Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57027.t1 | KEH28167.1 | 95 | 622 | 29 | 1 | 2 | 621 | 438 | 1059 | 0.00E+00 | 1169.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57027.t1 | O80875 | 33.2 | 617 | 301 | 18 | 8 | 612 | 475 | 992 | 1.6e-64 | 248.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57027.t1 | A0A072UEQ1 | 95.0 | 622 | 29 | 1 | 2 | 621 | 438 | 1059 | 0.0e+00 | 1169.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene57027 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene57027 | 0.830827 | 2.36E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene57027 | 0.813201 | 2.89E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene57027 | 0.825857 | 3.73E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene57027 | 0.815145 | 1.07E-51 | -1.69E-46 |
| MS.gene051147 | MS.gene57027 | 0.803773 | 2.97E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene57027 | 0.831159 | 1.95E-55 | -1.69E-46 |
| MS.gene052190 | MS.gene57027 | 0.828353 | 9.42E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene57027 | 0.815473 | 9.08E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene57027 | 0.806226 | 9.12E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene57027 | 0.814762 | 1.31E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene57027 | 0.806073 | 9.82E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene57027 | 0.835047 | 2.11E-56 | -1.69E-46 |
| MS.gene053966 | MS.gene57027 | 0.822288 | 2.57E-53 | -1.69E-46 |
| MS.gene053967 | MS.gene57027 | 0.809826 | 1.56E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene57027 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene57027 | 0.813896 | 2.03E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene57027 | 0.812181 | 4.83E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene57027 | 0.80215 | 6.43E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene57027 | 0.813548 | 2.42E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene57027 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene57027 | 0.831547 | 1.57E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene57027 | 0.801676 | 8.05E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene57027 | 0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene57027 | 0.811529 | 6.69E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene57027 | 0.808155 | 3.56E-50 | -1.69E-46 |
| MS.gene059607 | MS.gene57027 | 0.804794 | 1.82E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene57027 | 0.814234 | 1.71E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene57027 | 0.824701 | 7.00E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57027.t1 | MTR_5g071060 | 94.864 | 623 | 30 | 1 | 1 | 621 | 437 | 1059 | 0.0 | 1219 |
| MS.gene57027.t1 | MTR_5g071060 | 94.864 | 623 | 30 | 1 | 1 | 621 | 470 | 1092 | 0.0 | 1217 |
| MS.gene57027.t1 | MTR_3g464150 | 53.135 | 638 | 244 | 13 | 2 | 620 | 478 | 1079 | 0.0 | 605 |
| MS.gene57027.t1 | MTR_3g070850 | 33.747 | 483 | 283 | 8 | 130 | 600 | 608 | 1065 | 1.26e-68 | 242 |
| MS.gene57027.t1 | MTR_4g129230 | 28.934 | 394 | 213 | 9 | 204 | 589 | 655 | 989 | 1.22e-37 | 150 |
| MS.gene57027.t1 | MTR_7g056197 | 33.730 | 252 | 141 | 4 | 118 | 362 | 337 | 569 | 3.17e-26 | 114 |
