Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54672.t1 | XP_013450818.1 | 71.9 | 228 | 62 | 1 | 1 | 228 | 1 | 226 | 6.90E-86 | 327 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54672.t1 | Q0J349 | 56.2 | 208 | 90 | 1 | 6 | 213 | 7 | 213 | 7.3e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54672.t1 | A0A072U6Z0 | 71.9 | 228 | 62 | 1 | 1 | 228 | 1 | 226 | 5.0e-86 | 327.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54672 | MS.gene009329 | PPI |
| MS.gene54672 | MS.gene31850 | PPI |
| MS.gene54672 | MS.gene044269 | PPI |
| MS.gene54672 | MS.gene70529 | PPI |
| MS.gene54672 | MS.gene46188 | PPI |
| MS.gene55828 | MS.gene54672 | PPI |
| MS.gene54672 | MS.gene048962 | PPI |
| MS.gene54672 | MS.gene25769 | PPI |
| MS.gene54672 | MS.gene52346 | PPI |
| MS.gene54672 | MS.gene81949 | PPI |
| MS.gene54672 | MS.gene009331 | PPI |
| MS.gene69746 | MS.gene54672 | PPI |
| MS.gene54672 | MS.gene02646 | PPI |
| MS.gene54672 | MS.gene02493 | PPI |
| MS.gene013686 | MS.gene54672 | PPI |
| MS.gene90281 | MS.gene54672 | PPI |
| MS.gene54672 | MS.gene026679 | PPI |
| MS.gene54672 | MS.gene93151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54672.t1 | MTR_6g007633 | 75.652 | 230 | 54 | 2 | 1 | 228 | 1 | 230 | 4.61e-122 | 346 |
| MS.gene54672.t1 | MTR_6g007623 | 71.930 | 228 | 62 | 1 | 1 | 228 | 1 | 226 | 1.87e-117 | 334 |
| MS.gene54672.t1 | MTR_6g007637 | 69.903 | 206 | 62 | 0 | 8 | 213 | 10 | 215 | 1.50e-102 | 297 |
| MS.gene54672.t1 | MTR_6g007610 | 53.165 | 237 | 95 | 3 | 1 | 225 | 1 | 233 | 3.47e-79 | 238 |
| MS.gene54672.t1 | MTR_8g099730 | 44.000 | 225 | 117 | 2 | 8 | 224 | 19 | 242 | 1.24e-62 | 196 |
| MS.gene54672.t1 | MTR_4g106990 | 50.495 | 202 | 95 | 2 | 27 | 228 | 35 | 231 | 4.36e-59 | 186 |
| MS.gene54672.t1 | MTR_3g080990 | 45.622 | 217 | 117 | 1 | 10 | 226 | 11 | 226 | 1.37e-58 | 186 |
| MS.gene54672.t1 | MTR_8g099730 | 41.714 | 175 | 93 | 2 | 58 | 224 | 5 | 178 | 7.85e-44 | 146 |
| MS.gene54672.t1 | MTR_2g073190 | 36.937 | 222 | 137 | 3 | 8 | 229 | 15 | 233 | 2.17e-43 | 155 |
| MS.gene54672.t1 | MTR_3g089125 | 40.455 | 220 | 122 | 5 | 11 | 228 | 9 | 221 | 2.20e-43 | 146 |
| MS.gene54672.t1 | MTR_1g029380 | 39.726 | 219 | 129 | 3 | 9 | 226 | 7 | 223 | 6.28e-43 | 145 |
| MS.gene54672.t1 | MTR_8g042490 | 35.135 | 222 | 138 | 3 | 8 | 229 | 15 | 230 | 9.11e-41 | 139 |
