Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54643.t1 | XP_013450818.1 | 81.3 | 241 | 37 | 3 | 1 | 241 | 1 | 233 | 4.20E-102 | 380.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54643.t1 | A2YZ24 | 58.4 | 238 | 95 | 2 | 1 | 238 | 1 | 234 | 3.5e-73 | 276.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54643.t1 | A0A072U6Z0 | 81.3 | 241 | 37 | 3 | 1 | 241 | 1 | 233 | 3.1e-102 | 380.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55828 | MS.gene54643 | PPI |
| MS.gene048962 | MS.gene54643 | PPI |
| MS.gene044269 | MS.gene54643 | PPI |
| MS.gene54643 | MS.gene81949 | PPI |
| MS.gene009331 | MS.gene54643 | PPI |
| MS.gene54643 | MS.gene25769 | PPI |
| MS.gene31850 | MS.gene54643 | PPI |
| MS.gene90281 | MS.gene54643 | PPI |
| MS.gene69746 | MS.gene54643 | PPI |
| MS.gene02646 | MS.gene54643 | PPI |
| MS.gene013686 | MS.gene54643 | PPI |
| MS.gene02493 | MS.gene54643 | PPI |
| MS.gene54643 | MS.gene93151 | PPI |
| MS.gene009329 | MS.gene54643 | PPI |
| MS.gene52346 | MS.gene54643 | PPI |
| MS.gene026679 | MS.gene54643 | PPI |
| MS.gene54643 | MS.gene70529 | PPI |
| MS.gene54643 | MS.gene46188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54643.t1 | MTR_6g007633 | 84.647 | 241 | 31 | 2 | 1 | 241 | 1 | 235 | 6.18e-144 | 402 |
| MS.gene54643.t1 | MTR_6g007623 | 81.328 | 241 | 37 | 3 | 1 | 241 | 1 | 233 | 3.31e-135 | 380 |
| MS.gene54643.t1 | MTR_6g007637 | 75.455 | 220 | 51 | 1 | 1 | 220 | 2 | 218 | 8.78e-119 | 339 |
| MS.gene54643.t1 | MTR_6g007610 | 55.285 | 246 | 92 | 3 | 1 | 235 | 1 | 239 | 6.39e-90 | 265 |
| MS.gene54643.t1 | MTR_8g099730 | 51.082 | 231 | 101 | 3 | 6 | 228 | 16 | 242 | 2.26e-75 | 229 |
| MS.gene54643.t1 | MTR_3g080990 | 52.402 | 229 | 105 | 3 | 1 | 229 | 1 | 225 | 2.37e-73 | 224 |
| MS.gene54643.t1 | MTR_4g106990 | 54.726 | 201 | 85 | 3 | 28 | 228 | 35 | 229 | 1.88e-63 | 198 |
| MS.gene54643.t1 | MTR_1g029380 | 45.116 | 215 | 113 | 4 | 10 | 224 | 7 | 216 | 1.11e-50 | 166 |
| MS.gene54643.t1 | MTR_8g099730 | 48.333 | 180 | 81 | 3 | 57 | 228 | 3 | 178 | 1.39e-50 | 164 |
| MS.gene54643.t1 | MTR_3g089125 | 44.344 | 221 | 110 | 5 | 12 | 232 | 9 | 216 | 1.62e-50 | 165 |
| MS.gene54643.t1 | MTR_2g436310 | 46.729 | 214 | 106 | 5 | 11 | 224 | 8 | 213 | 1.11e-49 | 163 |
| MS.gene54643.t1 | MTR_8g042490 | 38.667 | 225 | 129 | 4 | 8 | 232 | 14 | 229 | 1.55e-45 | 152 |
| MS.gene54643.t1 | MTR_1g028460 | 39.655 | 232 | 129 | 4 | 5 | 229 | 3 | 230 | 4.83e-44 | 149 |
| MS.gene54643.t1 | MTR_2g073190 | 38.839 | 224 | 131 | 4 | 6 | 229 | 12 | 229 | 2.19e-42 | 152 |
