Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57091.t1 | XP_013450818.1 | 71.1 | 228 | 64 | 1 | 1 | 228 | 1 | 226 | 1.20E-85 | 326.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57091.t1 | Q944M5 | 56.5 | 214 | 91 | 2 | 1 | 213 | 1 | 213 | 6.2e-59 | 228.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57091.t1 | A0A072U6Z0 | 71.1 | 228 | 64 | 1 | 1 | 228 | 1 | 226 | 8.5e-86 | 326.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013686 | MS.gene57091 | PPI |
| MS.gene57091 | MS.gene009329 | PPI |
| MS.gene57091 | MS.gene044269 | PPI |
| MS.gene57091 | MS.gene70529 | PPI |
| MS.gene57091 | MS.gene81949 | PPI |
| MS.gene55828 | MS.gene57091 | PPI |
| MS.gene57091 | MS.gene46188 | PPI |
| MS.gene57091 | MS.gene009331 | PPI |
| MS.gene57091 | MS.gene048962 | PPI |
| MS.gene57091 | MS.gene25769 | PPI |
| MS.gene57091 | MS.gene52346 | PPI |
| MS.gene57091 | MS.gene02493 | PPI |
| MS.gene57091 | MS.gene90281 | PPI |
| MS.gene69746 | MS.gene57091 | PPI |
| MS.gene57091 | MS.gene026679 | PPI |
| MS.gene57091 | MS.gene93151 | PPI |
| MS.gene57091 | MS.gene02646 | PPI |
| MS.gene57091 | MS.gene31850 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57091.t1 | MTR_6g007633 | 73.913 | 230 | 58 | 2 | 1 | 228 | 1 | 230 | 1.87e-119 | 339 |
| MS.gene57091.t1 | MTR_6g007623 | 71.053 | 228 | 64 | 1 | 1 | 228 | 1 | 226 | 7.75e-116 | 330 |
| MS.gene57091.t1 | MTR_6g007637 | 69.417 | 206 | 63 | 0 | 8 | 213 | 10 | 215 | 1.46e-101 | 295 |
| MS.gene57091.t1 | MTR_6g007610 | 52.321 | 237 | 97 | 3 | 1 | 225 | 1 | 233 | 1.73e-77 | 233 |
| MS.gene57091.t1 | MTR_8g099730 | 44.000 | 225 | 117 | 2 | 8 | 224 | 19 | 242 | 2.96e-62 | 195 |
| MS.gene57091.t1 | MTR_4g106990 | 50.990 | 202 | 94 | 2 | 27 | 228 | 35 | 231 | 2.25e-59 | 187 |
| MS.gene57091.t1 | MTR_3g080990 | 45.161 | 217 | 118 | 1 | 10 | 226 | 11 | 226 | 1.37e-57 | 183 |
| MS.gene57091.t1 | MTR_8g099730 | 41.714 | 175 | 93 | 2 | 58 | 224 | 5 | 178 | 6.67e-44 | 146 |
| MS.gene57091.t1 | MTR_1g029380 | 42.453 | 212 | 118 | 4 | 9 | 219 | 7 | 215 | 3.05e-43 | 146 |
| MS.gene57091.t1 | MTR_3g089125 | 40.000 | 220 | 123 | 5 | 11 | 228 | 9 | 221 | 9.61e-42 | 142 |
| MS.gene57091.t1 | MTR_2g073190 | 36.036 | 222 | 139 | 3 | 8 | 229 | 15 | 233 | 1.23e-41 | 150 |
| MS.gene57091.t1 | MTR_2g436310 | 40.367 | 218 | 122 | 6 | 10 | 224 | 8 | 220 | 5.46e-39 | 135 |
