q6NKP9 | 67.1 | 167 | 53 | 1 | 31 | 197 | 2 | 166 | 1.4e-57 | 224.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53483.t1 | G7K1D2 | 90.7 | 193 | 18 | 0 | 20 | 212 | 1 | 193 | 8.0e-94 | 352.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene53483 | 0.852565 | 4.25E-61 | -1.69E-46 |
| MS.gene049378 | MS.gene53483 | 0.861344 | 1.10E-63 | -1.69E-46 |
| MS.gene04991 | MS.gene53483 | -0.820884 | 5.42E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene53483 | 0.802554 | 5.31E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene53483 | 0.81376 | 2.17E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene53483 | 0.815281 | 1.00E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene53483 | 0.814441 | 1.54E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene53483 | -0.805164 | 1.52E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene53483 | 0.819551 | 1.09E-52 | -1.69E-46 |
| MS.gene051122 | MS.gene53483 | 0.812837 | 3.47E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene53483 | 0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene53483 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene53483 | 0.837858 | 4.06E-57 | -1.69E-46 |
| MS.gene052389 | MS.gene53483 | 0.840645 | 7.67E-58 | -1.69E-46 |
| MS.gene053216 | MS.gene53483 | 0.804811 | 1.81E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene53483 | 0.843094 | 1.73E-58 | -1.69E-46 |
| MS.gene055701 | MS.gene53483 | 0.839916 | 1.19E-57 | -1.69E-46 |
| MS.gene056849 | MS.gene53483 | 0.853409 | 2.44E-61 | -1.69E-46 |
| MS.gene056979 | MS.gene53483 | 0.812358 | 4.41E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene53483 | 0.820396 | 7.01E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene53483 | 0.810391 | 1.18E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene53483 | 0.813866 | 2.06E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene53483 | 0.835358 | 1.76E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene53483 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene060852 | MS.gene53483 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene53483 | 0.839424 | 1.60E-57 | -1.69E-46 |
| MS.gene060940 | MS.gene53483 | 0.801898 | 7.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAAATCAGTTTATATTA+TGG | 0.188868 | 5.3:-23245174 | MS.gene53483:CDS |
| GCGAGGACTTGGTTACTTTA+TGG | 0.241212 | 5.3:+23245129 | None:intergenic |
| GGTTACTTTATGGTCTAAAA+AGG | 0.243770 | 5.3:+23245139 | None:intergenic |
| TTTCCAGTCAATGCGGTTAA+TGG | 0.255071 | 5.3:-23244670 | MS.gene53483:intron |
| GGATCCATCCAACAGGATAA+AGG | 0.336304 | 5.3:+23243742 | None:intergenic |
| TTAGATGCCGATTCCTGCTT+TGG | 0.347374 | 5.3:+23243941 | None:intergenic |
| GAAAACTTCCTCCTCATTTG+TGG | 0.403748 | 5.3:+23243785 | None:intergenic |
| CTGCTATAGGAACAGATATC+AGG | 0.407155 | 5.3:-23241352 | MS.gene53483:CDS |
| AGATTCGTTATCTGAATTTG+TGG | 0.428102 | 5.3:+23245022 | None:intergenic |
| AGAAAATACAGAAAAGGATC+TGG | 0.430299 | 5.3:-23244625 | MS.gene53483:CDS |
| GATCCATCCAACAGGATAAA+GGG | 0.433194 | 5.3:+23243743 | None:intergenic |
| TAGTCGTTGCTGGTTACAAC+TGG | 0.433888 | 5.3:-23245207 | MS.gene53483:CDS |
| TGAGGCATTTGCGATTGTAT+TGG | 0.440709 | 5.3:-23243207 | MS.gene53483:CDS |
| TGCAGGGGAAGGCGAGGACT+TGG | 0.440859 | 5.3:+23245118 | None:intergenic |
| GAGGTTTGAGTAGTCGTTGC+TGG | 0.442818 | 5.3:-23245217 | MS.gene53483:CDS |
| TAAAATGATTCTTACAAGAA+AGG | 0.457601 | 5.3:+23244581 | None:intergenic |
| TGATTAGTGTGGTCATATAG+AGG | 0.468432 | 5.3:+23243966 | None:intergenic |