| MS.gene54672.t1 | MTR_2g436310 | 40.367 | 218 | 122 | 6 | 10 | 224 | 8 | 220 | 1.35e-39 | 137 |
| MS.gene54672.t1 | MTR_1g028460 | 36.408 | 206 | 128 | 2 | 10 | 213 | 9 | 213 | 7.20e-39 | 135 |
| MS.gene54672.t1 | MTR_8g096320 | 37.209 | 215 | 131 | 3 | 1 | 214 | 3 | 214 | 1.76e-37 | 131 |
| MS.gene54672.t1 | MTR_8g096310 | 32.143 | 224 | 139 | 5 | 9 | 228 | 11 | 225 | 5.19e-36 | 128 |
| MS.gene54672.t1 | MTR_2g007890 | 36.408 | 206 | 123 | 5 | 11 | 214 | 16 | 215 | 8.52e-36 | 128 |
| MS.gene54672.t1 | MTR_5g067530 | 35.749 | 207 | 128 | 4 | 9 | 214 | 12 | 214 | 5.19e-35 | 125 |
| MS.gene54672.t1 | MTR_5g092600 | 36.190 | 210 | 128 | 5 | 11 | 219 | 14 | 218 | 4.93e-34 | 122 |
| MS.gene54672.t1 | MTR_7g007490 | 35.321 | 218 | 135 | 5 | 9 | 225 | 12 | 224 | 5.49e-34 | 122 |
| MS.gene54672.t1 | MTR_3g098910 | 33.171 | 205 | 133 | 3 | 11 | 214 | 13 | 214 | 1.67e-32 | 120 |
| MS.gene54672.t1 | MTR_3g090940 | 31.553 | 206 | 138 | 2 | 10 | 213 | 9 | 213 | 4.92e-32 | 117 |
| MS.gene54672.t1 | MTR_3g090950 | 30.180 | 222 | 149 | 3 | 10 | 226 | 9 | 229 | 2.25e-30 | 113 |
| MS.gene54672.t1 | MTR_7g405710 | 35.185 | 216 | 134 | 5 | 11 | 225 | 13 | 223 | 1.39e-29 | 111 |
| MS.gene54672.t1 | MTR_7g405730 | 34.123 | 211 | 128 | 5 | 11 | 217 | 13 | 216 | 1.34e-27 | 106 |
| MS.gene54672.t1 | MTR_3g098930 | 35.593 | 177 | 112 | 2 | 9 | 185 | 12 | 186 | 2.93e-27 | 103 |
| MS.gene54672.t1 | MTR_8g096320 | 35.811 | 148 | 94 | 1 | 67 | 214 | 13 | 159 | 1.10e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54672.t1 | AT5G62850 | 50.224 | 223 | 109 | 2 | 4 | 226 | 5 | 225 | 1.20e-73 | 224 |
| MS.gene54672.t1 | AT3G28007 | 57.009 | 214 | 90 | 2 | 1 | 213 | 1 | 213 | 1.18e-70 | 216 |
| MS.gene54672.t1 | AT5G62850 | 51.648 | 182 | 88 | 0 | 4 | 185 | 5 | 186 | 5.21e-63 | 196 |
| MS.gene54672.t1 | AT4G10850 | 42.342 | 222 | 126 | 2 | 8 | 228 | 11 | 231 | 3.18e-62 | 195 |
| MS.gene54672.t1 | AT5G40260 | 42.795 | 229 | 128 | 2 | 4 | 229 | 5 | 233 | 6.44e-57 | 181 |
| MS.gene54672.t1 | AT1G66770 | 43.256 | 215 | 118 | 3 | 6 | 217 | 9 | 222 | 5.06e-55 | 177 |
| MS.gene54672.t1 | AT5G40260 | 44.162 | 197 | 108 | 1 | 4 | 198 | 5 | 201 | 5.64e-51 | 165 |
| MS.gene54672.t1 | AT4G15920 | 39.111 | 225 | 126 | 4 | 10 | 226 | 8 | 229 | 1.42e-48 | 160 |
| MS.gene54672.t1 | AT3G16690 | 38.073 | 218 | 129 | 4 | 10 | 226 | 8 | 220 | 6.70e-46 | 152 |