| MS.gene57027.t1 | MTR_4g127290 | 28.159 | 277 | 145 | 10 | 214 | 483 | 449 | 678 | 7.98e-13 | 72.0 |
| MS.gene57027.t1 | MTR_3g461000 | 25.795 | 283 | 160 | 11 | 196 | 468 | 444 | 686 | 1.28e-11 | 68.2 |
| MS.gene57027.t1 | MTR_1g057150 | 30.058 | 173 | 115 | 3 | 208 | 376 | 561 | 731 | 3.31e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57027.t1 | AT2G29970 | 33.067 | 626 | 307 | 20 | 8 | 620 | 475 | 1001 | 7.33e-74 | 256 |
| MS.gene57027.t1 | AT1G07200 | 31.738 | 627 | 285 | 19 | 2 | 620 | 486 | 977 | 6.58e-70 | 244 |
| MS.gene57027.t1 | AT1G07200 | 33.797 | 503 | 238 | 13 | 124 | 620 | 7 | 420 | 4.98e-67 | 225 |
| MS.gene57027.t1 | AT2G40130 | 30.846 | 402 | 237 | 13 | 209 | 607 | 534 | 897 | 1.40e-45 | 174 |
| MS.gene57027.t1 | AT2G40130 | 30.846 | 402 | 237 | 13 | 209 | 607 | 537 | 900 | 1.53e-45 | 174 |
| MS.gene57027.t1 | AT5G57710 | 28.228 | 457 | 245 | 13 | 136 | 576 | 553 | 942 | 3.58e-35 | 142 |
| MS.gene57027.t1 | AT4G30350 | 26.933 | 401 | 221 | 12 | 204 | 597 | 565 | 900 | 1.18e-33 | 137 |
| MS.gene57027.t1 | AT3G52490 | 27.368 | 190 | 119 | 4 | 197 | 376 | 562 | 742 | 9.71e-14 | 75.1 |
Find 117 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTGCAGAGACTATATT+TGG | 0.207145 | 5.1:+54813191 | MS.gene57027:CDS |
| ATTCCTGTGACCACAGATTT+AGG | 0.222965 | 5.1:+54812783 | MS.gene57027:CDS |
| AATCTGTGGTCACAGGAATT+AGG | 0.235180 | 5.1:-54812779 | None:intergenic |
| TAATTGCATTTGACATCTTT+TGG | 0.275201 | 5.1:-54813585 | None:intergenic |
| TCTTGAAATTCTGAAGTATC+TGG | 0.280417 | 5.1:-54812846 | None:intergenic |
| TAGTGACTTCTGCGATAAAA+TGG | 0.284059 | 5.1:+54813886 | MS.gene57027:CDS |
| AAGCTTGAATGATAAGATAT+TGG | 0.293607 | 5.1:+54812398 | MS.gene57027:CDS |
| TATGTTATGACTTGTTTATA+AGG | 0.308867 | 5.1:+54813300 | MS.gene57027:CDS |
| CCATTACAAAATCAATTTCA+TGG | 0.320358 | 5.1:-54813844 | None:intergenic |
| TACAGAAAGCATCATCTCTT+TGG | 0.321035 | 5.1:+54813217 | MS.gene57027:CDS |
| ATTTGTACTAAAGCTTCTTT+TGG | 0.330714 | 5.1:-54813633 | None:intergenic |
| GGAAATTGATTACGAGGTTA+TGG | 0.331957 | 5.1:+54814015 | MS.gene57027:CDS |
| AGCTTGAATGATAAGATATT+GGG | 0.342116 | 5.1:+54812399 | MS.gene57027:CDS |
| AGTCATAACATAATGACTTT+TGG | 0.349616 | 5.1:-54813289 | None:intergenic |
| TGTTGAGTCTCTGTAACTTT+CGG | 0.349845 | 5.1:-54812678 | None:intergenic |
| ATCTGTGGTCACAGGAATTA+GGG | 0.357800 | 5.1:-54812778 | None:intergenic |
| TATTGGGATTTCAAAAGAAA+TGG | 0.359140 | 5.1:+54812415 | MS.gene57027:CDS |
| GCTGATTCTGTTGCTGTCAA+TGG | 0.364887 | 5.1:+54812909 | MS.gene57027:CDS |
| TTTGTAGAAGAACCTGATCT+TGG | 0.378115 | 5.1:+54814190 | MS.gene57027:CDS |
| ATTTCCCTTCCACGTGAGTC+TGG | 0.379518 | 5.1:-54813455 | None:intergenic |
| CCTCCTTCCCTGCTTCAAAC+AGG | 0.382083 | 5.1:+54812958 | MS.gene57027:CDS |
| ATACAATTTGAAAAGACATT+TGG | 0.382874 | 5.1:+54813977 | MS.gene57027:CDS |
| TTCCTAGGACCAGATAGAAT+TGG | 0.384589 | 5.1:+54813149 | MS.gene57027:CDS |
| AAAGGTTGGCTGGCAGAATC+AGG | 0.406653 | 5.1:+54813034 | MS.gene57027:CDS |
| CGAGACATCGATGTCCTGTC+TGG | 0.409891 | 5.1:+54813772 | MS.gene57027:CDS |
| TGGATCTCGGCTTCCAAGAC+GGG | 0.411721 | 5.1:+54813237 | MS.gene57027:CDS |
| AAACTTCTCTTTGAAAAGGT+TGG | 0.416418 | 5.1:+54813020 | MS.gene57027:CDS |
