Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057131.t1 | XP_013461436.1 | 94.6 | 706 | 34 | 1 | 1 | 706 | 1 | 702 | 0.00E+00 | 1231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057131.t1 | Q9XSC3 | 29.7 | 454 | 266 | 17 | 226 | 665 | 483 | 897 | 9.5e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057131.t1 | A0A072V1A7 | 94.6 | 706 | 34 | 1 | 1 | 706 | 1 | 702 | 0.0e+00 | 1231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene057131 | 0.832526 | 8.99E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene057131 | 0.842311 | 2.79E-58 | -1.69E-46 |
| MS.gene050384 | MS.gene057131 | 0.805527 | 1.28E-49 | -1.69E-46 |
| MS.gene050386 | MS.gene057131 | 0.805763 | 1.14E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene057131 | 0.822975 | 1.78E-53 | -1.69E-46 |
| MS.gene051382 | MS.gene057131 | 0.804707 | 1.90E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene057131 | 0.802988 | 4.32E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene058292 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene057131 | MS.gene059007 | 0.817866 | 2.64E-52 | -1.69E-46 |
| MS.gene057131 | MS.gene06679 | 0.932496 | 7.81E-95 | -1.69E-46 |
| MS.gene057131 | MS.gene06740 | 0.824296 | 8.72E-54 | -1.69E-46 |
| MS.gene057131 | MS.gene06891 | 0.943638 | 8.38E-103 | -1.69E-46 |
| MS.gene057131 | MS.gene06946 | 0.810094 | 1.37E-50 | -1.69E-46 |
| MS.gene057131 | MS.gene06958 | 0.825 | 5.95E-54 | -1.69E-46 |
| MS.gene057131 | MS.gene072740 | 0.804751 | 1.86E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene07510 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene09870 | 0.827092 | 1.89E-54 | -1.69E-46 |
| MS.gene057131 | MS.gene21651 | 0.812083 | 5.07E-51 | -1.69E-46 |
| MS.gene057131 | MS.gene22321 | 0.802503 | 5.44E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene24677 | 0.803673 | 3.12E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene26396 | 0.810825 | 9.51E-51 | -1.69E-46 |
| MS.gene057131 | MS.gene27287 | 0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene057131 | MS.gene28924 | 0.800292 | 1.54E-48 | -1.69E-46 |
| MS.gene057131 | MS.gene36291 | 0.803726 | 3.04E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene39874 | 0.808657 | 2.78E-50 | -1.69E-46 |
| MS.gene057131 | MS.gene47581 | 0.800994 | 1.11E-48 | -1.69E-46 |
| MS.gene057131 | MS.gene48283 | 0.800429 | 1.45E-48 | -1.69E-46 |
| MS.gene057131 | MS.gene51929 | 0.801158 | 1.03E-48 | -1.69E-46 |
| MS.gene057131 | MS.gene54158 | 0.802826 | 4.67E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene54646 | 0.817631 | 2.98E-52 | -1.69E-46 |
| MS.gene057131 | MS.gene60978 | 0.823861 | 1.10E-53 | -1.69E-46 |
| MS.gene057131 | MS.gene63930 | 0.807496 | 4.91E-50 | -1.69E-46 |
| MS.gene057131 | MS.gene64734 | 0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene67010 | 0.803982 | 2.69E-49 | -1.69E-46 |
| MS.gene057131 | MS.gene93728 | 0.807785 | 4.26E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070507 | MS.gene057131 | PPI |
| MS.gene070492 | MS.gene057131 | PPI |
| MS.gene003811 | MS.gene057131 | PPI |
| MS.gene016742 | MS.gene057131 | PPI |
| MS.gene070510 | MS.gene057131 | PPI |
| MS.gene81622 | MS.gene057131 | PPI |
| MS.gene057131 | MS.gene45734 | PPI |
| MS.gene016743 | MS.gene057131 | PPI |
| MS.gene37911 | MS.gene057131 | PPI |
| MS.gene057884 | MS.gene057131 | PPI |
| MS.gene057131 | MS.gene070511 | PPI |
| MS.gene057883 | MS.gene057131 | PPI |
| MS.gene016758 | MS.gene057131 | PPI |
| MS.gene057131 | MS.gene40671 | PPI |
| MS.gene81617 | MS.gene057131 | PPI |
| MS.gene057886 | MS.gene057131 | PPI |
| MS.gene070509 | MS.gene057131 | PPI |
| MS.gene070503 | MS.gene057131 | PPI |
| MS.gene057131 | MS.gene056653 | PPI |
| MS.gene057131 | MS.gene67840 | PPI |
| MS.gene81620 | MS.gene057131 | PPI |
| MS.gene070505 | MS.gene057131 | PPI |
| MS.gene81615 | MS.gene057131 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057131.t1 | MTR_3g491920 | 95.042 | 706 | 31 | 1 | 1 | 706 | 1 | 702 | 0.0 | 1352 |
| MS.gene057131.t1 | MTR_1g007740 | 61.433 | 726 | 239 | 14 | 1 | 704 | 1 | 707 | 0.0 | 843 |
| MS.gene057131.t1 | MTR_8g100005 | 43.370 | 724 | 364 | 15 | 11 | 706 | 9 | 714 | 0.0 | 545 |
| MS.gene057131.t1 | MTR_8g092890 | 38.152 | 671 | 328 | 16 | 47 | 704 | 47 | 643 | 2.53e-126 | 389 |
| MS.gene057131.t1 | MTR_2g079740 | 42.468 | 551 | 251 | 13 | 199 | 706 | 331 | 858 | 1.82e-124 | 391 |
| MS.gene057131.t1 | MTR_3g095780 | 43.892 | 483 | 243 | 7 | 226 | 704 | 168 | 626 | 3.68e-116 | 363 |
| MS.gene057131.t1 | MTR_8g100005 | 41.273 | 487 | 252 | 10 | 11 | 471 | 9 | 487 | 3.22e-110 | 343 |
| MS.gene057131.t1 | MTR_7g060420 | 46.565 | 393 | 193 | 6 | 207 | 589 | 379 | 764 | 3.84e-92 | 309 |
| MS.gene057131.t1 | MTR_4g119620 | 29.075 | 227 | 145 | 9 | 344 | 563 | 66 | 283 | 2.15e-19 | 90.5 |
| MS.gene057131.t1 | MTR_4g119620 | 27.350 | 234 | 140 | 9 | 244 | 465 | 19 | 234 | 1.32e-12 | 70.1 |
| MS.gene057131.t1 | MTR_1g072140 | 25.833 | 240 | 158 | 8 | 331 | 563 | 48 | 274 | 1.39e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057131.t1 | AT5G24320 | 46.814 | 722 | 319 | 16 | 11 | 706 | 12 | 694 | 0.0 | 592 |
| MS.gene057131.t1 | AT5G24320 | 46.832 | 726 | 317 | 17 | 11 | 706 | 12 | 698 | 0.0 | 592 |
| MS.gene057131.t1 | AT5G53500 | 47.001 | 717 | 302 | 15 | 1 | 704 | 1 | 652 | 0.0 | 580 |
| MS.gene057131.t1 | AT5G53500 | 47.001 | 717 | 302 | 15 | 1 | 704 | 1 | 652 | 0.0 | 580 |
