Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60207.t1 | XP_003608530.1 | 90.6 | 468 | 23 | 4 | 40 | 489 | 1 | 465 | 1.40E-256 | 895.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60207.t1 | G7JE26 | 90.6 | 468 | 23 | 4 | 40 | 489 | 1 | 465 | 9.8e-257 | 895.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene60207 | -0.811859 | 5.67E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene60207 | -0.836355 | 9.82E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene60207 | -0.825292 | 5.08E-54 | -1.69E-46 |
| MS.gene050338 | MS.gene60207 | 0.800249 | 1.57E-48 | -1.69E-46 |
| MS.gene050496 | MS.gene60207 | -0.828676 | 7.87E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene60207 | -0.81102 | 8.63E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene60207 | -0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene050697 | MS.gene60207 | -0.812263 | 4.63E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene60207 | -0.847179 | 1.36E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene60207 | -0.850063 | 2.16E-60 | -1.69E-46 |
| MS.gene05104 | MS.gene60207 | 0.812071 | 5.10E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene60207 | 0.812741 | 3.64E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene60207 | -0.818949 | 1.50E-52 | -1.69E-46 |
| MS.gene051863 | MS.gene60207 | 0.823204 | 1.57E-53 | -1.69E-46 |
| MS.gene051874 | MS.gene60207 | -0.803723 | 3.04E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene60207 | -0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene60207 | -0.800981 | 1.12E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene60207 | -0.819371 | 1.20E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene60207 | -0.81543 | 9.28E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene60207 | -0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene054706 | MS.gene60207 | 0.821883 | 3.19E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene60207 | -0.802269 | 6.08E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene60207 | -0.833849 | 4.21E-56 | -1.69E-46 |
| MS.gene056387 | MS.gene60207 | -0.858822 | 6.33E-63 | -1.69E-46 |
| MS.gene056504 | MS.gene60207 | -0.838541 | 2.70E-57 | -1.69E-46 |
| MS.gene056688 | MS.gene60207 | 0.811543 | 6.64E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene60207 | 0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene057086 | MS.gene60207 | -0.820793 | 5.68E-53 | -1.69E-46 |
| MS.gene058099 | MS.gene60207 | 0.820134 | 8.05E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene60207 | -0.813505 | 2.47E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene60207 | 0.824757 | 6.79E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene60207 | 0.824642 | 7.23E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene60207 | 0.830147 | 3.46E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene60207 | -0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene60207 | 0.808064 | 3.72E-50 | -1.69E-46 |
| MS.gene059223 | MS.gene60207 | 0.808155 | 3.56E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene60207 | 0.800995 | 1.11E-48 | -1.69E-46 |
| MS.gene059699 | MS.gene60207 | 0.822136 | 2.78E-53 | -1.69E-46 |
| MS.gene059703 | MS.gene60207 | 0.828651 | 7.99E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene60207 | -0.826709 | 2.34E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene60207 | -0.850716 | 1.42E-60 | -1.69E-46 |