| TCAAAGTTGTTTCATGTCAT+CGG | 0.468592 | 5.3:-23243535 | MS.gene53483:CDS |
| CTGGAAACATGTGGTATACT+TGG | 0.475749 | 5.3:-23244606 | MS.gene53483:CDS |
| TGCTAAAGAAAATACAGAAA+AGG | 0.496176 | 5.3:-23244631 | MS.gene53483:CDS |
| GAAAGATCCCTTTATCCTGT+TGG | 0.497748 | 5.3:-23243750 | MS.gene53483:CDS |
| GATCCCTTTATCCTGTTGGA+TGG | 0.503825 | 5.3:-23243746 | MS.gene53483:CDS |
| GGCTCCACACAACACAGTGC+AGG | 0.506857 | 5.3:+23245101 | None:intergenic |
| TTGATTGTAGATGCTGCTAT+AGG | 0.509718 | 5.3:-23241365 | MS.gene53483:intron |
| AATCATACCAAAGCAGGAAT+CGG | 0.516666 | 5.3:-23243948 | MS.gene53483:CDS |
| CACACTAATCATACCAAAGC+AGG | 0.522849 | 5.3:-23243954 | MS.gene53483:CDS |
| CTTTCAATTATCCAGGAGAA+GGG | 0.528394 | 5.3:-23243992 | MS.gene53483:intron |
| AATACAATCGCAAATGCCTC+AGG | 0.530998 | 5.3:+23243209 | None:intergenic |
| GCTCCACACAACACAGTGCA+GGG | 0.532225 | 5.3:+23245102 | None:intergenic |
| TTCCCCTGCACTGTGTTGTG+TGG | 0.538955 | 5.3:-23245105 | MS.gene53483:CDS |
| CATACATGGATCCATCCAAC+AGG | 0.548997 | 5.3:+23243735 | None:intergenic |
| CCAGTCAATGCGGTTAATGG+AGG | 0.564775 | 5.3:-23244667 | MS.gene53483:intron |
| TTATACCTTGAGGTATCAGT+TGG | 0.568198 | 5.3:+23243182 | None:intergenic |
| GACATGAAACAACTTTGAGA+AGG | 0.582373 | 5.3:+23243540 | None:intergenic |
| CTGCTTTGGTATGATTAGTG+TGG | 0.591645 | 5.3:+23243955 | None:intergenic |
| AGTTGGATCAATCACCTGGT+AGG | 0.599897 | 5.3:+23243491 | None:intergenic |
| AAGTTGTTTCATGTCATCGG+TGG | 0.601407 | 5.3:-23243532 | MS.gene53483:CDS |
| GATTAGTGTGGTCATATAGA+GGG | 0.602810 | 5.3:+23243967 | None:intergenic |
| ACAGATATCAGGAAGAAAAG+TGG | 0.604067 | 5.3:-23241341 | MS.gene53483:CDS |
| ACAGTGTAATGCCACAAATG+AGG | 0.604494 | 5.3:-23243796 | MS.gene53483:intron |
| ACACAACACAGTGCAGGGGA+AGG | 0.620815 | 5.3:+23245107 | None:intergenic |
| ACATGAAACAACTTTGAGAA+GGG | 0.633287 | 5.3:+23243541 | None:intergenic |
| ACACAGTGCAGGGGAAGGCG+AGG | 0.635341 | 5.3:+23245112 | None:intergenic |
| TACGATATGTATATCACGCA+CGG | 0.642307 | 5.3:+23244986 | None:intergenic |
| TGGCACCAACTGATACCTCA+AGG | 0.653936 | 5.3:-23243187 | MS.gene53483:intron |
| GCACACTCAATATTCCTACC+AGG | 0.654009 | 5.3:-23243505 | MS.gene53483:intron |
| ACTGTGTTGTGTGGAGCCAG+TGG | 0.659270 | 5.3:-23245096 | MS.gene53483:CDS |
| GTGTAATGCCACAAATGAGG+AGG | 0.661724 | 5.3:-23243793 | MS.gene53483:CDS |
| GAAAAGGATCTGGAAACATG+TGG | 0.667652 | 5.3:-23244615 | MS.gene53483:CDS |
| CTCCACACAACACAGTGCAG+GGG | 0.680286 | 5.3:+23245103 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCAGTTTATATTA+TGG | - | chr5.3:23241360-23241379 | MS.gene53483:intron | 10.0% |
| !!! | TTATTCTATTTTTTTACTAA+TGG | - | chr5.3:23244680-23244699 | MS.gene53483:intron | 10.0% |
| !! | AAAAAATAACATAAAACTGT+TGG | + | chr5.3:23243293-23243312 | None:intergenic | 15.0% |
| !! | AATTTGTATCTTAATATACA+AGG | - | chr5.3:23244740-23244759 | MS.gene53483:intron | 15.0% |
| !! | CAAAATAAATTGAAAGTTTA+AGG | - | chr5.3:23244123-23244142 | MS.gene53483:intron | 15.0% |
| !! | TGGAAAATATAAAATGAAAA+CGG | + | chr5.3:23241850-23241869 | None:intergenic | 15.0% |
| !!! | AACATTTGATTTAATGTAAT+TGG | - | chr5.3:23244088-23244107 | MS.gene53483:intron | 15.0% |
| !!! | ACATTTTCTAAAATTATTAC+TGG | - | chr5.3:23241705-23241724 | MS.gene53483:intron | 15.0% |
| !!! | ATTTAGAATACACTATATTT+TGG | - | chr5.3:23244824-23244843 | MS.gene53483:intron | 15.0% |
| !! | AAAGATTTCAAACCTTAAAT+TGG | + | chr5.3:23243813-23243832 | None:intergenic | 20.0% |