| TAATAAACTTCTCTTTGAAA+AGG | 0.425033 | 5.1:+54813016 | MS.gene57027:CDS |
| ACAGTTGTGGACTATATTGC+TGG | 0.426294 | 5.1:+54813326 | MS.gene57027:CDS |
| CACAGATACTTGCAGCTGCT+TGG | 0.434281 | 5.1:+54814038 | MS.gene57027:CDS |
| AGCATCATCTCTTTGGATCT+CGG | 0.436018 | 5.1:+54813224 | MS.gene57027:CDS |
| ATTTATGAAGGGACAGAGTT+CGG | 0.442318 | 5.1:-54813073 | None:intergenic |
| AGGTAACGGCTCTTCTACTT+TGG | 0.445260 | 5.1:+54813523 | MS.gene57027:CDS |
| GTCTCTGCTCTTCCCTTCAC+CGG | 0.446349 | 5.1:-54813096 | None:intergenic |
| TCCCTTCACCGGATTTATGA+AGG | 0.447835 | 5.1:-54813085 | None:intergenic |
| TTTGTTGCCCTGTTTGAAGC+AGG | 0.451430 | 5.1:-54812966 | None:intergenic |
| TTCTCTTTGAAAAGGTTGGC+TGG | 0.453729 | 5.1:+54813024 | MS.gene57027:CDS |
| TTCCAATTCTATCTGGTCCT+AGG | 0.457045 | 5.1:-54813151 | None:intergenic |
| GTGACCACAGATTTAGGATT+GGG | 0.462584 | 5.1:+54812789 | MS.gene57027:CDS |
| GGCAACAAAATTTGATTCAG+TGG | 0.466341 | 5.1:+54812980 | MS.gene57027:CDS |
| TGCATGGTAGAGCAGACATA+TGG | 0.466521 | 5.1:+54813120 | MS.gene57027:CDS |
| GTCAAGATTGTGCGGAGGAA+AGG | 0.469511 | 5.1:+54813656 | MS.gene57027:CDS |
| TACTTCAAGTTAATGCTAGC+TGG | 0.471041 | 5.1:-54814223 | None:intergenic |
| GATTGGGTTGAAAGTGTACT+TGG | 0.477070 | 5.1:+54814088 | MS.gene57027:CDS |
| GACATATGGTTTGCTTTCCT+AGG | 0.481147 | 5.1:+54813134 | MS.gene57027:CDS |
| TTGGATCTCGGCTTCCAAGA+CGG | 0.482403 | 5.1:+54813236 | MS.gene57027:CDS |
| GTATCTGGCTTGTGAGCAAT+TGG | 0.482791 | 5.1:-54812831 | None:intergenic |
| TCAAGATTGTGCGGAGGAAA+GGG | 0.486021 | 5.1:+54813657 | MS.gene57027:CDS |
| TAATGGAAAACTCAGACTCC+TGG | 0.488021 | 5.1:+54813861 | MS.gene57027:CDS |
| TTATCCTCGTCTGTCTGTAA+AGG | 0.489538 | 5.1:+54813503 | MS.gene57027:CDS |
| TAACGGCTCTTCTACTTTGG+TGG | 0.490822 | 5.1:+54813526 | MS.gene57027:CDS |
| TTGGCTCGCCCCTTCACGTA+TGG | 0.491091 | 5.1:+54812719 | MS.gene57027:CDS |
| AAAATGACATGACGACTCCT+TGG | 0.500136 | 5.1:+54812700 | MS.gene57027:CDS |
| TCACCTACTCCAGTACATAC+TGG | 0.504951 | 5.1:+54812621 | MS.gene57027:CDS |
| TGGCATTCGAAAATCGAGTT+CGG | 0.508108 | 5.1:-54813269 | None:intergenic |
| CTAACTGTACCAGTATGTAC+TGG | 0.512199 | 5.1:-54812630 | None:intergenic |
| GGTGCAGAGTAGTTTGCTGC+AGG | 0.512637 | 5.1:+54813412 | MS.gene57027:CDS |
| GCAAGCGCATCAAAATTGAA+TGG | 0.512826 | 5.1:-54813929 | None:intergenic |
| TGCCCTGTTTGAAGCAGGGA+AGG | 0.513387 | 5.1:-54812961 | None:intergenic |
| ACTCTGTCCCTTCATAAATC+CGG | 0.513671 | 5.1:+54813077 | MS.gene57027:CDS |
| CCTCTAGACGAGGGTGAAGA+AGG | 0.516896 | 5.1:+54813806 | MS.gene57027:CDS |
| AGGAAGATGGTCTAGAACAT+TGG | 0.516907 | 5.1:-54812554 | None:intergenic |
| TATGGCCAATATGAGTGTAC+TGG | 0.523428 | 5.1:+54812737 | MS.gene57027:CDS |
| TGTGACCACAGATTTAGGAT+TGG | 0.525210 | 5.1:+54812788 | MS.gene57027:CDS |
| AAAGTACCATGCAACTCTTT+AGG | 0.525861 | 5.1:-54812582 | None:intergenic |
| AACCGTAAAACTTCAAGTGA+TGG | 0.528776 | 5.1:-54812480 | None:intergenic |
| AGACGAGGGTGAAGAAGGTA+TGG | 0.529865 | 5.1:+54813811 | MS.gene57027:CDS |
| CTCATATTGGCCATACGTGA+AGG | 0.530414 | 5.1:-54812729 | None:intergenic |
| ATTTGGTTCAGAGTTTCAGT+TGG | 0.535616 | 5.1:+54813994 | MS.gene57027:CDS |
| GGAAGGCATAGTCCAAGATC+AGG | 0.536013 | 5.1:-54814202 | None:intergenic |
