Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57991.t1 | XP_003609478.1 | 94.5 | 201 | 11 | 0 | 1 | 201 | 1 | 201 | 2.50E-103 | 384.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57991.t1 | Q9SIY3 | 55.7 | 210 | 84 | 1 | 1 | 201 | 1 | 210 | 2.9e-60 | 233.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57991.t1 | G7JGL5 | 94.5 | 201 | 11 | 0 | 1 | 201 | 1 | 201 | 1.8e-103 | 384.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049255 | MS.gene57991 | 0.820962 | 5.20E-53 | -1.69E-46 |
MS.gene049821 | MS.gene57991 | 0.84629 | 2.38E-59 | -1.69E-46 |
MS.gene049824 | MS.gene57991 | 0.808163 | 3.54E-50 | -1.69E-46 |
MS.gene049825 | MS.gene57991 | 0.816655 | 4.94E-52 | -1.69E-46 |
MS.gene049873 | MS.gene57991 | 0.805479 | 1.31E-49 | -1.69E-46 |
MS.gene050277 | MS.gene57991 | 0.81992 | 9.01E-53 | -1.69E-46 |
MS.gene050303 | MS.gene57991 | 0.824275 | 8.81E-54 | -1.69E-46 |
MS.gene050807 | MS.gene57991 | 0.831797 | 1.36E-55 | -1.69E-46 |
MS.gene050808 | MS.gene57991 | 0.807459 | 5.00E-50 | -1.69E-46 |
MS.gene051328 | MS.gene57991 | 0.83914 | 1.89E-57 | -1.69E-46 |
MS.gene051330 | MS.gene57991 | 0.809059 | 2.28E-50 | -1.69E-46 |
MS.gene05134 | MS.gene57991 | 0.821672 | 3.56E-53 | -1.69E-46 |
MS.gene051700 | MS.gene57991 | 0.815617 | 8.43E-52 | -1.69E-46 |
MS.gene05188 | MS.gene57991 | 0.802781 | 4.77E-49 | -1.69E-46 |
MS.gene051903 | MS.gene57991 | 0.809975 | 1.45E-50 | -1.69E-46 |
MS.gene052133 | MS.gene57991 | 0.831429 | 1.68E-55 | -1.69E-46 |
MS.gene052947 | MS.gene57991 | 0.87801 | 3.97E-69 | -1.69E-46 |
MS.gene053122 | MS.gene57991 | 0.830064 | 3.62E-55 | -1.69E-46 |
MS.gene053226 | MS.gene57991 | 0.804063 | 2.59E-49 | -1.69E-46 |
MS.gene053581 | MS.gene57991 | 0.802491 | 5.47E-49 | -1.69E-46 |
MS.gene055468 | MS.gene57991 | 0.806114 | 9.63E-50 | -1.69E-46 |
MS.gene055555 | MS.gene57991 | 0.807991 | 3.86E-50 | -1.69E-46 |
MS.gene055580 | MS.gene57991 | -0.818142 | 2.29E-52 | -1.69E-46 |
MS.gene055808 | MS.gene57991 | 0.858039 | 1.08E-62 | -1.69E-46 |
MS.gene056043 | MS.gene57991 | -0.815918 | 7.23E-52 | -1.69E-46 |
MS.gene056091 | MS.gene57991 | 0.817299 | 3.54E-52 | -1.69E-46 |
MS.gene056215 | MS.gene57991 | 0.814303 | 1.65E-51 | -1.69E-46 |
MS.gene056631 | MS.gene57991 | 0.843863 | 1.08E-58 | -1.69E-46 |