| !! | AATCAAATATTTCAAACCAT+AGG | + | chr5.3:23244492-23244511 | None:intergenic | 20.0% |
| !! | AGATAAATGCTTTATAAAGT+TGG | + | chr5.3:23243063-23243082 | None:intergenic | 20.0% |
| !! | ATGGAAAGAAAAAAAAAACT+AGG | + | chr5.3:23242826-23242845 | None:intergenic | 20.0% |
| !! | ATTATAATATAAGATGCTGA+TGG | + | chr5.3:23245102-23245121 | None:intergenic | 20.0% |
| !! | GATAAAGTTAATATCTTTCA+TGG | + | chr5.3:23242023-23242042 | None:intergenic | 20.0% |
| !! | TAAAATGATTCTTACAAGAA+AGG | + | chr5.3:23241956-23241975 | None:intergenic | 20.0% |
| !! | TAAACTTTACGAGTAATATT+TGG | - | chr5.3:23244298-23244317 | MS.gene53483:intron | 20.0% |
| !! | TGGAAGGAAAAAAAAATATA+AGG | - | chr5.3:23244844-23244863 | MS.gene53483:intron | 20.0% |
| !! | TTATAATATAAGATGCTGAT+GGG | + | chr5.3:23245101-23245120 | None:intergenic | 20.0% |
| !! | TTTCATAATTGTGCAAAAAA+TGG | - | chr5.3:23243416-23243435 | MS.gene53483:intron | 20.0% |
| !!! | AGGCTAATTTTAAAATTGTA+TGG | - | chr5.3:23244384-23244403 | MS.gene53483:intron | 20.0% |
| !!! | ATTTTAAAATTGTATGGAGA+AGG | - | chr5.3:23244390-23244409 | MS.gene53483:intron | 20.0% |
| !!! | CAGTTTTATGTTATTTTTTC+AGG | - | chr5.3:23243294-23243313 | MS.gene53483:intron | 20.0% |
| !!! | TTTGATTTAATGTAATTGGA+TGG | - | chr5.3:23244092-23244111 | MS.gene53483:intron | 20.0% |
| !!! | TTTTAAAATTGTATGGAGAA+GGG | - | chr5.3:23244391-23244410 | MS.gene53483:intron | 20.0% |
| !!! | TTTTGCACAATTATGAAAAT+TGG | + | chr5.3:23243414-23243433 | None:intergenic | 20.0% |
| ! | AAAAAAAACTAGGACATACA+TGG | + | chr5.3:23242816-23242835 | None:intergenic | 25.0% |
| ! | AAATATTTCAAACCATAGGT+TGG | + | chr5.3:23244488-23244507 | None:intergenic | 25.0% |
| ! | AACCTTAATATGTTACATTG+TGG | - | chr5.3:23244617-23244636 | MS.gene53483:CDS | 25.0% |
| ! | ACCTTAATATGTTACATTGT+GGG | - | chr5.3:23244618-23244637 | MS.gene53483:CDS | 25.0% |
| ! | ACTACTAACTAATTTAACCA+TGG | + | chr5.3:23243169-23243188 | None:intergenic | 25.0% |
| ! | ATAGTTAACTTATTAGTGAC+AGG | - | chr5.3:23244565-23244584 | MS.gene53483:intron | 25.0% |
| ! | ATATTAACTTTATCCATCCA+TGG | - | chr5.3:23242029-23242048 | MS.gene53483:intron | 25.0% |
| ! | GAATAATTTATTAGCGAAGT+TGG | + | chr5.3:23244666-23244685 | None:intergenic | 25.0% |
| ! | TATGGTCTAAAAAGGATTTA+TGG | + | chr5.3:23241390-23241409 | None:intergenic | 25.0% |
| ! | TATTATCGAGTGAATTAGAT+CGG | - | chr5.3:23243129-23243148 | MS.gene53483:intron | 25.0% |
| ! | TGCTAAAGAAAATACAGAAA+AGG | - | chr5.3:23241903-23241922 | MS.gene53483:intron | 25.0% |
| ! | TGTACAAAAACTCCAATTTA+AGG | - | chr5.3:23243798-23243817 | MS.gene53483:intron | 25.0% |
| ! | TTAAGAAACCATCCAATATT+GGG | - | chr5.3:23244325-23244344 | MS.gene53483:intron | 25.0% |
| ! | TTCAAAGGGAATTCATAAAT+AGG | - | chr5.3:23243199-23243218 | MS.gene53483:CDS | 25.0% |
| !! | AACGGCATAAATAATTTTCA+AGG | + | chr5.3:23241832-23241851 | None:intergenic | 25.0% |
| !! | AACTTACATTCTTTTTGGAT+TGG | - | chr5.3:23242638-23242657 | MS.gene53483:intron | 25.0% |
| !! | ACGGCATAAATAATTTTCAA+GGG | + | chr5.3:23241831-23241850 | None:intergenic | 25.0% |
| !! | TAGTAGTTGATATCTTCAAA+GGG | - | chr5.3:23243185-23243204 | MS.gene53483:intron | 25.0% |
| !! | TATTTTCTTTAGCAAGATCA+AGG | + | chr5.3:23241897-23241916 | None:intergenic | 25.0% |
| !! | TGAATAAACAGAATTTGTTC+AGG | - | chr5.3:23244364-23244383 | MS.gene53483:intron | 25.0% |
| !! | TTGCAAACTTACATTCTTTT+TGG | - | chr5.3:23242633-23242652 | MS.gene53483:intron | 25.0% |
| !! | TTTATATTTTCCAGTCAATG+CGG | - | chr5.3:23241857-23241876 | MS.gene53483:intron | 25.0% |