| MS.gene060595 | MS.gene60207 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene60207 | -0.829976 | 3.81E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene60207 | -0.832182 | 1.09E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60207.t1 | MTR_4g097110 | 89.316 | 468 | 29 | 4 | 40 | 489 | 1 | 465 | 0.0 | 857 |
| MS.gene60207.t1 | MTR_5g015460 | 66.176 | 476 | 130 | 9 | 40 | 490 | 1 | 470 | 0.0 | 645 |
| MS.gene60207.t1 | MTR_5g015460 | 72.019 | 411 | 105 | 4 | 85 | 490 | 62 | 467 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60207.t1 | AT3G49880 | 65.217 | 460 | 137 | 7 | 42 | 483 | 4 | 458 | 0.0 | 612 |
| MS.gene60207.t1 | AT5G67540 | 63.169 | 467 | 131 | 9 | 51 | 483 | 34 | 493 | 0.0 | 595 |
| MS.gene60207.t1 | AT5G67540 | 63.169 | 467 | 131 | 9 | 51 | 483 | 12 | 471 | 0.0 | 595 |
| MS.gene60207.t1 | AT5G67540 | 66.901 | 426 | 128 | 6 | 64 | 483 | 48 | 466 | 0.0 | 595 |
Find 102 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGCTGAGACAATCTT+AGG | 0.186965 | 8.1:-25449081 | MS.gene60207:CDS |
| AAATTTCAAATACTTATTAT+TGG | 0.207042 | 8.1:-25450489 | MS.gene60207:CDS |
| TCCTGGTTTGTTTATCTTCA+TGG | 0.221019 | 8.1:-25448956 | MS.gene60207:CDS |
| ACTGCTACCCTGGGAGAATT+TGG | 0.230166 | 8.1:-25450567 | MS.gene60207:CDS |
| GCTATTCTTCTAAGGATCTA+TGG | 0.248673 | 8.1:-25449584 | MS.gene60207:CDS |
| TTGCAACGAAAATTCGTAAT+TGG | 0.249294 | 8.1:+25450934 | None:intergenic |
| ACCATTGGTTGATGAATTCT+TGG | 0.278506 | 8.1:-25450689 | MS.gene60207:CDS |
| TTTCAACTTGTTGGAGTTGA+TGG | 0.278724 | 8.1:+25450773 | None:intergenic |
| AGTCAACCATGGTTGCAATT+TGG | 0.279964 | 8.1:+25451158 | None:intergenic |
| GGCCAAGAGTTTCTATCTAT+TGG | 0.280101 | 8.1:-25448822 | MS.gene60207:CDS |
| TTCTCATTGTAAATAACTTT+TGG | 0.283365 | 8.1:+25449477 | None:intergenic |
| CTTCCTTTACCTAAGTTTCC+TGG | 0.285443 | 8.1:-25448973 | MS.gene60207:CDS |
| TTTGATATCCATGCGGTCTT+TGG | 0.289529 | 8.1:+25449343 | None:intergenic |
| AGTTGGTTGCTATTCTTCTA+AGG | 0.296029 | 8.1:-25449592 | MS.gene60207:CDS |
| ACACTCACCTGGAACTTTAT+AGG | 0.333849 | 8.1:+25451103 | None:intergenic |
| ATTGATCCAATGAAGACTAT+AGG | 0.340719 | 8.1:-25450616 | MS.gene60207:CDS |
| CCTTTCCCTATAGTCTTCAT+TGG | 0.349246 | 8.1:+25450610 | None:intergenic |
| GAAGATCAAGCACTTCAATA+TGG | 0.356355 | 8.1:-25448862 | MS.gene60207:CDS |
| CTCCATCAGGTGGACATTAT+AGG | 0.359766 | 8.1:-25449615 | MS.gene60207:intron |
| ATTCTCTCCTATAAAGTTCC+AGG | 0.361333 | 8.1:-25451110 | MS.gene60207:intron |
| TGGTTGCCTTTGATTGTTGA+TGG | 0.375658 | 8.1:-25448889 | MS.gene60207:CDS |
| TTATCTTCATGGCGGATAGA+TGG | 0.376808 | 8.1:-25448945 | MS.gene60207:CDS |
| TAAGAGATTCAAGATATGTT+TGG | 0.401561 | 8.1:-25448909 | MS.gene60207:CDS |
| TTGATCCAATGAAGACTATA+GGG | 0.410737 | 8.1:-25450615 | MS.gene60207:CDS |
| CTTGAATCTCTTAACTCACT+TGG | 0.414129 | 8.1:+25448919 | None:intergenic |
| CCTTTGTGTTTGAACATAGC+CGG | 0.433704 | 8.1:+25449162 | None:intergenic |
| TCAAATACTTATTATTGGTA+TGG | 0.434316 | 8.1:-25450484 | MS.gene60207:CDS |
| AGGAGGATGAATGATATTGA+AGG | 0.445423 | 8.1:+25450813 | None:intergenic |
| TTAGGGACATGGGAAACAAT+TGG | 0.448046 | 8.1:-25449063 | MS.gene60207:CDS |
| TTATTATGAGCAAGGTAAGT+AGG | 0.456459 | 8.1:+25450445 | None:intergenic |
| TGGCTACCAAGGTATTTGAA+TGG | 0.456566 | 8.1:+25449363 | None:intergenic |
| ATTGCGGATTGATCTGCCCT+CGG | 0.466490 | 8.1:+25451181 | None:intergenic |
| ATAAACAAACCAGGAAACTT+AGG | 0.469675 | 8.1:+25448964 | None:intergenic |
| CACCCTCCATGAGCTTGAAT+AGG | 0.470225 | 8.1:+25450526 | None:intergenic |
| AGTTATAATTACTGCTACCC+TGG | 0.470470 | 8.1:-25450577 | MS.gene60207:CDS |