| MS.gene54643.t1 | MTR_8g096310 | 35.294 | 221 | 134 | 5 | 10 | 229 | 11 | 223 | 1.71e-39 | 138 |
| MS.gene54643.t1 | MTR_5g067530 | 38.942 | 208 | 121 | 4 | 10 | 217 | 12 | 213 | 6.54e-39 | 136 |
| MS.gene54643.t1 | MTR_8g096320 | 39.167 | 240 | 125 | 5 | 10 | 234 | 11 | 244 | 7.77e-39 | 135 |
| MS.gene54643.t1 | MTR_3g098910 | 36.239 | 218 | 132 | 4 | 12 | 229 | 13 | 223 | 1.01e-37 | 134 |
| MS.gene54643.t1 | MTR_3g090940 | 33.913 | 230 | 144 | 4 | 4 | 231 | 2 | 225 | 1.27e-37 | 132 |
| MS.gene54643.t1 | MTR_5g092600 | 38.785 | 214 | 120 | 6 | 12 | 223 | 14 | 218 | 4.61e-37 | 130 |
| MS.gene54643.t1 | MTR_3g090950 | 34.783 | 230 | 142 | 4 | 4 | 231 | 2 | 225 | 4.26e-36 | 128 |
| MS.gene54643.t1 | MTR_2g007890 | 34.951 | 206 | 127 | 4 | 12 | 217 | 16 | 214 | 6.65e-35 | 126 |
| MS.gene54643.t1 | MTR_7g007490 | 36.364 | 220 | 133 | 5 | 10 | 229 | 12 | 224 | 4.99e-34 | 123 |
| MS.gene54643.t1 | MTR_7g405710 | 35.498 | 231 | 135 | 7 | 12 | 241 | 13 | 230 | 4.37e-33 | 121 |
| MS.gene54643.t1 | MTR_3g098930 | 39.572 | 187 | 107 | 4 | 10 | 196 | 12 | 192 | 3.41e-31 | 114 |
| MS.gene54643.t1 | MTR_7g405730 | 34.434 | 212 | 129 | 5 | 12 | 221 | 13 | 216 | 8.35e-30 | 112 |
| MS.gene54643.t1 | MTR_8g096320 | 35.751 | 193 | 103 | 5 | 57 | 234 | 3 | 189 | 3.53e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54643.t1 | AT5G62850 | 54.783 | 230 | 99 | 3 | 1 | 229 | 1 | 226 | 4.09e-83 | 248 |
| MS.gene54643.t1 | AT4G10850 | 48.945 | 237 | 118 | 2 | 5 | 241 | 7 | 240 | 1.63e-78 | 237 |
| MS.gene54643.t1 | AT3G28007 | 59.633 | 218 | 84 | 2 | 1 | 218 | 1 | 214 | 1.06e-77 | 235 |
| MS.gene54643.t1 | AT5G62850 | 54.455 | 202 | 88 | 2 | 1 | 202 | 1 | 198 | 1.21e-72 | 221 |
| MS.gene54643.t1 | AT5G40260 | 51.376 | 218 | 105 | 1 | 1 | 218 | 1 | 217 | 1.72e-71 | 218 |
| MS.gene54643.t1 | AT1G66770 | 46.725 | 229 | 119 | 2 | 5 | 233 | 7 | 232 | 1.13e-68 | 212 |
| MS.gene54643.t1 | AT5G40260 | 50.990 | 202 | 98 | 1 | 1 | 202 | 1 | 201 | 4.04e-66 | 204 |
| MS.gene54643.t1 | AT4G15920 | 43.478 | 207 | 112 | 3 | 11 | 217 | 8 | 209 | 2.39e-53 | 172 |
| MS.gene54643.t1 | AT1G21460 | 44.444 | 225 | 120 | 4 | 5 | 229 | 2 | 221 | 1.21e-51 | 168 |
| MS.gene54643.t1 | AT3G16690 | 38.393 | 224 | 131 | 4 | 11 | 234 | 8 | 224 | 2.68e-47 | 156 |
| MS.gene54643.t1 | AT3G16690 | 38.393 | 224 | 131 | 4 | 11 | 234 | 43 | 259 | 4.88e-47 | 157 |
| MS.gene54643.t1 | AT1G21460 | 44.388 | 196 | 104 | 4 | 4 | 199 | 1 | 191 | 1.61e-43 | 146 |
| MS.gene54643.t1 | AT5G13170 | 34.821 | 224 | 139 | 4 | 1 | 224 | 4 | 220 | 4.99e-42 | 145 |
| MS.gene54643.t1 | AT3G14770 | 36.842 | 228 | 136 | 4 | 5 | 232 | 11 | 230 | 3.30e-41 | 141 |