| !! | TTTTTCCAAAAGCTAAACTT+TGG | + | chr5.3:23242377-23242396 | None:intergenic | 25.0% |
| !!! | AGAATACACTATATTTTGGA+AGG | - | chr5.3:23244828-23244847 | MS.gene53483:intron | 25.0% |
| !!! | CATATTACAGCTTTTAATTC+AGG | - | chr5.3:23241481-23241500 | MS.gene53483:intron | 25.0% |
| !!! | GATTTCTATAATTAGCCTTA+TGG | - | chr5.3:23241796-23241815 | MS.gene53483:intron | 25.0% |
| !!! | TTACCATAGCATTTTGAAAT+AGG | + | chr5.3:23243540-23243559 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTTGGAAAAATCA+TGG | - | chr5.3:23242380-23242399 | MS.gene53483:intron | 25.0% |
| !!! | TTTTTCTTCCTTTAATTTGC+TGG | - | chr5.3:23244916-23244935 | MS.gene53483:intron | 25.0% |
| AACTATTGAATGTCTTGATG+AGG | + | chr5.3:23245072-23245091 | None:intergenic | 30.0% | |
| AAGACAAGTATTATACCTTG+AGG | + | chr5.3:23243365-23243384 | None:intergenic | 30.0% | |
| AAGCCTATTTCAAAATGCTA+TGG | - | chr5.3:23243534-23243553 | MS.gene53483:CDS | 30.0% | |
| AGAAAATACAGAAAAGGATC+TGG | - | chr5.3:23241909-23241928 | MS.gene53483:intron | 30.0% | |
| AGATCTTCTATATCGACAAA+TGG | + | chr5.3:23243923-23243942 | None:intergenic | 30.0% | |
| AGATTCGTTATCTGAATTTG+TGG | + | chr5.3:23241515-23241534 | None:intergenic | 30.0% | |
| ATCAACCTAACGATTAAAAC+TGG | - | chr5.3:23243255-23243274 | MS.gene53483:intron | 30.0% | |
| ATCTAGAGGAAAATATAAGC+AGG | + | chr5.3:23243470-23243489 | None:intergenic | 30.0% | |
| CAAATGTTTAGAAAAGCGAA+TGG | + | chr5.3:23242965-23242984 | None:intergenic | 30.0% | |
| GTTAAGAAACCATCCAATAT+TGG | - | chr5.3:23244324-23244343 | MS.gene53483:intron | 30.0% | |
| TAGATATAAGTCAAACCAGT+AGG | + | chr5.3:23242941-23242960 | None:intergenic | 30.0% | |
| TCCCACAATGTAACATATTA+AGG | + | chr5.3:23244622-23244641 | None:intergenic | 30.0% | |
| TGATGAGTTTAACGAAATCA+TGG | - | chr5.3:23242327-23242346 | MS.gene53483:intron | 30.0% | |
| TTTGTCGATATAGAAGATCT+AGG | - | chr5.3:23243923-23243942 | MS.gene53483:intron | 30.0% | |
| ! | AAGAGTACATACATAAGAGA+GGG | + | chr5.3:23242181-23242200 | None:intergenic | 30.0% |
| ! | ACATGAAACAACTTTGAGAA+GGG | + | chr5.3:23242996-23243015 | None:intergenic | 30.0% |
| ! | ATAGGTTTTACAACACTGTT+GGG | - | chr5.3:23241772-23241791 | MS.gene53483:intron | 30.0% |
| ! | ATCTTTGATTTACGCTAACA+AGG | - | chr5.3:23243827-23243846 | MS.gene53483:intron | 30.0% |
| ! | ATTGGAGTTTTTGTACACAT+TGG | + | chr5.3:23243795-23243814 | None:intergenic | 30.0% |
| ! | GGTTACTTTATGGTCTAAAA+AGG | + | chr5.3:23241398-23241417 | None:intergenic | 30.0% |
| ! | GTAGTAGTTGATATCTTCAA+AGG | - | chr5.3:23243184-23243203 | MS.gene53483:intron | 30.0% |
| ! | TCAAAGTTGTTTCATGTCAT+CGG | - | chr5.3:23242999-23243018 | MS.gene53483:intron | 30.0% |
| ! | TTTGAAATAGGCTTAAACTG+TGG | + | chr5.3:23243528-23243547 | None:intergenic | 30.0% |
| !! | TAAATAATTTTCAAGGGCAG+TGG | + | chr5.3:23241825-23241844 | None:intergenic | 30.0% |
| !! | TTATGCCAGTTTTAATCGTT+AGG | + | chr5.3:23243263-23243282 | None:intergenic | 30.0% |
| !! | TTCTATAATTAGCCTTATGG+AGG | - | chr5.3:23241799-23241818 | MS.gene53483:intron | 30.0% |
| AACAATGACTACTCGTTGTT+TGG | - | chr5.3:23244798-23244817 | MS.gene53483:intron | 35.0% | |
| AAGCTCACACAGATTAACAT+AGG | + | chr5.3:23242905-23242924 | None:intergenic | 35.0% | |
| AATCATACCAAAGCAGGAAT+CGG | - | chr5.3:23242586-23242605 | MS.gene53483:intron | 35.0% | |
| AATGTGTGCTATATCCATTG+TGG | + | chr5.3:23243875-23243894 | None:intergenic | 35.0% | |
| ACAGATATCAGGAAGAAAAG+TGG | - | chr5.3:23245193-23245212 | MS.gene53483:CDS | 35.0% | |