| MS.gene54672.t1 | AT3G16690 | 38.073 | 218 | 129 | 4 | 10 | 226 | 43 | 255 | 1.23e-45 | 153 |
| MS.gene54672.t1 | AT1G21460 | 41.818 | 220 | 123 | 5 | 9 | 226 | 7 | 223 | 7.44e-44 | 148 |
| MS.gene54672.t1 | AT3G14770 | 35.135 | 222 | 139 | 3 | 8 | 229 | 15 | 231 | 3.00e-42 | 143 |
| MS.gene54672.t1 | AT5G53190 | 35.683 | 227 | 135 | 3 | 10 | 226 | 9 | 234 | 1.24e-39 | 137 |
| MS.gene54672.t1 | AT1G21460 | 41.899 | 179 | 101 | 3 | 8 | 185 | 6 | 182 | 3.45e-36 | 127 |
| MS.gene54672.t1 | AT5G23660 | 35.909 | 220 | 133 | 6 | 9 | 225 | 13 | 227 | 5.62e-36 | 128 |
| MS.gene54672.t1 | AT5G50800 | 34.978 | 223 | 138 | 5 | 9 | 227 | 11 | 230 | 4.66e-35 | 126 |
| MS.gene54672.t1 | AT5G13170 | 29.864 | 221 | 149 | 4 | 9 | 226 | 13 | 230 | 1.26e-34 | 125 |
| MS.gene54672.t1 | AT4G25010 | 32.877 | 219 | 143 | 4 | 11 | 228 | 13 | 228 | 1.64e-33 | 122 |
| MS.gene54672.t1 | AT3G48740 | 32.877 | 219 | 141 | 5 | 9 | 225 | 13 | 227 | 1.65e-33 | 122 |
| MS.gene54672.t1 | AT2G39060 | 31.390 | 223 | 144 | 4 | 11 | 227 | 13 | 232 | 2.83e-32 | 118 |
| MS.gene54672.t1 | AT5G50790 | 30.942 | 223 | 148 | 5 | 2 | 222 | 3 | 221 | 3.82e-32 | 119 |
| MS.gene54672.t1 | AT3G16690 | 34.028 | 144 | 92 | 2 | 10 | 152 | 8 | 149 | 6.35e-22 | 89.7 |
Find 50 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAACATTGTTGGAATTAT+AGG | 0.163937 | 6.1:-3603686 | MS.gene54672:intron |
| CCCATGGGACATGTTTGTTT+TGG | 0.262689 | 6.1:-3601981 | MS.gene54672:intron |
| GTGTCAAATACATGCCATTT+TGG | 0.268851 | 6.1:-3602060 | MS.gene54672:CDS |
| TTCAGAAGAAGTTGGGGATT+TGG | 0.271337 | 6.1:-3602359 | MS.gene54672:intron |
| TTTATAATCTTGTAGAAAGT+TGG | 0.335730 | 6.1:+3602855 | None:intergenic |
| TTCTAATTTCAGAAGAAGTT+GGG | 0.344935 | 6.1:-3602366 | MS.gene54672:intron |
| ACTGTTGTCACAACTTAAAC+TGG | 0.350041 | 6.1:+3601756 | None:intergenic |
| CACTAGATGAAAGTTTAAAA+AGG | 0.354643 | 6.1:-3602284 | MS.gene54672:CDS |
| CCTATAATTCCAACAATGTT+AGG | 0.361826 | 6.1:+3603686 | None:intergenic |
| GTCAGCACAGTTGCTAAGTA+TGG | 0.364283 | 6.1:+3602801 | None:intergenic |
| TTTCTAATTTCAGAAGAAGT+TGG | 0.376198 | 6.1:-3602367 | MS.gene54672:intron |
| CAATCAGTTCCTAACATTGT+TGG | 0.382562 | 6.1:-3603695 | MS.gene54672:CDS |
| ACTTCCTCAATGGACTTTGT+TGG | 0.389662 | 6.1:-3602024 | MS.gene54672:CDS |
| TTGCAGTTTAGCAATGGTAT+TGG | 0.397070 | 6.1:-3601864 | MS.gene54672:intron |