| MS.gene54643.t1 | AT5G50800 | 37.668 | 223 | 131 | 5 | 10 | 229 | 11 | 228 | 1.98e-40 | 140 |
| MS.gene54643.t1 | AT5G23660 | 37.719 | 228 | 135 | 5 | 10 | 236 | 13 | 234 | 3.66e-40 | 140 |
| MS.gene54643.t1 | AT4G25010 | 36.449 | 214 | 131 | 4 | 1 | 214 | 2 | 210 | 8.07e-39 | 136 |
| MS.gene54643.t1 | AT3G48740 | 36.404 | 228 | 138 | 5 | 10 | 236 | 13 | 234 | 1.58e-38 | 135 |
| MS.gene54643.t1 | AT5G53190 | 38.498 | 213 | 125 | 3 | 7 | 217 | 5 | 213 | 1.17e-37 | 132 |
| MS.gene54643.t1 | AT5G50790 | 32.889 | 225 | 145 | 4 | 2 | 226 | 3 | 221 | 1.87e-37 | 133 |
| MS.gene54643.t1 | AT2G39060 | 34.419 | 215 | 133 | 4 | 12 | 226 | 13 | 219 | 5.28e-31 | 115 |
| MS.gene54643.t1 | AT3G16690 | 31.795 | 195 | 123 | 4 | 11 | 205 | 8 | 192 | 2.03e-24 | 96.7 |
Find 64 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTCTTCTTGGAATTCT+TGG | 0.104803 | 6.1:+3129576 | None:intergenic |
| CATTGTTGAATTGTGCATTT+TGG | 0.177365 | 6.1:-3129708 | MS.gene54643:CDS |
| TCTCTAATTTCAGAAGTATA+TGG | 0.230735 | 6.1:-3129406 | MS.gene54643:intron |
| ACGCACCCTTCCTTTCTTCT+TGG | 0.244879 | 6.1:+3129567 | None:intergenic |
| TTCAACAATGTTGCTAAGTA+TGG | 0.264358 | 6.1:+3129721 | None:intergenic |
| CGTAACGTTGTTGGTATCAT+AGG | 0.284067 | 6.1:-3130747 | MS.gene54643:intron |
| CCCCTTTGACCTTTATGTTC+TGG | 0.317767 | 6.1:-3129030 | MS.gene54643:intron |
| TACCAACAATTAAAGACCTT+TGG | 0.329584 | 6.1:+3129307 | None:intergenic |
| TTGATAATCTTGTAGAAAGT+TGG | 0.335730 | 6.1:+3129775 | None:intergenic |
| GTGTGAAATACATGCCATTC+TGG | 0.340578 | 6.1:-3129109 | MS.gene54643:CDS |
| TCATACTATATGGCTATTAC+TGG | 0.341787 | 6.1:-3128837 | MS.gene54643:CDS |
| ACTATTCAGCTCATACTATA+TGG | 0.346925 | 6.1:-3128847 | MS.gene54643:CDS |
| CTCTAATTTCAGAAGTATAT+GGG | 0.350155 | 6.1:-3129405 | MS.gene54643:intron |
| TGTGCACCCAAACAGCCTTT+TGG | 0.359306 | 6.1:-3129665 | MS.gene54643:CDS |
| ACTTCTGCAATGGACTTTGC+TGG | 0.366094 | 6.1:-3129073 | MS.gene54643:CDS |
| AATGTTGCTAAGTATGGATC+TGG | 0.369740 | 6.1:+3129727 | None:intergenic |
| GTGACGACCAAAAGGCTGTT+TGG | 0.401052 | 6.1:+3129658 | None:intergenic |
| AACAAGTCCAACACCATTGA+TGG | 0.405041 | 6.1:+3129636 | None:intergenic |
| ACCAACAATTAAAGACCTTT+GGG | 0.405429 | 6.1:+3129308 | None:intergenic |
| AGGCTGTTTGGGTGCACAAA+AGG | 0.410351 | 6.1:+3129670 | None:intergenic |
| GATCAGACTGCAGTCGCAAC+TGG | 0.411701 | 6.1:+3128763 | None:intergenic |
| AAATCAGATTGATGATGATA+AGG | 0.420470 | 6.1:-3128803 | MS.gene54643:CDS |
| TGGCATGTATTTCACACTCT+TGG | 0.431195 | 6.1:+3129115 | None:intergenic |