MS.gene057705 | MS.gene57991 | 0.886444 | 3.40E-72 | -1.69E-46 |
MS.gene05781 | MS.gene57991 | 0.801362 | 9.33E-49 | -1.69E-46 |
MS.gene05953 | MS.gene57991 | 0.826733 | 2.31E-54 | -1.69E-46 |
MS.gene05954 | MS.gene57991 | 0.839988 | 1.14E-57 | -1.69E-46 |
MS.gene06001 | MS.gene57991 | 0.856693 | 2.71E-62 | -1.69E-46 |
MS.gene060365 | MS.gene57991 | 0.801151 | 1.03E-48 | -1.69E-46 |
MS.gene060429 | MS.gene57991 | 0.874911 | 4.66E-68 | -1.69E-46 |
MS.gene060587 | MS.gene57991 | 0.805477 | 1.31E-49 | -1.69E-46 |
MS.gene060917 | MS.gene57991 | 0.81791 | 2.58E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57991.t1 | MTR_4g116130 | 94.527 | 201 | 11 | 0 | 1 | 201 | 1 | 201 | 4.95e-137 | 381 |
MS.gene57991.t1 | MTR_4g116140 | 85.149 | 202 | 29 | 1 | 1 | 201 | 1 | 202 | 6.38e-123 | 346 |
MS.gene57991.t1 | MTR_0182s0050 | 84.239 | 184 | 29 | 0 | 18 | 201 | 5 | 188 | 1.91e-110 | 313 |
MS.gene57991.t1 | MTR_1g115240 | 71.144 | 201 | 30 | 1 | 1 | 201 | 1 | 173 | 3.71e-96 | 277 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57991.t1 | AT2G11890 | 55.714 | 210 | 84 | 1 | 1 | 201 | 1 | 210 | 2.07e-66 | 203 |
MS.gene57991.t1 | AT2G11890 | 47.143 | 210 | 65 | 2 | 1 | 201 | 1 | 173 | 2.37e-47 | 153 |
Find 56 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGGGGTGGTGGGTGAAAA+TGG | 0.155699 | 8.3:-10306493 | MS.gene57991:CDS |
TGAAAATGGGTTTGTGGGTT+TGG | 0.196016 | 8.3:-10306479 | MS.gene57991:CDS |
GGGAGGGTGAAGGATGAATT+TGG | 0.200304 | 8.3:-10306511 | MS.gene57991:CDS |
GTTGGTCGAGTCAAGGATTA+TGG | 0.236549 | 8.3:-10306533 | MS.gene57991:CDS |
GAAAATGGGTTTGTGGGTTT+GGG | 0.245959 | 8.3:-10306478 | MS.gene57991:CDS |
TGAAGAAGATGAGGAGGATT+TGG | 0.275997 | 8.3:-10306602 | MS.gene57991:CDS |
TCGGGATTGCGTTGCTGAAC+CGG | 0.298448 | 8.3:-10306566 | MS.gene57991:CDS |
GTTGAAAGCAAAGGCGGTTT+TGG | 0.306375 | 8.3:-10306644 | MS.gene57991:CDS |
TGATTGGAAAGGTTTGAAAT+TGG | 0.318001 | 8.3:-10306428 | MS.gene57991:CDS |
GTTGCTGAACCGGGGAAGTT+GGG | 0.338043 | 8.3:-10306556 | MS.gene57991:CDS |
GAAGGATGAATTTGGGGTGG+TGG | 0.339048 | 8.3:-10306503 | MS.gene57991:CDS |
GGTGGGTGAAAATGGGTTTG+TGG | 0.340645 | 8.3:-10306485 | MS.gene57991:CDS |
GGAGGGTGAAGGATGAATTT+GGG | 0.368591 | 8.3:-10306510 | MS.gene57991:CDS |
TTGGGGTGGTGGGTGAAAAT+GGG | 0.381102 | 8.3:-10306492 | MS.gene57991:CDS |