| ACGTACCCTTCCTTTCTTGT+TGG | 0.398535 | 6.1:+3602656 | None:intergenic |
| TTTGCCAAAGCGAGCCAAAA+TGG | 0.402251 | 6.1:+3602046 | None:intergenic |
| AACAAGTCCAACACCATTGA+TGG | 0.405041 | 6.1:+3602716 | None:intergenic |
| CAACAATGTTAGGAACTGAT+TGG | 0.419025 | 6.1:+3603696 | None:intergenic |
| CTACAAGATTATAAAGAAGA+AGG | 0.431977 | 6.1:-3602847 | MS.gene54672:CDS |
| TTTATCTTTGCCAACAAGAA+AGG | 0.437086 | 6.1:-3602666 | MS.gene54672:CDS |
| AGGAGAGACATACATCAATA+TGG | 0.444670 | 6.1:+3602227 | None:intergenic |
| GTGACGATGAAAAGGCTGTT+TGG | 0.446823 | 6.1:+3602738 | None:intergenic |
| TGGCATGTATTTGACACTCT+TGG | 0.447356 | 6.1:+3602066 | None:intergenic |
| AAGTTGGGGATTTGGCTACT+TGG | 0.468210 | 6.1:-3602351 | MS.gene54672:CDS |
| GCTTTGGCAAACTTCCTCAA+TGG | 0.493039 | 6.1:-3602034 | MS.gene54672:CDS |
| TATATACTCTTCTCTTCCCA+TGG | 0.496698 | 6.1:-3601997 | MS.gene54672:CDS |
| AATGGTATTGGAGTAATCTC+AGG | 0.497270 | 6.1:-3601852 | MS.gene54672:CDS |
| AGGCTGTTTGGAGTCACAAA+AGG | 0.503396 | 6.1:+3602750 | None:intergenic |
| GATTATAAAGAAGAAGGATG+TGG | 0.509662 | 6.1:-3602841 | MS.gene54672:CDS |
| ATCGTCACCATCAATGGTGT+TGG | 0.515540 | 6.1:-3602723 | MS.gene54672:CDS |
| CATTGATGGTGACGATGAAA+AGG | 0.517615 | 6.1:+3602730 | None:intergenic |
| TTACTTACCACGATGGTAAG+AGG | 0.531597 | 6.1:+3602207 | None:intergenic |
| ACCAAAACAAACATGTCCCA+TGG | 0.532257 | 6.1:+3601980 | None:intergenic |
| GCAGGGACTGTTATCTCGCT+CGG | 0.533717 | 6.1:-3603492 | MS.gene54672:intron |
| ATATGCTTATTACTCGTGCA+AGG | 0.535884 | 6.1:-3601811 | MS.gene54672:CDS |
| TGAATATTGCAGTTTAGCAA+TGG | 0.538212 | 6.1:-3601870 | MS.gene54672:intron |
| TATAAAGAAGAAGGATGTGG+AGG | 0.543491 | 6.1:-3602838 | MS.gene54672:CDS |
| TCTTTGCCAACAAGAAAGGA+AGG | 0.545103 | 6.1:-3602662 | MS.gene54672:CDS |
| GGGGATTTGGCTACTTGGTG+AGG | 0.553353 | 6.1:-3602346 | MS.gene54672:CDS |
| TCTAATTTCAGAAGAAGTTG+GGG | 0.553799 | 6.1:-3602365 | MS.gene54672:intron |
| AGTTGTTCTCATAACAATGT+TGG | 0.565276 | 6.1:-3602307 | MS.gene54672:CDS |
| ACAGTTGCTAAGTATGGATG+AGG | 0.577514 | 6.1:+3602807 | None:intergenic |
| CCAAAACAAACATGTCCCAT+GGG | 0.594538 | 6.1:+3601981 | None:intergenic |
| TATGCTTATTACTCGTGCAA+GGG | 0.598815 | 6.1:-3601810 | MS.gene54672:CDS |
| CTTTGCCAACAAGAAAGGAA+GGG | 0.616935 | 6.1:-3602661 | MS.gene54672:intron |
| TAGTCCAACAAAGTCCATTG+AGG | 0.623011 | 6.1:+3602020 | None:intergenic |