| TCAACTCCAACAAGTTGAAA+AGG | 0.485321 | 8.1:-25450770 | MS.gene60207:CDS |
| TTGCGGATTGATCTGCCCTC+GGG | 0.491491 | 8.1:+25451182 | None:intergenic |
| ACATATTACATGGTTACATC+AGG | 0.501941 | 8.1:-25449138 | MS.gene60207:CDS |
| GTCCTTTGTTATTATGAGCA+AGG | 0.505074 | 8.1:+25450437 | None:intergenic |
| GGAAATCCTATTCAAGCTCA+TGG | 0.506131 | 8.1:-25450532 | MS.gene60207:CDS |
| CAGGTGGACATTATAGGAGT+TGG | 0.509259 | 8.1:-25449609 | MS.gene60207:CDS |
| CTACCCTGGGAGAATTTGGT+TGG | 0.510007 | 8.1:-25450563 | MS.gene60207:CDS |
| GAATGAACAAGTGCTTCATT+TGG | 0.511215 | 8.1:+25449099 | None:intergenic |
| ATGGTTACATCAGGTTGCAC+TGG | 0.512390 | 8.1:-25449129 | MS.gene60207:CDS |
| GACCGCATGGATATCAAAGC+CGG | 0.513956 | 8.1:-25449338 | MS.gene60207:CDS |
| AATGGAAACTGCCTTTGGGT+TGG | 0.518583 | 8.1:-25448792 | MS.gene60207:CDS |
| CATGGTTGCAATTTGGATTG+CGG | 0.521291 | 8.1:+25451165 | None:intergenic |
| CTGAGACAATCTTAGGGACA+TGG | 0.522359 | 8.1:-25449074 | MS.gene60207:CDS |
| TTACATCAGGTTGCACTGGA+TGG | 0.529710 | 8.1:-25449125 | MS.gene60207:CDS |
| TATTATGAGCAAGGTAAGTA+GGG | 0.532830 | 8.1:+25450446 | None:intergenic |
| AAACCAGGAAACTTAGGTAA+AGG | 0.536263 | 8.1:+25448970 | None:intergenic |
| TACATCAGGTTGCACTGGAT+GGG | 0.537898 | 8.1:-25449124 | MS.gene60207:CDS |
| CTTTGAAAAGTGTCATGTCC+CGG | 0.538558 | 8.1:+25449319 | None:intergenic |
| AGAATTTGGTTGGATACTGA+TGG | 0.538862 | 8.1:-25450553 | MS.gene60207:CDS |
| CGCAATCCAAATTGCAACCA+TGG | 0.539159 | 8.1:-25451164 | MS.gene60207:CDS |
| GGTGTTATTGACTTGCTTTG+AGG | 0.541852 | 8.1:+25450709 | None:intergenic |
| TGCCAATAGATAGAAACTCT+TGG | 0.542445 | 8.1:+25448820 | None:intergenic |
| TGGAAATGAGAAGGAAGAGA+AGG | 0.543749 | 8.1:+25450793 | None:intergenic |
| TGGTATGGTGAATATAAAGA+TGG | 0.548966 | 8.1:-25450469 | MS.gene60207:CDS |
| AAATGAGAAGGAAGAGAAGG+AGG | 0.550677 | 8.1:+25450796 | None:intergenic |
| TCATGTCCATCAACAATCAA+AGG | 0.551449 | 8.1:+25448883 | None:intergenic |
| ATTGGAAATCCATGTGTTGG+TGG | 0.555806 | 8.1:-25449045 | MS.gene60207:CDS |
| AAGCAAGTCAATAACACCAT+TGG | 0.559003 | 8.1:-25450704 | MS.gene60207:CDS |
| ATTCAGCTGAGACAATCTTA+GGG | 0.560376 | 8.1:-25449080 | MS.gene60207:CDS |
| TGAAAGTGACTTACACGAGC+AGG | 0.561123 | 8.1:+25450415 | None:intergenic |
| CTTCTAAGGATCTATGGACC+TGG | 0.567240 | 8.1:-25449578 | MS.gene60207:CDS |
| ATAGGAGAGAATGAATGAGT+TGG | 0.575613 | 8.1:+25451121 | None:intergenic |
| GTTATAATTACTGCTACCCT+GGG | 0.579486 | 8.1:-25450576 | MS.gene60207:CDS |
| GTATCCAACCAAATTCTCCC+AGG | 0.580663 | 8.1:+25450559 | None:intergenic |
| ACCGGTCCATTCAAATACCT+TGG | 0.583019 | 8.1:-25449369 | MS.gene60207:CDS |
| TTGAGATAATCTTCAGTCAA+GGG | 0.584839 | 8.1:+25449234 | None:intergenic |
| ACCAAGGTATTTGAATGGAC+CGG | 0.587941 | 8.1:+25449368 | None:intergenic |
| AGGATGAATGATATTGAAGG+AGG | 0.591474 | 8.1:+25450816 | None:intergenic |
| TTGAATGTGTTCCAACCCAA+AGG | 0.592407 | 8.1:+25448781 | None:intergenic |
| ATTGAGATAATCTTCAGTCA+AGG | 0.592919 | 8.1:+25449233 | None:intergenic |
| GAAAACAATGTAATGCACAT+TGG | 0.594015 | 8.1:-25449258 | MS.gene60207:CDS |
| ACCGCATGGATATCAAAGCC+GGG | 0.595132 | 8.1:-25449337 | MS.gene60207:CDS |
| CGGTCAGCGAAGAGAAGCGC+CGG | 0.596526 | 8.1:-25449181 | MS.gene60207:CDS |
| CATGCGGTCTTTGGCTACCA+AGG | 0.596927 | 8.1:+25449352 | None:intergenic |
| GCATTCAGTGATACTCCTAC+CGG | 0.598208 | 8.1:-25449387 | MS.gene60207:CDS |
| CCAATGAAGACTATAGGGAA+AGG | 0.603987 | 8.1:-25450610 | MS.gene60207:CDS |
| TACCTTGCTCATAATAACAA+AGG | 0.607221 | 8.1:-25450439 | MS.gene60207:CDS |
