Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54644.t1 | XP_013450821.1 | 96.4 | 248 | 7 | 1 | 1 | 246 | 1 | 248 | 1.00E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54644.t1 | A2YZ24 | 57.8 | 223 | 93 | 1 | 2 | 224 | 1 | 222 | 2.2e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54644.t1 | A0A072U6A4 | 96.4 | 248 | 7 | 1 | 1 | 246 | 1 | 248 | 7.4e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90281 | MS.gene54644 | PPI |
| MS.gene54644 | MS.gene81949 | PPI |
| MS.gene54644 | MS.gene009331 | PPI |
| MS.gene54644 | MS.gene25769 | PPI |
| MS.gene54644 | MS.gene52346 | PPI |
| MS.gene54644 | MS.gene02646 | PPI |
| MS.gene54644 | MS.gene02493 | PPI |
| MS.gene55828 | MS.gene54644 | PPI |
| MS.gene54644 | MS.gene026679 | PPI |
| MS.gene54644 | MS.gene93151 | PPI |
| MS.gene54644 | MS.gene31850 | PPI |
| MS.gene54644 | MS.gene044269 | PPI |
| MS.gene69746 | MS.gene54644 | PPI |
| MS.gene54644 | MS.gene70529 | PPI |
| MS.gene54644 | MS.gene46188 | PPI |
| MS.gene54644 | MS.gene048962 | PPI |
| MS.gene013686 | MS.gene54644 | PPI |
| MS.gene54644 | MS.gene009329 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54644.t1 | MTR_6g007637 | 96.371 | 248 | 7 | 1 | 1 | 246 | 1 | 248 | 1.45e-175 | 483 |
| MS.gene54644.t1 | MTR_6g007633 | 80.349 | 229 | 41 | 2 | 2 | 227 | 1 | 228 | 2.05e-133 | 375 |
| MS.gene54644.t1 | MTR_6g007623 | 75.342 | 219 | 53 | 1 | 9 | 227 | 5 | 222 | 1.80e-120 | 343 |
| MS.gene54644.t1 | MTR_6g007610 | 57.021 | 235 | 85 | 3 | 2 | 225 | 1 | 230 | 1.29e-85 | 254 |
| MS.gene54644.t1 | MTR_8g099730 | 51.415 | 212 | 102 | 1 | 5 | 216 | 14 | 224 | 6.90e-77 | 233 |
| MS.gene54644.t1 | MTR_3g080990 | 50.427 | 234 | 109 | 2 | 4 | 231 | 3 | 235 | 2.90e-75 | 229 |
| MS.gene54644.t1 | MTR_4g106990 | 55.051 | 198 | 87 | 2 | 29 | 226 | 35 | 230 | 2.71e-70 | 216 |
| MS.gene54644.t1 | MTR_8g099730 | 48.428 | 159 | 81 | 1 | 58 | 216 | 3 | 160 | 9.05e-52 | 167 |
| MS.gene54644.t1 | MTR_3g089125 | 40.889 | 225 | 129 | 4 | 6 | 229 | 2 | 223 | 6.23e-49 | 161 |
| MS.gene54644.t1 | MTR_1g029380 | 39.669 | 242 | 137 | 3 | 7 | 241 | 3 | 242 | 8.81e-49 | 161 |
| MS.gene54644.t1 | MTR_2g073190 | 40.529 | 227 | 131 | 3 | 6 | 231 | 11 | 234 | 5.25e-47 | 165 |
| MS.gene54644.t1 | MTR_8g042490 | 37.500 | 224 | 134 | 4 | 5 | 227 | 10 | 228 | 7.38e-47 | 155 |
| MS.gene54644.t1 | MTR_2g436310 | 42.922 | 219 | 120 | 4 | 12 | 229 | 8 | 222 | 9.66e-46 | 153 |
| MS.gene54644.t1 | MTR_8g096320 | 39.815 | 216 | 126 | 3 | 1 | 215 | 1 | 213 | 2.77e-44 | 150 |
| MS.gene54644.t1 | MTR_5g067530 | 39.286 | 224 | 124 | 6 | 11 | 232 | 12 | 225 | 4.10e-44 | 149 |
| MS.gene54644.t1 | MTR_1g028460 | 38.428 | 229 | 136 | 3 | 5 | 230 | 2 | 228 | 3.80e-42 | 144 |
| MS.gene54644.t1 | MTR_5g092600 | 38.117 | 223 | 132 | 5 | 13 | 234 | 14 | 231 | 2.03e-41 | 142 |
| MS.gene54644.t1 | MTR_3g098910 | 38.028 | 213 | 128 | 3 | 13 | 224 | 13 | 222 | 2.52e-40 | 141 |
| MS.gene54644.t1 | MTR_7g007490 | 36.530 | 219 | 136 | 2 | 11 | 229 | 12 | 227 | 4.67e-40 | 139 |
| MS.gene54644.t1 | MTR_7g405710 | 41.395 | 215 | 115 | 6 | 13 | 224 | 13 | 219 | 1.90e-38 | 135 |
| MS.gene54644.t1 | MTR_3g090940 | 35.556 | 225 | 139 | 4 | 9 | 229 | 6 | 228 | 3.26e-38 | 134 |
| MS.gene54644.t1 | MTR_8g096310 | 34.404 | 218 | 135 | 4 | 11 | 225 | 11 | 223 | 3.94e-37 | 132 |
| MS.gene54644.t1 | MTR_3g090950 | 36.444 | 225 | 137 | 4 | 9 | 229 | 6 | 228 | 4.11e-37 | 131 |
| MS.gene54644.t1 | MTR_2g007890 | 33.645 | 214 | 136 | 4 | 13 | 225 | 16 | 224 | 4.83e-37 | 132 |