| MS.gene057131.t1 | AT5G42010 | 48.496 | 532 | 240 | 13 | 192 | 706 | 195 | 709 | 4.04e-163 | 487 |
| MS.gene057131.t1 | AT1G64610 | 49.432 | 528 | 217 | 14 | 190 | 706 | 159 | 647 | 1.01e-158 | 473 |
| MS.gene057131.t1 | AT1G64610 | 49.432 | 528 | 217 | 14 | 190 | 706 | 159 | 647 | 1.01e-158 | 473 |
| MS.gene057131.t1 | AT5G42010 | 54.118 | 340 | 151 | 4 | 192 | 526 | 195 | 534 | 2.64e-125 | 384 |
| MS.gene057131.t1 | AT5G54200 | 44.444 | 504 | 240 | 11 | 225 | 704 | 336 | 823 | 5.18e-123 | 386 |
| MS.gene057131.t1 | AT3G15470 | 42.270 | 511 | 253 | 11 | 225 | 706 | 386 | 883 | 3.88e-118 | 375 |
| MS.gene057131.t1 | AT1G48870 | 40.612 | 490 | 226 | 11 | 217 | 703 | 163 | 590 | 1.90e-103 | 328 |
| MS.gene057131.t1 | AT1G48870 | 40.612 | 490 | 226 | 11 | 217 | 703 | 163 | 590 | 1.90e-103 | 328 |
| MS.gene057131.t1 | AT1G48870 | 40.612 | 490 | 226 | 11 | 217 | 703 | 163 | 590 | 1.90e-103 | 328 |
| MS.gene057131.t1 | AT5G02430 | 39.692 | 519 | 266 | 13 | 225 | 703 | 384 | 895 | 7.62e-95 | 314 |
| MS.gene057131.t1 | AT2G37670 | 39.847 | 522 | 262 | 13 | 227 | 703 | 379 | 893 | 1.84e-92 | 307 |
| MS.gene057131.t1 | AT2G37670 | 39.847 | 522 | 262 | 13 | 227 | 703 | 380 | 894 | 1.87e-92 | 307 |
| MS.gene057131.t1 | AT3G49660 | 23.385 | 325 | 176 | 12 | 246 | 563 | 18 | 276 | 7.85e-18 | 85.5 |
| MS.gene057131.t1 | AT4G02730 | 29.224 | 219 | 138 | 10 | 349 | 559 | 78 | 287 | 4.61e-17 | 83.6 |
| MS.gene057131.t1 | AT2G16405 | 25.214 | 234 | 159 | 4 | 344 | 561 | 202 | 435 | 2.46e-14 | 76.6 |
| MS.gene057131.t1 | AT5G67320 | 24.691 | 243 | 142 | 9 | 244 | 450 | 357 | 594 | 1.54e-11 | 68.2 |
Find 169 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGACACCATTGTTTA+TGG | 0.074372 | 3.1:-73765882 | MS.gene057131:CDS |
| GATTCCCAACTATGCTTAAT+TGG | 0.172014 | 3.1:-73764787 | MS.gene057131:CDS |
| CAGAGGGATAACTGGCTTTC+AGG | 0.188767 | 3.1:-73764746 | MS.gene057131:intron |
| ATGCTTGAGGGGTCAATTTC+AGG | 0.194762 | 3.1:+73765929 | None:intergenic |
| AAGAGGATGTTGTGTCTATT+AGG | 0.227175 | 3.1:-73766759 | MS.gene057131:CDS |
| GAGGAGAAGCTTCCTGTTTC+GGG | 0.230139 | 3.1:-73764035 | MS.gene057131:CDS |
| CGAGGAGAAGCTTCCTGTTT+CGG | 0.236200 | 3.1:-73764036 | MS.gene057131:CDS |
| GTACAGGTAGCCCGTAATTT+TGG | 0.245270 | 3.1:+73763874 | None:intergenic |
| GCCATCTCAAGATGGAAATT+TGG | 0.253348 | 3.1:-73766422 | MS.gene057131:CDS |
| ACATGTAACCATAACTTTCT+TGG | 0.275795 | 3.1:+73764604 | None:intergenic |
| TGGTTACTAGAACGGTAAAT+AGG | 0.280748 | 3.1:-73766252 | MS.gene057131:CDS |
| CCTAACTTTCTTAGATTTCA+TGG | 0.283800 | 3.1:+73764265 | None:intergenic |
| GAGAAAGAAGCAGGTGGGTT+GGG | 0.287380 | 3.1:+73764113 | None:intergenic |
| TCCAACAACCGGAAGATCTT+AGG | 0.295299 | 3.1:+73765791 | None:intergenic |
| GATGCGCACCTTTCCGTCTA+TGG | 0.305937 | 3.1:+73765349 | None:intergenic |
| GTGAGTTCTTCGGAGGAATT+TGG | 0.313989 | 3.1:-73766466 | MS.gene057131:CDS |
| CTACGCTCTCTCACACTCTT+TGG | 0.324124 | 3.1:+73766649 | None:intergenic |
| GATGAAGATTATTTCATTAG+TGG | 0.325769 | 3.1:-73765374 | MS.gene057131:CDS |
| GGGATTGTTGGATCTTTAGA+AGG | 0.327630 | 3.1:-73765149 | MS.gene057131:CDS |
| GTGGTGAAGATGGGGTTGTT+CGG | 0.332946 | 3.1:-73765997 | MS.gene057131:CDS |
| GACACCATTGTTTATGGATA+AGG | 0.339226 | 3.1:-73765876 | MS.gene057131:CDS |
| CTTCCTGGCAGAGGGATAAC+TGG | 0.340161 | 3.1:-73764754 | MS.gene057131:CDS |
| TGGTGAAGATGGGGTTGTTC+GGG | 0.350996 | 3.1:-73765996 | MS.gene057131:CDS |
| ATTGATAGATAGAGAGTTTG+AGG | 0.355153 | 3.1:-73766290 | MS.gene057131:CDS |
| TTCGGAGGAATTTGGTTTAG+TGG | 0.361491 | 3.1:-73766458 | MS.gene057131:CDS |
| AGGACTCTAATGTATATCTA+TGG | 0.364797 | 3.1:-73764316 | MS.gene057131:CDS |
| TAGTCCTGATGGGCAGTATC+TGG | 0.368035 | 3.1:-73766026 | MS.gene057131:CDS |
| GAGGATTGTGTAAATGTCTC+TGG | 0.370035 | 3.1:-73766331 | MS.gene057131:CDS |
| TGGGCATAGAAGTGAAGTTT+TGG | 0.376344 | 3.1:-73765747 | MS.gene057131:CDS |
| TAGACGGAAAGGTGCGCATC+TGG | 0.381026 | 3.1:-73765346 | MS.gene057131:CDS |
| CCGATTCTCAGGTTGTTGAT+TGG | 0.381470 | 3.1:-73765316 | MS.gene057131:CDS |
| GCCTAAGATCTTCCGGTTGT+TGG | 0.381485 | 3.1:-73765792 | MS.gene057131:CDS |
| CCATGAAATCTAAGAAAGTT+AGG | 0.382192 | 3.1:-73764265 | MS.gene057131:CDS |
| GAAGGGAGCTATGCAGTCTC+AGG | 0.387775 | 3.1:-73766166 | MS.gene057131:CDS |
| ATGAAATAATCTTCATCAAC+AGG | 0.393624 | 3.1:+73765380 | None:intergenic |
| CTGACAAAACTGTCCGACTA+TGG | 0.394030 | 3.1:-73765586 | MS.gene057131:CDS |
| GTTGATAATGATAGAGAAGA+AGG | 0.394764 | 3.1:-73766184 | MS.gene057131:CDS |
| TTGCTCTAGTGTGAGTTCTT+CGG | 0.402105 | 3.1:-73766476 | MS.gene057131:CDS |
| AGAAAGAAGCAGGTGGGTTG+GGG | 0.408797 | 3.1:+73764114 | None:intergenic |
| TCAAGATTCCAAGAAAGTTA+TGG | 0.411964 | 3.1:-73764612 | MS.gene057131:CDS |
| CTGGCTACAGGTGGTGAAGA+TGG | 0.415140 | 3.1:-73766007 | MS.gene057131:CDS |
| TTGATTATGAAGTGTGGATT+CGG | 0.416684 | 3.1:-73766675 | MS.gene057131:CDS |
| TTGGTCTTGGAGCCCGAAAC+AGG | 0.417453 | 3.1:+73764023 | None:intergenic |
| GCGGTCTTTCTCATGCTCTT+CGG | 0.420033 | 3.1:+73765839 | None:intergenic |
| AAGTCACACTTCATTTCAAA+CGG | 0.422322 | 3.1:+73763851 | None:intergenic |
| GGTTACTAGAACGGTAAATA+GGG | 0.425943 | 3.1:-73766251 | MS.gene057131:CDS |
| TTCCAAAGGGATCTGCAACC+TGG | 0.426271 | 3.1:-73764061 | MS.gene057131:CDS |
| ATATCTATGGAACGTTAATC+AGG | 0.429417 | 3.1:-73764303 | MS.gene057131:CDS |