| ACACAAAGGAACATATTACA+TGG | 0.610656 | 8.1:-25449148 | MS.gene60207:CDS |
| ATCCTATTCAAGCTCATGGA+GGG | 0.611296 | 8.1:-25450528 | MS.gene60207:CDS |
| CTTGGTAGCCAAAGACCGCA+TGG | 0.613799 | 8.1:-25449351 | MS.gene60207:CDS |
| AAACAAGAAAGTATGTGATG+TGG | 0.618490 | 8.1:-25449455 | MS.gene60207:CDS |
| TGAGACAATCTTAGGGACAT+GGG | 0.620421 | 8.1:-25449073 | MS.gene60207:CDS |
| TCCAAGAATTCATCAACCAA+TGG | 0.620834 | 8.1:+25450688 | None:intergenic |
| ATCACTGAATGCTATGCCGA+CGG | 0.621301 | 8.1:+25449398 | None:intergenic |
| TGGAGTTGATGGAAATGAGA+AGG | 0.629494 | 8.1:+25450784 | None:intergenic |
| ACAATTGGAAATCCATGTGT+TGG | 0.635790 | 8.1:-25449048 | MS.gene60207:CDS |
| TGGTTTGTTTATCTTCATGG+CGG | 0.648154 | 8.1:-25448953 | MS.gene60207:CDS |
| TATTGTTGAGTAGTCAACCA+TGG | 0.662866 | 8.1:+25451147 | None:intergenic |
| AGTGAATGTCATCAAACCCG+AGG | 0.663758 | 8.1:-25451198 | None:intergenic |
| AGGTATTTGAATGGACCGGT+AGG | 0.664578 | 8.1:+25449372 | None:intergenic |
| GTGAATGTCATCAAACCCGA+GGG | 0.664885 | 8.1:-25451197 | None:intergenic |
| TATCCAACCAAATTCTCCCA+GGG | 0.669311 | 8.1:+25450560 | None:intergenic |
| CCGGCTATGTTCAAACACAA+AGG | 0.678714 | 8.1:-25449162 | MS.gene60207:CDS |
| AATTACGCAAAAGCTTCCGT+CGG | 0.686419 | 8.1:-25449414 | MS.gene60207:CDS |
| AATCCTATTCAAGCTCATGG+AGG | 0.687704 | 8.1:-25450529 | MS.gene60207:CDS |
| GCCATGAAGATAAACAAACC+AGG | 0.690008 | 8.1:+25448955 | None:intergenic |
| TCCCGGCTTTGATATCCATG+CGG | 0.711426 | 8.1:+25449336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCAAATACTTATTAT+TGG | - | chr8.1:25449481-25449500 | MS.gene60207:CDS | 10.0% |
| !! | GTAAAATGTAAGTTATAATA+AGG | + | chr8.1:25449775-25449794 | None:intergenic | 15.0% |
| !! | ATGAAAAGAACATTTGATAT+GGG | + | chr8.1:25449917-25449936 | None:intergenic | 20.0% |
| !! | TAACATACTTCTATAACAAA+AGG | + | chr8.1:25449797-25449816 | None:intergenic | 20.0% |
| !! | TATGTCACTAGTAATAATAT+GGG | - | chr8.1:25449080-25449099 | MS.gene60207:CDS | 20.0% |
| !! | TCAAATACTTATTATTGGTA+TGG | - | chr8.1:25449486-25449505 | MS.gene60207:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATTCAATC+AGG | - | chr8.1:25449846-25449865 | MS.gene60207:intron | 20.0% |
| !!! | TTAAGTTGTTTATTCAATCA+GGG | - | chr8.1:25449847-25449866 | MS.gene60207:intron | 20.0% |
| !!! | TTCTCATTGTAAATAACTTT+TGG | + | chr8.1:25450496-25450515 | None:intergenic | 20.0% |
| ! | AACCATAAGAAACTTTGAAT+TGG | + | chr8.1:25449940-25449959 | None:intergenic | 25.0% |
| ! | ATATGGGGTTTATTAATCTT+AGG | - | chr8.1:25449096-25449115 | MS.gene60207:CDS | 25.0% |
| ! | ATCCAATTCAAAGTTTCTTA+TGG | - | chr8.1:25449935-25449954 | MS.gene60207:intron | 25.0% |
| ! | ATGTCACTAGTAATAATATG+GGG | - | chr8.1:25449081-25449100 | MS.gene60207:CDS | 25.0% |
| ! | CCAAAAACTTCAATTGATAA+TGG | + | chr8.1:25450160-25450179 | None:intergenic | 25.0% |
| ! | CTATCTATTGGCATAAAAAA+TGG | - | chr8.1:25451160-25451179 | MS.gene60207:CDS | 25.0% |
| ! | CTATGTCACTAGTAATAATA+TGG | - | chr8.1:25449079-25449098 | MS.gene60207:CDS | 25.0% |
| ! | GATGAAAAGAACATTTGATA+TGG | + | chr8.1:25449918-25449937 | None:intergenic | 25.0% |
| ! | GGAAATTGTATTTGTTTCAT+AGG | - | chr8.1:25450183-25450202 | MS.gene60207:intron | 25.0% |
| ! | TAAGAGATTCAAGATATGTT+TGG | - | chr8.1:25451061-25451080 | MS.gene60207:intron | 25.0% |
| !! | ATCAAATGCAAATACTGTTT+TGG | - | chr8.1:25450301-25450320 | MS.gene60207:intron | 25.0% |
| !! | CCATTATCAATTGAAGTTTT+TGG | - | chr8.1:25450157-25450176 | MS.gene60207:intron | 25.0% |
| !!! | AAAACTTCAATTGATAATGG+TGG | + | chr8.1:25450157-25450176 | None:intergenic | 25.0% |