| MS.gene54644.t1 | MTR_3g098930 | 41.573 | 178 | 100 | 3 | 11 | 187 | 12 | 186 | 2.19e-34 | 122 |
| MS.gene54644.t1 | MTR_7g405730 | 38.863 | 211 | 118 | 6 | 13 | 220 | 13 | 215 | 2.99e-34 | 124 |
| MS.gene54644.t1 | MTR_8g096320 | 37.736 | 159 | 95 | 3 | 58 | 215 | 3 | 158 | 5.69e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54644.t1 | AT5G62850 | 55.804 | 224 | 98 | 1 | 8 | 231 | 7 | 229 | 8.21e-92 | 270 |
| MS.gene54644.t1 | AT5G62850 | 57.513 | 193 | 81 | 1 | 8 | 200 | 7 | 198 | 2.23e-78 | 235 |
| MS.gene54644.t1 | AT4G10850 | 50.877 | 228 | 108 | 3 | 6 | 232 | 7 | 231 | 1.35e-77 | 235 |
| MS.gene54644.t1 | AT3G28007 | 56.744 | 215 | 92 | 1 | 2 | 216 | 1 | 214 | 1.88e-75 | 229 |
| MS.gene54644.t1 | AT5G40260 | 49.180 | 244 | 116 | 3 | 2 | 243 | 1 | 238 | 1.29e-73 | 224 |
| MS.gene54644.t1 | AT1G66770 | 45.982 | 224 | 118 | 3 | 6 | 227 | 7 | 229 | 7.54e-68 | 210 |
| MS.gene54644.t1 | AT5G40260 | 52.239 | 201 | 94 | 1 | 2 | 200 | 1 | 201 | 2.67e-66 | 204 |
| MS.gene54644.t1 | AT1G21460 | 41.736 | 242 | 134 | 3 | 7 | 243 | 3 | 242 | 3.21e-54 | 175 |
| MS.gene54644.t1 | AT4G15920 | 40.693 | 231 | 133 | 3 | 12 | 241 | 8 | 235 | 2.04e-52 | 170 |
| MS.gene54644.t1 | AT3G16690 | 39.381 | 226 | 126 | 6 | 12 | 232 | 8 | 227 | 4.22e-47 | 156 |
| MS.gene54644.t1 | AT3G16690 | 39.381 | 226 | 126 | 6 | 12 | 232 | 43 | 262 | 5.98e-47 | 157 |
| MS.gene54644.t1 | AT5G13170 | 35.443 | 237 | 141 | 5 | 11 | 238 | 13 | 246 | 7.43e-45 | 152 |
| MS.gene54644.t1 | AT3G14770 | 36.486 | 222 | 138 | 3 | 6 | 227 | 11 | 229 | 8.95e-44 | 148 |
| MS.gene54644.t1 | AT1G21460 | 44.560 | 193 | 103 | 4 | 6 | 197 | 2 | 191 | 1.47e-43 | 146 |
| MS.gene54644.t1 | AT5G23660 | 40.435 | 230 | 131 | 5 | 11 | 239 | 13 | 237 | 2.37e-42 | 145 |
| MS.gene54644.t1 | AT3G48740 | 37.826 | 230 | 137 | 5 | 11 | 239 | 13 | 237 | 2.70e-40 | 140 |
| MS.gene54644.t1 | AT2G39060 | 37.559 | 213 | 127 | 3 | 13 | 225 | 13 | 219 | 6.53e-40 | 139 |
| MS.gene54644.t1 | AT4G25010 | 38.889 | 216 | 128 | 4 | 1 | 215 | 1 | 213 | 1.42e-39 | 138 |
| MS.gene54644.t1 | AT5G50800 | 38.967 | 213 | 126 | 4 | 1 | 212 | 1 | 210 | 1.33e-38 | 136 |
| MS.gene54644.t1 | AT5G50790 | 32.068 | 237 | 149 | 5 | 1 | 236 | 1 | 226 | 2.31e-37 | 133 |
| MS.gene54644.t1 | AT5G53190 | 37.089 | 213 | 131 | 3 | 9 | 219 | 6 | 217 | 4.55e-37 | 131 |
| MS.gene54644.t1 | AT3G16690 | 32.642 | 193 | 121 | 4 | 12 | 203 | 8 | 192 | 2.99e-24 | 96.3 |
Find 48 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTTGAATTGTGCATTT+TGG | 0.161861 | 6.1:-3136719 | MS.gene54644:CDS |
| AACAACGTTACGAGCTAATT+TGG | 0.207761 | 6.1:+3139479 | None:intergenic |
| TATTGCAGTCCAACTTTCTA+TGG | 0.237151 | 6.1:-3136795 | MS.gene54644:intron |
| TTCAACAATGTTGCTAAGTA+TGG | 0.264358 | 6.1:+3136732 | None:intergenic |
| GTGTGAAATACATGCCATTT+TGG | 0.268851 | 6.1:-3135705 | MS.gene54644:CDS |
| TACACTTACCCGTCCACTTT+TGG | 0.294861 | 6.1:+3136584 | None:intergenic |
| GCAGGCAATGTCATCTCTTT+CGG | 0.309432 | 6.1:-3139296 | MS.gene54644:intron |
| CGTAACGTTGTTGGTGTCAT+AGG | 0.335338 | 6.1:-3139468 | MS.gene54644:intron |
| TGCTGTAGCTCTTCCATTTG+AGG | 0.361218 | 6.1:+3135179 | None:intergenic |
| CCCATTGGATATTTATGTCT+TGG | 0.373053 | 6.1:-3135626 | MS.gene54644:intron |
| TTTATAATTCCATAGAAAGT+TGG | 0.392063 | 6.1:+3136786 | None:intergenic |
| ATAACAATGTTGGCACTTCA+TGG | 0.396737 | 6.1:-3135932 | MS.gene54644:CDS |
| GAGAGAACTAGAGTGCTGTT+TGG | 0.402304 | 6.1:+3136669 | None:intergenic |
| TTCATCTATGCCACCAAAAG+TGG | 0.402476 | 6.1:-3136597 | MS.gene54644:CDS |