| ACCAGAACATAAAGGTCAAA+GGG | 0.444154 | 6.1:+3129029 | None:intergenic |
| TTGCAGATCAGCAATGGTAT+TGG | 0.445462 | 6.1:-3128883 | MS.gene54643:intron |
| CTACAAGATTATCAAGAAGA+AGG | 0.445823 | 6.1:-3129767 | MS.gene54643:CDS |
| TCAGTGATTCGTAACGTTGT+TGG | 0.451760 | 6.1:-3130756 | MS.gene54643:CDS |
| ACCCAAAGGTCTTTAATTGT+TGG | 0.456975 | 6.1:-3129309 | MS.gene54643:CDS |
| ACTGCAGTCGCAACTGGAGC+TGG | 0.457083 | 6.1:+3128769 | None:intergenic |
| CATGCCATTCTGGCTCTCTC+TGG | 0.459353 | 6.1:-3129099 | MS.gene54643:CDS |
| TGCTTCTCCTCTTACGATCA+TGG | 0.464189 | 6.1:-3129253 | MS.gene54643:intron |
| TATATGGCTATTACTGGTGC+AGG | 0.465242 | 6.1:-3128831 | MS.gene54643:CDS |
| AATCAGATTGATGATGATAA+GGG | 0.471988 | 6.1:-3128802 | MS.gene54643:CDS |
| GTCGCAACTGGAGCTGGACC+TGG | 0.487021 | 6.1:+3128775 | None:intergenic |
| GTCGTCACCATCAATGGTGT+TGG | 0.498613 | 6.1:-3129643 | MS.gene54643:CDS |
| CATTGATGGTGACGACCAAA+AGG | 0.503896 | 6.1:+3129650 | None:intergenic |
| CAATTAAAGACCTTTGGGTA+TGG | 0.506371 | 6.1:+3129313 | None:intergenic |
| TTACTTACCATGATCGTAAG+AGG | 0.508164 | 6.1:+3129246 | None:intergenic |
| TCCAAGAATTCCAAGAAGAA+AGG | 0.508774 | 6.1:-3129577 | MS.gene54643:CDS |
| AATAAATTACCAGAACATAA+AGG | 0.509442 | 6.1:+3129021 | None:intergenic |
| GGCTATTACTGGTGCAGGGG+AGG | 0.516094 | 6.1:-3128826 | MS.gene54643:CDS |
| GATGATGATAAGGGTGGTCC+AGG | 0.518060 | 6.1:-3128793 | MS.gene54643:CDS |
| AATGGTATTGGAGTAATCTC+TGG | 0.518369 | 6.1:-3128871 | MS.gene54643:CDS |
| TGACGACCAAAAGGCTGTTT+GGG | 0.519716 | 6.1:+3129659 | None:intergenic |
| TACCAGAACATAAAGGTCAA+AGG | 0.528400 | 6.1:+3129028 | None:intergenic |
| GGGGATTATTCTTCTCATTG+AGG | 0.533263 | 6.1:-3129385 | MS.gene54643:CDS |
| ATAACAGAGTTGGCACTACA+TGG | 0.538105 | 6.1:-3129336 | MS.gene54643:CDS |
| CATTGTTCTGATAACAGAGT+TGG | 0.552416 | 6.1:-3129346 | MS.gene54643:CDS |
| GATTATCAAGAAGAAGGATG+TGG | 0.554099 | 6.1:-3129761 | MS.gene54643:CDS |
| TCTAATTTCAGAAGTATATG+GGG | 0.558102 | 6.1:-3129404 | MS.gene54643:intron |
| TTAGCCAGAGAGAGCCAGAA+TGG | 0.559920 | 6.1:+3129095 | None:intergenic |
| AGAATTCCAAGAAGAAAGGA+AGG | 0.564362 | 6.1:-3129573 | MS.gene54643:CDS |
| TCTCTGGCTAACTTCTGCAA+TGG | 0.569392 | 6.1:-3129083 | MS.gene54643:CDS |
| CAACGTTACGAATCACTGAC+TGG | 0.576683 | 6.1:+3130760 | None:intergenic |
| ATATGGCTATTACTGGTGCA+GGG | 0.590867 | 6.1:-3128830 | MS.gene54643:CDS |
| TGAATATTGCAGATCAGCAA+TGG | 0.603008 | 6.1:-3128889 | MS.gene54643:intron |
| CACTACATGGCCATACCCAA+AGG | 0.608199 | 6.1:-3129323 | MS.gene54643:CDS |
| GAACATAAAGGTCAAAGGGG+TGG | 0.619001 | 6.1:+3129033 | None:intergenic |