GTGGGTGAAAATGGGTTTGT+GGG | 0.382924 | 8.3:-10306484 | MS.gene57991:CDS |
AATGGGTTTGTGGGTTTGGG+AGG | 0.407882 | 8.3:-10306475 | MS.gene57991:CDS |
CGTTGCTGAACCGGGGAAGT+TGG | 0.412112 | 8.3:-10306557 | MS.gene57991:CDS |
GAGGATTTGGATCCGAAGAT+TGG | 0.424344 | 8.3:-10306589 | MS.gene57991:CDS |
AATCTCTTCTTCGACGGCGC+TGG | 0.426538 | 8.3:-10306739 | MS.gene57991:CDS |
CGGGATTGCGTTGCTGAACC+GGG | 0.433058 | 8.3:-10306565 | MS.gene57991:CDS |
TTGGTCGAGTCAAGGATTAT+GGG | 0.449548 | 8.3:-10306532 | MS.gene57991:CDS |
AAGGATGAATTTGGGGTGGT+GGG | 0.462409 | 8.3:-10306502 | MS.gene57991:CDS |
CTTCTTCGACGGCGCTGGAT+CGG | 0.466202 | 8.3:-10306734 | MS.gene57991:CDS |
ATGTGAGGAATGTTTATGAT+TGG | 0.470420 | 8.3:-10306444 | MS.gene57991:CDS |
ACGCAATCCCGACCAATCTT+CGG | 0.484948 | 8.3:+10306577 | None:intergenic |
AAGGATTATGGGGAGGGTGA+AGG | 0.488009 | 8.3:-10306521 | MS.gene57991:CDS |
GAGGAGTTCTTGAAGGAGAA+TGG | 0.490553 | 8.3:-10306319 | MS.gene57991:CDS |
TATTCTCGAGGAGTTCTTGA+AGG | 0.490607 | 8.3:-10306326 | MS.gene57991:CDS |
GTTCATCTTCATCGTAGAAT+CGG | 0.510634 | 8.3:+10306680 | None:intergenic |
TGAACCGGGGAAGTTGGGGT+TGG | 0.522977 | 8.3:-10306551 | MS.gene57991:CDS |
GAGGGTGAAGGATGAATTTG+GGG | 0.527844 | 8.3:-10306509 | MS.gene57991:CDS |
GGTGAAGGATGAATTTGGGG+TGG | 0.535313 | 8.3:-10306506 | MS.gene57991:CDS |
AGTTGGGGTTGGTCGAGTCA+AGG | 0.540513 | 8.3:-10306540 | MS.gene57991:CDS |
TCGACCAACCCCAACTTCCC+CGG | 0.541988 | 8.3:+10306547 | None:intergenic |
ATTTGGATCCGAAGATTGGT+CGG | 0.545088 | 8.3:-10306585 | MS.gene57991:CDS |
TTGCTGAACCGGGGAAGTTG+GGG | 0.545727 | 8.3:-10306555 | MS.gene57991:CDS |
TTTGGATCCGAAGATTGGTC+GGG | 0.546401 | 8.3:-10306584 | MS.gene57991:CDS |
TCGTGTTGAAGAAGATGAGG+AGG | 0.557685 | 8.3:-10306608 | MS.gene57991:CDS |
TGTTGTTTCGTTGAAAGCAA+AGG | 0.565910 | 8.3:-10306653 | MS.gene57991:CDS |
TTTGTTTGAGATTGAATGTG+AGG | 0.585638 | 8.3:-10306374 | MS.gene57991:CDS |
CGAGTCAAGGATTATGGGGA+GGG | 0.587942 | 8.3:-10306527 | MS.gene57991:CDS |
AGGAATGTTTATGATTGGAA+AGG | 0.602550 | 8.3:-10306439 | MS.gene57991:CDS |
CAACATAATCTCTTCTTCGA+CGG | 0.610181 | 8.3:-10306745 | MS.gene57991:CDS |
CGATGAGTGATGACGTGGAA+AGG | 0.614403 | 8.3:+10306769 | None:intergenic |
TTGTTTGAGATTGAATGTGA+GGG | 0.624852 | 8.3:-10306373 | MS.gene57991:CDS |