| AGAGAACTAGAGTGCTGTTT+GGG | 0.404951 | 6.1:+3136670 | None:intergenic |
| AATGGTATAGGAGTGGTTTC+TGG | 0.406967 | 6.1:-3135303 | MS.gene54644:CDS |
| AAATTAGCTCGTAACGTTGT+TGG | 0.417957 | 6.1:-3139477 | MS.gene54644:CDS |
| AGATTTACCATGATTGTAAG+AGG | 0.418167 | 6.1:+3135842 | None:intergenic |
| GTGCTGTTTGGGTGCACAAA+AGG | 0.430396 | 6.1:+3136681 | None:intergenic |
| TGGCATGTATTTCACACTCT+TGG | 0.431195 | 6.1:+3135711 | None:intergenic |
| TAGTGTTGGAGTTCTCTTTG+AGG | 0.434333 | 6.1:-3136640 | MS.gene54644:CDS |
| AATGTTGCTAAGTATGGATC+TGG | 0.448585 | 6.1:+3136738 | None:intergenic |
| CTATGGAATTATAAAGAAGA+AGG | 0.456171 | 6.1:-3136778 | MS.gene54644:CDS |
| TTGGTTAGAGAGAGCCAAAA+TGG | 0.471710 | 6.1:+3135691 | None:intergenic |
| TGCATCTCCTCTTACAATCA+TGG | 0.478610 | 6.1:-3135849 | MS.gene54644:intron |
| TCTCTAACCAACTTCCTCAA+TGG | 0.479863 | 6.1:-3135679 | MS.gene54644:CDS |
| TTGTAGGTAAGCAATGGTAT+AGG | 0.485041 | 6.1:-3135315 | MS.gene54644:intron |
| GTTCGTGAGATCTCCTCAAA+TGG | 0.489888 | 6.1:-3135192 | MS.gene54644:CDS |
| ACTTCCTCAATGGTTTGTGC+TGG | 0.494981 | 6.1:-3135669 | MS.gene54644:CDS |
| GTTGCTTTATCTTCTCATTG+AGG | 0.505564 | 6.1:-3135981 | MS.gene54644:CDS |
| GCACAAACCATTGAGGAAGT+TGG | 0.509786 | 6.1:+3135672 | None:intergenic |
| CCAAGACATAAATATCCAAT+GGG | 0.522676 | 6.1:+3135626 | None:intergenic |
| CATTGTTCTAATAACAATGT+TGG | 0.525508 | 6.1:-3135942 | MS.gene54644:CDS |
| ACCAAGACATAAATATCCAA+TGG | 0.531120 | 6.1:+3135625 | None:intergenic |
| ATATGCTCTCATCCACCCAT+TGG | 0.548993 | 6.1:-3135641 | MS.gene54644:CDS |
| GTTCTCTCTATCAATAGTGT+TGG | 0.558531 | 6.1:-3136654 | MS.gene54644:CDS |
| AATTATAAAGAAGAAGGCTG+TGG | 0.576708 | 6.1:-3136772 | MS.gene54644:CDS |
| CAACATTGTTATTAGAACAA+TGG | 0.588246 | 6.1:+3135943 | None:intergenic |
| CTATGCCACCAAAAGTGGAC+GGG | 0.592462 | 6.1:-3136592 | MS.gene54644:intron |
| GCTTGCTATTTCTCTCGCAA+AGG | 0.597169 | 6.1:-3135258 | MS.gene54644:CDS |
| GAGATCTCACGAACTCCAGT+TGG | 0.600401 | 6.1:+3135201 | None:intergenic |
| ATATTCTTGTAGGTAAGCAA+TGG | 0.607146 | 6.1:-3135321 | MS.gene54644:intron |
| TTGTCCAGCACAAACCATTG+AGG | 0.622221 | 6.1:+3135665 | None:intergenic |
| AGACATAAATATCCAATGGG+TGG | 0.624220 | 6.1:+3135629 | None:intergenic |
| TCTATGCCACCAAAAGTGGA+CGG | 0.627429 | 6.1:-3136593 | MS.gene54644:CDS |
| AAAGGTGAAAACGATGATGA+TGG | 0.634633 | 6.1:-3135240 | MS.gene54644:CDS |
| GGTAAGCAATGGTATAGGAG+TGG | 0.640630 | 6.1:-3135310 | MS.gene54644:CDS |
| CATTGTTATTAGAACAATGG+CGG | 0.640689 | 6.1:+3135946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTATTTATTTAAGT+AGG | + | chr6.1:3139311-3139330 | None:intergenic | 10.0% |
| !! | AGAAATAAAAAAAAAAAACA+TGG | + | chr6.1:3135247-3135266 | None:intergenic | 10.0% |
| !! | TTTGTTTAATTCAAATTTAT+TGG | + | chr6.1:3137726-3137745 | None:intergenic | 10.0% |
| !!! | ATAATTGTTTTAATAACTTT+AGG | + | chr6.1:3137347-3137366 | None:intergenic | 10.0% |
| !!! | TAAATTATTTTTTATTTACC+TGG | + | chr6.1:3136766-3136785 | None:intergenic | 10.0% |
| !! | CTTGAAAATAAAAATGAAAT+GGG | + | chr6.1:3135481-3135500 | None:intergenic | 15.0% |
| !! | GAGATATATGTAATTAAAAT+AGG | + | chr6.1:3138901-3138920 | None:intergenic | 15.0% |
| !! | GTTTAATAGATATAATCTAA+TGG | + | chr6.1:3135802-3135821 | None:intergenic | 15.0% |
| !! | TAGAAAATTGAATTATCAAT+GGG | - | chr6.1:3139129-3139148 | MS.gene54644:intron | 15.0% |
| !! | TAGTAGTATATGAAATAAAA+GGG | + | chr6.1:3139111-3139130 | None:intergenic | 15.0% |