| CAACTCTGTTATCAGAACAA+TGG | 0.647388 | 6.1:+3129347 | None:intergenic |
| TATGGCTATTACTGGTGCAG+GGG | 0.648799 | 6.1:-3128829 | MS.gene54643:CDS |
| ATGTTGCTAAGTATGGATCT+GGG | 0.654732 | 6.1:+3129728 | None:intergenic |
| CAGATTGATGATGATAAGGG+TGG | 0.669162 | 6.1:-3128799 | MS.gene54643:CDS |
| GAATTCCAAGAAGAAAGGAA+GGG | 0.672405 | 6.1:-3129572 | MS.gene54643:intron |
| CCAGAACATAAAGGTCAAAG+GGG | 0.687128 | 6.1:+3129030 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATTATGATTTTG+TGG | - | chr6.1:3129259-3129278 | MS.gene54643:CDS | 10.0% |
| !! | ATGATCTGAATATAAATTAA+TGG | + | chr6.1:3130321-3130340 | None:intergenic | 15.0% |
| !!! | ATAATTGTATTTAGTTCAAT+TGG | - | chr6.1:3130575-3130594 | MS.gene54643:intron | 15.0% |
| !!! | ATATCTGTGATTTTTTTTTT+TGG | - | chr6.1:3129219-3129238 | MS.gene54643:intron | 15.0% |
| !! | AATAAATTACCAGAACATAA+AGG | + | chr6.1:3130515-3130534 | None:intergenic | 20.0% |
| !!! | AAGATATTGTTTTCAACTTT+TGG | - | chr6.1:3129648-3129667 | MS.gene54643:CDS | 20.0% |
| ! | AAATATAGCTGGTATACTTA+AGG | + | chr6.1:3129339-3129358 | None:intergenic | 25.0% |
| ! | AATAAAAAAACAATGTCACG+TGG | - | chr6.1:3129415-3129434 | MS.gene54643:intron | 25.0% |
| ! | CTTGGAATAGATAAAAAAGA+TGG | + | chr6.1:3129942-3129961 | None:intergenic | 25.0% |
| ! | TAACACATCATGAACTAATT+AGG | + | chr6.1:3130026-3130045 | None:intergenic | 25.0% |
| ! | TAATTAGTTCATGATGTGTT+AGG | - | chr6.1:3130025-3130044 | MS.gene54643:intron | 25.0% |
| !! | ATTGTTGAATTGTGCATTTT+GGG | - | chr6.1:3129826-3129845 | MS.gene54643:intron | 25.0% |
| !! | CTCTAATTTCAGAAGTATAT+GGG | - | chr6.1:3130128-3130147 | MS.gene54643:intron | 25.0% |
| !! | TCTAATTTCAGAAGTATATG+GGG | - | chr6.1:3130129-3130148 | MS.gene54643:intron | 25.0% |
| !! | TCTCTAATTTCAGAAGTATA+TGG | - | chr6.1:3130127-3130146 | MS.gene54643:intron | 25.0% |
| !! | TTACGTGAATATAGTTGTTT+TGG | - | chr6.1:3129086-3129105 | MS.gene54643:CDS | 25.0% |
| !! | TTGATAATCTTGTAGAAAGT+TGG | + | chr6.1:3129761-3129780 | None:intergenic | 25.0% |
| !! | TTTTGTGAAATTTGAATGCA+GGG | - | chr6.1:3128999-3129018 | MS.gene54643:intron | 25.0% |
| !! | TTTTTGTGAAATTTGAATGC+AGG | - | chr6.1:3128998-3129017 | MS.gene54643:intron | 25.0% |
| !!! | AAATCAGATTGATGATGATA+AGG | - | chr6.1:3130730-3130749 | MS.gene54643:intron | 25.0% |
| !!! | AATCAGATTGATGATGATAA+GGG | - | chr6.1:3130731-3130750 | MS.gene54643:intron | 25.0% |
| !!! | GTGTTAACTATTGATTTGTT+TGG | - | chr6.1:3129688-3129707 | MS.gene54643:CDS | 25.0% |
| ACCAACAATTAAAGACCTTT+GGG | + | chr6.1:3130228-3130247 | None:intergenic | 30.0% | |