| GGCCAGGTTGCAGATCCCTT+TGG | 0.430320 | 3.1:+73764059 | None:intergenic |
| ACCCCACGCATGAGCATTGT+TGG | 0.432490 | 3.1:+73763941 | None:intergenic |
| TTTACCAATTAAGCATAGTT+GGG | 0.432871 | 3.1:+73764783 | None:intergenic |
| CTGGACGATACCCGATTCTC+AGG | 0.435686 | 3.1:-73765327 | MS.gene057131:CDS |
| CCCATCAGGACTAAATTTCA+TGG | 0.436002 | 3.1:+73766036 | None:intergenic |
| TTAAATAATACCTGCCCATC+CGG | 0.437117 | 3.1:+73765254 | None:intergenic |
| CCAATCAACAACCTGAGAAT+CGG | 0.440688 | 3.1:+73765316 | None:intergenic |
| GTATAACAGGGAGGGATTGT+TGG | 0.454570 | 3.1:-73765161 | MS.gene057131:intron |
| TGGTCATTGTGACTGCAGGC+TGG | 0.456531 | 3.1:-73763917 | MS.gene057131:CDS |
| AAATTGCACCTTCATGCGCT+TGG | 0.462786 | 3.1:+73766062 | None:intergenic |
| TACCGCAACTGAAGCGTTTG+AGG | 0.466180 | 3.1:+73764226 | None:intergenic |
| ACCATGAAATTTAGTCCTGA+TGG | 0.466588 | 3.1:-73766037 | MS.gene057131:CDS |
| TCGGGTGTGGCAAGTGGTTG+AGG | 0.469415 | 3.1:-73765978 | MS.gene057131:CDS |
| CAATGCTCATGCGTGGGGTA+TGG | 0.470834 | 3.1:-73763937 | MS.gene057131:CDS |
| CTAACTTTCTTAGATTTCAT+GGG | 0.472148 | 3.1:+73764266 | None:intergenic |
| GATCTTTAGAAGGAAATTGT+TGG | 0.473234 | 3.1:-73765139 | MS.gene057131:CDS |
| TGGCTACAGGTGGTGAAGAT+GGG | 0.475427 | 3.1:-73766006 | MS.gene057131:CDS |
| GTAGCCAGATACTGCCCATC+AGG | 0.476689 | 3.1:+73766022 | None:intergenic |
| TCACAAGTCAGAATCCTTGA+TGG | 0.477119 | 3.1:-73764575 | MS.gene057131:CDS |
| AGGATTGTGTAAATGTCTCT+GGG | 0.480040 | 3.1:-73766330 | MS.gene057131:CDS |
| ACATTGGACTGCCTGTGTTA+AGG | 0.480580 | 3.1:+73764384 | None:intergenic |
| TTGTGACTGCAGGCTGGGAC+GGG | 0.481187 | 3.1:-73763911 | MS.gene057131:CDS |
| AGAGGATGTTGTGTCTATTA+GGG | 0.481348 | 3.1:-73766758 | MS.gene057131:CDS |
| AAGATGGGGTTGTTCGGGTG+TGG | 0.485043 | 3.1:-73765991 | MS.gene057131:CDS |
| GATGGGCAGTATCTGGCTAC+AGG | 0.486225 | 3.1:-73766019 | MS.gene057131:CDS |
| AGGAAGCTTCTCCTCGGGCC+AGG | 0.488808 | 3.1:+73764043 | None:intergenic |
| AACGGTAAATAGGGCGAGAA+GGG | 0.489976 | 3.1:-73766242 | MS.gene057131:CDS |
| ATTGTGACTGCAGGCTGGGA+CGG | 0.490386 | 3.1:-73763912 | MS.gene057131:CDS |
| CAATCAACAACCTGAGAATC+GGG | 0.492398 | 3.1:+73765317 | None:intergenic |
| AAATCAGTTGGTAGTTGCTA+AGG | 0.492824 | 3.1:-73766359 | MS.gene057131:CDS |
| AGAGAAAGAAGCAGGTGGGT+TGG | 0.493090 | 3.1:+73764112 | None:intergenic |
| ACTTCATTTCAAACGGGTAC+AGG | 0.498608 | 3.1:+73763858 | None:intergenic |
| ACCAGATAATCACTTGCAGC+TGG | 0.500109 | 3.1:-73764809 | MS.gene057131:intron |
| GAAACAGGAAGCTTCTCCTC+GGG | 0.503691 | 3.1:+73764038 | None:intergenic |
| CGAAACAGGAAGCTTCTCCT+CGG | 0.504206 | 3.1:+73764037 | None:intergenic |
| AGTCACACTTCATTTCAAAC+GGG | 0.505736 | 3.1:+73763852 | None:intergenic |
| TCCAAATTTCCATCTTGAGA+TGG | 0.506574 | 3.1:+73766421 | None:intergenic |
| AAAGAGTGTGAGAGAGCGTA+GGG | 0.507140 | 3.1:-73766647 | MS.gene057131:CDS |
| ACTGTAAAGTAAATGCTTGA+GGG | 0.510241 | 3.1:+73765917 | None:intergenic |
| AACATCATTGCTGCGAAAGT+CGG | 0.511514 | 3.1:-73763997 | MS.gene057131:CDS |
| AGTGAATCGTGACCATTGCT+TGG | 0.512373 | 3.1:-73765561 | MS.gene057131:CDS |
| GAAATTTGGAGAAAAGAATG+AGG | 0.519213 | 3.1:-73766408 | MS.gene057131:CDS |
| ACGCTTCAGTTGCGGTACCT+TGG | 0.520295 | 3.1:-73764220 | MS.gene057131:CDS |
| TTCCTCAAACGCTTCAGTTG+CGG | 0.520926 | 3.1:-73764228 | MS.gene057131:CDS |
| TTCATTAGTGGATCCATAGA+CGG | 0.522706 | 3.1:-73765362 | MS.gene057131:CDS |
| AACTTTCATCGCTTTACTTG+AGG | 0.524102 | 3.1:-73766093 | MS.gene057131:CDS |
| ATGTTATCGACCGGATGGGC+AGG | 0.526250 | 3.1:-73765264 | MS.gene057131:intron |
| AATCATATGGGTAGTTTCAG+TGG | 0.527946 | 3.1:-73766811 | None:intergenic |
| TTGATAATGATAGAGAAGAA+GGG | 0.528008 | 3.1:-73766183 | MS.gene057131:CDS |
| TCAGTGGAGAAGAAGATTGT+CGG | 0.529362 | 3.1:-73766795 | MS.gene057131:CDS |
| GGGGAGGTTTATGAAGAGCA+TGG | 0.530487 | 3.1:-73766626 | MS.gene057131:CDS |
| TAAATAGGGCGAGAAGGGGT+TGG | 0.531097 | 3.1:-73766237 | MS.gene057131:CDS |
| AGATAGTAGTGGTTCTGAAG+AGG | 0.531135 | 3.1:-73766530 | MS.gene057131:CDS |
| CACTGTAAAGTAAATGCTTG+AGG | 0.537714 | 3.1:+73765916 | None:intergenic |
| GCTATGCAGTCTCAGGGTGT+AGG | 0.538360 | 3.1:-73766159 | MS.gene057131:CDS |
| ATAACTTTCTTGGAATCTTG+AGG | 0.539357 | 3.1:+73764614 | None:intergenic |
| AAATCACATTAAGCCCATCA+AGG | 0.539545 | 3.1:+73764561 | None:intergenic |
| GACTGCAGTATGTTATCGAC+CGG | 0.543308 | 3.1:-73765273 | MS.gene057131:CDS |
| AGAGAGTTTGAGGATGCAGA+TGG | 0.543559 | 3.1:-73766280 | MS.gene057131:CDS |
| TCTGGGGTGTCTCATTGTCA+AGG | 0.544039 | 3.1:-73766313 | MS.gene057131:CDS |
| AAGTAAAGGTCCGTCAATGT+AGG | 0.547509 | 3.1:-73766129 | MS.gene057131:CDS |
| TGTGCATCATTTACCTCAGA+CGG | 0.548187 | 3.1:-73764362 | MS.gene057131:CDS |
| GGTATGGTCATTGTGACTGC+AGG | 0.549386 | 3.1:-73763921 | MS.gene057131:CDS |
| CCATGAAATTTAGTCCTGAT+GGG | 0.550381 | 3.1:-73766036 | MS.gene057131:CDS |
| TGGTTCAGAGAGAAAGAAGC+AGG | 0.550963 | 3.1:+73764104 | None:intergenic |
| GGTCATTGTGACTGCAGGCT+GGG | 0.557152 | 3.1:-73763916 | MS.gene057131:CDS |
| CACAAGTCAGAATCCTTGAT+GGG | 0.560457 | 3.1:-73764574 | MS.gene057131:CDS |
| GAGTGATTGTTCAAATCAGT+TGG | 0.560983 | 3.1:-73766371 | MS.gene057131:CDS |
| TAAAATATGTTTCCCGTCTG+AGG | 0.561223 | 3.1:+73764349 | None:intergenic |
| TACCAACAATGCTCATGCGT+GGG | 0.562604 | 3.1:-73763943 | MS.gene057131:CDS |
| GGTTGTTCGGGTGTGGCAAG+TGG | 0.564414 | 3.1:-73765984 | MS.gene057131:CDS |