| MS.gene57091.t1 | MTR_8g042490 | 34.234 | 222 | 140 | 3 | 8 | 229 | 15 | 230 | 8.50e-39 | 134 |
| MS.gene57091.t1 | MTR_8g096320 | 38.140 | 215 | 129 | 3 | 1 | 214 | 3 | 214 | 6.11e-38 | 132 |
| MS.gene57091.t1 | MTR_1g028460 | 35.922 | 206 | 129 | 2 | 10 | 213 | 9 | 213 | 1.19e-37 | 132 |
| MS.gene57091.t1 | MTR_5g067530 | 36.715 | 207 | 126 | 4 | 9 | 214 | 12 | 214 | 2.39e-35 | 126 |
| MS.gene57091.t1 | MTR_2g007890 | 36.408 | 206 | 123 | 5 | 11 | 214 | 16 | 215 | 6.76e-35 | 125 |
| MS.gene57091.t1 | MTR_8g096310 | 32.143 | 224 | 139 | 5 | 9 | 228 | 11 | 225 | 1.17e-34 | 125 |
| MS.gene57091.t1 | MTR_5g092600 | 37.143 | 210 | 126 | 5 | 11 | 219 | 14 | 218 | 4.82e-34 | 122 |
| MS.gene57091.t1 | MTR_7g007490 | 36.239 | 218 | 133 | 5 | 9 | 225 | 12 | 224 | 8.15e-34 | 122 |
| MS.gene57091.t1 | MTR_3g098910 | 34.146 | 205 | 131 | 3 | 11 | 214 | 13 | 214 | 5.23e-33 | 121 |
| MS.gene57091.t1 | MTR_3g090940 | 31.068 | 206 | 139 | 2 | 10 | 213 | 9 | 213 | 5.04e-31 | 114 |
| MS.gene57091.t1 | MTR_3g090950 | 31.068 | 206 | 139 | 2 | 10 | 213 | 9 | 213 | 2.74e-29 | 110 |
| MS.gene57091.t1 | MTR_7g405710 | 35.648 | 216 | 133 | 5 | 11 | 225 | 13 | 223 | 1.81e-28 | 108 |
| MS.gene57091.t1 | MTR_3g098930 | 37.853 | 177 | 108 | 2 | 9 | 185 | 12 | 186 | 6.49e-28 | 105 |
| MS.gene57091.t1 | MTR_7g405730 | 34.123 | 211 | 128 | 5 | 11 | 217 | 13 | 216 | 4.15e-26 | 102 |
| MS.gene57091.t1 | MTR_8g096320 | 37.162 | 148 | 92 | 1 | 67 | 214 | 13 | 159 | 1.69e-22 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57091.t1 | AT5G62850 | 49.776 | 223 | 110 | 2 | 4 | 226 | 5 | 225 | 2.59e-72 | 220 |
| MS.gene57091.t1 | AT3G28007 | 56.542 | 214 | 91 | 2 | 1 | 213 | 1 | 213 | 1.43e-69 | 214 |
| MS.gene57091.t1 | AT4G10850 | 43.694 | 222 | 123 | 2 | 8 | 228 | 11 | 231 | 8.28e-63 | 197 |
| MS.gene57091.t1 | AT5G62850 | 51.099 | 182 | 89 | 0 | 4 | 185 | 5 | 186 | 7.18e-62 | 192 |
| MS.gene57091.t1 | AT5G40260 | 45.283 | 212 | 114 | 1 | 4 | 213 | 5 | 216 | 1.52e-56 | 180 |
| MS.gene57091.t1 | AT1G66770 | 41.860 | 215 | 121 | 3 | 6 | 217 | 9 | 222 | 2.01e-53 | 172 |
| MS.gene57091.t1 | AT5G40260 | 44.162 | 197 | 108 | 1 | 4 | 198 | 5 | 201 | 7.64e-51 | 164 |
| MS.gene57091.t1 | AT4G15920 | 38.667 | 225 | 127 | 4 | 10 | 226 | 8 | 229 | 1.27e-46 | 155 |