| ACTATTCAGCTCATACTATA+TGG | - | chr6.1:3130686-3130705 | MS.gene54643:intron | 30.0% | |
| ATCGTTGATCTAAATATAGC+TGG | + | chr6.1:3129350-3129369 | None:intergenic | 30.0% | |
| CTACAAGATTATCAAGAAGA+AGG | - | chr6.1:3129766-3129785 | MS.gene54643:CDS | 30.0% | |
| TACCAACAATTAAAGACCTT+TGG | + | chr6.1:3130229-3130248 | None:intergenic | 30.0% | |
| TCAACTAGGTAAGAGATATA+GGG | - | chr6.1:3129595-3129614 | MS.gene54643:CDS | 30.0% | |
| TCATACTATATGGCTATTAC+TGG | - | chr6.1:3130696-3130715 | MS.gene54643:intron | 30.0% | |
| TTCAACAATGTTGCTAAGTA+TGG | + | chr6.1:3129815-3129834 | None:intergenic | 30.0% | |
| TTCAACTAGGTAAGAGATAT+AGG | - | chr6.1:3129594-3129613 | MS.gene54643:CDS | 30.0% | |
| TTGACATAACCATGGTTTAT+CGG | - | chr6.1:3129374-3129393 | MS.gene54643:CDS | 30.0% | |
| ! | ACTTGTTACATATGATGAAC+AGG | - | chr6.1:3130380-3130399 | MS.gene54643:intron | 30.0% |
| ! | CATTGTTGAATTGTGCATTT+TGG | - | chr6.1:3129825-3129844 | MS.gene54643:intron | 30.0% |
| ! | TTGTTTTCAACTTTTGGCAT+TGG | - | chr6.1:3129654-3129673 | MS.gene54643:CDS | 30.0% |
| !! | CACACTCTTGGTTTTTATAA+CGG | + | chr6.1:3130409-3130428 | None:intergenic | 30.0% |
| !!! | TGCACTATTAGTTTTCAACT+AGG | - | chr6.1:3129581-3129600 | MS.gene54643:CDS | 30.0% |
| AATGTTGCTAAGTATGGATC+TGG | + | chr6.1:3129809-3129828 | None:intergenic | 35.0% | |
| ACAAGTCACAGCAATACTAT+AGG | + | chr6.1:3130549-3130568 | None:intergenic | 35.0% | |
| ACCAGAACATAAAGGTCAAA+GGG | + | chr6.1:3130507-3130526 | None:intergenic | 35.0% | |
| ACCCAAAGGTCTTTAATTGT+TGG | - | chr6.1:3130224-3130243 | MS.gene54643:intron | 35.0% | |
| AGAATTCCAAGAAGAAAGGA+AGG | - | chr6.1:3129960-3129979 | MS.gene54643:intron | 35.0% | |
| ATGTTGCTAAGTATGGATCT+GGG | + | chr6.1:3129808-3129827 | None:intergenic | 35.0% | |
| CAACTCTGTTATCAGAACAA+TGG | + | chr6.1:3130189-3130208 | None:intergenic | 35.0% | |
| CAATTAAAGACCTTTGGGTA+TGG | + | chr6.1:3130223-3130242 | None:intergenic | 35.0% | |
| CATTGTTCTGATAACAGAGT+TGG | - | chr6.1:3130187-3130206 | MS.gene54643:intron | 35.0% | |
| GAATTCCAAGAAGAAAGGAA+GGG | - | chr6.1:3129961-3129980 | MS.gene54643:intron | 35.0% | |
| GAGAGTTTAATTAGTTACGC+TGG | + | chr6.1:3129055-3129074 | None:intergenic | 35.0% | |
| GATTATCAAGAAGAAGGATG+TGG | - | chr6.1:3129772-3129791 | MS.gene54643:CDS | 35.0% | |
| TACCAGAACATAAAGGTCAA+AGG | + | chr6.1:3130508-3130527 | None:intergenic | 35.0% | |
| TCCAAGAATTCCAAGAAGAA+AGG | - | chr6.1:3129956-3129975 | MS.gene54643:intron | 35.0% | |
| TCCTTTCTTCTTGGAATTCT+TGG | + | chr6.1:3129960-3129979 | None:intergenic | 35.0% | |
