AlfalfaGEDB | MS.gene60978

M. sativa cultivar XinJiangDaYe / MS.gene60978

KEGG: K12493
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60978.t1	XP_013446052.1	83	188	32	0	1	188	78	265	2.80E-65	258.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60978.t1	Q8H100	50.3	193	83	4	1	187	81	266	1.7e-39	164.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60978.t1	G7LHQ5	83.0	188	32	0	1	188	78	265	2.0e-65	258.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene60978	0.839171	1.86E-57	-1.69E-46
MS.gene050084	MS.gene60978	0.840273	9.60E-58	-1.69E-46
MS.gene050085	MS.gene60978	0.865668	5.00E-65	-1.69E-46
MS.gene050359	MS.gene60978	0.840304	9.42E-58	-1.69E-46
MS.gene050386	MS.gene60978	0.804916	1.72E-49	-1.69E-46
MS.gene050551	MS.gene60978	0.842278	2.85E-58	-1.69E-46
MS.gene050646	MS.gene60978	0.838261	3.20E-57	-1.69E-46
MS.gene050689	MS.gene60978	0.855378	6.57E-62	-1.69E-46
MS.gene050838	MS.gene60978	0.848941	4.45E-60	-1.69E-46
MS.gene050931	MS.gene60978	0.81124	7.73E-51	-1.69E-46

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60978.t1	MTR_8g067080	96.316	190	5	2	1	189	78	266	1.63e-126	363
MS.gene60978.t1	MTR_8g067080	96.316	190	5	2	1	189	78	266	1.86e-126	363
MS.gene60978.t1	MTR_8g471110	96.316	190	5	2	1	189	78	266	1.86e-126	363
MS.gene60978.t1	MTR_8g067090	65.426	188	56	3	1	188	78	256	3.23e-68	214
MS.gene60978.t1	MTR_8g471120	65.426	188	56	3	1	188	78	256	3.23e-68	214

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60978.t1	AT4G17890	53.368	193	77	4	1	187	81	266	9.72e-58	187
MS.gene60978.t1	AT4G17890	53.368	193	77	4	1	187	81	266	9.84e-58	187
MS.gene60978.t1	AT5G46750	51.099	182	76	6	1	179	78	249	5.41e-49	164
MS.gene60978.t1	AT2G35210	57.823	147	52	5	1	146	78	215	2.67e-43	149
MS.gene60978.t1	AT2G35210	57.823	147	52	5	1	146	78	215	7.71e-43	148

Showing 1 to 5 of 5 entries

Previous1Next

Find 46 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGCTTGATGATGACTT+TGG	0.488401	8.1:-37458148	None:intergenic
AATAATTTGAAGAAGCCTAT+TGG	0.314657	8.1:+37457708	MS.gene60978:CDS
ACTGCAGTATATGAAGCTCT+AGG	0.588166	8.1:-37457681	None:intergenic
ACTGGAGCAGGTAGTTCTTC+AGG	0.365053	8.1:-37457991	None:intergenic
AGCAGCAGGTGGTGCAGACA+AGG	0.494559	8.1:-37457541	None:intergenic
AGCCCGTAAGCTCACTAGAA+AGG	0.562686	8.1:+37457764	MS.gene60978:CDS
AGGAAGTCCATTAGCCCCTT+GGG	0.475467	8.1:-37457577	None:intergenic
AGTTGCTAAAAGTATGTCTG+AGG	0.630145	8.1:+37457512	MS.gene60978:CDS
ATACCTTTCTAGTGAGCTTA+CGG	0.393241	8.1:-37457767	None:intergenic
CAACTTAAAATGATGAGCTT+TGG	0.368238	8.1:+37457372	None:intergenic