| AGCTCACACAGATTAACATA+GGG | + | chr5.3:23242904-23242923 | None:intergenic | 35.0% | |
| ATAAAGTTGGATCAATCACC+TGG | + | chr5.3:23243050-23243069 | None:intergenic | 35.0% | |
| ATAGAGATTCAGCACATGTT+TGG | - | chr5.3:23242299-23242318 | MS.gene53483:intron | 35.0% | |
| ATAGCACACATTTGTTTCCA+CGG | - | chr5.3:23243883-23243902 | MS.gene53483:intron | 35.0% | |
| ATGTGTGCTATATCCATTGT+GGG | + | chr5.3:23243874-23243893 | None:intergenic | 35.0% | |
| ATTTGACCGTGAAAACAAAC+AGG | - | chr5.3:23243987-23244006 | MS.gene53483:intron | 35.0% | |
| CTAGTTGTATGTTCTTTCTC+AGG | - | chr5.3:23243648-23243667 | MS.gene53483:intron | 35.0% | |
| CTTAGAATATCCATACCATC+CGG | + | chr5.3:23243701-23243720 | None:intergenic | 35.0% | |
| CTTTCAATTATCCAGGAGAA+GGG | - | chr5.3:23242542-23242561 | MS.gene53483:intron | 35.0% | |
| CTTTCCATATTGCAAGTCTT+AGG | - | chr5.3:23242838-23242857 | MS.gene53483:intron | 35.0% | |
| GACTTGTCTTTCAATTATCC+AGG | - | chr5.3:23242535-23242554 | MS.gene53483:intron | 35.0% | |
| GATGTTCGAAACAAGGAAAT+TGG | - | chr5.3:23244259-23244278 | MS.gene53483:intron | 35.0% | |
| GATTAGTGTGGTCATATAGA+GGG | + | chr5.3:23242570-23242589 | None:intergenic | 35.0% | |
| GTCAAATGGCGAATACATAT+TGG | + | chr5.3:23243974-23243993 | None:intergenic | 35.0% | |
| GTTAACTGTCACAGTATCAT+AGG | - | chr5.3:23245215-23245234 | MS.gene53483:CDS | 35.0% | |
| GTTATCTGATGTTCGAAACA+AGG | - | chr5.3:23244252-23244271 | MS.gene53483:intron | 35.0% | |
| GTTTCAATTCACAGATGCTA+TGG | - | chr5.3:23243577-23243596 | MS.gene53483:intron | 35.0% | |
| TACACATGGTTTCCATTATC+TGG | + | chr5.3:23244436-23244455 | None:intergenic | 35.0% | |
| TACGATATGTATATCACGCA+CGG | + | chr5.3:23241551-23241570 | None:intergenic | 35.0% | |
| TACTTAGCATCTACATCTAG+AGG | + | chr5.3:23243484-23243503 | None:intergenic | 35.0% | |
| TATTGAATGTCTTGATGAGG+CGG | + | chr5.3:23245069-23245088 | None:intergenic | 35.0% | |
| TCTTTCAATTATCCAGGAGA+AGG | - | chr5.3:23242541-23242560 | MS.gene53483:intron | 35.0% | |
| TGAGTTTAACGAAATCATGG+TGG | - | chr5.3:23242330-23242349 | MS.gene53483:intron | 35.0% | |
| TGATTAGTGTGGTCATATAG+AGG | + | chr5.3:23242571-23242590 | None:intergenic | 35.0% | |
| TGTACAAAAACTCCAACCTA+TGG | - | chr5.3:23244473-23244492 | MS.gene53483:intron | 35.0% | |
| TTAGCAATAGTAGTTCCTAC+TGG | - | chr5.3:23242923-23242942 | MS.gene53483:intron | 35.0% | |
| TTGATTGTAGATGCTGCTAT+AGG | - | chr5.3:23245169-23245188 | MS.gene53483:CDS | 35.0% | |
| TTTAATGTAATCACACGTGC+CGG | + | chr5.3:23241680-23241699 | None:intergenic | 35.0% | |
| TTTAGCACATGTTGTTAGCA+GGG | - | chr5.3:23242672-23242691 | MS.gene53483:intron | 35.0% | |
| ! | ATTGCAACAAAGATTAGCTG+AGG | + | chr5.3:23242138-23242157 | None:intergenic | 35.0% |
| ! | CAAGAGTACATACATAAGAG+AGG | + | chr5.3:23242182-23242201 | None:intergenic | 35.0% |
| ! | CATAGGTTTTACAACACTGT+TGG | - | chr5.3:23241771-23241790 | MS.gene53483:intron | 35.0% |
| ! | GACATGAAACAACTTTGAGA+AGG | + | chr5.3:23242997-23243016 | None:intergenic | 35.0% |
| ! | GGATATTCTAAGAAGTTGTC+CGG | - | chr5.3:23243709-23243728 | MS.gene53483:intron | 35.0% |
| ! | GTTGGAGTTTTTGTACACAT+TGG | + | chr5.3:23244470-23244489 | None:intergenic | 35.0% |
| ! | GTTTTGTGATCATAATGCCA+TGG | + | chr5.3:23242049-23242068 | None:intergenic | 35.0% |
| ! | TCTTTCGCTGTCTTCTTTTA+TGG | - | chr5.3:23242454-23242473 | MS.gene53483:intron | 35.0% |
| ! | TTATACCTTGAGGTATCAGT+TGG | + | chr5.3:23243355-23243374 | None:intergenic | 35.0% |
| ! | TTTTAGCACATGTTGTTAGC+AGG | - | chr5.3:23242671-23242690 | MS.gene53483:intron | 35.0% |