| TGAATATTGCAGATCAGCAA+TGG | - | chr6.1:3130644-3130663 | MS.gene54643:intron | 35.0% | |
| TTACTTACCATGATCGTAAG+AGG | + | chr6.1:3130290-3130309 | None:intergenic | 35.0% | |
| TTGTTTGGCACTTCAACTTA+AGG | - | chr6.1:3129703-3129722 | MS.gene54643:CDS | 35.0% | |
| ! | AATGGTATTGGAGTAATCTC+TGG | - | chr6.1:3130662-3130681 | MS.gene54643:intron | 35.0% |
| !! | TGTGCATTTTGGGTATTCTA+TGG | - | chr6.1:3129836-3129855 | MS.gene54643:intron | 35.0% |
| AAAAGACGACCGATAAACCA+TGG | + | chr6.1:3129386-3129405 | None:intergenic | 40.0% | |
| AACAAGTCCAACACCATTGA+TGG | + | chr6.1:3129900-3129919 | None:intergenic | 40.0% | |
| ATAACAGAGTTGGCACTACA+TGG | - | chr6.1:3130197-3130216 | MS.gene54643:intron | 40.0% | |
| ATATGGCTATTACTGGTGCA+GGG | - | chr6.1:3130703-3130722 | MS.gene54643:intron | 40.0% | |
| CCAGAACATAAAGGTCAAAG+GGG | + | chr6.1:3130506-3130525 | None:intergenic | 40.0% | |
| CGATGAGTTTGACATAACCA+TGG | - | chr6.1:3129366-3129385 | MS.gene54643:CDS | 40.0% | |
| CGTAACGTTGTTGGTATCAT+AGG | - | chr6.1:3128786-3128805 | MS.gene54643:CDS | 40.0% | |
| GGGGATTATTCTTCTCATTG+AGG | - | chr6.1:3130148-3130167 | MS.gene54643:intron | 40.0% | |
| GTGTGAAATACATGCCATTC+TGG | - | chr6.1:3130424-3130443 | MS.gene54643:intron | 40.0% | |
| TATATGGCTATTACTGGTGC+AGG | - | chr6.1:3130702-3130721 | MS.gene54643:intron | 40.0% | |
| TCAGTGATTCGTAACGTTGT+TGG | - | chr6.1:3128777-3128796 | MS.gene54643:CDS | 40.0% | |
| TGGCATGTATTTCACACTCT+TGG | + | chr6.1:3130421-3130440 | None:intergenic | 40.0% | |
| TTGCAGATCAGCAATGGTAT+TGG | - | chr6.1:3130650-3130669 | MS.gene54643:intron | 40.0% | |
| !! | CAGATTGATGATGATAAGGG+TGG | - | chr6.1:3130734-3130753 | MS.gene54643:intron | 40.0% |
| CAACGTTACGAATCACTGAC+TGG | + | chr6.1:3128776-3128795 | None:intergenic | 45.0% | |
| CCCCTTTGACCTTTATGTTC+TGG | - | chr6.1:3130503-3130522 | MS.gene54643:CDS | 45.0% | |
| GAACATAAAGGTCAAAGGGG+TGG | + | chr6.1:3130503-3130522 | None:intergenic | 45.0% | |
| TATGGCTATTACTGGTGCAG+GGG | - | chr6.1:3130704-3130723 | MS.gene54643:intron | 45.0% | |
| TCTCTGGCTAACTTCTGCAA+TGG | - | chr6.1:3130450-3130469 | MS.gene54643:intron | 45.0% | |
| TGACGACCAAAAGGCTGTTT+GGG | + | chr6.1:3129877-3129896 | None:intergenic | 45.0% | |
| TGCTTCTCCTCTTACGATCA+TGG | - | chr6.1:3130280-3130299 | MS.gene54643:intron | 45.0% | |
| ! | ACTTCTGCAATGGACTTTGC+TGG | - | chr6.1:3130460-3130479 | MS.gene54643:intron | 45.0% |
| ! | CTTTTGGTCGTCACCATCAA+TGG | - | chr6.1:3129884-3129903 | MS.gene54643:intron | 45.0% |
| !! | CATTGATGGTGACGACCAAA+AGG | + | chr6.1:3129886-3129905 | None:intergenic | 45.0% |