| GCAGTATGTTATCGACCGGA+TGG | 0.565468 | 3.1:-73765269 | MS.gene057131:CDS |
| CAAAGAGTGTGAGAGAGCGT+AGG | 0.568692 | 3.1:-73766648 | MS.gene057131:CDS |
| CACGATTCACTTGCCATAGT+CGG | 0.575462 | 3.1:+73765573 | None:intergenic |
| AACCATTGCATGAGTTCCGT+GGG | 0.575505 | 3.1:-73765766 | MS.gene057131:CDS |
| GAACGGTAAATAGGGCGAGA+AGG | 0.577669 | 3.1:-73766243 | MS.gene057131:CDS |
| AAAAGAAACTTCCTGGCAGA+GGG | 0.579638 | 3.1:-73764762 | MS.gene057131:CDS |
| GGGAGGTTTATGAAGAGCAT+GGG | 0.583225 | 3.1:-73766625 | MS.gene057131:CDS |
| CTCTAGTGTGAGTTCTTCGG+AGG | 0.585376 | 3.1:-73766473 | MS.gene057131:CDS |
| AAGCCAGTTATCCCTCTGCC+AGG | 0.589263 | 3.1:+73764751 | None:intergenic |
| AAACCATTGCATGAGTTCCG+TGG | 0.589350 | 3.1:-73765767 | MS.gene057131:CDS |
| GGCTACAGGTGGTGAAGATG+GGG | 0.590519 | 3.1:-73766005 | MS.gene057131:CDS |
| CAAGATATCCAAGCGCATGA+AGG | 0.592474 | 3.1:-73766070 | MS.gene057131:CDS |
| CTGTAAAGTAAATGCTTGAG+GGG | 0.592786 | 3.1:+73765918 | None:intergenic |
| GAAAGAAGAAGAGATAGTAG+TGG | 0.594074 | 3.1:-73766541 | MS.gene057131:CDS |
| TGGTGATGTGGTTACTAGAA+CGG | 0.595840 | 3.1:-73766260 | MS.gene057131:CDS |
| AATAACTTGCCATCTCAAGA+TGG | 0.595950 | 3.1:-73766430 | MS.gene057131:CDS |
| GGTAGTTGCTAAGGAATCTG+AGG | 0.598779 | 3.1:-73766350 | MS.gene057131:CDS |
| GGAGGTTTCAAACCGTGCCA+AGG | 0.598891 | 3.1:+73764203 | None:intergenic |
| TCAGTTGCGGTACCTTGGCA+CGG | 0.598922 | 3.1:-73764215 | MS.gene057131:CDS |
| AAACTTCACTTCTATGCCCA+CGG | 0.602774 | 3.1:+73765750 | None:intergenic |
| GTGTAGGCTTCAGAAAGTAA+AGG | 0.602811 | 3.1:-73766143 | MS.gene057131:CDS |
| GTGCATCATTTACCTCAGAC+GGG | 0.603220 | 3.1:-73764361 | MS.gene057131:CDS |
| GAGGTAAATGATGCACACAT+TGG | 0.603566 | 3.1:+73764368 | None:intergenic |
| TAGTGGATCCATAGACGGAA+AGG | 0.604269 | 3.1:-73765357 | MS.gene057131:CDS |
| TAACTTTCTTAGATTTCATG+GGG | 0.605262 | 3.1:+73764267 | None:intergenic |
| AAGAGGAATTTAGTTCATGT+CGG | 0.608009 | 3.1:-73766513 | MS.gene057131:CDS |
| GTGAAAACACTTCCAAGCAA+TGG | 0.611173 | 3.1:+73765549 | None:intergenic |
| TGCCCACGGAACTCATGCAA+TGG | 0.612153 | 3.1:+73765764 | None:intergenic |
| AAATTTGGAGAAAAGAATGA+GGG | 0.614888 | 3.1:-73766407 | MS.gene057131:CDS |
| AGAGTGTGAGAGAGCGTAGG+GGG | 0.617428 | 3.1:-73766645 | MS.gene057131:CDS |
| CAGTATGTTATCGACCGGAT+GGG | 0.618616 | 3.1:-73765268 | MS.gene057131:CDS |
| TTCAGAGAGAAAGAAGCAGG+TGG | 0.627337 | 3.1:+73764107 | None:intergenic |
| ACAACCGGAAGATCTTAGGC+GGG | 0.627533 | 3.1:+73765795 | None:intergenic |
| AACAACACAAGCTGAATCTG+CGG | 0.632119 | 3.1:+73765820 | None:intergenic |
| TCAATGTAGGAAGAAAATGA+AGG | 0.633828 | 3.1:-73766116 | MS.gene057131:CDS |
| GTACCAACAATGCTCATGCG+TGG | 0.637345 | 3.1:-73763944 | MS.gene057131:CDS |
| TCAGAGAGAAAGAAGCAGGT+GGG | 0.641323 | 3.1:+73764108 | None:intergenic |
| TGAGGATGCAGATGGTGATG+TGG | 0.643720 | 3.1:-73766272 | MS.gene057131:CDS |
| AACAACCGGAAGATCTTAGG+CGG | 0.646128 | 3.1:+73765794 | None:intergenic |
| AAGGGAGCTATGCAGTCTCA+GGG | 0.648697 | 3.1:-73766165 | MS.gene057131:CDS |
| GGGATCTGCAACCTGGCCCG+AGG | 0.648859 | 3.1:-73764054 | MS.gene057131:CDS |
| ACCAACAATGCTCATGCGTG+GGG | 0.652027 | 3.1:-73763942 | MS.gene057131:CDS |
| TGTAATTGCATAACAACTTG+TGG | 0.663052 | 3.1:+73764137 | None:intergenic |
| GGTGTGGCAAGTGGTTGAGG+AGG | 0.668449 | 3.1:-73765975 | MS.gene057131:CDS |
| ACGGTAAATAGGGCGAGAAG+GGG | 0.672129 | 3.1:-73766241 | MS.gene057131:CDS |
| AGAAAGTTAGGTCTTGTGAG+CGG | 0.675224 | 3.1:-73764253 | MS.gene057131:CDS |
| GGGCAGTATCTGGCTACAGG+TGG | 0.702356 | 3.1:-73766016 | MS.gene057131:CDS |
| ATTGAGATCGATGACGTGCG+TGG | 0.720656 | 3.1:-73766206 | MS.gene057131:CDS |
| AAGAGTGTGAGAGAGCGTAG+GGG | 0.726141 | 3.1:-73766646 | MS.gene057131:CDS |
| GGATTGTGTAAATGTCTCTG+GGG | 0.731454 | 3.1:-73766329 | MS.gene057131:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACTTAAATGGAATA+TGG | + | chr3.1:73765610-73765629 | None:intergenic | 15.0% |
| !! | AAATGTTAATCAAGTTATAT+TGG | - | chr3.1:73765747-73765766 | MS.gene057131:CDS | 15.0% |
| !! | AATGTTAATCAAGTTATATT+GGG | - | chr3.1:73765748-73765767 | MS.gene057131:CDS | 15.0% |
| !! | ATAAAAACATTCCAAAATTA+CGG | - | chr3.1:73766786-73766805 | MS.gene057131:CDS | 15.0% |
| !!! | GTTTTAATAATCAAAATGTT+AGG | - | chr3.1:73765668-73765687 | MS.gene057131:intron | 15.0% |
| !! | GAATAATATGATGTATAACA+GGG | - | chr3.1:73765498-73765517 | MS.gene057131:intron | 20.0% |
| !! | TAAAAACATTCCAAAATTAC+GGG | - | chr3.1:73766787-73766806 | MS.gene057131:CDS | 20.0% |
| !!! | AAATTCATTGTATTTTGAGA+AGG | - | chr3.1:73764096-73764115 | MS.gene057131:CDS | 20.0% |
| !!! | AGAATACTATCTAAAATTTG+AGG | + | chr3.1:73766192-73766211 | None:intergenic | 20.0% |
| !!! | ATAACTTGATTAACATTTTG+CGG | + | chr3.1:73765745-73765764 | None:intergenic | 20.0% |
| !!! | GTTCATTACATTTTATTTTC+AGG | - | chr3.1:73766264-73766283 | MS.gene057131:CDS | 20.0% |
| !!! | TGTTGGTTTTATAAAATATC+AGG | - | chr3.1:73765549-73765568 | MS.gene057131:CDS | 20.0% |
| ! | AAATGGAATATGGAGATATA+TGG | + | chr3.1:73765600-73765619 | None:intergenic | 25.0% |
| ! | AAATTTGGAGAAAAGAATGA+GGG | - | chr3.1:73764264-73764283 | MS.gene057131:CDS | 25.0% |
| ! | AAGCACATGTTTAAATTGAA+TGG | + | chr3.1:73765456-73765475 | None:intergenic | 25.0% |
| ! | AATGGAATATGGAGATATAT+GGG | + | chr3.1:73765599-73765618 | None:intergenic | 25.0% |
| ! | AATTATATGTTCTGTCACTA+AGG | - | chr3.1:73766242-73766261 | MS.gene057131:CDS | 25.0% |