| ! | TTTTGTTCATCTTGATCCAC+TGG | + | chr5.3:23241457-23241476 | None:intergenic | 35.0% |
| !! | AACAAGCCTGTTTGTTTTCA+CGG | + | chr5.3:23243996-23244015 | None:intergenic | 35.0% |
| !! | ACAGCTTTTAATTCAGGAGA+TGG | - | chr5.3:23241487-23241506 | MS.gene53483:intron | 35.0% |
| !! | TAAATTGACTTGTGTGCTGA+AGG | - | chr5.3:23241992-23242011 | MS.gene53483:intron | 35.0% |
| !! | TGTTTGTTTTCACGGTCAAA+TGG | + | chr5.3:23243988-23244007 | None:intergenic | 35.0% |
| !!! | AAGCTCCAAAGTTTAGCTTT+TGG | - | chr5.3:23242369-23242388 | MS.gene53483:intron | 35.0% |
| AATACAATCGCAAATGCCTC+AGG | + | chr5.3:23243328-23243347 | None:intergenic | 40.0% | |
| AATATCCATACCATCCGGTT+CGG | + | chr5.3:23243696-23243715 | None:intergenic | 40.0% | |
| AATGAAAATAGCAGCAGCAG+TGG | + | chr5.3:23244942-23244961 | None:intergenic | 40.0% | |
| ACAGTGTAATGCCACAAATG+AGG | - | chr5.3:23242738-23242757 | MS.gene53483:intron | 40.0% | |
| AGATTCATGCAGCCCAATAT+TGG | + | chr5.3:23244340-23244359 | None:intergenic | 40.0% | |
| ATTAGCGAAGTTGGATCTAG+CGG | + | chr5.3:23244657-23244676 | None:intergenic | 40.0% | |
| CACACTAATCATACCAAAGC+AGG | - | chr5.3:23242580-23242599 | MS.gene53483:intron | 40.0% | |
| CCACACAAAGAACCAGATAA+TGG | - | chr5.3:23243746-23243765 | MS.gene53483:CDS | 40.0% | |
| CGGAATTCTTATTGACACCA+TGG | - | chr5.3:23243149-23243168 | MS.gene53483:intron | 40.0% | |
| CTACTTCATTTGATGCTGCT+AGG | - | chr5.3:23242217-23242236 | MS.gene53483:intron | 40.0% | |
| CTGCTATAGGAACAGATATC+AGG | - | chr5.3:23245182-23245201 | MS.gene53483:CDS | 40.0% | |
| CTGCTTTGGTATGATTAGTG+TGG | + | chr5.3:23242582-23242601 | None:intergenic | 40.0% | |
| CTGGAAACATGTGGTATACT+TGG | - | chr5.3:23241928-23241947 | MS.gene53483:intron | 40.0% | |
| GAAAACTTCCTCCTCATTTG+TGG | + | chr5.3:23242752-23242771 | None:intergenic | 40.0% | |
| GAAAAGGATCTGGAAACATG+TGG | - | chr5.3:23241919-23241938 | MS.gene53483:intron | 40.0% | |
| GAAAATTGGCTGCAACTACA+AGG | + | chr5.3:23243400-23243419 | None:intergenic | 40.0% | |
| GAAAGATCCCTTTATCCTGT+TGG | - | chr5.3:23242784-23242803 | MS.gene53483:intron | 40.0% | |
| GATCCATCCAACAGGATAAA+GGG | + | chr5.3:23242794-23242813 | None:intergenic | 40.0% | |
| GCGAATACATATTGGACTCA+TGG | + | chr5.3:23243966-23243985 | None:intergenic | 40.0% | |
| GCTCACACAGATTAACATAG+GGG | + | chr5.3:23242903-23242922 | None:intergenic | 40.0% | |
| GTTGCCTAAGACTTGCAATA+TGG | + | chr5.3:23242845-23242864 | None:intergenic | 40.0% | |
| TGGATGCGAAACAAAGAACT+TGG | - | chr5.3:23242474-23242493 | MS.gene53483:intron | 40.0% | |
| TGTGATCATAATGCCATGGA+TGG | + | chr5.3:23242045-23242064 | None:intergenic | 40.0% | |
| TGTGTTCAGACATGCAATAG+TGG | + | chr5.3:23241578-23241597 | None:intergenic | 40.0% | |
| TTCATTTATGTCGCAGAGAG+TGG | - | chr5.3:23244956-23244975 | MS.gene53483:intron | 40.0% | |
| TTTCCAGTCAATGCGGTTAA+TGG | - | chr5.3:23241864-23241883 | MS.gene53483:intron | 40.0% | |
| ! | AAGTTGTTTCATGTCATCGG+TGG | - | chr5.3:23243002-23243021 | MS.gene53483:intron | 40.0% |
| ! | GCACTGACAATTCAGATTGA+AGG | - | chr5.3:23241643-23241662 | MS.gene53483:intron | 40.0% |
| ! | TGAGGCATTTGCGATTGTAT+TGG | - | chr5.3:23243327-23243346 | MS.gene53483:intron | 40.0% |
| !! | CCATTATCTGGTTCTTTGTG+TGG | + | chr5.3:23243749-23243768 | None:intergenic | 40.0% |
| !! | GTTTTGATCGATGGCAAGAT+TGG | + | chr5.3:23242423-23242442 | None:intergenic | 40.0% |
| !! | TGCAGTGTGTAGCTCTAATT+GGG | + | chr5.3:23244779-23244798 | None:intergenic | 40.0% |