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAAAACAACTTGCCTTC+TGG	+	chr8.1:37458030-37458049	MS.gene60978:CDS	35.0%
CAAAAAACAACTTGCCTTCT+GGG	+	chr8.1:37458031-37458050	MS.gene60978:CDS	35.0%
CAAGATACTGATGAACCAAA+AGG	-	chr8.1:37457833-37457852	None:intergenic	35.0%
GCTTCATTTGTCTTAACATC+AGG	-	chr8.1:37457600-37457619	None:intergenic	35.0%
GTAATTGTCGATGATGAAAC+TGG	-	chr8.1:37458012-37458031	None:intergenic	35.0%
GTATAAGCAACTGCTTTCAA+AGG	+	chr8.1:37457488-37457507	MS.gene60978:CDS	35.0%
AAAAAAACTGGTAAGAGCGG+GGG	+	chr8.1:37457735-37457754	MS.gene60978:CDS	40.0%
ACTGCAGTATATGAAGCTCT+AGG	-	chr8.1:37457684-37457703	None:intergenic	40.0%
CAAAAAAACTGGTAAGAGCG+GGG	+	chr8.1:37457734-37457753	MS.gene60978:CDS	40.0%
CAGGATTCAACTCAGATGAT+TGG	-	chr8.1:37458095-37458114	None:intergenic	40.0%

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	37457384	37458191	37457384	ID=MS.gene60978
chr8.1	mRNA	37457384	37458191	37457384	ID=MS.gene60978.t1;Parent=MS.gene60978
chr8.1	exon	37457384	37457785	37457384	ID=MS.gene60978.t1.exon1;Parent=MS.gene60978.t1
chr8.1	CDS	37457384	37457785	37457384	ID=cds.MS.gene60978.t1;Parent=MS.gene60978.t1
chr8.1	exon	37457964	37458191	37457964	ID=MS.gene60978.t1.exon2;Parent=MS.gene60978.t1
chr8.1	CDS	37457964	37458191	37457964	ID=cds.MS.gene60978.t1;Parent=MS.gene60978.t1

Gene Sequence

>MS.gene60978

ATGAGCTTTGGAGGAAACAGTAGGGCACAAGTTTTCTTTAGGCAGCATGGATGGAACGGAGATGGTAAAGTAGAGGCAAAGTATACATCCAGAGCTGCAGAGTTGTATAAGCAACTGCTTTCAAAGGAAGTTGCTAAAAGTATGTCTGAGGAGGCTGCCTTGTCTGCACCACCTGCTGCTTCTTCTCAGTCTGCCCAAGGGGCTAATGGACTTCCTGATGTTAAGACAAATGAAGCCCCAATTGAAACTGTGGAAAAAACCGTGGAGAAGCCAGAAAAGACCGAGAGCACTTCTTCACCTAGAGCTTCATATACTGCAGTTTCGAATAATTTGAAGAAGCCTATTGGAGCCAAAAAAACTGGTAAGAGCGGGGGGCTTGGAGCCCGTAAGCTCACTAGAAAGGTATGCAAATAGTTATCTTTGATTAAAGATTGTTACAGAAAGTTCCTTTTGGTTCATCAGTATCTTGTTCTCTATTTTAATTTGGTGATATAAAATTTAACTGGTTATTTTTTGTATGTTCTCTATTTTAATTTGGTGATATAAAATTTTAACCAGTTATTATCATAATGCAATGCAGCCAAGTGAGTCCCTCTATGAGCAGAAGCCTGAAGAACTACCTGCTCCAGTTTCATCATCGACAATTACAAAAAACAACTTGCCTTCTGGGCCACCTCTAACATCTCGGTTTGAGTATACAGAAGATGTCCAATCATCTGAGTTGAATCCTGGAGGTTCTAATTGTAACCGGTCACGTGTCTGTACCAAAGTCATCATCAAGCTTCTTTTCGGACTTCGGAATGGATAG

Protein sequence

>MS.gene60978.t1

MSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAAELYKQLLSKEVAKSMSEEAALSAPPAASSQSAQGANGLPDVKTNEAPIETVEKTVEKPEKTESTSSPRASYTAVSNNLKKPIGAKKTGKSGGLGARKLTRKPSESLYEQKPEELPAPVSSSTITKNNLPSGPPLTSRFEYTEDVQSSELNPGGSNCNRSRVCTKVIIKLLFGLRNG