| ATATACTCTTCTCTTCCCAT+GGG | 0.624555 | 6.1:-3601996 | MS.gene54672:CDS |
| AGACATACATCAATATGGTG+AGG | 0.671113 | 6.1:+3602232 | None:intergenic |
| TGTCTCTCCTCTTACCATCG+TGG | 0.675462 | 6.1:-3602214 | MS.gene54672:intron |
| ATAGAAGTTACTTACCACGA+TGG | 0.738901 | 6.1:+3602200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAGTAAAGATATTAA+TGG | + | chr6.1:3602114-3602133 | None:intergenic | 10.0% |
| !! | TTGATATTTACAAATTAAAT+CGG | + | chr6.1:3602891-3602910 | None:intergenic | 10.0% |
| !! | ATAATTGTATCTAATTCAAT+TGG | - | chr6.1:3603557-3603576 | MS.gene54672:intron | 15.0% |
| !! | ATGATCTAAATATATACAAA+TGG | + | chr6.1:3603301-3603320 | None:intergenic | 15.0% |
| !!! | TTATTTTTTCTCACAATTAT+AGG | + | chr6.1:3602481-3602500 | None:intergenic | 15.0% |
| !!! | TTGGTCATTTTAATTTAAAA+AGG | - | chr6.1:3602551-3602570 | MS.gene54672:intron | 15.0% |
| !! | ATATAATAATGAACAGGAAA+AGG | - | chr6.1:3603376-3603395 | MS.gene54672:intron | 20.0% |
| !! | TTTATAATCTTGTAGAAAGT+TGG | + | chr6.1:3602622-3602641 | None:intergenic | 20.0% |
| !!! | TTTGATGTTTACAGTTTTTT+TGG | - | chr6.1:3602526-3602545 | MS.gene54672:intron | 20.0% |
| ! | CACTAGATGAAAGTTTAAAA+AGG | - | chr6.1:3603190-3603209 | MS.gene54672:intron | 25.0% |
| ! | CTACAAGATTATAAAGAAGA+AGG | - | chr6.1:3602627-3602646 | MS.gene54672:intron | 25.0% |
| ! | GAGCAACTAAAGAATATAAA+TGG | + | chr6.1:3603070-3603089 | None:intergenic | 25.0% |
| ! | GTTAATCGATTAATCATTCA+TGG | - | chr6.1:3601912-3601931 | MS.gene54672:intron | 25.0% |
| ! | GTTGGCAAAGATAAAAAATA+TGG | + | chr6.1:3602803-3602822 | None:intergenic | 25.0% |
| ! | TAATGGTTAAAGTTGCTTAT+TGG | + | chr6.1:3602097-3602116 | None:intergenic | 25.0% |
| ! | TATACAGCGAAACATTAAAT+CGG | + | chr6.1:3603359-3603378 | None:intergenic | 25.0% |
| ! | TCGGAAAAAAAACAAACATT+TGG | + | chr6.1:3602960-3602979 | None:intergenic | 25.0% |
| ! | TTCTAATTTCAGAAGAAGTT+GGG | - | chr6.1:3603108-3603127 | MS.gene54672:intron | 25.0% |
| ! | TTTCTAATTTCAGAAGAAGT+TGG | - | chr6.1:3603107-3603126 | MS.gene54672:intron | 25.0% |
| AACAACTGCAGCAAAAAAAA+CGG | + | chr6.1:3603154-3603173 | None:intergenic | 30.0% | |
| AGTTGTTCTCATAACAATGT+TGG | - | chr6.1:3603167-3603186 | MS.gene54672:intron | 30.0% | |
| ATTATAGGTGATCAAACCTA+CGG | + | chr6.1:3602466-3602485 | None:intergenic | 30.0% | |
| CCTAACATTGTTGGAATTAT+AGG | - | chr6.1:3601788-3601807 | MS.gene54672:CDS | 30.0% | |