| !! | TTGCAGTGTGTAGCTCTAAT+TGG | + | chr5.3:23244780-23244799 | None:intergenic | 40.0% |
| !! | TTTTCAGGCAATGATTCCTG+AGG | - | chr5.3:23243309-23243328 | MS.gene53483:intron | 40.0% |
| !!! | TGAGTGCATGTTTTGATCGA+TGG | + | chr5.3:23242432-23242451 | None:intergenic | 40.0% |
| AGCAGTGGCCAGCAAATTAA+AGG | + | chr5.3:23244927-23244946 | None:intergenic | 45.0% | |
| AGTTGGATCAATCACCTGGT+AGG | + | chr5.3:23243046-23243065 | None:intergenic | 45.0% | |
| ATGTTCTTTCTCAGGAGCTG+TGG | - | chr5.3:23243656-23243675 | MS.gene53483:intron | 45.0% | |
| CAGCACATACTATCTCACGA+CGG | - | chr5.3:23244533-23244552 | MS.gene53483:intron | 45.0% | |
| CATACATGGATCCATCCAAC+AGG | + | chr5.3:23242802-23242821 | None:intergenic | 45.0% | |
| CCACACAGAGAACCAGATAA+TGG | - | chr5.3:23244421-23244440 | MS.gene53483:intron | 45.0% | |
| GATCCCTTTATCCTGTTGGA+TGG | - | chr5.3:23242788-23242807 | MS.gene53483:intron | 45.0% | |
| GCACACTCAATATTCCTACC+AGG | - | chr5.3:23243029-23243048 | MS.gene53483:intron | 45.0% | |
| GGATCCATCCAACAGGATAA+AGG | + | chr5.3:23242795-23242814 | None:intergenic | 45.0% | |
| GTATGAACTGTCCCAATCGT+CGG | + | chr5.3:23244987-23245006 | None:intergenic | 45.0% | |
| GTGTAATGCCACAAATGAGG+AGG | - | chr5.3:23242741-23242760 | MS.gene53483:intron | 45.0% | |
| TACACAGGGTTGCCATTATC+TGG | + | chr5.3:23243761-23243780 | None:intergenic | 45.0% | |
| TCATGCAGCCCAATATTGGA+TGG | + | chr5.3:23244336-23244355 | None:intergenic | 45.0% | |
| TCTAAGAAGTTGTCCGGAGA+GGG | - | chr5.3:23243715-23243734 | MS.gene53483:intron | 45.0% | |
| TGTCTATGACGGTGCTTCAT+AGG | - | chr5.3:23241754-23241773 | MS.gene53483:intron | 45.0% | |
| ! | GCGAGGACTTGGTTACTTTA+TGG | + | chr5.3:23241408-23241427 | None:intergenic | 45.0% |
| ! | TAGTCGTTGCTGGTTACAAC+TGG | - | chr5.3:23241327-23241346 | MS.gene53483:CDS | 45.0% |
| ! | TTCTAAGAAGTTGTCCGGAG+AGG | - | chr5.3:23243714-23243733 | MS.gene53483:intron | 45.0% |
| !! | CCATTATCTGGTTCTCTGTG+TGG | + | chr5.3:23244424-23244443 | None:intergenic | 45.0% |
| !! | TGAAGCACCGTCATAGACAT+CGG | + | chr5.3:23241753-23241772 | None:intergenic | 45.0% |
| !! | TTAGATGCCGATTCCTGCTT+TGG | + | chr5.3:23242596-23242615 | None:intergenic | 45.0% |
| CACATGTTGTTAGCAGGGCT+TGG | - | chr5.3:23242677-23242696 | MS.gene53483:intron | 50.0% | |
| CCAGTCAATGCGGTTAATGG+AGG | - | chr5.3:23241867-23241886 | MS.gene53483:intron | 50.0% | |
| CGAAGTTGGATCTAGCGGAA+GGG | + | chr5.3:23244652-23244671 | None:intergenic | 50.0% | |
| CGGACACGACACTGATACAT+TGG | + | chr5.3:23241733-23241752 | None:intergenic | 50.0% | |
| CTAAGAAGTTGTCCGGAGAG+GGG | - | chr5.3:23243716-23243735 | MS.gene53483:intron | 50.0% | |
| GAAGTTGGATCTAGCGGAAG+GGG | + | chr5.3:23244651-23244670 | None:intergenic | 50.0% | |
| GTCGTGTCCGATGTCTATGA+CGG | - | chr5.3:23241743-23241762 | MS.gene53483:intron | 50.0% | |
| TATAGAGGGTTCCCTTCTCC+TGG | + | chr5.3:23242556-23242575 | None:intergenic | 50.0% | |
| TCTCTTTCGCCTAACCGAAC+CGG | - | chr5.3:23243679-23243698 | MS.gene53483:intron | 50.0% | |
| TGGAGCAGTGCTCATACACA+TGG | + | chr5.3:23244450-23244469 | None:intergenic | 50.0% | |
| TGGCACCAACTGATACCTCA+AGG | - | chr5.3:23243347-23243366 | MS.gene53483:intron | 50.0% | |
| TGGTGAGAGTCATATCACCG+TGG | + | chr5.3:23243903-23243922 | None:intergenic | 50.0% | |
| TGTGGATGAAATCCCCTCTC+CGG | + | chr5.3:23243731-23243750 | None:intergenic | 50.0% | |
| ! | CCTCCATTAACCGCATTGAC+TGG | + | chr5.3:23241870-23241889 | None:intergenic | 50.0% |
| ACACAACACAGTGCAGGGGA+AGG | + | chr5.3:23241430-23241449 | None:intergenic | 55.0% | |