| MS.gene57091.t1 | AT3G16690 | 36.697 | 218 | 132 | 4 | 10 | 226 | 8 | 220 | 2.40e-43 | 146 |
| MS.gene57091.t1 | AT3G16690 | 36.697 | 218 | 132 | 4 | 10 | 226 | 43 | 255 | 4.23e-43 | 146 |
| MS.gene57091.t1 | AT1G21460 | 41.364 | 220 | 124 | 5 | 9 | 226 | 7 | 223 | 5.22e-43 | 145 |
| MS.gene57091.t1 | AT3G14770 | 34.685 | 222 | 140 | 3 | 8 | 229 | 15 | 231 | 2.91e-41 | 140 |
| MS.gene57091.t1 | AT5G53190 | 36.493 | 211 | 131 | 2 | 10 | 218 | 9 | 218 | 4.78e-38 | 133 |
| MS.gene57091.t1 | AT1G21460 | 41.341 | 179 | 102 | 3 | 8 | 185 | 6 | 182 | 2.57e-35 | 124 |
| MS.gene57091.t1 | AT5G50800 | 35.874 | 223 | 136 | 5 | 9 | 227 | 11 | 230 | 3.53e-35 | 127 |
| MS.gene57091.t1 | AT5G23660 | 35.000 | 220 | 135 | 6 | 9 | 225 | 13 | 227 | 8.54e-35 | 125 |
| MS.gene57091.t1 | AT3G48740 | 33.333 | 219 | 140 | 5 | 9 | 225 | 13 | 227 | 1.59e-34 | 125 |
| MS.gene57091.t1 | AT5G13170 | 30.769 | 221 | 147 | 4 | 9 | 226 | 13 | 230 | 2.76e-34 | 124 |
| MS.gene57091.t1 | AT4G25010 | 33.790 | 219 | 141 | 4 | 11 | 228 | 13 | 228 | 9.36e-34 | 122 |
| MS.gene57091.t1 | AT5G50790 | 31.390 | 223 | 147 | 5 | 2 | 222 | 3 | 221 | 5.47e-32 | 118 |
| MS.gene57091.t1 | AT2G39060 | 31.839 | 223 | 143 | 4 | 11 | 227 | 13 | 232 | 1.03e-31 | 117 |
| MS.gene57091.t1 | AT3G16690 | 31.944 | 144 | 95 | 2 | 10 | 152 | 8 | 149 | 1.43e-19 | 83.6 |
Find 48 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAACATTGTTGGAATTAT+AGG | 0.163937 | 6.2:-3643075 | MS.gene57091:intron |
| CCCATGGGACATGTTTGTTT+TGG | 0.262689 | 6.2:-3641474 | MS.gene57091:intron |
| GTGTGAAATACATGCCATTT+TGG | 0.268851 | 6.2:-3641553 | MS.gene57091:CDS |
| TTCAGAAGAAGTTGGGGATT+TGG | 0.271337 | 6.2:-3641852 | MS.gene57091:intron |
| TTTATAATCTTGTAGAAAGT+TGG | 0.335730 | 6.2:+3642240 | None:intergenic |
| TTCTAATTTCAGAAGAAGTT+GGG | 0.344935 | 6.2:-3641859 | MS.gene57091:intron |
| AAGTTGGGGATTTGGCTTCT+TGG | 0.346543 | 6.2:-3641844 | MS.gene57091:CDS |
| ACTGTTGTCACAACTTAAAC+TGG | 0.350041 | 6.2:+3641218 | None:intergenic |
| CACTAGATGAAAGTTTAAAA+AGG | 0.354643 | 6.2:-3641777 | MS.gene57091:CDS |
| CCTATAATTCCAACAATGTT+AGG | 0.361826 | 6.2:+3643075 | None:intergenic |
| GTCAGCACAGTTGCTAAGTA+TGG | 0.364283 | 6.2:+3642186 | None:intergenic |
| CTCGGATTGTTCTTCTCACC+AGG | 0.369938 | 6.2:-3642864 | MS.gene57091:CDS |
| ACTTCCTCAATGGACTTTGC+TGG | 0.372043 | 6.2:-3641517 | MS.gene57091:CDS |