GAGTCGTGTTGAAGAAGATG+AGG | 0.643846 | 8.3:-10306611 | MS.gene57991:CDS |
CGTCGAAGAAGAGATTATGT+TGG | 0.645098 | 8.3:+10306746 | None:intergenic |
TGTTTCGTTGAAAGCAAAGG+CGG | 0.647467 | 8.3:-10306650 | MS.gene57991:CDS |
TGTGAGGGTTCCGATCCTGA+AGG | 0.648829 | 8.3:-10306358 | MS.gene57991:CDS |
GGGATTGCGTTGCTGAACCG+GGG | 0.653942 | 8.3:-10306564 | MS.gene57991:CDS |
AGGAGCTAAAAGTATTCTCG+AGG | 0.663418 | 8.3:-10306338 | MS.gene57991:CDS |
TCGAGTCAAGGATTATGGGG+AGG | 0.669429 | 8.3:-10306528 | MS.gene57991:CDS |
GAGAAAGCAAAGTAGTGACA+CGG | 0.674575 | 8.3:+10306791 | None:intergenic |
GATTCTACGATGAAGATGAA+CGG | 0.703862 | 8.3:-10306678 | MS.gene57991:CDS |
GTTGGCGATGAGTGATGACG+TGG | 0.723488 | 8.3:+10306764 | None:intergenic |
TGGTCGAGTCAAGGATTATG+GGG | 0.737226 | 8.3:-10306531 | MS.gene57991:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATGAAACTCATTTTGATTT+TGG | - | chr8.3:10306693-10306712 | MS.gene57991:CDS | 25.0% |
AGGAATGTTTATGATTGGAA+AGG | - | chr8.3:10306654-10306673 | MS.gene57991:CDS | 30.0% | |
ATGTGAGGAATGTTTATGAT+TGG | - | chr8.3:10306649-10306668 | MS.gene57991:CDS | 30.0% | |
! | TGATTGGAAAGGTTTGAAAT+TGG | - | chr8.3:10306665-10306684 | MS.gene57991:CDS | 30.0% |
! | TTGTTTGAGATTGAATGTGA+GGG | - | chr8.3:10306720-10306739 | MS.gene57991:CDS | 30.0% |
! | TTTGTTTGAGATTGAATGTG+AGG | - | chr8.3:10306719-10306738 | MS.gene57991:CDS | 30.0% |
CAACATAATCTCTTCTTCGA+CGG | - | chr8.3:10306348-10306367 | MS.gene57991:CDS | 35.0% | |
GATTCTACGATGAAGATGAA+CGG | - | chr8.3:10306415-10306434 | MS.gene57991:CDS | 35.0% | |
GTTCATCTTCATCGTAGAAT+CGG | + | chr8.3:10306416-10306435 | None:intergenic | 35.0% | |
!! | TGTTGTTTCGTTGAAAGCAA+AGG | - | chr8.3:10306440-10306459 | MS.gene57991:CDS | 35.0% |
!!! | AAATTCGCAATTTTTCGAGC+TGG | - | chr8.3:10306825-10306844 | MS.gene57991:CDS | 35.0% |
!!! | AATTCGCAATTTTTCGAGCT+GGG | - | chr8.3:10306826-10306845 | MS.gene57991:CDS | 35.0% |
!!! | AGAATACTTTTAGCTCCTTC+AGG | + | chr8.3:10306753-10306772 | None:intergenic | 35.0% |
ATTTGGATCCGAAGATTGGT+CGG | - | chr8.3:10306508-10306527 | MS.gene57991:CDS | 40.0% | |
CGTCGAAGAAGAGATTATGT+TGG | + | chr8.3:10306350-10306369 | None:intergenic | 40.0% | |
GAGAAAGCAAAGTAGTGACA+CGG | + | chr8.3:10306305-10306324 | None:intergenic | 40.0% | |