| CCTATAATTCCAACAATGTT+AGG | + | chr6.1:3601791-3601810 | None:intergenic | 30.0% | |
| CGCTGTATATAATAATGAAC+AGG | - | chr6.1:3603370-3603389 | MS.gene54672:intron | 30.0% | |
| GATTATAAAGAAGAAGGATG+TGG | - | chr6.1:3602633-3602652 | MS.gene54672:intron | 30.0% | |
| TCTAATTTCAGAAGAAGTTG+GGG | - | chr6.1:3603109-3603128 | MS.gene54672:intron | 30.0% | |
| TGAATATTGCAGTTTAGCAA+TGG | - | chr6.1:3603604-3603623 | MS.gene54672:intron | 30.0% | |
| TTTATCTTTGCCAACAAGAA+AGG | - | chr6.1:3602808-3602827 | MS.gene54672:CDS | 30.0% | |
| ! | TCATGGACTAATTACGTAAT+CGG | + | chr6.1:3602979-3602998 | None:intergenic | 30.0% |
| !! | ATGTTCTATGTTTTGAATGC+AGG | - | chr6.1:3601964-3601983 | MS.gene54672:intron | 30.0% |
| !! | TGTTCTATGTTTTGAATGCA+GGG | - | chr6.1:3601965-3601984 | MS.gene54672:intron | 30.0% |
| !! | TTGCGACATGTATTTTGAAA+CGG | - | chr6.1:3602277-3602296 | MS.gene54672:CDS | 30.0% |
| !!! | GTTTACAGTTTTTTTGGCAT+TGG | - | chr6.1:3602532-3602551 | MS.gene54672:intron | 30.0% |
| AAGAGAAAGTTTGATTACGC+TGG | + | chr6.1:3602021-3602040 | None:intergenic | 35.0% | |
| AGACATACATCAATATGGTG+AGG | + | chr6.1:3603245-3603264 | None:intergenic | 35.0% | |
| AGGAGAGACATACATCAATA+TGG | + | chr6.1:3603250-3603269 | None:intergenic | 35.0% | |
| ATAGAAGTTACTTACCACGA+TGG | + | chr6.1:3603277-3603296 | None:intergenic | 35.0% | |
| ATATACTCTTCTCTTCCCAT+GGG | - | chr6.1:3603478-3603497 | MS.gene54672:CDS | 35.0% | |
| ATATGCTTATTACTCGTGCA+AGG | - | chr6.1:3603663-3603682 | MS.gene54672:intron | 35.0% | |
| CAACAATGTTAGGAACTGAT+TGG | + | chr6.1:3601781-3601800 | None:intergenic | 35.0% | |
| CAATCAGTTCCTAACATTGT+TGG | - | chr6.1:3601779-3601798 | MS.gene54672:CDS | 35.0% | |
| TATAAAGAAGAAGGATGTGG+AGG | - | chr6.1:3602636-3602655 | MS.gene54672:intron | 35.0% | |
| TATATACTCTTCTCTTCCCA+TGG | - | chr6.1:3603477-3603496 | MS.gene54672:CDS | 35.0% | |
| TATGCTTATTACTCGTGCAA+GGG | - | chr6.1:3603664-3603683 | MS.gene54672:intron | 35.0% | |
| TTGCAGTTTAGCAATGGTAT+TGG | - | chr6.1:3603610-3603629 | MS.gene54672:intron | 35.0% | |
| ! | AATGGTATTGGAGTAATCTC+AGG | - | chr6.1:3603622-3603641 | MS.gene54672:intron | 35.0% |
| !! | GTGTCAAATACATGCCATTT+TGG | - | chr6.1:3603414-3603433 | MS.gene54672:intron | 35.0% |
| !!! | GACATGTATTTTGAAACGGA+AGG | - | chr6.1:3602281-3602300 | MS.gene54672:CDS | 35.0% |