| ! | AATTGAAAACCAGAAATGTT+AGG | + | chr3.1:73765833-73765852 | None:intergenic | 25.0% |
| ! | ATGAAATAATCTTCATCAAC+AGG | + | chr3.1:73765294-73765313 | None:intergenic | 25.0% |
| ! | CGAATAATATGATGTATAAC+AGG | - | chr3.1:73765497-73765516 | MS.gene057131:intron | 25.0% |
| ! | CTAACTTTCTTAGATTTCAT+GGG | + | chr3.1:73766408-73766427 | None:intergenic | 25.0% |
| ! | GATGAAGATTATTTCATTAG+TGG | - | chr3.1:73765297-73765316 | MS.gene057131:CDS | 25.0% |
| ! | GGGTCAAAAAATAACTTAAA+TGG | + | chr3.1:73765617-73765636 | None:intergenic | 25.0% |
| ! | TAACTTTCTTAGATTTCATG+GGG | + | chr3.1:73766407-73766426 | None:intergenic | 25.0% |
| ! | TACTTCTTATTCAAAATCTG+TGG | + | chr3.1:73765707-73765726 | None:intergenic | 25.0% |
| ! | TTTAAACATGTGCTTTATAG+AGG | - | chr3.1:73765461-73765480 | MS.gene057131:intron | 25.0% |
| ! | TTTACCAATTAAGCATAGTT+GGG | + | chr3.1:73765891-73765910 | None:intergenic | 25.0% |
| ! | TTTATGGATAAGGAAAAACT+TGG | - | chr3.1:73764805-73764824 | MS.gene057131:CDS | 25.0% |
| !! | ATGATGATGATGATGATAAA+GGG | - | chr3.1:73763954-73763973 | MS.gene057131:CDS | 25.0% |
| !! | CACAATTTGTTTGTATTTGA+TGG | - | chr3.1:73765238-73765257 | MS.gene057131:intron | 25.0% |
| !! | CTTTTTCTCTGACAATTTTT+TGG | - | chr3.1:73765997-73766016 | MS.gene057131:CDS | 25.0% |
| !! | GACATTCAATTGTTCATTTT+CGG | + | chr3.1:73766499-73766518 | None:intergenic | 25.0% |
| !! | TTTTACCAATTAAGCATAGT+TGG | + | chr3.1:73765892-73765911 | None:intergenic | 25.0% |
| !! | TTTTCCTTATCCATAAACAA+TGG | + | chr3.1:73764802-73764821 | None:intergenic | 25.0% |
| !!! | TTGATAATGATAGAGAAGAA+GGG | - | chr3.1:73764488-73764507 | MS.gene057131:intron | 25.0% |
| !!! | TTGATTTTGATTATGAAGTG+TGG | - | chr3.1:73763990-73764009 | MS.gene057131:CDS | 25.0% |
| !!! | TTTTGAGAAGGAAAAGATTA+TGG | - | chr3.1:73764108-73764127 | MS.gene057131:CDS | 25.0% |
| AAGAAGATACTGCATTCAAA+AGG | + | chr3.1:73765055-73765074 | None:intergenic | 30.0% | |
| AAGACTCCAAGAAAAAATCT+TGG | + | chr3.1:73766590-73766609 | None:intergenic | 30.0% | |
| AATATGATGTATAACAGGGA+GGG | - | chr3.1:73765502-73765521 | MS.gene057131:intron | 30.0% | |
| ACATGTAACCATAACTTTCT+TGG | + | chr3.1:73766070-73766089 | None:intergenic | 30.0% | |
| ACTGTAAAGTAAATGCTTGA+GGG | + | chr3.1:73764757-73764776 | None:intergenic | 30.0% | |
| AGGACTCTAATGTATATCTA+TGG | - | chr3.1:73766355-73766374 | MS.gene057131:CDS | 30.0% | |
| AGTATGTAGGGATTTAACAA+AGG | + | chr3.1:73766155-73766174 | None:intergenic | 30.0% | |
| ATAACTTTCTTGGAATCTTG+AGG | + | chr3.1:73766060-73766079 | None:intergenic | 30.0% | |
| ATATCTATGGAACGTTAATC+AGG | - | chr3.1:73766368-73766387 | MS.gene057131:CDS | 30.0% | |
| ATCATCATCATCATCATCAT+CGG | + | chr3.1:73763948-73763967 | None:intergenic | 30.0% | |
| ATTGATAGATAGAGAGTTTG+AGG | - | chr3.1:73764381-73764400 | MS.gene057131:CDS | 30.0% | |
| ATTGGTAAAAAGAAACTTCC+TGG | - | chr3.1:73765902-73765921 | MS.gene057131:CDS | 30.0% | |
| CCATGAAATCTAAGAAAGTT+AGG | - | chr3.1:73766406-73766425 | MS.gene057131:CDS | 30.0% | |
| CCTAACTTTCTTAGATTTCA+TGG | + | chr3.1:73766409-73766428 | None:intergenic | 30.0% | |
| GAAATTTGGAGAAAAGAATG+AGG | - | chr3.1:73764263-73764282 | MS.gene057131:CDS | 30.0% | |
| TAATATGATGTATAACAGGG+AGG | - | chr3.1:73765501-73765520 | MS.gene057131:intron | 30.0% | |
| TCAAGATTCCAAGAAAGTTA+TGG | - | chr3.1:73766059-73766078 | MS.gene057131:CDS | 30.0% | |
| TCAATGTAGGAAGAAAATGA+AGG | - | chr3.1:73764555-73764574 | MS.gene057131:CDS | 30.0% | |
| TCAATTGACACCATTGTTTA+TGG | - | chr3.1:73764789-73764808 | MS.gene057131:CDS | 30.0% | |
| TGTAATTGCATAACAACTTG+TGG | + | chr3.1:73766537-73766556 | None:intergenic | 30.0% | |
| TTGATTATGAAGTGTGGATT+CGG | - | chr3.1:73763996-73764015 | MS.gene057131:CDS | 30.0% | |
| ! | AAGAGGAATTTAGTTCATGT+CGG | - | chr3.1:73764158-73764177 | MS.gene057131:CDS | 30.0% |
| ! | AATTGTTCATTTTCGGAGAT+TGG | + | chr3.1:73766492-73766511 | None:intergenic | 30.0% |
| ! | GATCTTTAGAAGGAAATTGT+TGG | - | chr3.1:73765532-73765551 | MS.gene057131:intron | 30.0% |
| ! | GATGATGATGATGATGATAA+AGG | - | chr3.1:73763953-73763972 | MS.gene057131:CDS | 30.0% |
| ! | GTGTTTTCACACAGTAATTA+TGG | - | chr3.1:73765135-73765154 | MS.gene057131:CDS | 30.0% |
| ! | TCATTTTCTTCCTACATTGA+CGG | + | chr3.1:73764555-73764574 | None:intergenic | 30.0% |
| ! | TGATGATGATGATGATAAAG+GGG | - | chr3.1:73763955-73763974 | MS.gene057131:CDS | 30.0% |
| !! | GTTGATAATGATAGAGAAGA+AGG | - | chr3.1:73764487-73764506 | MS.gene057131:intron | 30.0% |
| !!! | CAATGATGTTTTTTTGGTCT+TGG | + | chr3.1:73766664-73766683 | None:intergenic | 30.0% |
| !!! | TCTGAACCAAGATTTTTTCT+TGG | - | chr3.1:73766581-73766600 | MS.gene057131:CDS | 30.0% |
| !!! | TTTTTTGACCCTTCGATTTT+TGG | - | chr3.1:73765626-73765645 | MS.gene057131:intron | 30.0% |
| AAATCACATTAAGCCCATCA+AGG | + | chr3.1:73766113-73766132 | None:intergenic | 35.0% | |
| AACTTTCATCGCTTTACTTG+AGG | - | chr3.1:73764578-73764597 | MS.gene057131:CDS | 35.0% | |
| AAGAGGATGTTGTGTCTATT+AGG | - | chr3.1:73763912-73763931 | MS.gene057131:CDS | 35.0% | |
| AATCACTTAAGACTTGAGCT+TGG | - | chr3.1:73765806-73765825 | MS.gene057131:CDS | 35.0% | |
| AATTGTGAGATGAACTGTTG+TGG | + | chr3.1:73765225-73765244 | None:intergenic | 35.0% | |
| ACCATGAAATTTAGTCCTGA+TGG | - | chr3.1:73764634-73764653 | MS.gene057131:intron | 35.0% | |
| ACCTAAAGAAGCCTACAAAT+CGG | + | chr3.1:73765183-73765202 | None:intergenic | 35.0% | |