| !! | TATACAAATTTAAATGATCA+TGG | + | chr6.1:3138861-3138880 | None:intergenic | 15.0% |
| !! | TATTTGCTTGTAAAAAAAAT+TGG | - | chr6.1:3137621-3137640 | MS.gene54644:intron | 15.0% |
| !! | TCTTGAAAATAAAAATGAAA+TGG | + | chr6.1:3135482-3135501 | None:intergenic | 15.0% |
| !! | TTTAATATCATTACTCAAAA+TGG | + | chr6.1:3138355-3138374 | None:intergenic | 15.0% |
| !!! | AATATGTTGAATTTTTTTGA+AGG | + | chr6.1:3136548-3136567 | None:intergenic | 15.0% |
| !!! | ATACCTAAATAATTTTGATT+TGG | + | chr6.1:3138221-3138240 | None:intergenic | 15.0% |
| !!! | ATAGATAAAGTACTTTTTTT+AGG | + | chr6.1:3137534-3137553 | None:intergenic | 15.0% |
| !!! | ATTAACGTTTTTTATTTGAT+TGG | - | chr6.1:3136259-3136278 | MS.gene54644:intron | 15.0% |
| !!! | TAAAAAAAATTGGTAATAGA+TGG | - | chr6.1:3137631-3137650 | MS.gene54644:intron | 15.0% |
| !!! | TAAGCAAAAATTTACTTTTT+AGG | + | chr6.1:3137052-3137071 | None:intergenic | 15.0% |
| !!! | TAAGTAAAAATTCACTTTTT+AGG | - | chr6.1:3136963-3136982 | MS.gene54644:intron | 15.0% |
| !!! | TACCTAAATAATTTTGATTT+GGG | + | chr6.1:3138220-3138239 | None:intergenic | 15.0% |
| !!! | TCAATTTAAAGTCAAAATTT+TGG | - | chr6.1:3138438-3138457 | MS.gene54644:intron | 15.0% |
| !!! | TCTATTTGTTAATCTTAAAA+TGG | + | chr6.1:3136190-3136209 | None:intergenic | 15.0% |
| !!! | TTTAAAATTAGATATTTGGA+TGG | + | chr6.1:3136465-3136484 | None:intergenic | 15.0% |
| !! | AAAAAAAGATCGTTAATTGT+TGG | - | chr6.1:3138763-3138782 | MS.gene54644:intron | 20.0% |
| !! | ATAAAGTGCATTATAAATCA+CGG | + | chr6.1:3137503-3137522 | None:intergenic | 20.0% |
| !! | ATGAAACATATTTCATCAAT+AGG | - | chr6.1:3135501-3135520 | MS.gene54644:intron | 20.0% |
| !! | ATTAACAAATAGAAAATCAG+CGG | - | chr6.1:3136197-3136216 | MS.gene54644:intron | 20.0% |
| !! | CTAACATTTAATAATTGAAC+TGG | - | chr6.1:3136733-3136752 | MS.gene54644:CDS | 20.0% |
| !! | CTAGAAAATTGAATTATCAA+TGG | - | chr6.1:3139128-3139147 | MS.gene54644:intron | 20.0% |
| !! | CTAGTAGTATATGAAATAAA+AGG | + | chr6.1:3139112-3139131 | None:intergenic | 20.0% |
| !! | GTTAATCATGTTTAAAAATG+TGG | - | chr6.1:3138389-3138408 | MS.gene54644:intron | 20.0% |
| !! | TAAGTTGTTGTGATTAATTT+CGG | - | chr6.1:3135683-3135702 | MS.gene54644:CDS | 20.0% |
| !! | TCAAAAAGGATTATTACTAT+TGG | - | chr6.1:3136842-3136861 | MS.gene54644:intron | 20.0% |
| !! | TTCATAGTCATATGATTAAA+TGG | - | chr6.1:3138157-3138176 | MS.gene54644:intron | 20.0% |
| !! | TTTATAATTCCATAGAAAGT+TGG | + | chr6.1:3137885-3137904 | None:intergenic | 20.0% |
| !!! | AAATAAAAATGAAATGGGTT+TGG | + | chr6.1:3135476-3135495 | None:intergenic | 20.0% |
| !!! | AACAAAAGTGGATTAAATTT+TGG | - | chr6.1:3136612-3136631 | MS.gene54644:CDS | 20.0% |
| !!! | AACGATTAGTTACATAATAT+AGG | + | chr6.1:3138638-3138657 | None:intergenic | 20.0% |
| !!! | AAGATCGTATATTTTGAAAT+TGG | - | chr6.1:3137408-3137427 | MS.gene54644:intron | 20.0% |
| !!! | AATCTTTTTATTGTGAACTT+AGG | - | chr6.1:3137444-3137463 | MS.gene54644:intron | 20.0% |
| !!! | ACAAATCTATATGACATTTT+TGG | + | chr6.1:3139280-3139299 | None:intergenic | 20.0% |
| !!! | ACCTAAATAATTTTGATTTG+GGG | + | chr6.1:3138219-3138238 | None:intergenic | 20.0% |
| !!! | ACTTATTCTAAAGTTTTTTG+AGG | - | chr6.1:3137310-3137329 | MS.gene54644:intron | 20.0% |
| !!! | ATTAAATGGATTGAAAGTAT+AGG | - | chr6.1:3138171-3138190 | MS.gene54644:intron | 20.0% |
| !!! | ATTTGTTAATCTTAAAATGG+TGG | + | chr6.1:3136187-3136206 | None:intergenic | 20.0% |
| !!! | GATTATTTTGACTTTTTGAA+TGG | + | chr6.1:3136438-3136457 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTTTCAGTTATTT+TGG | - | chr6.1:3135873-3135892 | MS.gene54644:CDS | 20.0% |