| GGCTCTTCTACTTTGGTGGA+AGG | 0.543217 | 5.1:+54813530 | MS.gene57027:CDS |
| CCCTTCACCGGATTTATGAA+GGG | 0.546292 | 5.1:-54813084 | None:intergenic |
| TGTCAAATGCAATTACTACT+TGG | 0.546960 | 5.1:+54813593 | MS.gene57027:CDS |
| TCCCTTCATAAATCCGGTGA+AGG | 0.551799 | 5.1:+54813083 | MS.gene57027:CDS |
| ATGCAACTCTTTAGGCATGT+AGG | 0.554422 | 5.1:-54812574 | None:intergenic |
| GTTGAAAGTGTACTTGGCAA+AGG | 0.555158 | 5.1:+54814094 | MS.gene57027:CDS |
| TCTTTAGGCATGTAGGAAGA+TGG | 0.559833 | 5.1:-54812567 | None:intergenic |
| CAGTTGTGGACTATATTGCT+GGG | 0.559986 | 5.1:+54813327 | MS.gene57027:CDS |
| TCGGTGGGTAAAGCCCGTCT+TGG | 0.560389 | 5.1:-54813250 | None:intergenic |
| CTCCTTCCCTGCTTCAAACA+GGG | 0.560465 | 5.1:+54812959 | MS.gene57027:CDS |
| AATCCTAAATCTGTGGTCAC+AGG | 0.562833 | 5.1:-54812786 | None:intergenic |
| TCATATTGGCCATACGTGAA+GGG | 0.563309 | 5.1:-54812728 | None:intergenic |
| GAATCAGCTGAAGTAGACTC+TGG | 0.567474 | 5.1:-54812894 | None:intergenic |
| ACCGTAAAACTTCAAGTGAT+GGG | 0.569123 | 5.1:-54812479 | None:intergenic |
| ATCGCAGAAGTCACTAAACC+AGG | 0.571418 | 5.1:-54813879 | None:intergenic |
| ATACGTGAAGGGGCGAGCCA+AGG | 0.571568 | 5.1:-54812717 | None:intergenic |
| CATTCGAAAATCGAGTTCGG+TGG | 0.571972 | 5.1:-54813266 | None:intergenic |
| GTTTATAAGGAAAACAGTTG+TGG | 0.574848 | 5.1:+54813313 | MS.gene57027:CDS |
| AATTTCCAGACTCACGTGGA+AGG | 0.576959 | 5.1:+54813450 | MS.gene57027:CDS |
| TTTAAATATGCCTCTAGACG+AGG | 0.577902 | 5.1:+54813796 | MS.gene57027:CDS |
| TCGTCTGTCTGTAAAGGTAA+CGG | 0.578586 | 5.1:+54813509 | MS.gene57027:CDS |
| AGGCATATTTAAATCCAGAC+AGG | 0.579720 | 5.1:-54813786 | None:intergenic |
| CCTTCTTCACCCTCGTCTAG+AGG | 0.588762 | 5.1:-54813806 | None:intergenic |
| ATTTCCAGACTCACGTGGAA+GGG | 0.591431 | 5.1:+54813451 | MS.gene57027:CDS |
| TTGTTGCCCTGTTTGAAGCA+GGG | 0.592806 | 5.1:-54812965 | None:intergenic |
| GTCAACGTCTTCATCAAGCA+AGG | 0.596891 | 5.1:+54812448 | MS.gene57027:CDS |
| CCCTTCATAAATCCGGTGAA+GGG | 0.600942 | 5.1:+54813084 | MS.gene57027:CDS |
| CCTGTTTGAAGCAGGGAAGG+AGG | 0.607546 | 5.1:-54812958 | None:intergenic |
| ATTCGAAAATCGAGTTCGGT+GGG | 0.609664 | 5.1:-54813265 | None:intergenic |
| AATACTAGTGACTTCAAAGA+GGG | 0.612031 | 5.1:+54813719 | MS.gene57027:CDS |
| TCAAGTTAATGCTAGCTGGA+AGG | 0.613209 | 5.1:-54814219 | None:intergenic |
| CATATTGGCCATACGTGAAG+GGG | 0.617318 | 5.1:-54812727 | None:intergenic |
| CGTTCCCAATCCTAAATCTG+TGG | 0.617888 | 5.1:-54812793 | None:intergenic |
| CAACATATTTAGTTACAGTG+TGG | 0.622997 | 5.1:-54814141 | None:intergenic |
| TTGCTGCAGGCAATAAGAAG+AGG | 0.623229 | 5.1:+54813425 | MS.gene57027:CDS |
| TCAGTTGGAAATTGATTACG+AGG | 0.641742 | 5.1:+54814009 | MS.gene57027:CDS |
| GTACAAATGTCAAGATTGTG+CGG | 0.643353 | 5.1:+54813648 | MS.gene57027:CDS |
| GGGAAGAGCAGAGACTTGCA+TGG | 0.643453 | 5.1:+54813104 | MS.gene57027:CDS |
| TAATACTAGTGACTTCAAAG+AGG | 0.644321 | 5.1:+54813718 | MS.gene57027:CDS |
| TTAAATATGCCTCTAGACGA+GGG | 0.653000 | 5.1:+54813797 | MS.gene57027:CDS |
| GTACCAGTATGTACTGGAGT+AGG | 0.655032 | 5.1:-54812624 | None:intergenic |
| GGTAAATTTCCAGACTCACG+TGG | 0.662916 | 5.1:+54813446 | MS.gene57027:CDS |
| ACTACTTGGAGATACATCTG+AGG | 0.695415 | 5.1:+54813607 | MS.gene57027:CDS |