| AGAGGATGTTGTGTCTATTA+GGG | - | chr3.1:73763913-73763932 | MS.gene057131:CDS | 35.0% | |
| AGGATTGTGTAAATGTCTCT+GGG | - | chr3.1:73764341-73764360 | MS.gene057131:CDS | 35.0% | |
| CACTGTAAAGTAAATGCTTG+AGG | + | chr3.1:73764758-73764777 | None:intergenic | 35.0% | |
| CCATGAAATTTAGTCCTGAT+GGG | - | chr3.1:73764635-73764654 | MS.gene057131:intron | 35.0% | |
| CTGTAAAGTAAATGCTTGAG+GGG | + | chr3.1:73764756-73764775 | None:intergenic | 35.0% | |
| CTGTTGTGGTCAAACAAATT+AGG | + | chr3.1:73765211-73765230 | None:intergenic | 35.0% | |
| GAAAGAAGAAGAGATAGTAG+TGG | - | chr3.1:73764130-73764149 | MS.gene057131:CDS | 35.0% | |
| GACACCATTGTTTATGGATA+AGG | - | chr3.1:73764795-73764814 | MS.gene057131:CDS | 35.0% | |
| GAGTGATTGTTCAAATCAGT+TGG | - | chr3.1:73764300-73764319 | MS.gene057131:CDS | 35.0% | |
| GATTCCCAACTATGCTTAAT+TGG | - | chr3.1:73765884-73765903 | MS.gene057131:CDS | 35.0% | |
| GCGAAATCAACAAGTATGTA+GGG | + | chr3.1:73766167-73766186 | None:intergenic | 35.0% | |
| GGTTACTAGAACGGTAAATA+GGG | - | chr3.1:73764420-73764439 | MS.gene057131:intron | 35.0% | |
| TAAAATATGTTTCCCGTCTG+AGG | + | chr3.1:73766325-73766344 | None:intergenic | 35.0% | |
| TCCAAATTTCCATCTTGAGA+TGG | + | chr3.1:73764253-73764272 | None:intergenic | 35.0% | |
| TGCGAAATCAACAAGTATGT+AGG | + | chr3.1:73766168-73766187 | None:intergenic | 35.0% | |
| TGGTTACTAGAACGGTAAAT+AGG | - | chr3.1:73764419-73764438 | MS.gene057131:intron | 35.0% | |
| TTAAATAATACCTGCCCATC+CGG | + | chr3.1:73765420-73765439 | None:intergenic | 35.0% | |
| ! | AATAACTTGCCATCTCAAGA+TGG | - | chr3.1:73764241-73764260 | MS.gene057131:CDS | 35.0% |
| ! | ACATATTTTATCAGCATGCG+AGG | - | chr3.1:73766335-73766354 | MS.gene057131:CDS | 35.0% |
| ! | GCATTTCTATTCCGATTTGT+AGG | - | chr3.1:73765169-73765188 | MS.gene057131:intron | 35.0% |
| ! | TTCATTAGTGGATCCATAGA+CGG | - | chr3.1:73765309-73765328 | MS.gene057131:CDS | 35.0% |
| ! | TTCTTGGAGTCTTTTCCAAA+GGG | - | chr3.1:73766597-73766616 | MS.gene057131:CDS | 35.0% |
| ! | TTTCTTGGAGTCTTTTCCAA+AGG | - | chr3.1:73766596-73766615 | MS.gene057131:CDS | 35.0% |
| !! | AAATCAGTTGGTAGTTGCTA+AGG | - | chr3.1:73764312-73764331 | MS.gene057131:CDS | 35.0% |
| !! | CAGAAGTACCAAAAATCGAA+GGG | + | chr3.1:73765637-73765656 | None:intergenic | 35.0% |
| !! | TCAGAAGTACCAAAAATCGA+AGG | + | chr3.1:73765638-73765657 | None:intergenic | 35.0% |
| !! | TTATTTTCAGGCCTTAACAC+AGG | - | chr3.1:73766276-73766295 | MS.gene057131:CDS | 35.0% |
| !!! | TCGCAGCAATGATGTTTTTT+TGG | + | chr3.1:73766670-73766689 | None:intergenic | 35.0% |
| AAAAAGAAACTTCCTGGCAG+AGG | - | chr3.1:73765908-73765927 | MS.gene057131:CDS | 40.0% | |
| AAAAGAAACTTCCTGGCAGA+GGG | - | chr3.1:73765909-73765928 | MS.gene057131:CDS | 40.0% | |
| AAACTTCACTTCTATGCCCA+CGG | + | chr3.1:73764924-73764943 | None:intergenic | 40.0% | |
| AACAACACAAGCTGAATCTG+CGG | + | chr3.1:73764854-73764873 | None:intergenic | 40.0% | |
| AACATCATTGCTGCGAAAGT+CGG | - | chr3.1:73766674-73766693 | MS.gene057131:CDS | 40.0% | |
| AAGTAAAGGTCCGTCAATGT+AGG | - | chr3.1:73764542-73764561 | MS.gene057131:intron | 40.0% | |
| CAATCAACAACCTGAGAATC+GGG | + | chr3.1:73765357-73765376 | None:intergenic | 40.0% | |
| CACAAGTCAGAATCCTTGAT+GGG | - | chr3.1:73766097-73766116 | MS.gene057131:CDS | 40.0% | |
| CCAATCAACAACCTGAGAAT+CGG | + | chr3.1:73765358-73765377 | None:intergenic | 40.0% | |
| CCCATCAGGACTAAATTTCA+TGG | + | chr3.1:73764638-73764657 | None:intergenic | 40.0% | |
| GAGGATTGTGTAAATGTCTC+TGG | - | chr3.1:73764340-73764359 | MS.gene057131:CDS | 40.0% | |
| GAGGTAAATGATGCACACAT+TGG | + | chr3.1:73766306-73766325 | None:intergenic | 40.0% | |
| GCCATCTCAAGATGGAAATT+TGG | - | chr3.1:73764249-73764268 | MS.gene057131:CDS | 40.0% | |
| GGATTGTGTAAATGTCTCTG+GGG | - | chr3.1:73764342-73764361 | MS.gene057131:CDS | 40.0% | |
| GGGATTGTTGGATCTTTAGA+AGG | - | chr3.1:73765522-73765541 | MS.gene057131:intron | 40.0% | |
| GTGAAAACACTTCCAAGCAA+TGG | + | chr3.1:73765125-73765144 | None:intergenic | 40.0% | |
| GTGTAGGCTTCAGAAAGTAA+AGG | - | chr3.1:73764528-73764547 | MS.gene057131:intron | 40.0% | |
| TCACAAGTCAGAATCCTTGA+TGG | - | chr3.1:73766096-73766115 | MS.gene057131:CDS | 40.0% | |
| TCAGTGGAGAAGAAGATTGT+CGG | - | chr3.1:73763876-73763895 | MS.gene057131:CDS | 40.0% | |
| TGTGCATCATTTACCTCAGA+CGG | - | chr3.1:73766309-73766328 | MS.gene057131:CDS | 40.0% | |
| TTGCTCTAGTGTGAGTTCTT+CGG | - | chr3.1:73764195-73764214 | MS.gene057131:CDS | 40.0% | |
| ! | AGAAAGTTAGGTCTTGTGAG+CGG | - | chr3.1:73766418-73766437 | MS.gene057131:CDS | 40.0% |
| ! | GCAATGGTTTTTCCAACAAC+CGG | + | chr3.1:73764894-73764913 | None:intergenic | 40.0% |
| ! | TCCGATTTGTAGGCTTCTTT+AGG | - | chr3.1:73765179-73765198 | MS.gene057131:intron | 40.0% |
| ! | TGGGCATAGAAGTGAAGTTT+TGG | - | chr3.1:73764924-73764943 | MS.gene057131:intron | 40.0% |
| ! | TGGTGATGTGGTTACTAGAA+CGG | - | chr3.1:73764411-73764430 | MS.gene057131:intron | 40.0% |
| ! | TGTTCATTTTCGGAGATTGG+AGG | + | chr3.1:73766489-73766508 | None:intergenic | 40.0% |
| ! | TTCGGAGGAATTTGGTTTAG+TGG | - | chr3.1:73764213-73764232 | MS.gene057131:CDS | 40.0% |
| !! | AGATAGTAGTGGTTCTGAAG+AGG | - | chr3.1:73764141-73764160 | MS.gene057131:CDS | 40.0% |
| !!! | GTGAAGTTTTGGATCTCTCT+TGG | - | chr3.1:73764935-73764954 | MS.gene057131:intron | 40.0% |
| !!! | TCGGTTTTTTGATGCTGAAG+AGG | - | chr3.1:73763895-73763914 | MS.gene057131:CDS | 40.0% |