| !!! | TATAGGGTCAATTTTTATTT+GGG | - | chr6.1:3138188-3138207 | MS.gene54644:intron | 20.0% |
| !!! | TGGTTTACTATAGATTTTAA+TGG | - | chr6.1:3135897-3135916 | MS.gene54644:CDS | 20.0% |
| !!! | TTAAATGGATTGAAAGTATA+GGG | - | chr6.1:3138172-3138191 | MS.gene54644:intron | 20.0% |
| !!! | TTTTTACTTATATTTGTGAC+CGG | + | chr6.1:3136953-3136972 | None:intergenic | 20.0% |
| ! | AAAAGGATTATTACTATTGG+AGG | - | chr6.1:3136845-3136864 | MS.gene54644:intron | 25.0% |
| ! | AAAGGATTATTACTATTGGA+GGG | - | chr6.1:3136846-3136865 | MS.gene54644:intron | 25.0% |
| ! | AAATAATAAAATACACCCTC+CGG | + | chr6.1:3137084-3137103 | None:intergenic | 25.0% |
| ! | AAATCATTGTCAATCATATG+TGG | + | chr6.1:3138473-3138492 | None:intergenic | 25.0% |
| ! | AAATGTCATATAGATTTGTC+AGG | - | chr6.1:3139281-3139300 | MS.gene54644:CDS | 25.0% |
| ! | AACATATTTCATCAATAGGT+CGG | - | chr6.1:3135505-3135524 | MS.gene54644:intron | 25.0% |
| ! | ACCCCAAATCAAAATTATTT+AGG | - | chr6.1:3138215-3138234 | MS.gene54644:intron | 25.0% |
| ! | AGTCTACATACATCATTTAT+TGG | + | chr6.1:3136994-3137013 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr6.1:3137027-3137046 | None:intergenic | 25.0% |
| ! | CATTGTTCTAATAACAATGT+TGG | - | chr6.1:3138726-3138745 | MS.gene54644:intron | 25.0% |
| ! | CTATGGAATTATAAAGAAGA+AGG | - | chr6.1:3137890-3137909 | MS.gene54644:intron | 25.0% |
| ! | GATGGATGTGATATATTTAT+TGG | - | chr6.1:3137649-3137668 | MS.gene54644:intron | 25.0% |
| ! | TAAAGTGCATTATAAATCAC+GGG | + | chr6.1:3137502-3137521 | None:intergenic | 25.0% |
| ! | TAGGAACACAAAAATGTTTA+TGG | + | chr6.1:3138619-3138638 | None:intergenic | 25.0% |
| ! | TAGGTAAATGAATGAATGAA+TGG | - | chr6.1:3137837-3137856 | MS.gene54644:intron | 25.0% |
| ! | TATGATTGTTTATCACTTCT+AGG | - | chr6.1:3137818-3137837 | MS.gene54644:intron | 25.0% |
| ! | TCTTGATGTATATAATGAAC+AGG | - | chr6.1:3138919-3138938 | MS.gene54644:intron | 25.0% |
| ! | TTCATTTAACTAAACATGTC+AGG | - | chr6.1:3139245-3139264 | MS.gene54644:intron | 25.0% |
| ! | TTTGTGCATTATATTCTTGT+AGG | - | chr6.1:3139337-3139356 | MS.gene54644:intron | 25.0% |
| !! | AATAGTGTTTAACTTCTACA+TGG | - | chr6.1:3135758-3135777 | MS.gene54644:intron | 25.0% |
| !! | ACTTATATTTGAGATCGAAA+GGG | - | chr6.1:3136668-3136687 | MS.gene54644:CDS | 25.0% |
| !! | ATCAGTCAACAAAATACTTT+TGG | - | chr6.1:3136887-3136906 | MS.gene54644:intron | 25.0% |
| !! | ATTGTTGAATTGTGCATTTT+GGG | - | chr6.1:3137950-3137969 | MS.gene54644:intron | 25.0% |
| !! | ATTTTACAGTTTACTAGCTA+CGG | - | chr6.1:3136565-3136584 | MS.gene54644:intron | 25.0% |
| !! | CAACATTGTTATTAGAACAA+TGG | + | chr6.1:3138728-3138747 | None:intergenic | 25.0% |
| !! | GTATAGGGTCAATTTTTATT+TGG | - | chr6.1:3138187-3138206 | MS.gene54644:intron | 25.0% |
| !! | GTGCTCTATAATTTTCAAAA+AGG | - | chr6.1:3136828-3136847 | MS.gene54644:intron | 25.0% |
| !! | TACTTATATTTGAGATCGAA+AGG | - | chr6.1:3136667-3136686 | MS.gene54644:CDS | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | - | chr6.1:3137062-3137081 | MS.gene54644:intron | 25.0% |
| !!! | AATCTATATGACATTTTTGG+TGG | + | chr6.1:3139277-3139296 | None:intergenic | 25.0% |
| !!! | AGTACTTTTTTTAGGAGAAA+TGG | + | chr6.1:3137526-3137545 | None:intergenic | 25.0% |
| !!! | ATCTTAAAATGGTGGAATTT+TGG | + | chr6.1:3136179-3136198 | None:intergenic | 25.0% |
| !!! | ATTTTTTATTTACCTGGTCA+AGG | + | chr6.1:3136760-3136779 | None:intergenic | 25.0% |
| !!! | GCATATTTTTTGAAGTATTC+TGG | - | chr6.1:3135944-3135963 | MS.gene54644:CDS | 25.0% |