| !!! | ATGGTTTTGATAACACATTT+TGG | - | chr8.1:25451127-25451146 | MS.gene60207:CDS | 25.0% |
| !!! | CTTATTTTTATAAGCTCTTC+AGG | - | chr8.1:25449733-25449752 | MS.gene60207:intron | 25.0% |
| AAAAAATGGAAACTGCCTTT+GGG | - | chr8.1:25451174-25451193 | MS.gene60207:CDS | 30.0% | |
| AAAGCATATACACATGTCAT+AGG | + | chr8.1:25449704-25449723 | None:intergenic | 30.0% | |
| ACACAAAGGAACATATTACA+TGG | - | chr8.1:25450822-25450841 | MS.gene60207:CDS | 30.0% | |
| ACATATTACATGGTTACATC+AGG | - | chr8.1:25450832-25450851 | MS.gene60207:CDS | 30.0% | |
| ATAAACAAACCAGGAAACTT+AGG | + | chr8.1:25451009-25451028 | None:intergenic | 30.0% | |
| ATTGAGATAATCTTCAGTCA+AGG | + | chr8.1:25450740-25450759 | None:intergenic | 30.0% | |
| ATTGATCCAATGAAGACTAT+AGG | - | chr8.1:25449354-25449373 | MS.gene60207:CDS | 30.0% | |
| CTTATCTACTGACATGAATA+CGG | - | chr8.1:25449646-25449665 | MS.gene60207:intron | 30.0% | |
| GAAAACAATGTAATGCACAT+TGG | - | chr8.1:25450712-25450731 | MS.gene60207:CDS | 30.0% | |
| TAAAAAATGGAAACTGCCTT+TGG | - | chr8.1:25451173-25451192 | MS.gene60207:CDS | 30.0% | |
| TACCTTGCTCATAATAACAA+AGG | - | chr8.1:25449531-25449550 | MS.gene60207:CDS | 30.0% | |
| TATTATGAGCAAGGTAAGTA+GGG | + | chr8.1:25449527-25449546 | None:intergenic | 30.0% | |
| TGGTATGGTGAATATAAAGA+TGG | - | chr8.1:25449501-25449520 | MS.gene60207:CDS | 30.0% | |
| TTATCTACTGACATGAATAC+GGG | - | chr8.1:25449647-25449666 | MS.gene60207:intron | 30.0% | |
| TTATTATGAGCAAGGTAAGT+AGG | + | chr8.1:25449528-25449547 | None:intergenic | 30.0% | |
| TTGAGATAATCTTCAGTCAA+GGG | + | chr8.1:25450739-25450758 | None:intergenic | 30.0% | |
| TTGATCCAATGAAGACTATA+GGG | - | chr8.1:25449355-25449374 | MS.gene60207:CDS | 30.0% | |
| TTGCAACGAAAATTCGTAAT+TGG | + | chr8.1:25449039-25449058 | None:intergenic | 30.0% | |
| TTTGTTTCATAGGACTAATG+TGG | - | chr8.1:25450193-25450212 | MS.gene60207:intron | 30.0% | |
| ! | AAACAAGAAAGTATGTGATG+TGG | - | chr8.1:25450515-25450534 | MS.gene60207:CDS | 30.0% |
| ! | GTCATGAAAAGAATTTTCGT+CGG | - | chr8.1:25450769-25450788 | MS.gene60207:CDS | 30.0% |
| ! | TGAGATATAGACTAGAGTTT+TGG | + | chr8.1:25450327-25450346 | None:intergenic | 30.0% |
| !!! | ATCAATTGAAGTTTTTGGCA+GGG | - | chr8.1:25450162-25450181 | MS.gene60207:intron | 30.0% |
| !!! | TACAATACCTTCTTTTTTCC+AGG | + | chr8.1:25450413-25450432 | None:intergenic | 30.0% |
| !!! | TATCAATTGAAGTTTTTGGC+AGG | - | chr8.1:25450161-25450180 | MS.gene60207:intron | 30.0% |
| !!! | TCAATAGCACTTGTTTTATG+AGG | + | chr8.1:25449339-25449358 | None:intergenic | 30.0% |
| AAACCAGGAAACTTAGGTAA+AGG | + | chr8.1:25451003-25451022 | None:intergenic | 35.0% | |
| AAGCAAGTCAATAACACCAT+TGG | - | chr8.1:25449266-25449285 | MS.gene60207:CDS | 35.0% | |
| ACAATTGGAAATCCATGTGT+TGG | - | chr8.1:25450922-25450941 | MS.gene60207:intron | 35.0% | |
| AGAATTTGGTTGGATACTGA+TGG | - | chr8.1:25449417-25449436 | MS.gene60207:CDS | 35.0% | |
| AGACATTGGAATTGCTCAAT+TGG | + | chr8.1:25450106-25450125 | None:intergenic | 35.0% | |
| AGGAGGATGAATGATATTGA+AGG | + | chr8.1:25449160-25449179 | None:intergenic | 35.0% | |
| AGGATGAATGATATTGAAGG+AGG | + | chr8.1:25449157-25449176 | None:intergenic | 35.0% | |
| AGTTATAATTACTGCTACCC+TGG | - | chr8.1:25449393-25449412 | MS.gene60207:CDS | 35.0% | |
| ATAGGAGAGAATGAATGAGT+TGG | + | chr8.1:25448852-25448871 | None:intergenic | 35.0% | |
| ATTCAGCTGAGACAATCTTA+GGG | - | chr8.1:25450890-25450909 | MS.gene60207:intron | 35.0% | |
| ATTCTCTCCTATAAAGTTCC+AGG | - | chr8.1:25448860-25448879 | MS.gene60207:CDS | 35.0% | |