| !!! | GACATGTATTTTGGAATGGA+GGG | + | chr6.1:3602055-3602074 | None:intergenic | 35.0% |
| !!! | TGTGCATTTTTGGTCTTCTA+TGG | - | chr6.1:3602697-3602716 | MS.gene54672:CDS | 35.0% |
| AACAAGTCCAACACCATTGA+TGG | + | chr6.1:3602761-3602780 | None:intergenic | 40.0% | |
| ACAGTTGCTAAGTATGGATG+AGG | + | chr6.1:3602670-3602689 | None:intergenic | 40.0% | |
| ACCAAAACAAACATGTCCCA+TGG | + | chr6.1:3603497-3603516 | None:intergenic | 40.0% | |
| CCAAAACAAACATGTCCCAT+GGG | + | chr6.1:3603496-3603515 | None:intergenic | 40.0% | |
| CTTTGCCAACAAGAAAGGAA+GGG | - | chr6.1:3602813-3602832 | MS.gene54672:CDS | 40.0% | |
| GTGTTTGTGTTAGTGTCATG+TGG | + | chr6.1:3602390-3602409 | None:intergenic | 40.0% | |
| TAGTCCAACAAAGTCCATTG+AGG | + | chr6.1:3603457-3603476 | None:intergenic | 40.0% | |
| TCTTTGCCAACAAGAAAGGA+AGG | - | chr6.1:3602812-3602831 | MS.gene54672:CDS | 40.0% | |
| TGGCATGTATTTGACACTCT+TGG | + | chr6.1:3603411-3603430 | None:intergenic | 40.0% | |
| TTACTTACCACGATGGTAAG+AGG | + | chr6.1:3603270-3603289 | None:intergenic | 40.0% | |
| TTCAGAAGAAGTTGGGGATT+TGG | - | chr6.1:3603115-3603134 | MS.gene54672:intron | 40.0% | |
| ! | ACTTCCTCAATGGACTTTGT+TGG | - | chr6.1:3603450-3603469 | MS.gene54672:intron | 40.0% |
| ! | AGTGTAATTACAAGTGCCGT+AGG | - | chr6.1:3602447-3602466 | MS.gene54672:intron | 40.0% |
| ! | CTTTTCATCGTCACCATCAA+TGG | - | chr6.1:3602745-3602764 | MS.gene54672:CDS | 40.0% |
| ! | GTTGACTGCGACATGTATTT+TGG | + | chr6.1:3602064-3602083 | None:intergenic | 40.0% |
| !! | CATTGATGGTGACGATGAAA+AGG | + | chr6.1:3602747-3602766 | None:intergenic | 40.0% |
| !! | CTGCGACATGTATTTTGGAA+TGG | + | chr6.1:3602059-3602078 | None:intergenic | 40.0% |
| !!! | CGACATGTATTTTGGAATGG+AGG | + | chr6.1:3602056-3602075 | None:intergenic | 40.0% |
| !!! | TGTGCTGACTTGTGCATTTT+TGG | - | chr6.1:3602687-3602706 | MS.gene54672:CDS | 40.0% |
| AAGTTGGGGATTTGGCTACT+TGG | - | chr6.1:3603123-3603142 | MS.gene54672:intron | 45.0% | |
| ACGACTGAGCTAACACATCA+TGG | + | chr6.1:3602996-3603015 | None:intergenic | 45.0% | |
| ACGTACCCTTCCTTTCTTGT+TGG | + | chr6.1:3602821-3602840 | None:intergenic | 45.0% | |
| ATCGTCACCATCAATGGTGT+TGG | - | chr6.1:3602751-3602770 | MS.gene54672:CDS | 45.0% | |
| GCTTTGGCAAACTTCCTCAA+TGG | - | chr6.1:3603440-3603459 | MS.gene54672:intron | 45.0% | |
| GTCAGCACAGTTGCTAAGTA+TGG | + | chr6.1:3602676-3602695 | None:intergenic | 45.0% | |