| !!! | TATTTTTTGAAGTATTCTGG+TGG | - | chr6.1:3135947-3135966 | MS.gene54644:CDS | 25.0% |
| !!! | TTGTTTTCAGTTATTTTGGA+TGG | - | chr6.1:3135877-3135896 | MS.gene54644:CDS | 25.0% |
| AATCAATGATGTAACTAGAG+GGG | + | chr6.1:3138118-3138137 | None:intergenic | 30.0% | |
| AATTATAAAGAAGAAGGCTG+TGG | - | chr6.1:3137896-3137915 | MS.gene54644:intron | 30.0% | |
| ACAATGTTTGAATTATGACC+AGG | - | chr6.1:3136794-3136813 | MS.gene54644:intron | 30.0% | |
| ACCAAGACATAAATATCCAA+TGG | + | chr6.1:3139046-3139065 | None:intergenic | 30.0% | |
| AGACATTGCATGTAATATGT+TGG | + | chr6.1:3136031-3136050 | None:intergenic | 30.0% | |
| AGATTTACCATGATTGTAAG+AGG | + | chr6.1:3138829-3138848 | None:intergenic | 30.0% | |
| ATATTCTTGTAGGTAAGCAA+TGG | - | chr6.1:3139347-3139366 | MS.gene54644:intron | 30.0% | |
| ATCAAATGCAAGCAAATATG+TGG | + | chr6.1:3137287-3137306 | None:intergenic | 30.0% | |
| ATGATTAACTAGTAGTCAAG+TGG | + | chr6.1:3138378-3138397 | None:intergenic | 30.0% | |
| ATTACTATTGGAGGGAATTT+AGG | - | chr6.1:3136854-3136873 | MS.gene54644:intron | 30.0% | |
| CAATCAATGATGTAACTAGA+GGG | + | chr6.1:3138119-3138138 | None:intergenic | 30.0% | |
| CACTAAAAGTTCTTAGCTTA+GGG | + | chr6.1:3137792-3137811 | None:intergenic | 30.0% | |
| CCAAGACATAAATATCCAAT+GGG | + | chr6.1:3139045-3139064 | None:intergenic | 30.0% | |
| GTTAATCACATGCAAAATTG+TGG | + | chr6.1:3138565-3138584 | None:intergenic | 30.0% | |
| TCAATCAATGATGTAACTAG+AGG | + | chr6.1:3138120-3138139 | None:intergenic | 30.0% | |
| TCAATCGAAAATGTCTGAAT+CGG | - | chr6.1:3135717-3135736 | MS.gene54644:CDS | 30.0% | |
| TGTATATAATGAACAGGCAA+AGG | - | chr6.1:3138925-3138944 | MS.gene54644:intron | 30.0% | |
| TGTGATTAACCATGTATCTT+AGG | - | chr6.1:3138575-3138594 | MS.gene54644:intron | 30.0% | |
| TTCAACAATGTTGCTAAGTA+TGG | + | chr6.1:3137939-3137958 | None:intergenic | 30.0% | |
| ! | AGTCAACAAAATACTTTTGG+AGG | - | chr6.1:3136890-3136909 | MS.gene54644:intron | 30.0% |
| ! | CATTGTTATTAGAACAATGG+CGG | + | chr6.1:3138725-3138744 | None:intergenic | 30.0% |
| ! | CATTGTTGAATTGTGCATTT+TGG | - | chr6.1:3137949-3137968 | MS.gene54644:intron | 30.0% |
| ! | GCAAATTGATTCAACAAAAG+TGG | - | chr6.1:3136600-3136619 | MS.gene54644:CDS | 30.0% |
| ! | TAGATAAAAGAGTTTTACGC+TGG | + | chr6.1:3135411-3135430 | None:intergenic | 30.0% |
| ! | TCAAGTGATATTTTGTCACT+CGG | - | chr6.1:3135630-3135649 | MS.gene54644:CDS | 30.0% |
| ! | TTTTCTACACCTAAGATACA+TGG | + | chr6.1:3138587-3138606 | None:intergenic | 30.0% |
| !! | TTATTTGTTCTTGTTGTTGC+AGG | - | chr6.1:3135354-3135373 | MS.gene54644:intron | 30.0% |
| !!! | ACAATGTGTGTGTGTTTTTT+AGG | + | chr6.1:3136704-3136723 | None:intergenic | 30.0% |
| !!! | GTCATTTTATTTTGCACTTC+TGG | + | chr6.1:3136329-3136348 | None:intergenic | 30.0% |
| AAAGGTGAAAACGATGATGA+TGG | - | chr6.1:3139428-3139447 | MS.gene54644:intron | 35.0% | |
| AAATTAGCTCGTAACGTTGT+TGG | - | chr6.1:3135191-3135210 | MS.gene54644:CDS | 35.0% | |
| AACAACGTTACGAGCTAATT+TGG | + | chr6.1:3135192-3135211 | None:intergenic | 35.0% | |
| AATGTTGCTAAGTATGGATC+TGG | + | chr6.1:3137933-3137952 | None:intergenic | 35.0% | |
| AGACATAAATATCCAATGGG+TGG | + | chr6.1:3139042-3139061 | None:intergenic | 35.0% | |
| ATAACAATGTTGGCACTTCA+TGG | - | chr6.1:3138736-3138755 | MS.gene54644:intron | 35.0% | |
| ATCAATGATGTAACTAGAGG+GGG | + | chr6.1:3138117-3138136 | None:intergenic | 35.0% | |
| ATTCACACTATAGACACACA+TGG | + | chr6.1:3137577-3137596 | None:intergenic | 35.0% | |