| CTTGAATCTCTTAACTCACT+TGG | + | chr8.1:25451054-25451073 | None:intergenic | 35.0% | |
| GAAGATCAAGCACTTCAATA+TGG | - | chr8.1:25451108-25451127 | MS.gene60207:intron | 35.0% | |
| GAATGAACAAGTGCTTCATT+TGG | + | chr8.1:25450874-25450893 | None:intergenic | 35.0% | |
| GTTATAATTACTGCTACCCT+GGG | - | chr8.1:25449394-25449413 | MS.gene60207:CDS | 35.0% | |
| TAGTTCAGAACTCAAGACAT+TGG | + | chr8.1:25450120-25450139 | None:intergenic | 35.0% | |
| TATAAACTCCTACAACCAAC+TGG | + | chr8.1:25449885-25449904 | None:intergenic | 35.0% | |
| TATTGTTGAGTAGTCAACCA+TGG | + | chr8.1:25448826-25448845 | None:intergenic | 35.0% | |
| TCATGTCCATCAACAATCAA+AGG | + | chr8.1:25451090-25451109 | None:intergenic | 35.0% | |
| TCCAAGAATTCATCAACCAA+TGG | + | chr8.1:25449285-25449304 | None:intergenic | 35.0% | |
| TGCCAATAGATAGAAACTCT+TGG | + | chr8.1:25451153-25451172 | None:intergenic | 35.0% | |
| TGTAGAGCTTGAGAAAAATG+AGG | - | chr8.1:25448992-25449011 | MS.gene60207:CDS | 35.0% | |
| ! | AGTTCTCCTTTTCAACTTGT+TGG | + | chr8.1:25449209-25449228 | None:intergenic | 35.0% |
| ! | AGTTGGTTGCTATTCTTCTA+AGG | - | chr8.1:25450378-25450397 | MS.gene60207:intron | 35.0% |
| ! | GCTATTCTTCTAAGGATCTA+TGG | - | chr8.1:25450386-25450405 | MS.gene60207:intron | 35.0% |
| ! | TCAACTCCAACAAGTTGAAA+AGG | - | chr8.1:25449200-25449219 | MS.gene60207:CDS | 35.0% |
| !! | ACCATTGGTTGATGAATTCT+TGG | - | chr8.1:25449281-25449300 | MS.gene60207:CDS | 35.0% |
| !! | ATTTTGTTTCCACCAACACA+TGG | + | chr8.1:25450937-25450956 | None:intergenic | 35.0% |
| !! | GTCCTTTGTTATTATGAGCA+AGG | + | chr8.1:25449536-25449555 | None:intergenic | 35.0% |
| !! | TCAATTGATAATGGTGGTGA+TGG | + | chr8.1:25450151-25450170 | None:intergenic | 35.0% |
| !! | TCCTGGTTTGTTTATCTTCA+TGG | - | chr8.1:25451014-25451033 | MS.gene60207:intron | 35.0% |
| !! | TGGTTTGTTTATCTTCATGG+CGG | - | chr8.1:25451017-25451036 | MS.gene60207:intron | 35.0% |
| !! | TTTCAACTTGTTGGAGTTGA+TGG | + | chr8.1:25449200-25449219 | None:intergenic | 35.0% |
| AAATGAGAAGGAAGAGAAGG+AGG | + | chr8.1:25449177-25449196 | None:intergenic | 40.0% | |
| AATCCTATTCAAGCTCATGG+AGG | - | chr8.1:25449441-25449460 | MS.gene60207:CDS | 40.0% | |
| AATTACGCAAAAGCTTCCGT+CGG | - | chr8.1:25450556-25450575 | MS.gene60207:CDS | 40.0% | |
| ACACTCACCTGGAACTTTAT+AGG | + | chr8.1:25448870-25448889 | None:intergenic | 40.0% | |
| ACATGTCTAGATAGCTAGCT+TGG | + | chr8.1:25450062-25450081 | None:intergenic | 40.0% | |
| AGTCAACCATGGTTGCAATT+TGG | + | chr8.1:25448815-25448834 | None:intergenic | 40.0% | |
| ATCCTATTCAAGCTCATGGA+GGG | - | chr8.1:25449442-25449461 | MS.gene60207:CDS | 40.0% | |
| ATTGGAAATCCATGTGTTGG+TGG | - | chr8.1:25450925-25450944 | MS.gene60207:intron | 40.0% | |
| CATGGTTGCAATTTGGATTG+CGG | + | chr8.1:25448808-25448827 | None:intergenic | 40.0% | |
| CATTCAGCTGAGACAATCTT+AGG | - | chr8.1:25450889-25450908 | MS.gene60207:intron | 40.0% | |
| CCAATGAAGACTATAGGGAA+AGG | - | chr8.1:25449360-25449379 | MS.gene60207:CDS | 40.0% | |
| CCTTTCCCTATAGTCTTCAT+TGG | + | chr8.1:25449363-25449382 | None:intergenic | 40.0% | |
| CCTTTGTGTTTGAACATAGC+CGG | + | chr8.1:25450811-25450830 | None:intergenic | 40.0% | |
| CTATGGACCTGGAAAAAAGA+AGG | - | chr8.1:25450403-25450422 | MS.gene60207:intron | 40.0% | |
| CTTCCTTTACCTAAGTTTCC+TGG | - | chr8.1:25450997-25451016 | MS.gene60207:intron | 40.0% | |
| GCCATGAAGATAAACAAACC+AGG | + | chr8.1:25451018-25451037 | None:intergenic | 40.0% | |
| GGAAATCCTATTCAAGCTCA+TGG | - | chr8.1:25449438-25449457 | MS.gene60207:CDS | 40.0% | |