TATTCTCGAGGAGTTCTTGA+AGG | - | chr8.3:10306767-10306786 | MS.gene57991:CDS | 40.0% | |
TGAAGAAGATGAGGAGGATT+TGG | - | chr8.3:10306491-10306510 | MS.gene57991:CDS | 40.0% | |
TGTTTCGTTGAAAGCAAAGG+CGG | - | chr8.3:10306443-10306462 | MS.gene57991:CDS | 40.0% | |
TTGGTCGAGTCAAGGATTAT+GGG | - | chr8.3:10306561-10306580 | MS.gene57991:CDS | 40.0% | |
! | GAAAATGGGTTTGTGGGTTT+GGG | - | chr8.3:10306615-10306634 | MS.gene57991:CDS | 40.0% |
! | TGAAAATGGGTTTGTGGGTT+TGG | - | chr8.3:10306614-10306633 | MS.gene57991:CDS | 40.0% |
!! | AGGAGCTAAAAGTATTCTCG+AGG | - | chr8.3:10306755-10306774 | MS.gene57991:CDS | 40.0% |
!!! | ACTTTTAGCTCCTTCAGGAT+CGG | + | chr8.3:10306748-10306767 | None:intergenic | 40.0% |
!!! | TGGGAGGTTTTAAGAATGTG+AGG | - | chr8.3:10306634-10306653 | MS.gene57991:CDS | 40.0% |
GAGGAGTTCTTGAAGGAGAA+TGG | - | chr8.3:10306774-10306793 | MS.gene57991:CDS | 45.0% | |
GAGGATTTGGATCCGAAGAT+TGG | - | chr8.3:10306504-10306523 | MS.gene57991:CDS | 45.0% | |
GAGGGTGAAGGATGAATTTG+GGG | - | chr8.3:10306584-10306603 | MS.gene57991:CDS | 45.0% | |
GAGTCGTGTTGAAGAAGATG+AGG | - | chr8.3:10306482-10306501 | MS.gene57991:CDS | 45.0% | |
GGAGGGTGAAGGATGAATTT+GGG | - | chr8.3:10306583-10306602 | MS.gene57991:CDS | 45.0% | |
GTTGGTCGAGTCAAGGATTA+TGG | - | chr8.3:10306560-10306579 | MS.gene57991:CDS | 45.0% | |
TCGTGTTGAAGAAGATGAGG+AGG | - | chr8.3:10306485-10306504 | MS.gene57991:CDS | 45.0% | |
TGGTCGAGTCAAGGATTATG+GGG | - | chr8.3:10306562-10306581 | MS.gene57991:CDS | 45.0% | |
! | AAGGATGAATTTGGGGTGGT+GGG | - | chr8.3:10306591-10306610 | MS.gene57991:CDS | 45.0% |
! | GTGGGTGAAAATGGGTTTGT+GGG | - | chr8.3:10306609-10306628 | MS.gene57991:CDS | 45.0% |
! | GTTGAAAGCAAAGGCGGTTT+TGG | - | chr8.3:10306449-10306468 | MS.gene57991:CDS | 45.0% |
! | TTTGGATCCGAAGATTGGTC+GGG | - | chr8.3:10306509-10306528 | MS.gene57991:CDS | 45.0% |
AAGGATTATGGGGAGGGTGA+AGG | - | chr8.3:10306572-10306591 | MS.gene57991:CDS | 50.0% | |
ACGCAATCCCGACCAATCTT+CGG | + | chr8.3:10306519-10306538 | None:intergenic | 50.0% | |
CGAGTCAAGGATTATGGGGA+GGG | - | chr8.3:10306566-10306585 | MS.gene57991:CDS | 50.0% | |
GGGAGGGTGAAGGATGAATT+TGG | - | chr8.3:10306582-10306601 | MS.gene57991:CDS | 50.0% | |
GGTGAAGGATGAATTTGGGG+TGG | - | chr8.3:10306587-10306606 | MS.gene57991:CDS | 50.0% | |