| ATTGGACTGTAATTGATGCA+TGG | - | chr6.1:3137667-3137686 | MS.gene54644:intron | 35.0% | |
| CCACTAAAAGTTCTTAGCTT+AGG | + | chr6.1:3137793-3137812 | None:intergenic | 35.0% | |
| CCCATTGGATATTTATGTCT+TGG | - | chr6.1:3139042-3139061 | MS.gene54644:intron | 35.0% | |
| GAACTTAGGAATGTACTAGT+AGG | - | chr6.1:3137458-3137477 | MS.gene54644:intron | 35.0% | |
| GTCATATAGATTTGTCAGGT+CGG | - | chr6.1:3139285-3139304 | MS.gene54644:CDS | 35.0% | |
| GTTCTCTCTATCAATAGTGT+TGG | - | chr6.1:3138014-3138033 | MS.gene54644:intron | 35.0% | |
| TACTTATATTTGTGACCGGA+GGG | + | chr6.1:3136949-3136968 | None:intergenic | 35.0% | |
| TATTGCAGTCCAACTTTCTA+TGG | - | chr6.1:3137873-3137892 | MS.gene54644:intron | 35.0% | |
| TTACTTATATTTGTGACCGG+AGG | + | chr6.1:3136950-3136969 | None:intergenic | 35.0% | |
| TTGTAGGTAAGCAATGGTAT+AGG | - | chr6.1:3139353-3139372 | MS.gene54644:intron | 35.0% | |
| ! | AGGCTCGACATTTTTGATAT+AGG | - | chr6.1:3135557-3135576 | MS.gene54644:intron | 35.0% |
| ! | ATGAAATGGGTTTGGATGAT+TGG | + | chr6.1:3135468-3135487 | None:intergenic | 35.0% |
| ! | CCTAAGCTAAGAACTTTTAG+TGG | - | chr6.1:3137790-3137809 | MS.gene54644:intron | 35.0% |
| ! | GTTGCTTTATCTTCTCATTG+AGG | - | chr6.1:3138687-3138706 | MS.gene54644:intron | 35.0% |
| ! | TGATATTTTGTCACTCGGTT+AGG | - | chr6.1:3135635-3135654 | MS.gene54644:CDS | 35.0% |
| !! | GTGTGAAATACATGCCATTT+TGG | - | chr6.1:3138963-3138982 | MS.gene54644:intron | 35.0% |
| !! | TGTGCATTTTGGGTGTTTTA+TGG | - | chr6.1:3137960-3137979 | MS.gene54644:intron | 35.0% |
| !!! | GATTTTGAGTTGAAACCAAC+TGG | - | chr6.1:3139452-3139471 | MS.gene54644:intron | 35.0% |
| !!! | TTCGATTTTAGCTAAGTCAC+AGG | + | chr6.1:3139185-3139204 | None:intergenic | 35.0% |
| AAAAATACGTGTACACCCTC+CGG | - | chr6.1:3136931-3136950 | MS.gene54644:intron | 40.0% | |
| AATGGTATAGGAGTGGTTTC+TGG | - | chr6.1:3139365-3139384 | MS.gene54644:intron | 40.0% | |
| ACAACATCGTCAGTTGAACT+AGG | + | chr6.1:3135536-3135555 | None:intergenic | 40.0% | |
| AGAGCACATATTATCTCTCC+TGG | + | chr6.1:3136815-3136834 | None:intergenic | 40.0% | |
| GACTGTAATTGATGCATGGT+TGG | - | chr6.1:3137671-3137690 | MS.gene54644:intron | 40.0% | |
| GGTGGCATAGATGAAAAAGA+TGG | + | chr6.1:3138066-3138085 | None:intergenic | 40.0% | |
| GTTCAACTGACGATGTTGTT+AGG | - | chr6.1:3135537-3135556 | MS.gene54644:intron | 40.0% | |
| TCAATGATGTAACTAGAGGG+GGG | + | chr6.1:3138116-3138135 | None:intergenic | 40.0% | |
| TCTCTAACCAACTTCCTCAA+TGG | - | chr6.1:3138989-3139008 | MS.gene54644:intron | 40.0% | |
| TGCATCTCCTCTTACAATCA+TGG | - | chr6.1:3138819-3138838 | MS.gene54644:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | - | chr6.1:3137066-3137085 | MS.gene54644:intron | 40.0% | |
| TGGCATGTATTTCACACTCT+TGG | + | chr6.1:3138960-3138979 | None:intergenic | 40.0% | |
| TTCATCTATGCCACCAAAAG+TGG | - | chr6.1:3138071-3138090 | MS.gene54644:intron | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | - | chr6.1:3137065-3137084 | MS.gene54644:intron | 40.0% | |
| TTGGTTAGAGAGAGCCAAAA+TGG | + | chr6.1:3138980-3138999 | None:intergenic | 40.0% | |
| ! | TAGTGTTGGAGTTCTCTTTG+AGG | - | chr6.1:3138028-3138047 | MS.gene54644:intron | 40.0% |
| !! | AGAGAACTAGAGTGCTGTTT+GGG | + | chr6.1:3138001-3138020 | None:intergenic | 40.0% |
| AATGTCCTGCCAAGCTATGA+GGG | - | chr6.1:3136233-3136252 | MS.gene54644:intron | 45.0% | |
| AATTGAACTGGTCCTTGACC+AGG | - | chr6.1:3136745-3136764 | MS.gene54644:CDS | 45.0% | |
| ATATGCTCTCATCCACCCAT+TGG | - | chr6.1:3139027-3139046 | MS.gene54644:intron | 45.0% | |