| ACTGTGTTGTGTGGAGCCAG+TGG | - | chr5.3:23241438-23241457 | MS.gene53483:intron | 55.0% | |
| AGAGTGGATCCACCGACGAT+TGG | - | chr5.3:23244972-23244991 | MS.gene53483:intron | 55.0% | |
| CAGCGCATACTGTCCCACAA+TGG | - | chr5.3:23243858-23243877 | MS.gene53483:intron | 55.0% | |
| CCTAACCGAACCGGATGGTA+TGG | - | chr5.3:23243688-23243707 | MS.gene53483:intron | 55.0% | |
| CTCCACACAACACAGTGCAG+GGG | + | chr5.3:23241434-23241453 | None:intergenic | 55.0% | |
| GAGTGGATCCACCGACGATT+GGG | - | chr5.3:23244973-23244992 | MS.gene53483:intron | 55.0% | |
| GCGAAGTTGGATCTAGCGGA+AGG | + | chr5.3:23244653-23244672 | None:intergenic | 55.0% | |
| GCTCCACACAACACAGTGCA+GGG | + | chr5.3:23241435-23241454 | None:intergenic | 55.0% | |
| TGAACTGTCCCAATCGTCGG+TGG | + | chr5.3:23244984-23245003 | None:intergenic | 55.0% | |
| TGGAGCAGTGCTCGTACACA+GGG | + | chr5.3:23243775-23243794 | None:intergenic | 55.0% | |
| TTCCCCTGCACTGTGTTGTG+TGG | - | chr5.3:23241429-23241448 | MS.gene53483:intron | 55.0% | |
| TTGGAGCAGTGCTCGTACAC+AGG | + | chr5.3:23243776-23243795 | None:intergenic | 55.0% | |
| TTTCGCCTAACCGAACCGGA+TGG | - | chr5.3:23243683-23243702 | MS.gene53483:intron | 55.0% | |
| ! | ATTGAAGGTGCGTCCGACAC+CGG | - | chr5.3:23241658-23241677 | MS.gene53483:intron | 55.0% |
| ! | GTAATCACACGTGCCGGTGT+CGG | + | chr5.3:23241674-23241693 | None:intergenic | 55.0% |
| !! | CCATACCATCCGGTTCGGTT+AGG | + | chr5.3:23243691-23243710 | None:intergenic | 55.0% |
| CAAGGGCAGTGGCCTCCATA+AGG | + | chr5.3:23241814-23241833 | None:intergenic | 60.0% | |
| GGCTCCACACAACACAGTGC+AGG | + | chr5.3:23241436-23241455 | None:intergenic | 60.0% | |
| ACACAGTGCAGGGGAAGGCG+AGG | + | chr5.3:23241425-23241444 | None:intergenic | 65.0% | |
| TGCAGGGGAAGGCGAGGACT+TGG | + | chr5.3:23241419-23241438 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 23241320 | 23245236 | 23241320 | ID=MS.gene53483 |
| chr5.3 | mRNA | 23241320 | 23245236 | 23241320 | ID=MS.gene53483.t1;Parent=MS.gene53483 |
| chr5.3 | exon | 23244989 | 23245236 | 23244989 | ID=MS.gene53483.t1.exon1;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23244989 | 23245236 | 23244989 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| chr5.3 | exon | 23244596 | 23244685 | 23244596 | ID=MS.gene53483.t1.exon2;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23244596 | 23244685 | 23244596 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| chr5.3 | exon | 23243937 | 23243999 | 23243937 | ID=MS.gene53483.t1.exon3;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23243937 | 23243999 | 23243937 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| chr5.3 | exon | 23243740 | 23243814 | 23243740 | ID=MS.gene53483.t1.exon4;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23243740 | 23243814 | 23243740 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| chr5.3 | exon | 23243506 | 23243568 | 23243506 | ID=MS.gene53483.t1.exon5;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23243506 | 23243568 | 23243506 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| chr5.3 | exon | 23243188 | 23243240 | 23243188 | ID=MS.gene53483.t1.exon6;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23243188 | 23243240 | 23243188 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| chr5.3 | exon | 23241320 | 23241377 | 23241320 | ID=MS.gene53483.t1.exon7;Parent=MS.gene53483.t1 |
| chr5.3 | CDS | 23241320 | 23241377 | 23241320 | ID=cds.MS.gene53483.t1;Parent=MS.gene53483.t1 |
| Gene Sequence |
| Protein sequence |