| !! | AAAATGTATATTAATTAATA+TGG | + | chr6.1:3130621-3130640 | None:intergenic | 5.0% |
| !! | AAATGTATATTAATTAATAT+GGG | + | chr6.1:3130620-3130639 | None:intergenic | 5.0% |
| ACGCACCCTTCCTTTCTTCT+TGG | + | chr6.1:3129969-3129988 | None:intergenic | 50.0% | |
| AGGCTGTTTGGGTGCACAAA+AGG | + | chr6.1:3129866-3129885 | None:intergenic | 50.0% | |
| CACTACATGGCCATACCCAA+AGG | - | chr6.1:3130210-3130229 | MS.gene54643:intron | 50.0% | |
| GATGATGATAAGGGTGGTCC+AGG | - | chr6.1:3130740-3130759 | MS.gene54643:intron | 50.0% | |
| GTCGTCACCATCAATGGTGT+TGG | - | chr6.1:3129890-3129909 | MS.gene54643:intron | 50.0% | |
| GTGACGACCAAAAGGCTGTT+TGG | + | chr6.1:3129878-3129897 | None:intergenic | 50.0% | |
| TTAGCCAGAGAGAGCCAGAA+TGG | + | chr6.1:3130441-3130460 | None:intergenic | 50.0% | |
| ! | TGTGCACCCAAACAGCCTTT+TGG | - | chr6.1:3129868-3129887 | MS.gene54643:intron | 50.0% |
| !! | CATGCCATTCTGGCTCTCTC+TGG | - | chr6.1:3130434-3130453 | MS.gene54643:intron | 55.0% |
| ACTGCAGTCGCAACTGGAGC+TGG | + | chr6.1:3130767-3130786 | None:intergenic | 60.0% | |
| GGCTATTACTGGTGCAGGGG+AGG | - | chr6.1:3130707-3130726 | MS.gene54643:intron | 60.0% | |
| GTCGCAACTGGAGCTGGACC+TGG | + | chr6.1:3130761-3130780 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3128765 | 3130790 | 3128765 | ID=MS.gene54643 |
| chr6.1 | mRNA | 3128765 | 3130790 | 3128765 | ID=MS.gene54643.t1;Parent=MS.gene54643 |
| chr6.1 | exon | 3130748 | 3130790 | 3130748 | ID=MS.gene54643.t1.exon1;Parent=MS.gene54643.t1 |
| chr6.1 | CDS | 3130748 | 3130790 | 3130748 | ID=cds.MS.gene54643.t1;Parent=MS.gene54643.t1 |
| chr6.1 | exon | 3130499 | 3130535 | 3130499 | ID=MS.gene54643.t1.exon2;Parent=MS.gene54643.t1 |
| chr6.1 | CDS | 3130499 | 3130535 | 3130499 | ID=cds.MS.gene54643.t1;Parent=MS.gene54643.t1 |
| chr6.1 | exon | 3129573 | 3129798 | 3129573 | ID=MS.gene54643.t1.exon3;Parent=MS.gene54643.t1 |
| chr6.1 | CDS | 3129573 | 3129798 | 3129573 | ID=cds.MS.gene54643.t1;Parent=MS.gene54643.t1 |
| chr6.1 | exon | 3129254 | 3129415 | 3129254 | ID=MS.gene54643.t1.exon4;Parent=MS.gene54643.t1 |
| chr6.1 | CDS | 3129254 | 3129415 | 3129254 | ID=cds.MS.gene54643.t1;Parent=MS.gene54643.t1 |
| chr6.1 | exon | 3129031 | 3129153 | 3129031 | ID=MS.gene54643.t1.exon5;Parent=MS.gene54643.t1 |
| chr6.1 | CDS | 3129031 | 3129153 | 3129031 | ID=cds.MS.gene54643.t1;Parent=MS.gene54643.t1 |
| chr6.1 | exon | 3128765 | 3128899 | 3128765 | ID=MS.gene54643.t1.exon6;Parent=MS.gene54643.t1 |
| chr6.1 | CDS | 3128765 | 3128899 | 3128765 | ID=cds.MS.gene54643.t1;Parent=MS.gene54643.t1 |
| Gene Sequence |
| Protein sequence |