| GCACAAACCATTGAGGAAGT+TGG | + | chr6.1:3138999-3139018 | None:intergenic | 45.0% | |
| GCAGGCAATGTCATCTCTTT+CGG | - | chr6.1:3135372-3135391 | MS.gene54644:intron | 45.0% | |
| GGTAAGCAATGGTATAGGAG+TGG | - | chr6.1:3139358-3139377 | MS.gene54644:intron | 45.0% | |
| GTTAATGAGCCCTCATAGCT+TGG | + | chr6.1:3136245-3136264 | None:intergenic | 45.0% | |
| GTTCGTGAGATCTCCTCAAA+TGG | - | chr6.1:3139476-3139495 | MS.gene54644:CDS | 45.0% | |
| TCTATGCCACCAAAAGTGGA+CGG | - | chr6.1:3138075-3138094 | MS.gene54644:intron | 45.0% | |
| TGCTGTAGCTCTTCCATTTG+AGG | + | chr6.1:3139492-3139511 | None:intergenic | 45.0% | |
| TTGTCCAGCACAAACCATTG+AGG | + | chr6.1:3139006-3139025 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGTTTGTGC+TGG | - | chr6.1:3138999-3139018 | MS.gene54644:intron | 45.0% |
| ! | TACACTTACCCGTCCACTTT+TGG | + | chr6.1:3138087-3138106 | None:intergenic | 45.0% |
| !! | CGTAACGTTGTTGGTGTCAT+AGG | - | chr6.1:3135200-3135219 | MS.gene54644:CDS | 45.0% |
| !! | GAGAGAACTAGAGTGCTGTT+TGG | + | chr6.1:3138002-3138021 | None:intergenic | 45.0% |
| !! | GCTTGCTATTTCTCTCGCAA+AGG | - | chr6.1:3139410-3139429 | MS.gene54644:intron | 45.0% |
| !!! | AACTATTTTAAAAATAAATA+AGG | - | chr6.1:3139214-3139233 | MS.gene54644:intron | 5.0% |
| !!! | ATATTTTAAAATTAGATATT+TGG | + | chr6.1:3136469-3136488 | None:intergenic | 5.0% |
| !!! | ATTTTATTATTTTTTTAAGA+GGG | - | chr6.1:3137092-3137111 | MS.gene54644:intron | 5.0% |
| !!! | TATTTTATTATTTTTTTAAG+AGG | - | chr6.1:3137091-3137110 | MS.gene54644:intron | 5.0% |
| AGCTTGGCAGGACATTGCAT+AGG | + | chr6.1:3136229-3136248 | None:intergenic | 50.0% | |
| CAATGTCCTGCCAAGCTATG+AGG | - | chr6.1:3136232-3136251 | MS.gene54644:intron | 50.0% | |
| CTATGCCACCAAAAGTGGAC+GGG | - | chr6.1:3138076-3138095 | MS.gene54644:intron | 50.0% | |
| GAGATCTCACGAACTCCAGT+TGG | + | chr6.1:3139470-3139489 | None:intergenic | 50.0% | |
| !! | ACTTACCCGTCCACTTTTGG+TGG | + | chr6.1:3138084-3138103 | None:intergenic | 50.0% |
| !! | GTGCTGTTTGGGTGCACAAA+AGG | + | chr6.1:3137990-3138009 | None:intergenic | 50.0% |
| ATGAGCCCTCATAGCTTGGC+AGG | + | chr6.1:3136241-3136260 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3135176 | 3139514 | 3135176 | ID=MS.gene54644 |
| chr6.1 | mRNA | 3135176 | 3139514 | 3135176 | ID=MS.gene54644.t1;Parent=MS.gene54644 |
| chr6.1 | exon | 3139469 | 3139514 | 3139469 | ID=MS.gene54644.t1.exon1;Parent=MS.gene54644.t1 |
| chr6.1 | CDS | 3139469 | 3139514 | 3139469 | ID=cds.MS.gene54644.t1;Parent=MS.gene54644.t1 |
| chr6.1 | exon | 3139278 | 3139314 | 3139278 | ID=MS.gene54644.t1.exon2;Parent=MS.gene54644.t1 |
| chr6.1 | CDS | 3139278 | 3139314 | 3139278 | ID=cds.MS.gene54644.t1;Parent=MS.gene54644.t1 |
| chr6.1 | exon | 3136593 | 3136809 | 3136593 | ID=MS.gene54644.t1.exon3;Parent=MS.gene54644.t1 |
| chr6.1 | CDS | 3136593 | 3136809 | 3136593 | ID=cds.MS.gene54644.t1;Parent=MS.gene54644.t1 |
| chr6.1 | exon | 3135850 | 3136011 | 3135850 | ID=MS.gene54644.t1.exon4;Parent=MS.gene54644.t1 |
| chr6.1 | CDS | 3135850 | 3136011 | 3135850 | ID=cds.MS.gene54644.t1;Parent=MS.gene54644.t1 |
| chr6.1 | exon | 3135627 | 3135749 | 3135627 | ID=MS.gene54644.t1.exon5;Parent=MS.gene54644.t1 |
| chr6.1 | CDS | 3135627 | 3135749 | 3135627 | ID=cds.MS.gene54644.t1;Parent=MS.gene54644.t1 |
| chr6.1 | exon | 3135176 | 3135331 | 3135176 | ID=MS.gene54644.t1.exon6;Parent=MS.gene54644.t1 |
| chr6.1 | CDS | 3135176 | 3135331 | 3135176 | ID=cds.MS.gene54644.t1;Parent=MS.gene54644.t1 |
| Gene Sequence |
| Protein sequence |