| TTTCTAATTTCAGAAGAAGT+TGG | 0.376198 | 6.2:-3641860 | MS.gene57091:intron |
| CAATCAGTTCCTAACATTGT+TGG | 0.382562 | 6.2:-3643084 | MS.gene57091:CDS |
| ACGTACCCTTCCTTTCTTGT+TGG | 0.385691 | 6.2:+3642041 | None:intergenic |
| TTGCAGTTTAGCAATGGTAT+TGG | 0.397070 | 6.2:-3641326 | MS.gene57091:intron |
| CAACAATGTTAGGAACTGAT+TGG | 0.419025 | 6.2:+3643085 | None:intergenic |
| TTAGCCAAAGCGAGCCAAAA+TGG | 0.429928 | 6.2:+3641539 | None:intergenic |
| TTTATCTATGCCAACAAGAA+AGG | 0.430541 | 6.2:-3642051 | MS.gene57091:CDS |
| TGGCATGTATTTCACACTCT+TGG | 0.431195 | 6.2:+3641559 | None:intergenic |
| CTACAAGATTATAAAGAAGA+AGG | 0.431977 | 6.2:-3642232 | MS.gene57091:CDS |
| AGGAGAGACATACATCAATA+TGG | 0.444670 | 6.2:+3641720 | None:intergenic |
| ATGATGATGAAAAGGCTGTT+TGG | 0.445847 | 6.2:+3642123 | None:intergenic |
| ATCATCATCATCAATGGTGT+TGG | 0.476259 | 6.2:-3642108 | MS.gene57091:CDS |
| TATATACTCTTCTCTTCCCA+TGG | 0.496698 | 6.2:-3641490 | MS.gene57091:CDS |
| AATGGTATTGGAGTAATCTC+AGG | 0.497270 | 6.2:-3641314 | MS.gene57091:CDS |
| AGGCTGTTTGGAGTCACAAA+AGG | 0.503396 | 6.2:+3642135 | None:intergenic |
| GATTATAAAGAAGAAGGATG+TGG | 0.509662 | 6.2:-3642226 | MS.gene57091:CDS |
| TTACTTACCACGATGGTAAG+AGG | 0.531597 | 6.2:+3641700 | None:intergenic |
| ACCAAAACAAACATGTCCCA+TGG | 0.532257 | 6.2:+3641473 | None:intergenic |
| ATATGCTTATTACTCGTGCA+AGG | 0.535884 | 6.2:-3641273 | MS.gene57091:CDS |
| GCTTTGGCTAACTTCCTCAA+TGG | 0.538115 | 6.2:-3641527 | MS.gene57091:CDS |
| TGAATATTGCAGTTTAGCAA+TGG | 0.538212 | 6.2:-3641332 | MS.gene57091:intron |
| TATAAAGAAGAAGGATGTGG+AGG | 0.543491 | 6.2:-3642223 | MS.gene57091:CDS |
| TCTATGCCAACAAGAAAGGA+AGG | 0.543618 | 6.2:-3642047 | MS.gene57091:CDS |
| TCTAATTTCAGAAGAAGTTG+GGG | 0.553799 | 6.2:-3641858 | MS.gene57091:intron |
| AGTTGTTCTCATAACAATGT+TGG | 0.565276 | 6.2:-3641800 | MS.gene57091:CDS |
| GCAGGGACAGTTATCTCGCT+CGG | 0.568638 | 6.2:-3642882 | MS.gene57091:intron |
| ACAGTTGCTAAGTATGGATG+AGG | 0.577514 | 6.2:+3642192 | None:intergenic |
| CCAAAACAAACATGTCCCAT+GGG | 0.594538 | 6.2:+3641474 | None:intergenic |
| TATGCTTATTACTCGTGCAA+GGG | 0.598815 | 6.2:-3641272 | MS.gene57091:CDS |
| ATATACTCTTCTCTTCCCAT+GGG | 0.624555 | 6.2:-3641489 | MS.gene57091:CDS |
| TAGTCCAGCAAAGTCCATTG+AGG | 0.639552 | 6.2:+3641513 | None:intergenic |