| AGTTGTGGACTATATTGCTG+GGG | 0.699383 | 5.1:+54813328 | MS.gene57027:CDS |
| TACATGCCTAAAGAGTTGCA+TGG | 0.710225 | 5.1:+54812576 | MS.gene57027:CDS |
| CAAATGTCAAGATTGTGCGG+AGG | 0.727707 | 5.1:+54813651 | MS.gene57027:CDS |
| GTTACCTTTACAGACAGACG+AGG | 0.728710 | 5.1:-54813507 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAATTTGAAAAGACATT+TGG | + | chr5.1:54813977-54813996 | MS.gene57027:CDS | 20.0% |
| !!! | TAATAAACTTCTCTTTGAAA+AGG | + | chr5.1:54813016-54813035 | MS.gene57027:CDS | 20.0% |
| !!! | TATGTTATGACTTGTTTATA+AGG | + | chr5.1:54813300-54813319 | MS.gene57027:CDS | 20.0% |
| ! | AAGCTTGAATGATAAGATAT+TGG | + | chr5.1:54812398-54812417 | MS.gene57027:CDS | 25.0% |
| ! | AGCTTGAATGATAAGATATT+GGG | + | chr5.1:54812399-54812418 | MS.gene57027:CDS | 25.0% |
| ! | CCATTACAAAATCAATTTCA+TGG | - | chr5.1:54813847-54813866 | None:intergenic | 25.0% |
| ! | TATTGGGATTTCAAAAGAAA+TGG | + | chr5.1:54812415-54812434 | MS.gene57027:CDS | 25.0% |
| ! | TGGAAAAAAGAAAATTGCTT+CGG | + | chr5.1:54813169-54813188 | MS.gene57027:CDS | 25.0% |
| !! | AGTCATAACATAATGACTTT+TGG | - | chr5.1:54813292-54813311 | None:intergenic | 25.0% |
| !! | ATTTGTACTAAAGCTTCTTT+TGG | - | chr5.1:54813636-54813655 | None:intergenic | 25.0% |
| !! | TAATTGCATTTGACATCTTT+TGG | - | chr5.1:54813588-54813607 | None:intergenic | 25.0% |
| !! | TTTCTTTTACTCATGAATGA+TGG | - | chr5.1:54813692-54813711 | None:intergenic | 25.0% |
| !!! | CCATGAAATTGATTTTGTAA+TGG | + | chr5.1:54813844-54813863 | MS.gene57027:CDS | 25.0% |
| !!! | TACATTTTCTAGAAAGACAA+CGG | - | chr5.1:54813375-54813394 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCCAATTCTATC+TGG | - | chr5.1:54813161-54813180 | None:intergenic | 25.0% |
| AATACTAGTGACTTCAAAGA+GGG | + | chr5.1:54813719-54813738 | MS.gene57027:CDS | 30.0% | |
| CAACATATTTAGTTACAGTG+TGG | - | chr5.1:54814144-54814163 | None:intergenic | 30.0% | |
| CGATAAAATGGATGAAAAAG+TGG | + | chr5.1:54813898-54813917 | MS.gene57027:CDS | 30.0% | |
| GTTTATAAGGAAAACAGTTG+TGG | + | chr5.1:54813313-54813332 | MS.gene57027:CDS | 30.0% | |
| TAATACTAGTGACTTCAAAG+AGG | + | chr5.1:54813718-54813737 | MS.gene57027:CDS | 30.0% | |
| TGTCAAATGCAATTACTACT+TGG | + | chr5.1:54813593-54813612 | MS.gene57027:CDS | 30.0% | |
| ! | AAACTTCTCTTTGAAAAGGT+TGG | + | chr5.1:54813020-54813039 | MS.gene57027:CDS | 30.0% |
| !! | GTAGGTGATAAATGTTTTGA+TGG | - | chr5.1:54812609-54812628 | None:intergenic | 30.0% |
| !! | TCTTGAAATTCTGAAGTATC+TGG | - | chr5.1:54812849-54812868 | None:intergenic | 30.0% |
| !! | TGTAGATAAAGCTGATTTTC+TGG | + | chr5.1:54813391-54813410 | MS.gene57027:CDS | 30.0% |
| AACCGTAAAACTTCAAGTGA+TGG | - | chr5.1:54812483-54812502 | None:intergenic | 35.0% | |
| ACCGTAAAACTTCAAGTGAT+GGG | - | chr5.1:54812482-54812501 | None:intergenic | 35.0% | |
| AGGCATATTTAAATCCAGAC+AGG | - | chr5.1:54813789-54813808 | None:intergenic | 35.0% | |
| ATTTATGAAGGGACAGAGTT+CGG | - | chr5.1:54813076-54813095 | None:intergenic | 35.0% | |
| GGAAATTGATTACGAGGTTA+TGG | + | chr5.1:54814015-54814034 | MS.gene57027:CDS | 35.0% | |
| GGCAACAAAATTTGATTCAG+TGG | + | chr5.1:54812980-54812999 | MS.gene57027:CDS | 35.0% | |
| GTACAAATGTCAAGATTGTG+CGG | + | chr5.1:54813648-54813667 | MS.gene57027:CDS | 35.0% | |