TCGAGTCAAGGATTATGGGG+AGG | - | chr8.3:10306565-10306584 | MS.gene57991:CDS | 50.0% | |
! | AATGGGTTTGTGGGTTTGGG+AGG | - | chr8.3:10306618-10306637 | MS.gene57991:CDS | 50.0% |
! | CGATGAGTGATGACGTGGAA+AGG | + | chr8.3:10306327-10306346 | None:intergenic | 50.0% |
! | GAAGGATGAATTTGGGGTGG+TGG | - | chr8.3:10306590-10306609 | MS.gene57991:CDS | 50.0% |
! | GGTGGGTGAAAATGGGTTTG+TGG | - | chr8.3:10306608-10306627 | MS.gene57991:CDS | 50.0% |
!! | TTGGGGTGGTGGGTGAAAAT+GGG | - | chr8.3:10306601-10306620 | MS.gene57991:CDS | 50.0% |
!! | TTTGGGGTGGTGGGTGAAAA+TGG | - | chr8.3:10306600-10306619 | MS.gene57991:CDS | 50.0% |
!!! | GCAAAGGCGGTTTTGGTTGA+TGG | - | chr8.3:10306456-10306475 | MS.gene57991:CDS | 50.0% |
AATCTCTTCTTCGACGGCGC+TGG | - | chr8.3:10306354-10306373 | MS.gene57991:CDS | 55.0% | |
GTTGCTGAACCGGGGAAGTT+GGG | - | chr8.3:10306537-10306556 | MS.gene57991:CDS | 55.0% | |
TCGGGATTGCGTTGCTGAAC+CGG | - | chr8.3:10306527-10306546 | MS.gene57991:CDS | 55.0% | |
TGTGAGGGTTCCGATCCTGA+AGG | - | chr8.3:10306735-10306754 | MS.gene57991:CDS | 55.0% | |
TTGCTGAACCGGGGAAGTTG+GGG | - | chr8.3:10306538-10306557 | MS.gene57991:CDS | 55.0% | |
! | GTTGGCGATGAGTGATGACG+TGG | + | chr8.3:10306332-10306351 | None:intergenic | 55.0% |
!! | AGTTGGGGTTGGTCGAGTCA+AGG | - | chr8.3:10306553-10306572 | MS.gene57991:CDS | 55.0% |
CGGGATTGCGTTGCTGAACC+GGG | - | chr8.3:10306528-10306547 | MS.gene57991:CDS | 60.0% | |
CGTTGCTGAACCGGGGAAGT+TGG | - | chr8.3:10306536-10306555 | MS.gene57991:CDS | 60.0% | |
GGGATTGCGTTGCTGAACCG+GGG | - | chr8.3:10306529-10306548 | MS.gene57991:CDS | 60.0% | |
TCGACCAACCCCAACTTCCC+CGG | + | chr8.3:10306549-10306568 | None:intergenic | 60.0% | |
TGAACCGGGGAAGTTGGGGT+TGG | - | chr8.3:10306542-10306561 | MS.gene57991:CDS | 60.0% | |
! | CTTCTTCGACGGCGCTGGAT+CGG | - | chr8.3:10306359-10306378 | MS.gene57991:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 10306255 | 10306860 | 10306255 | ID=MS.gene57991 |
chr8.3 | mRNA | 10306255 | 10306860 | 10306255 | ID=MS.gene57991.t1;Parent=MS.gene57991 |
chr8.3 | exon | 10306255 | 10306860 | 10306255 | ID=MS.gene57991.t1.exon1;Parent=MS.gene57991.t1 |
chr8.3 | CDS | 10306255 | 10306860 | 10306255 | ID=cds.MS.gene57991.t1;Parent=MS.gene57991.t1 |
Gene Sequence |
Protein sequence |