| TCGGATTGTTCTTCTCACCA+GGG | 0.644607 | 6.2:-3642863 | MS.gene57091:intron |
| CTATGCCAACAAGAAAGGAA+GGG | 0.660805 | 6.2:-3642046 | MS.gene57091:intron |
| TGTCTCTCCTCTTACCATCG+TGG | 0.675462 | 6.2:-3641707 | MS.gene57091:intron |
| ATAGAAGTTACTTACCACGA+TGG | 0.738901 | 6.2:+3641693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTCATTTTAATTTAAAA+AGG | - | chr6.2:3642017-3642036 | MS.gene57091:intron | 10.0% |
| !! | ATGATCTAAATATATACAAA+TGG | + | chr6.2:3642659-3642678 | None:intergenic | 15.0% |
| !! | TTATCAAATAATGAATCTAT+AGG | + | chr6.2:3642054-3642073 | None:intergenic | 15.0% |
| !! | ATATAATAATGAACAGGAAA+AGG | - | chr6.2:3642734-3642753 | MS.gene57091:intron | 20.0% |
| !! | TTTATAATCTTGTAGAAAGT+TGG | + | chr6.2:3642088-3642107 | None:intergenic | 20.0% |
| !!! | ATAATTGTATCTAGTTCAAT+TGG | - | chr6.2:3642915-3642934 | MS.gene57091:intron | 20.0% |
| !!! | TTTGATGTTTACAGTTTTTT+TGG | - | chr6.2:3641992-3642011 | MS.gene57091:intron | 20.0% |
| !!! | TTTTTTTTGAACAAGTCAAT+TGG | - | chr6.2:3642946-3642965 | MS.gene57091:intron | 20.0% |
| ! | CACTAGATGAAAGTTTAAAA+AGG | - | chr6.2:3642548-3642567 | MS.gene57091:intron | 25.0% |
| ! | CTACAAGATTATAAAGAAGA+AGG | - | chr6.2:3642093-3642112 | MS.gene57091:CDS | 25.0% |
| ! | GTTAATCGATTAATCATTCA+TGG | - | chr6.2:3641373-3641392 | MS.gene57091:intron | 25.0% |
| ! | TATACAGCGAAACATTAAAT+CGG | + | chr6.2:3642717-3642736 | None:intergenic | 25.0% |
| ! | TCAAAACATAGAACATTGAT+CGG | + | chr6.2:3641421-3641440 | None:intergenic | 25.0% |
| ! | TTCTAATTTCAGAAGAAGTT+GGG | - | chr6.2:3642466-3642485 | MS.gene57091:intron | 25.0% |
| ! | TTTCTAATTTCAGAAGAAGT+TGG | - | chr6.2:3642465-3642484 | MS.gene57091:intron | 25.0% |
| !!! | TTATTTTTTCTCACAACTAC+AGG | + | chr6.2:3641947-3641966 | None:intergenic | 25.0% |
| AACAACTGCAGCAAAAAAAA+CGG | + | chr6.2:3642512-3642531 | None:intergenic | 30.0% | |
| ACCATGCAAACGAATATAAA+TGG | + | chr6.2:3642426-3642445 | None:intergenic | 30.0% | |
| ACCATTTATATTCGTTTGCA+TGG | - | chr6.2:3642422-3642441 | MS.gene57091:intron | 30.0% | |
| AGTTGTTCTCATAACAATGT+TGG | - | chr6.2:3642525-3642544 | MS.gene57091:intron | 30.0% | |
| ATGCTTTCACACTATGATTA+TGG | - | chr6.2:3642307-3642326 | MS.gene57091:intron | 30.0% | |
| CCTAACATTGTTGGAATTAT+AGG | - | chr6.2:3641250-3641269 | MS.gene57091:CDS | 30.0% | |