| TAGTGACTTCTGCGATAAAA+TGG | + | chr5.1:54813886-54813905 | MS.gene57027:CDS | 35.0% | |
| TCAGTTGGAAATTGATTACG+AGG | + | chr5.1:54814009-54814028 | MS.gene57027:CDS | 35.0% | |
| TGTTGAGTCTCTGTAACTTT+CGG | - | chr5.1:54812681-54812700 | None:intergenic | 35.0% | |
| TTAAATATGCCTCTAGACGA+GGG | + | chr5.1:54813797-54813816 | MS.gene57027:CDS | 35.0% | |
| TTTAAATATGCCTCTAGACG+AGG | + | chr5.1:54813796-54813815 | MS.gene57027:CDS | 35.0% | |
| TTTGTAGAAGAACCTGATCT+TGG | + | chr5.1:54814190-54814209 | MS.gene57027:CDS | 35.0% | |
| ! | AAAGTACCATGCAACTCTTT+AGG | - | chr5.1:54812585-54812604 | None:intergenic | 35.0% |
| ! | ATTTGGTTCAGAGTTTCAGT+TGG | + | chr5.1:54813994-54814013 | MS.gene57027:CDS | 35.0% |
| ! | GTTTTCCAGTACACTCATAT+TGG | - | chr5.1:54812745-54812764 | None:intergenic | 35.0% |
| ! | TACTTCAAGTTAATGCTAGC+TGG | - | chr5.1:54814226-54814245 | None:intergenic | 35.0% |
| ! | TCACTTGAAGTTTTACGGTT+TGG | + | chr5.1:54812483-54812502 | MS.gene57027:CDS | 35.0% |
| ! | TCCCATCACTTGAAGTTTTA+CGG | + | chr5.1:54812478-54812497 | MS.gene57027:CDS | 35.0% |
| !! | TACAGAAAGCATCATCTCTT+TGG | + | chr5.1:54813217-54813236 | MS.gene57027:CDS | 35.0% |
| !!! | TTTGACATCTTTTGGCTTCA+AGG | - | chr5.1:54813580-54813599 | None:intergenic | 35.0% |
| AAAATGACATGACGACTCCT+TGG | + | chr5.1:54812700-54812719 | MS.gene57027:CDS | 40.0% | |
| AATCCTAAATCTGTGGTCAC+AGG | - | chr5.1:54812789-54812808 | None:intergenic | 40.0% | |
| AATCTGTGGTCACAGGAATT+AGG | - | chr5.1:54812782-54812801 | None:intergenic | 40.0% | |
| ACTACTTGGAGATACATCTG+AGG | + | chr5.1:54813607-54813626 | MS.gene57027:CDS | 40.0% | |
| ACTCTGTCCCTTCATAAATC+CGG | + | chr5.1:54813077-54813096 | MS.gene57027:CDS | 40.0% | |
| AGAAAAATGCAGTGGAGGAT+TGG | + | chr5.1:54814071-54814090 | MS.gene57027:CDS | 40.0% | |
| AGACAAGAAAAATGCAGTGG+AGG | + | chr5.1:54814066-54814085 | MS.gene57027:CDS | 40.0% | |
| AGCAAGCAAGATGCAAAAAC+AGG | + | chr5.1:54813745-54813764 | MS.gene57027:CDS | 40.0% | |
| AGCAGACAAGAAAAATGCAG+TGG | + | chr5.1:54814063-54814082 | MS.gene57027:CDS | 40.0% | |
| AGCATCATCTCTTTGGATCT+CGG | + | chr5.1:54813224-54813243 | MS.gene57027:CDS | 40.0% | |
| ATCTGTGGTCACAGGAATTA+GGG | - | chr5.1:54812781-54812800 | None:intergenic | 40.0% | |
| ATGCAACTCTTTAGGCATGT+AGG | - | chr5.1:54812577-54812596 | None:intergenic | 40.0% | |
| ATTCCTGTGACCACAGATTT+AGG | + | chr5.1:54812783-54812802 | MS.gene57027:CDS | 40.0% | |
| ATTCGAAAATCGAGTTCGGT+GGG | - | chr5.1:54813268-54813287 | None:intergenic | 40.0% | |
| CTAACTGTACCAGTATGTAC+TGG | - | chr5.1:54812633-54812652 | None:intergenic | 40.0% | |
| GAAAAATGCAGTGGAGGATT+GGG | + | chr5.1:54814072-54814091 | MS.gene57027:CDS | 40.0% | |
| GCAAGCGCATCAAAATTGAA+TGG | - | chr5.1:54813932-54813951 | None:intergenic | 40.0% | |
| GCACTTGCAGAGACTATATT+TGG | + | chr5.1:54813191-54813210 | MS.gene57027:CDS | 40.0% | |
| TAATGGAAAACTCAGACTCC+TGG | + | chr5.1:54813861-54813880 | MS.gene57027:CDS | 40.0% | |
| TACATGCCTAAAGAGTTGCA+TGG | + | chr5.1:54812576-54812595 | MS.gene57027:CDS | 40.0% | |
| TATGGCCAATATGAGTGTAC+TGG | + | chr5.1:54812737-54812756 | MS.gene57027:CDS | 40.0% | |
| TCAAGTTAATGCTAGCTGGA+AGG | - | chr5.1:54814222-54814241 | None:intergenic | 40.0% | |