| GTGACGATGAAAAGGCTGTT+TGG | + | chr6.1:3602739-3602758 | None:intergenic | 45.0% | |
| GTGTTAGTGTCATGTGGTGT+CGG | + | chr6.1:3602384-3602403 | None:intergenic | 45.0% | |
| GTTGCTTATTGGCATGTCTG+TGG | + | chr6.1:3602086-3602105 | None:intergenic | 45.0% | |
| TTTGCCAAAGCGAGCCAAAA+TGG | + | chr6.1:3603431-3603450 | None:intergenic | 45.0% | |
| ! | AGGCTGTTTGGAGTCACAAA+AGG | + | chr6.1:3602727-3602746 | None:intergenic | 45.0% |
| ! | CCCATGGGACATGTTTGTTT+TGG | - | chr6.1:3603493-3603512 | MS.gene54672:intron | 45.0% |
| !! | TATATATTAGTTAAAAATAA+TGG | - | chr6.1:3602218-3602237 | MS.gene54672:CDS | 5.0% |
| TGTCTCTCCTCTTACCATCG+TGG | - | chr6.1:3603260-3603279 | MS.gene54672:intron | 50.0% | |
| !!! | CATGCCATTTTGGCTCGCTT+TGG | - | chr6.1:3603424-3603443 | MS.gene54672:intron | 50.0% |
| GCAGGGACTGTTATCTCGCT+CGG | - | chr6.1:3601982-3602001 | MS.gene54672:CDS | 55.0% | |
| ! | GGGGATTTGGCTACTTGGTG+AGG | - | chr6.1:3603128-3603147 | MS.gene54672:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3601770 | 3603726 | 3601770 | ID=MS.gene54672 |
| chr6.1 | mRNA | 3601770 | 3603726 | 3601770 | ID=MS.gene54672.t1;Parent=MS.gene54672 |
| chr6.1 | exon | 3603687 | 3603726 | 3603687 | ID=MS.gene54672.t1.exon1;Parent=MS.gene54672.t1 |
| chr6.1 | CDS | 3603687 | 3603726 | 3603687 | ID=cds.MS.gene54672.t1;Parent=MS.gene54672.t1 |
| chr6.1 | exon | 3603474 | 3603510 | 3603474 | ID=MS.gene54672.t1.exon2;Parent=MS.gene54672.t1 |
| chr6.1 | CDS | 3603474 | 3603510 | 3603474 | ID=cds.MS.gene54672.t1;Parent=MS.gene54672.t1 |
| chr6.1 | exon | 3602662 | 3602878 | 3602662 | ID=MS.gene54672.t1.exon3;Parent=MS.gene54672.t1 |
| chr6.1 | CDS | 3602662 | 3602878 | 3602662 | ID=cds.MS.gene54672.t1;Parent=MS.gene54672.t1 |
| chr6.1 | exon | 3602215 | 3602376 | 3602215 | ID=MS.gene54672.t1.exon4;Parent=MS.gene54672.t1 |
| chr6.1 | CDS | 3602215 | 3602376 | 3602215 | ID=cds.MS.gene54672.t1;Parent=MS.gene54672.t1 |
| chr6.1 | exon | 3601982 | 3602104 | 3601982 | ID=MS.gene54672.t1.exon5;Parent=MS.gene54672.t1 |
| chr6.1 | CDS | 3601982 | 3602104 | 3601982 | ID=cds.MS.gene54672.t1;Parent=MS.gene54672.t1 |
| chr6.1 | exon | 3601770 | 3601880 | 3601770 | ID=MS.gene54672.t1.exon6;Parent=MS.gene54672.t1 |
| chr6.1 | CDS | 3601770 | 3601880 | 3601770 | ID=cds.MS.gene54672.t1;Parent=MS.gene54672.t1 |
| Gene Sequence |
| Protein sequence |