| CCTATAATTCCAACAATGTT+AGG | + | chr6.2:3641253-3641272 | None:intergenic | 30.0% | |
| CGCTGTATATAATAATGAAC+AGG | - | chr6.2:3642728-3642747 | MS.gene57091:intron | 30.0% | |
| GATTATAAAGAAGAAGGATG+TGG | - | chr6.2:3642099-3642118 | MS.gene57091:CDS | 30.0% | |
| GTTGGCATAGATAAAAAAGA+TGG | + | chr6.2:3642269-3642288 | None:intergenic | 30.0% | |
| TCTAATTTCAGAAGAAGTTG+GGG | - | chr6.2:3642467-3642486 | MS.gene57091:intron | 30.0% | |
| TGAATATTGCAGTTTAGCAA+TGG | - | chr6.2:3642993-3643012 | MS.gene57091:intron | 30.0% | |
| TTTATCTATGCCAACAAGAA+AGG | - | chr6.2:3642274-3642293 | MS.gene57091:intron | 30.0% | |
| ! | CTATTTTCTCAGCATTTCAT+CGG | + | chr6.2:3641884-3641903 | None:intergenic | 30.0% |
| ! | CTTTTCATCATCATCATCAA+TGG | - | chr6.2:3642211-3642230 | MS.gene57091:CDS | 30.0% |
| ! | TAACACATCATGGACTAATT+AGG | + | chr6.2:3642342-3642361 | None:intergenic | 30.0% |
| !! | ATGTTCTATGTTTTGAATGC+AGG | - | chr6.2:3641425-3641444 | MS.gene57091:intron | 30.0% |
| !! | CATTGATGATGATGATGAAA+AGG | + | chr6.2:3642213-3642232 | None:intergenic | 30.0% |
| !! | TGTTCTATGTTTTGAATGCA+GGG | - | chr6.2:3641426-3641445 | MS.gene57091:intron | 30.0% |
| AAGAGAAAGTTTGATTACCC+TGG | + | chr6.2:3641482-3641501 | None:intergenic | 35.0% | |
| AGGAGAGACATACATCAATA+TGG | + | chr6.2:3642608-3642627 | None:intergenic | 35.0% | |
| ATAGAAGTTACTTACCACGA+TGG | + | chr6.2:3642635-3642654 | None:intergenic | 35.0% | |
| ATATACTCTTCTCTTCCCAT+GGG | - | chr6.2:3642836-3642855 | MS.gene57091:intron | 35.0% | |
| ATATGCTTATTACTCGTGCA+AGG | - | chr6.2:3643052-3643071 | MS.gene57091:intron | 35.0% | |
| ATCATCATCATCAATGGTGT+TGG | - | chr6.2:3642217-3642236 | MS.gene57091:CDS | 35.0% | |
| CAACAATGTTAGGAACTGAT+TGG | + | chr6.2:3641243-3641262 | None:intergenic | 35.0% | |
| CAATCAGTTCCTAACATTGT+TGG | - | chr6.2:3641241-3641260 | MS.gene57091:CDS | 35.0% | |
| TATAAAGAAGAAGGATGTGG+AGG | - | chr6.2:3642102-3642121 | MS.gene57091:CDS | 35.0% | |
| TATATACTCTTCTCTTCCCA+TGG | - | chr6.2:3642835-3642854 | MS.gene57091:intron | 35.0% | |
| TATGCTTATTACTCGTGCAA+GGG | - | chr6.2:3643053-3643072 | MS.gene57091:intron | 35.0% | |
| TTGCAGTTTAGCAATGGTAT+TGG | - | chr6.2:3642999-3643018 | MS.gene57091:intron | 35.0% | |
| ! | AATGGTATTGGAGTAATCTC+AGG | - | chr6.2:3643011-3643030 | MS.gene57091:intron | 35.0% |