| TCATATTGGCCATACGTGAA+GGG | - | chr5.1:54812731-54812750 | None:intergenic | 40.0% | |
| TCGTCTGTCTGTAAAGGTAA+CGG | + | chr5.1:54813509-54813528 | MS.gene57027:CDS | 40.0% | |
| TCTTTAGGCATGTAGGAAGA+TGG | - | chr5.1:54812570-54812589 | None:intergenic | 40.0% | |
| TGGCATTCGAAAATCGAGTT+CGG | - | chr5.1:54813272-54813291 | None:intergenic | 40.0% | |
| TTATCCTCGTCTGTCTGTAA+AGG | + | chr5.1:54813503-54813522 | MS.gene57027:CDS | 40.0% | |
| TTCCAATTCTATCTGGTCCT+AGG | - | chr5.1:54813154-54813173 | None:intergenic | 40.0% | |
| TTCCTAGGACCAGATAGAAT+TGG | + | chr5.1:54813149-54813168 | MS.gene57027:CDS | 40.0% | |
| ! | ACAGTTGTGGACTATATTGC+TGG | + | chr5.1:54813326-54813345 | MS.gene57027:CDS | 40.0% |
| ! | AGGAAGATGGTCTAGAACAT+TGG | - | chr5.1:54812557-54812576 | None:intergenic | 40.0% |
| ! | AGTTGTGGACTATATTGCTG+GGG | + | chr5.1:54813328-54813347 | MS.gene57027:CDS | 40.0% |
| ! | CAGTTGTGGACTATATTGCT+GGG | + | chr5.1:54813327-54813346 | MS.gene57027:CDS | 40.0% |
| ! | GTGACCACAGATTTAGGATT+GGG | + | chr5.1:54812789-54812808 | MS.gene57027:CDS | 40.0% |
| ! | GTTGAAAGTGTACTTGGCAA+AGG | + | chr5.1:54814094-54814113 | MS.gene57027:CDS | 40.0% |
| ! | TGTGACCACAGATTTAGGAT+TGG | + | chr5.1:54812788-54812807 | MS.gene57027:CDS | 40.0% |
| ! | TTCTCTTTGAAAAGGTTGGC+TGG | + | chr5.1:54813024-54813043 | MS.gene57027:CDS | 40.0% |
| !! | GACATATGGTTTGCTTTCCT+AGG | + | chr5.1:54813134-54813153 | MS.gene57027:CDS | 40.0% |
| !! | GATTGGGTTGAAAGTGTACT+TGG | + | chr5.1:54814088-54814107 | MS.gene57027:CDS | 40.0% |
| !!! | GAAGTTTTACGGTTTGGTTC+AGG | + | chr5.1:54812489-54812508 | MS.gene57027:CDS | 40.0% |
| AATTTCCAGACTCACGTGGA+AGG | + | chr5.1:54813450-54813469 | MS.gene57027:CDS | 45.0% | |
| ATCGCAGAAGTCACTAAACC+AGG | - | chr5.1:54813882-54813901 | None:intergenic | 45.0% | |
| ATTTCCAGACTCACGTGGAA+GGG | + | chr5.1:54813451-54813470 | MS.gene57027:CDS | 45.0% | |
| CAAATGTCAAGATTGTGCGG+AGG | + | chr5.1:54813651-54813670 | MS.gene57027:CDS | 45.0% | |
| CATATTGGCCATACGTGAAG+GGG | - | chr5.1:54812730-54812749 | None:intergenic | 45.0% | |
| CATTCGAAAATCGAGTTCGG+TGG | - | chr5.1:54813269-54813288 | None:intergenic | 45.0% | |
| CCCTTCACCGGATTTATGAA+GGG | - | chr5.1:54813087-54813106 | None:intergenic | 45.0% | |
| CCCTTCATAAATCCGGTGAA+GGG | + | chr5.1:54813084-54813103 | MS.gene57027:CDS | 45.0% | |
| CGTTCCCAATCCTAAATCTG+TGG | - | chr5.1:54812796-54812815 | None:intergenic | 45.0% | |
| CTCATATTGGCCATACGTGA+AGG | - | chr5.1:54812732-54812751 | None:intergenic | 45.0% | |
| GAATCAGCTGAAGTAGACTC+TGG | - | chr5.1:54812897-54812916 | None:intergenic | 45.0% | |
| GGTAAATTTCCAGACTCACG+TGG | + | chr5.1:54813446-54813465 | MS.gene57027:CDS | 45.0% | |
| GTACCAGTATGTACTGGAGT+AGG | - | chr5.1:54812627-54812646 | None:intergenic | 45.0% | |
| GTCAACGTCTTCATCAAGCA+AGG | + | chr5.1:54812448-54812467 | MS.gene57027:CDS | 45.0% | |
| GTTACCTTTACAGACAGACG+AGG | - | chr5.1:54813510-54813529 | None:intergenic | 45.0% | |
| TAACGGCTCTTCTACTTTGG+TGG | + | chr5.1:54813526-54813545 | MS.gene57027:CDS | 45.0% | |
| TCAAGATTGTGCGGAGGAAA+GGG | + | chr5.1:54813657-54813676 | MS.gene57027:CDS | 45.0% | |
| TCACCTACTCCAGTACATAC+TGG | + | chr5.1:54812621-54812640 | MS.gene57027:CDS | 45.0% | |