| GGCCAAGAGTTTCTATCTAT+TGG | - | chr8.1:25451148-25451167 | MS.gene60207:CDS | 40.0% | |
| TATCCAACCAAATTCTCCCA+GGG | + | chr8.1:25449413-25449432 | None:intergenic | 40.0% | |
| TGAGACAATCTTAGGGACAT+GGG | - | chr8.1:25450897-25450916 | MS.gene60207:intron | 40.0% | |
| TGGAAATGAGAAGGAAGAGA+AGG | + | chr8.1:25449180-25449199 | None:intergenic | 40.0% | |
| TGGTTGCCTTTGATTGTTGA+TGG | - | chr8.1:25451081-25451100 | MS.gene60207:intron | 40.0% | |
| TTAGGGACATGGGAAACAAT+TGG | - | chr8.1:25450907-25450926 | MS.gene60207:intron | 40.0% | |
| TTGAATGTGTTCCAACCCAA+AGG | + | chr8.1:25451192-25451211 | None:intergenic | 40.0% | |
| TTTGATATCCATGCGGTCTT+TGG | + | chr8.1:25450630-25450649 | None:intergenic | 40.0% | |
| ! | ACCAAGGTATTTGAATGGAC+CGG | + | chr8.1:25450605-25450624 | None:intergenic | 40.0% |
| ! | AGCTAGCTTGGGGAAAATAA+GGG | + | chr8.1:25450050-25450069 | None:intergenic | 40.0% |
| ! | ATGTCTAGATAGCTAGCTTG+GGG | + | chr8.1:25450060-25450079 | None:intergenic | 40.0% |
| ! | CATGTCTAGATAGCTAGCTT+GGG | + | chr8.1:25450061-25450080 | None:intergenic | 40.0% |
| ! | TAGCTAGCTTGGGGAAAATA+AGG | + | chr8.1:25450051-25450070 | None:intergenic | 40.0% |
| ! | TGAGGTGACCTCTTTTTGTT+TGG | + | chr8.1:25449246-25449265 | None:intergenic | 40.0% |
| ! | TGGCTACCAAGGTATTTGAA+TGG | + | chr8.1:25450610-25450629 | None:intergenic | 40.0% |
| ! | TTTTGGTCTCTCAAGCACAT+TGG | + | chr8.1:25450479-25450498 | None:intergenic | 40.0% |
| !! | CTTTGAAAAGTGTCATGTCC+CGG | + | chr8.1:25450654-25450673 | None:intergenic | 40.0% |
| !! | GGTGTTATTGACTTGCTTTG+AGG | + | chr8.1:25449264-25449283 | None:intergenic | 40.0% |
| !! | GTGACCTCTTTTTGTTTGGT+GGG | + | chr8.1:25449242-25449261 | None:intergenic | 40.0% |
| !! | TGACCTCTTTTTGTTTGGTG+GGG | + | chr8.1:25449241-25449260 | None:intergenic | 40.0% |
| !! | TGGAGTTGATGGAAATGAGA+AGG | + | chr8.1:25449189-25449208 | None:intergenic | 40.0% |
| !! | TTATCTTCATGGCGGATAGA+TGG | - | chr8.1:25451025-25451044 | MS.gene60207:intron | 40.0% |
| !!! | GTTTCGAGTTTCGACTTTTC+TGG | - | chr8.1:25450957-25450976 | MS.gene60207:CDS | 40.0% |
| AACTCCTACAACCAACTGGT+AGG | + | chr8.1:25449881-25449900 | None:intergenic | 45.0% | |
| AATGGAAACTGCCTTTGGGT+TGG | - | chr8.1:25451178-25451197 | MS.gene60207:CDS | 45.0% | |
| ACCGGTCCATTCAAATACCT+TGG | - | chr8.1:25450601-25450620 | MS.gene60207:CDS | 45.0% | |
| AGACTATCTGAGAGAGCTCA+TGG | - | chr8.1:25449672-25449691 | MS.gene60207:intron | 45.0% | |
| AGGTATTTGAATGGACCGGT+AGG | + | chr8.1:25450601-25450620 | None:intergenic | 45.0% | |
| ATCACTGAATGCTATGCCGA+CGG | + | chr8.1:25450575-25450594 | None:intergenic | 45.0% | |
| CAGGTGGACATTATAGGAGT+TGG | - | chr8.1:25450361-25450380 | MS.gene60207:intron | 45.0% | |
| CATTAGAAGACACACTCACC+TGG | + | chr8.1:25448881-25448900 | None:intergenic | 45.0% | |
| CCGGCTATGTTCAAACACAA+AGG | - | chr8.1:25450808-25450827 | MS.gene60207:CDS | 45.0% | |
| CGCAATCCAAATTGCAACCA+TGG | - | chr8.1:25448806-25448825 | MS.gene60207:CDS | 45.0% | |
| CTCCATCAGGTGGACATTAT+AGG | - | chr8.1:25450355-25450374 | MS.gene60207:intron | 45.0% | |
| CTCCTATAATGTCCACCTGA+TGG | + | chr8.1:25450360-25450379 | None:intergenic | 45.0% | |
| CTGAGACAATCTTAGGGACA+TGG | - | chr8.1:25450896-25450915 | MS.gene60207:intron | 45.0% | |
| GCATTCAGTGATACTCCTAC+CGG | - | chr8.1:25450583-25450602 | MS.gene60207:CDS | 45.0% | |
| GTATCCAACCAAATTCTCCC+AGG | + | chr8.1:25449414-25449433 | None:intergenic | 45.0% | |