| ! | ATGATGATGAAAAGGCTGTT+TGG | + | chr6.2:3642205-3642224 | None:intergenic | 35.0% |
| !! | GTGTGAAATACATGCCATTT+TGG | - | chr6.2:3642772-3642791 | MS.gene57091:intron | 35.0% |
| !!! | GACATGTATTTTGGAACAGA+GGG | + | chr6.2:3641516-3641535 | None:intergenic | 35.0% |
| !!! | TGTGCATTTTTGGTCTTCTA+TGG | - | chr6.2:3642163-3642182 | MS.gene57091:CDS | 35.0% |
| !!! | TTGCGACATGTGTTTTGAAA+CGG | - | chr6.2:3641741-3641760 | MS.gene57091:CDS | 35.0% |
| ACAGTTGCTAAGTATGGATG+AGG | + | chr6.2:3642136-3642155 | None:intergenic | 40.0% | |
| ACCAAAACAAACATGTCCCA+TGG | + | chr6.2:3642855-3642874 | None:intergenic | 40.0% | |
| ACGAATGAGCTAACACATCA+TGG | + | chr6.2:3642352-3642371 | None:intergenic | 40.0% | |
| CCAAAACAAACATGTCCCAT+GGG | + | chr6.2:3642854-3642873 | None:intergenic | 40.0% | |
| CTATGCCAACAAGAAAGGAA+GGG | - | chr6.2:3642279-3642298 | MS.gene57091:intron | 40.0% | |
| GTTTATTGACATGTGAGCAG+TGG | + | chr6.2:3641547-3641566 | None:intergenic | 40.0% | |
| TACAGGTGATTAAGCCTACA+CGG | + | chr6.2:3641930-3641949 | None:intergenic | 40.0% | |
| TCTATGCCAACAAGAAAGGA+AGG | - | chr6.2:3642278-3642297 | MS.gene57091:intron | 40.0% | |
| TGGCATGTATTTCACACTCT+TGG | + | chr6.2:3642769-3642788 | None:intergenic | 40.0% | |
| TTACTTACCACGATGGTAAG+AGG | + | chr6.2:3642628-3642647 | None:intergenic | 40.0% | |
| TTCAGAAGAAGTTGGGGATT+TGG | - | chr6.2:3642473-3642492 | MS.gene57091:intron | 40.0% | |
| ! | GTTGACTGCGACATGTATTT+TGG | + | chr6.2:3641525-3641544 | None:intergenic | 40.0% |
| !!! | CGACATGTATTTTGGAACAG+AGG | + | chr6.2:3641517-3641536 | None:intergenic | 40.0% |
| !!! | GACATGTGTTTTGAAACGGA+AGG | - | chr6.2:3641745-3641764 | MS.gene57091:CDS | 40.0% |
| !!! | TGTGCTGACTTGTGCATTTT+TGG | - | chr6.2:3642153-3642172 | MS.gene57091:CDS | 40.0% |
| ACGTACCCTTCCTTTCTTGT+TGG | + | chr6.2:3642287-3642306 | None:intergenic | 45.0% | |
| CGTAATTGCAAATGCCGTGT+AGG | - | chr6.2:3641913-3641932 | MS.gene57091:intron | 45.0% | |
| GCTTTGGCTAACTTCCTCAA+TGG | - | chr6.2:3642798-3642817 | MS.gene57091:intron | 45.0% | |
| GTCAGCACAGTTGCTAAGTA+TGG | + | chr6.2:3642142-3642161 | None:intergenic | 45.0% | |
| TAGTCCAGCAAAGTCCATTG+AGG | + | chr6.2:3642815-3642834 | None:intergenic | 45.0% | |
| TCGGATTGTTCTTCTCACCA+GGG | - | chr6.2:3641462-3641481 | MS.gene57091:intron | 45.0% | |