| AAACCATTGCATGAGTTCCG+TGG | - | chr3.1:73764904-73764923 | MS.gene057131:intron | 45.0% | |
| AAATTGCACCTTCATGCGCT+TGG | + | chr3.1:73764612-73764631 | None:intergenic | 45.0% | |
| AACAACCGGAAGATCTTAGG+CGG | + | chr3.1:73764880-73764899 | None:intergenic | 45.0% | |
| AACCATTGCATGAGTTCCGT+GGG | - | chr3.1:73764905-73764924 | MS.gene057131:intron | 45.0% | |
| AACGGTAAATAGGGCGAGAA+GGG | - | chr3.1:73764429-73764448 | MS.gene057131:intron | 45.0% | |
| ACATTGGACTGCCTGTGTTA+AGG | + | chr3.1:73766290-73766309 | None:intergenic | 45.0% | |
| ACCAGATAATCACTTGCAGC+TGG | - | chr3.1:73765862-73765881 | MS.gene057131:CDS | 45.0% | |
| AGAGAGTTTGAGGATGCAGA+TGG | - | chr3.1:73764391-73764410 | MS.gene057131:intron | 45.0% | |
| AGTGAATCGTGACCATTGCT+TGG | - | chr3.1:73765110-73765129 | MS.gene057131:intron | 45.0% | |
| ATGCTTGAGGGGTCAATTTC+AGG | + | chr3.1:73764745-73764764 | None:intergenic | 45.0% | |
| CAAGATATCCAAGCGCATGA+AGG | - | chr3.1:73764601-73764620 | MS.gene057131:CDS | 45.0% | |
| CACGATTCACTTGCCATAGT+CGG | + | chr3.1:73765101-73765120 | None:intergenic | 45.0% | |
| CAGTATGTTATCGACCGGAT+GGG | - | chr3.1:73765403-73765422 | MS.gene057131:CDS | 45.0% | |
| CTGACAAAACTGTCCGACTA+TGG | - | chr3.1:73765085-73765104 | MS.gene057131:intron | 45.0% | |
| GACTGCAGTATGTTATCGAC+CGG | - | chr3.1:73765398-73765417 | MS.gene057131:CDS | 45.0% | |
| GAGCTTGGTCCTAACATTTC+TGG | - | chr3.1:73765821-73765840 | MS.gene057131:CDS | 45.0% | |
| GGTAGTTGCTAAGGAATCTG+AGG | - | chr3.1:73764321-73764340 | MS.gene057131:CDS | 45.0% | |
| GTATAACAGGGAGGGATTGT+TGG | - | chr3.1:73765510-73765529 | MS.gene057131:intron | 45.0% | |
| GTGAGTTCTTCGGAGGAATT+TGG | - | chr3.1:73764205-73764224 | MS.gene057131:CDS | 45.0% | |
| GTGCATCATTTACCTCAGAC+GGG | - | chr3.1:73766310-73766329 | MS.gene057131:CDS | 45.0% | |
| TACCAACAATGCTCATGCGT+GGG | - | chr3.1:73766728-73766747 | MS.gene057131:CDS | 45.0% | |
| TCAGAGAGAAAGAAGCAGGT+GGG | + | chr3.1:73766566-73766585 | None:intergenic | 45.0% | |
| TCCAACAACCGGAAGATCTT+AGG | + | chr3.1:73764883-73764902 | None:intergenic | 45.0% | |
| TCCAGCTGCAAGTGATTATC+TGG | + | chr3.1:73765866-73765885 | None:intergenic | 45.0% | |
| TGGTTCAGAGAGAAAGAAGC+AGG | + | chr3.1:73766570-73766589 | None:intergenic | 45.0% | |
| TTCAGAGAGAAAGAAGCAGG+TGG | + | chr3.1:73766567-73766586 | None:intergenic | 45.0% | |
| TTCCTCAAACGCTTCAGTTG+CGG | - | chr3.1:73766443-73766462 | MS.gene057131:CDS | 45.0% | |
| ! | AAAGAGTGTGAGAGAGCGTA+GGG | - | chr3.1:73764024-73764043 | MS.gene057131:CDS | 45.0% |
| ! | CCGATTCTCAGGTTGTTGAT+TGG | - | chr3.1:73765355-73765374 | MS.gene057131:CDS | 45.0% |
| ! | GGGAGGTTTATGAAGAGCAT+GGG | - | chr3.1:73764046-73764065 | MS.gene057131:CDS | 45.0% |
| ! | GTACAGGTAGCCCGTAATTT+TGG | + | chr3.1:73766800-73766819 | None:intergenic | 45.0% |
| ! | TAGTGGATCCATAGACGGAA+AGG | - | chr3.1:73765314-73765333 | MS.gene057131:CDS | 45.0% |
| ! | TTTTCCCGCCTAAGATCTTC+CGG | - | chr3.1:73764872-73764891 | MS.gene057131:intron | 45.0% |
| AAGGGAGCTATGCAGTCTCA+GGG | - | chr3.1:73764506-73764525 | MS.gene057131:intron | 50.0% | |
| ACAACCGGAAGATCTTAGGC+GGG | + | chr3.1:73764879-73764898 | None:intergenic | 50.0% | |
| ACCAACAATGCTCATGCGTG+GGG | - | chr3.1:73766729-73766748 | MS.gene057131:CDS | 50.0% | |
| ACGGTAAATAGGGCGAGAAG+GGG | - | chr3.1:73764430-73764449 | MS.gene057131:intron | 50.0% | |
| AGAGAAAGAAGCAGGTGGGT+TGG | + | chr3.1:73766562-73766581 | None:intergenic | 50.0% | |
| ATTGAGATCGATGACGTGCG+TGG | - | chr3.1:73764465-73764484 | MS.gene057131:intron | 50.0% | |
| CGAAACAGGAAGCTTCTCCT+CGG | + | chr3.1:73766637-73766656 | None:intergenic | 50.0% | |
| CGAGGAGAAGCTTCCTGTTT+CGG | - | chr3.1:73766635-73766654 | MS.gene057131:CDS | 50.0% | |
| CTACGCTCTCTCACACTCTT+TGG | + | chr3.1:73764025-73764044 | None:intergenic | 50.0% | |
| CTCTAGTGTGAGTTCTTCGG+AGG | - | chr3.1:73764198-73764217 | MS.gene057131:CDS | 50.0% | |
| GAAACAGGAAGCTTCTCCTC+GGG | + | chr3.1:73766636-73766655 | None:intergenic | 50.0% | |
| GAACGGTAAATAGGGCGAGA+AGG | - | chr3.1:73764428-73764447 | MS.gene057131:intron | 50.0% | |
| GAGGAGAAGCTTCCTGTTTC+GGG | - | chr3.1:73766636-73766655 | MS.gene057131:CDS | 50.0% | |
| GCAGTATGTTATCGACCGGA+TGG | - | chr3.1:73765402-73765421 | MS.gene057131:CDS | 50.0% | |
| GCCTAAGATCTTCCGGTTGT+TGG | - | chr3.1:73764879-73764898 | MS.gene057131:intron | 50.0% | |
| GCGGTCTTTCTCATGCTCTT+CGG | + | chr3.1:73764835-73764854 | None:intergenic | 50.0% | |
| GGGGAGGTTTATGAAGAGCA+TGG | - | chr3.1:73764045-73764064 | MS.gene057131:CDS | 50.0% | |
| GGTATGGTCATTGTGACTGC+AGG | - | chr3.1:73766750-73766769 | MS.gene057131:CDS | 50.0% | |
| GTACCAACAATGCTCATGCG+TGG | - | chr3.1:73766727-73766746 | MS.gene057131:CDS | 50.0% | |
| GTGGTGAAGATGGGGTTGTT+CGG | - | chr3.1:73764674-73764693 | MS.gene057131:intron | 50.0% | |
| TAAATAGGGCGAGAAGGGGT+TGG | - | chr3.1:73764434-73764453 | MS.gene057131:intron | 50.0% | |
| TGGCTACAGGTGGTGAAGAT+GGG | - | chr3.1:73764665-73764684 | MS.gene057131:intron | 50.0% | |
| TGGTGAAGATGGGGTTGTTC+GGG | - | chr3.1:73764675-73764694 | MS.gene057131:intron | 50.0% | |
| TTCCAAAGGGATCTGCAACC+TGG | - | chr3.1:73766610-73766629 | MS.gene057131:CDS | 50.0% | |
| ! | AAGAGTGTGAGAGAGCGTAG+GGG | - | chr3.1:73764025-73764044 | MS.gene057131:CDS | 50.0% |
| ! | CAAAGAGTGTGAGAGAGCGT+AGG | - | chr3.1:73764023-73764042 | MS.gene057131:CDS | 50.0% |