| TCTCACAATGTCTCTCCATC+AGG | - | chr8.1:25450342-25450361 | MS.gene60207:intron | 45.0% | |
| TGAAAGTGACTTACACGAGC+AGG | + | chr8.1:25449558-25449577 | None:intergenic | 45.0% | |
| ! | AATTTTCGTTGCAACGCTGG+AGG | - | chr8.1:25449045-25449064 | MS.gene60207:CDS | 45.0% |
| ! | ACGAATTTTCGTTGCAACGC+TGG | - | chr8.1:25449042-25449061 | MS.gene60207:CDS | 45.0% |
| ! | ATGGTTACATCAGGTTGCAC+TGG | - | chr8.1:25450841-25450860 | MS.gene60207:CDS | 45.0% |
| ! | CTTCTAAGGATCTATGGACC+TGG | - | chr8.1:25450392-25450411 | MS.gene60207:intron | 45.0% |
| ! | GACGGAAGCTTTTGCGTAAT+TGG | + | chr8.1:25450557-25450576 | None:intergenic | 45.0% |
| ! | TACATCAGGTTGCACTGGAT+GGG | - | chr8.1:25450846-25450865 | MS.gene60207:CDS | 45.0% |
| ! | TTACATCAGGTTGCACTGGA+TGG | - | chr8.1:25450845-25450864 | MS.gene60207:CDS | 45.0% |
| !! | ACCTCTTTTTGTTTGGTGGG+GGG | + | chr8.1:25449239-25449258 | None:intergenic | 45.0% |
| !! | GACCTCTTTTTGTTTGGTGG+GGG | + | chr8.1:25449240-25449259 | None:intergenic | 45.0% |
| !! | GGTGACCTCTTTTTGTTTGG+TGG | + | chr8.1:25449243-25449262 | None:intergenic | 45.0% |
| !! | TTTTGTTTGGTGGGGGGATT+TGG | + | chr8.1:25449233-25449252 | None:intergenic | 45.0% |
| ACCGCATGGATATCAAAGCC+GGG | - | chr8.1:25450633-25450652 | MS.gene60207:CDS | 50.0% | |
| ACTGCTACCCTGGGAGAATT+TGG | - | chr8.1:25449403-25449422 | MS.gene60207:CDS | 50.0% | |
| CACAATGTCTCTCCATCAGG+TGG | - | chr8.1:25450345-25450364 | MS.gene60207:intron | 50.0% | |
| CACCCTCCATGAGCTTGAAT+AGG | + | chr8.1:25449447-25449466 | None:intergenic | 50.0% | |
| CTACCCTGGGAGAATTTGGT+TGG | - | chr8.1:25449407-25449426 | MS.gene60207:CDS | 50.0% | |
| GACCGCATGGATATCAAAGC+CGG | - | chr8.1:25450632-25450651 | MS.gene60207:CDS | 50.0% | |
| GCATCCTACCAGTTGGTTGT+AGG | - | chr8.1:25449874-25449893 | MS.gene60207:intron | 50.0% | |
| TCCCCCCACCAAACAAAAAG+AGG | - | chr8.1:25449235-25449254 | MS.gene60207:CDS | 50.0% | |
| ! | ATTGCGGATTGATCTGCCCT+CGG | + | chr8.1:25448792-25448811 | None:intergenic | 50.0% |
| ! | TCCCGGCTTTGATATCCATG+CGG | + | chr8.1:25450637-25450656 | None:intergenic | 50.0% |
| CATGCGGTCTTTGGCTACCA+AGG | + | chr8.1:25450621-25450640 | None:intergenic | 55.0% | |
| GGGCTAAGCATCCTACCAGT+TGG | - | chr8.1:25449867-25449886 | MS.gene60207:intron | 55.0% | |
| ! | CTTGGTAGCCAAAGACCGCA+TGG | - | chr8.1:25450619-25450638 | MS.gene60207:CDS | 55.0% |
| ! | TTGCGGATTGATCTGCCCTC+GGG | + | chr8.1:25448791-25448810 | None:intergenic | 55.0% |
| ! | CGGTCAGCGAAGAGAAGCGC+CGG | - | chr8.1:25450789-25450808 | MS.gene60207:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25448777 | 25451215 | 25448777 | ID=MS.gene60207 |
| chr8.1 | mRNA | 25448777 | 25451215 | 25448777 | ID=MS.gene60207.t1;Parent=MS.gene60207 |
| chr8.1 | exon | 25451111 | 25451215 | 25451111 | ID=MS.gene60207.t1.exon1;Parent=MS.gene60207.t1 |
| chr8.1 | CDS | 25451111 | 25451215 | 25451111 | ID=cds.MS.gene60207.t1;Parent=MS.gene60207.t1 |
| chr8.1 | exon | 25450926 | 25450995 | 25450926 | ID=MS.gene60207.t1.exon2;Parent=MS.gene60207.t1 |
| chr8.1 | CDS | 25450926 | 25450995 | 25450926 | ID=cds.MS.gene60207.t1;Parent=MS.gene60207.t1 |
| chr8.1 | exon | 25450429 | 25450874 | 25450429 | ID=MS.gene60207.t1.exon3;Parent=MS.gene60207.t1 |
| chr8.1 | CDS | 25450429 | 25450874 | 25450429 | ID=cds.MS.gene60207.t1;Parent=MS.gene60207.t1 |
| chr8.1 | exon | 25448777 | 25449628 | 25448777 | ID=MS.gene60207.t1.exon4;Parent=MS.gene60207.t1 |
| chr8.1 | CDS | 25448777 | 25449628 | 25448777 | ID=cds.MS.gene60207.t1;Parent=MS.gene60207.t1 |
| Gene Sequence |
| Protein sequence |