| TTAGCCAAAGCGAGCCAAAA+TGG | + | chr6.2:3642789-3642808 | None:intergenic | 45.0% | |
| ! | AAGTTGGGGATTTGGCTTCT+TGG | - | chr6.2:3642481-3642500 | MS.gene57091:intron | 45.0% |
| ! | ACTTCCTCAATGGACTTTGC+TGG | - | chr6.2:3642808-3642827 | MS.gene57091:intron | 45.0% |
| ! | AGGCTGTTTGGAGTCACAAA+AGG | + | chr6.2:3642193-3642212 | None:intergenic | 45.0% |
| ! | CCCATGGGACATGTTTGTTT+TGG | - | chr6.2:3642851-3642870 | MS.gene57091:intron | 45.0% |
| !! | TATATATTAGTTAAAAATTA+TGG | - | chr6.2:3641682-3641701 | MS.gene57091:intron | 5.0% |
| CTCGGATTGTTCTTCTCACC+AGG | - | chr6.2:3641461-3641480 | MS.gene57091:intron | 50.0% | |
| TGTCTCTCCTCTTACCATCG+TGG | - | chr6.2:3642618-3642637 | MS.gene57091:intron | 50.0% | |
| !!! | CATGCCATTTTGGCTCGCTT+TGG | - | chr6.2:3642782-3642801 | MS.gene57091:intron | 50.0% |
| GCAGGGACAGTTATCTCGCT+CGG | - | chr6.2:3641443-3641462 | MS.gene57091:intron | 55.0% | |
| GTGTTCGCGTTAGTGTCGTG+TGG | + | chr6.2:3641854-3641873 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 3641232 | 3643115 | 3641232 | ID=MS.gene57091 |
| chr6.2 | mRNA | 3641232 | 3643115 | 3641232 | ID=MS.gene57091.t1;Parent=MS.gene57091 |
| chr6.2 | exon | 3643076 | 3643115 | 3643076 | ID=MS.gene57091.t1.exon1;Parent=MS.gene57091.t1 |
| chr6.2 | CDS | 3643076 | 3643115 | 3643076 | ID=cds.MS.gene57091.t1;Parent=MS.gene57091.t1 |
| chr6.2 | exon | 3642864 | 3642900 | 3642864 | ID=MS.gene57091.t1.exon2;Parent=MS.gene57091.t1 |
| chr6.2 | CDS | 3642864 | 3642900 | 3642864 | ID=cds.MS.gene57091.t1;Parent=MS.gene57091.t1 |
| chr6.2 | exon | 3642047 | 3642263 | 3642047 | ID=MS.gene57091.t1.exon3;Parent=MS.gene57091.t1 |
| chr6.2 | CDS | 3642047 | 3642263 | 3642047 | ID=cds.MS.gene57091.t1;Parent=MS.gene57091.t1 |
| chr6.2 | exon | 3641708 | 3641869 | 3641708 | ID=MS.gene57091.t1.exon4;Parent=MS.gene57091.t1 |
| chr6.2 | CDS | 3641708 | 3641869 | 3641708 | ID=cds.MS.gene57091.t1;Parent=MS.gene57091.t1 |
| chr6.2 | exon | 3641475 | 3641597 | 3641475 | ID=MS.gene57091.t1.exon5;Parent=MS.gene57091.t1 |
| chr6.2 | CDS | 3641475 | 3641597 | 3641475 | ID=cds.MS.gene57091.t1;Parent=MS.gene57091.t1 |
| chr6.2 | exon | 3641232 | 3641342 | 3641232 | ID=MS.gene57091.t1.exon6;Parent=MS.gene57091.t1 |
| chr6.2 | CDS | 3641232 | 3641342 | 3641232 | ID=cds.MS.gene57091.t1;Parent=MS.gene57091.t1 |
| Gene Sequence |
| Protein sequence |