| ! | GAGAAAGAAGCAGGTGGGTT+GGG | + | chr3.1:73766561-73766580 | None:intergenic | 50.0% |
| ! | TACCGCAACTGAAGCGTTTG+AGG | + | chr3.1:73766448-73766467 | None:intergenic | 50.0% |
| ! | TAGTCCTGATGGGCAGTATC+TGG | - | chr3.1:73764645-73764664 | MS.gene057131:intron | 50.0% |
| ! | TCTGGGGTGTCTCATTGTCA+AGG | - | chr3.1:73764358-73764377 | MS.gene057131:CDS | 50.0% |
| ! | TGAGGATGCAGATGGTGATG+TGG | - | chr3.1:73764399-73764418 | MS.gene057131:intron | 50.0% |
| !! | AGAAAGAAGCAGGTGGGTTG+GGG | + | chr3.1:73766560-73766579 | None:intergenic | 50.0% |
| !! | CAGAGGGATAACTGGCTTTC+AGG | - | chr3.1:73765925-73765944 | MS.gene057131:CDS | 50.0% |
| AAGATGGGGTTGTTCGGGTG+TGG | - | chr3.1:73764680-73764699 | MS.gene057131:intron | 55.0% | |
| AAGCCAGTTATCCCTCTGCC+AGG | + | chr3.1:73765923-73765942 | None:intergenic | 55.0% | |
| ACGCTTCAGTTGCGGTACCT+TGG | - | chr3.1:73766451-73766470 | MS.gene057131:CDS | 55.0% | |
| ATGTTATCGACCGGATGGGC+AGG | - | chr3.1:73765407-73765426 | MS.gene057131:intron | 55.0% | |
| ATTGTGACTGCAGGCTGGGA+CGG | - | chr3.1:73766759-73766778 | MS.gene057131:CDS | 55.0% | |
| CAATGCTCATGCGTGGGGTA+TGG | - | chr3.1:73766734-73766753 | MS.gene057131:CDS | 55.0% | |
| CTGGACGATACCCGATTCTC+AGG | - | chr3.1:73765344-73765363 | MS.gene057131:CDS | 55.0% | |
| CTGGCTACAGGTGGTGAAGA+TGG | - | chr3.1:73764664-73764683 | MS.gene057131:intron | 55.0% | |
| CTTCCTGGCAGAGGGATAAC+TGG | - | chr3.1:73765917-73765936 | MS.gene057131:CDS | 55.0% | |
| GAAGGGAGCTATGCAGTCTC+AGG | - | chr3.1:73764505-73764524 | MS.gene057131:intron | 55.0% | |
| GATGCGCACCTTTCCGTCTA+TGG | + | chr3.1:73765325-73765344 | None:intergenic | 55.0% | |
| GATGGGCAGTATCTGGCTAC+AGG | - | chr3.1:73764652-73764671 | MS.gene057131:intron | 55.0% | |
| GCTATGCAGTCTCAGGGTGT+AGG | - | chr3.1:73764512-73764531 | MS.gene057131:intron | 55.0% | |
| GGAGGTTTCAAACCGTGCCA+AGG | + | chr3.1:73766471-73766490 | None:intergenic | 55.0% | |
| GGCTACAGGTGGTGAAGATG+GGG | - | chr3.1:73764666-73764685 | MS.gene057131:intron | 55.0% | |
| GGTCATTGTGACTGCAGGCT+GGG | - | chr3.1:73766755-73766774 | MS.gene057131:CDS | 55.0% | |
| GTAGCCAGATACTGCCCATC+AGG | + | chr3.1:73764652-73764671 | None:intergenic | 55.0% | |
| TCAGTTGCGGTACCTTGGCA+CGG | - | chr3.1:73766456-73766475 | MS.gene057131:CDS | 55.0% | |
| TGCCCACGGAACTCATGCAA+TGG | + | chr3.1:73764910-73764929 | None:intergenic | 55.0% | |
| TGGTCATTGTGACTGCAGGC+TGG | - | chr3.1:73766754-73766773 | MS.gene057131:CDS | 55.0% | |
| ! | ACCCCACGCATGAGCATTGT+TGG | + | chr3.1:73766733-73766752 | None:intergenic | 55.0% |
| ! | AGAGTGTGAGAGAGCGTAGG+GGG | - | chr3.1:73764026-73764045 | MS.gene057131:CDS | 55.0% |
| ! | TAGACGGAAAGGTGCGCATC+TGG | - | chr3.1:73765325-73765344 | MS.gene057131:CDS | 55.0% |
| !! | TTGGTCTTGGAGCCCGAAAC+AGG | + | chr3.1:73766651-73766670 | None:intergenic | 55.0% |
| GGCCAGGTTGCAGATCCCTT+TGG | + | chr3.1:73766615-73766634 | None:intergenic | 60.0% | |
| GGGCAGTATCTGGCTACAGG+TGG | - | chr3.1:73764655-73764674 | MS.gene057131:intron | 60.0% | |
| GGTGTGGCAAGTGGTTGAGG+AGG | - | chr3.1:73764696-73764715 | MS.gene057131:intron | 60.0% | |
| GGTTGTTCGGGTGTGGCAAG+TGG | - | chr3.1:73764687-73764706 | MS.gene057131:intron | 60.0% | |
| TCGGGTGTGGCAAGTGGTTG+AGG | - | chr3.1:73764693-73764712 | MS.gene057131:intron | 60.0% | |
| TTGTGACTGCAGGCTGGGAC+GGG | - | chr3.1:73766760-73766779 | MS.gene057131:CDS | 60.0% | |
| AGGAAGCTTCTCCTCGGGCC+AGG | + | chr3.1:73766631-73766650 | None:intergenic | 65.0% | |
| ! | GTGTGAGAGAGCGTAGGGGG+AGG | - | chr3.1:73764029-73764048 | MS.gene057131:CDS | 65.0% |
| GGGATCTGCAACCTGGCCCG+AGG | - | chr3.1:73766617-73766636 | MS.gene057131:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 73763866 | 73766827 | 73763866 | ID=MS.gene057131 |
| chr3.1 | mRNA | 73763866 | 73766827 | 73763866 | ID=MS.gene057131.t1;Parent=MS.gene057131 |
| chr3.1 | exon | 73765724 | 73766827 | 73765724 | ID=MS.gene057131.t1.exon1;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73765724 | 73766827 | 73765724 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| chr3.1 | exon | 73765537 | 73765627 | 73765537 | ID=MS.gene057131.t1.exon2;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73765537 | 73765627 | 73765537 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| chr3.1 | exon | 73765265 | 73765422 | 73765265 | ID=MS.gene057131.t1.exon3;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73765265 | 73765422 | 73765265 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| chr3.1 | exon | 73765123 | 73765174 | 73765123 | ID=MS.gene057131.t1.exon4;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73765123 | 73765174 | 73765123 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| chr3.1 | exon | 73764747 | 73764826 | 73764747 | ID=MS.gene057131.t1.exon5;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73764747 | 73764826 | 73764747 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| chr3.1 | exon | 73764549 | 73764642 | 73764549 | ID=MS.gene057131.t1.exon6;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73764549 | 73764642 | 73764549 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| chr3.1 | exon | 73763866 | 73764407 | 73763866 | ID=MS.gene057131.t1.exon7;Parent=MS.gene057131.t1 |
| chr3.1 | CDS | 73763866 | 73764407 | 73763866 | ID=cds.MS.gene057131.t1;Parent=MS.gene057131.t1 |
| Gene Sequence |
| Protein sequence |