| TCCCTTCACCGGATTTATGA+AGG | - | chr5.1:54813088-54813107 | None:intergenic | 45.0% | |
| TCCCTTCATAAATCCGGTGA+AGG | + | chr5.1:54813083-54813102 | MS.gene57027:CDS | 45.0% | |
| TGCATGGTAGAGCAGACATA+TGG | + | chr5.1:54813120-54813139 | MS.gene57027:CDS | 45.0% | |
| TTGCTGCAGGCAATAAGAAG+AGG | + | chr5.1:54813425-54813444 | MS.gene57027:CDS | 45.0% | |
| ! | AGGTAACGGCTCTTCTACTT+TGG | + | chr5.1:54813523-54813542 | MS.gene57027:CDS | 45.0% |
| ! | GCTGATTCTGTTGCTGTCAA+TGG | + | chr5.1:54812909-54812928 | MS.gene57027:CDS | 45.0% |
| ! | GTATCTGGCTTGTGAGCAAT+TGG | - | chr5.1:54812834-54812853 | None:intergenic | 45.0% |
| ! | TTGTTGCCCTGTTTGAAGCA+GGG | - | chr5.1:54812968-54812987 | None:intergenic | 45.0% |
| ! | TTTGTTGCCCTGTTTGAAGC+AGG | - | chr5.1:54812969-54812988 | None:intergenic | 45.0% |
| AGACGAGGGTGAAGAAGGTA+TGG | + | chr5.1:54813811-54813830 | MS.gene57027:CDS | 50.0% | |
| ATTTCCCTTCCACGTGAGTC+TGG | - | chr5.1:54813458-54813477 | None:intergenic | 50.0% | |
| CACAGATACTTGCAGCTGCT+TGG | + | chr5.1:54814038-54814057 | MS.gene57027:CDS | 50.0% | |
| CTCCTTCCCTGCTTCAAACA+GGG | + | chr5.1:54812959-54812978 | MS.gene57027:CDS | 50.0% | |
| GGCTCTTCTACTTTGGTGGA+AGG | + | chr5.1:54813530-54813549 | MS.gene57027:CDS | 50.0% | |
| GTCAAGATTGTGCGGAGGAA+AGG | + | chr5.1:54813656-54813675 | MS.gene57027:CDS | 50.0% | |
| TTGGATCTCGGCTTCCAAGA+CGG | + | chr5.1:54813236-54813255 | MS.gene57027:CDS | 50.0% | |
| ! | AAAGGTTGGCTGGCAGAATC+AGG | + | chr5.1:54813034-54813053 | MS.gene57027:CDS | 50.0% |
| ! | GGAAGGCATAGTCCAAGATC+AGG | - | chr5.1:54814205-54814224 | None:intergenic | 50.0% |
| CCTCCTTCCCTGCTTCAAAC+AGG | + | chr5.1:54812958-54812977 | MS.gene57027:CDS | 55.0% | |
| CCTCTAGACGAGGGTGAAGA+AGG | + | chr5.1:54813806-54813825 | MS.gene57027:CDS | 55.0% | |
| CCTTCTTCACCCTCGTCTAG+AGG | - | chr5.1:54813809-54813828 | None:intergenic | 55.0% | |
| CGAGACATCGATGTCCTGTC+TGG | + | chr5.1:54813772-54813791 | MS.gene57027:CDS | 55.0% | |
| GGGAAGAGCAGAGACTTGCA+TGG | + | chr5.1:54813104-54813123 | MS.gene57027:CDS | 55.0% | |
| GTCTCTGCTCTTCCCTTCAC+CGG | - | chr5.1:54813099-54813118 | None:intergenic | 55.0% | |
| TGGATCTCGGCTTCCAAGAC+GGG | + | chr5.1:54813237-54813256 | MS.gene57027:CDS | 55.0% | |
| ! | CCTGTTTGAAGCAGGGAAGG+AGG | - | chr5.1:54812961-54812980 | None:intergenic | 55.0% |
| ! | TGCCCTGTTTGAAGCAGGGA+AGG | - | chr5.1:54812964-54812983 | None:intergenic | 55.0% |
| !! | GGTGCAGAGTAGTTTGCTGC+AGG | + | chr5.1:54813412-54813431 | MS.gene57027:CDS | 55.0% |
| ATACGTGAAGGGGCGAGCCA+AGG | - | chr5.1:54812720-54812739 | None:intergenic | 60.0% | |
| TCGGTGGGTAAAGCCCGTCT+TGG | - | chr5.1:54813253-54813272 | None:intergenic | 60.0% | |
| ! | TTGGCTCGCCCCTTCACGTA+TGG | + | chr5.1:54812719-54812738 | MS.gene57027:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54812381 | 54814246 | 54812381 | ID=MS.gene57027 |
| chr5.1 | mRNA | 54812381 | 54814246 | 54812381 | ID=MS.gene57027.t1;Parent=MS.gene57027 |
| chr5.1 | exon | 54812381 | 54814246 | 54812381 | ID=MS.gene57027.t1.exon1;Parent=MS.gene57027.t1 |
| chr5.1 | CDS | 54812381 | 54814246 | 54812381 | ID=cds.MS.gene57027.t1;Parent=MS.gene57027.t1 |
| Gene Sequence |
| Protein sequence |
