Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61118.t1 | XP_003606622.2 | 91.6 | 466 | 26 | 1 | 1 | 466 | 1 | 453 | 2.10E-230 | 808.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61118.t1 | G7JTQ0 | 91.6 | 466 | 26 | 1 | 1 | 466 | 1 | 453 | 1.5e-230 | 808.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene61118 | 0.809673 | 1.68E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene61118 | 0.809797 | 1.58E-50 | -1.69E-46 |
| MS.gene04984 | MS.gene61118 | 0.803896 | 2.80E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene61118 | 0.823969 | 1.04E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene61118 | -0.831074 | 2.05E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene61118 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene61118 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene61118 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene61118 | 0.808826 | 2.56E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene61118 | 0.825223 | 5.27E-54 | -1.69E-46 |
| MS.gene050763 | MS.gene61118 | 0.827136 | 1.85E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene61118 | 0.81202 | 5.23E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene61118 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene61118 | 0.812914 | 3.34E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene61118 | 0.820355 | 7.17E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene61118 | 0.840408 | 8.85E-58 | -1.69E-46 |
| MS.gene054379 | MS.gene61118 | 0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene61118 | 0.824946 | 6.13E-54 | -1.69E-46 |
| MS.gene054823 | MS.gene61118 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene61118 | 0.830012 | 3.73E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene61118 | 0.805913 | 1.06E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene61118 | 0.822394 | 2.42E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene61118 | 0.804583 | 2.02E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene61118 | 0.819719 | 1.00E-52 | -1.69E-46 |
| MS.gene056760 | MS.gene61118 | 0.800447 | 1.43E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene61118 | 0.8136 | 2.36E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene61118 | 0.806774 | 6.99E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene61118 | 0.850192 | 1.99E-60 | -1.69E-46 |
| MS.gene058399 | MS.gene61118 | 0.802147 | 6.44E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene61118 | 0.802106 | 6.57E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene61118 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene058646 | MS.gene61118 | 0.813337 | 2.69E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene61118 | 0.826545 | 2.56E-54 | -1.69E-46 |
| MS.gene05979 | MS.gene61118 | 0.810914 | 9.09E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene61118 | 0.824923 | 6.20E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene61118 | 0.804439 | 2.16E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene61118 | 0.840468 | 8.54E-58 | -1.69E-46 |
| MS.gene060685 | MS.gene61118 | 0.840491 | 8.42E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene61118 | 0.856144 | 3.92E-62 | -1.69E-46 |
| MS.gene060803 | MS.gene61118 | 0.873275 | 1.67E-67 | -1.69E-46 |
| MS.gene060998 | MS.gene61118 | 0.822028 | 2.95E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61118.t1 | MTR_4g063150 | 95.279 | 466 | 9 | 1 | 1 | 466 | 1 | 453 | 0.0 | 922 |
| MS.gene61118.t1 | MTR_1g067750 | 39.813 | 535 | 239 | 13 | 1 | 458 | 1 | 529 | 3.99e-111 | 338 |
| MS.gene61118.t1 | MTR_7g023750 | 38.391 | 547 | 243 | 14 | 1 | 463 | 1 | 537 | 2.04e-106 | 327 |
| MS.gene61118.t1 | MTR_7g023750 | 38.122 | 543 | 242 | 14 | 5 | 463 | 2 | 534 | 5.20e-104 | 320 |
| MS.gene61118.t1 | MTR_1g067750 | 38.402 | 513 | 233 | 13 | 10 | 445 | 1 | 507 | 6.10e-98 | 304 |
| MS.gene61118.t1 | MTR_7g023750 | 37.525 | 501 | 219 | 14 | 47 | 463 | 1 | 491 | 1.75e-87 | 276 |
| MS.gene61118.t1 | MTR_1g067750 | 33.260 | 457 | 222 | 13 | 1 | 380 | 1 | 451 | 1.09e-59 | 202 |
| MS.gene61118.t1 | MTR_7g023750 | 32.273 | 440 | 205 | 13 | 1 | 357 | 1 | 430 | 6.09e-49 | 174 |
| MS.gene61118.t1 | MTR_1g067750 | 31.871 | 433 | 213 | 12 | 1 | 357 | 1 | 427 | 1.58e-48 | 172 |
| MS.gene61118.t1 | MTR_7g023750 | 31.808 | 437 | 205 | 13 | 4 | 357 | 1 | 427 | 1.41e-46 | 168 |
| MS.gene61118.t1 | MTR_1g068930 | 46.043 | 139 | 74 | 1 | 318 | 455 | 241 | 379 | 7.33e-38 | 147 |
| MS.gene61118.t1 | MTR_1g068930 | 46.377 | 138 | 73 | 1 | 319 | 455 | 242 | 379 | 9.11e-38 | 147 |
| MS.gene61118.t1 | MTR_7g023750 | 31.633 | 392 | 173 | 15 | 50 | 357 | 4 | 384 | 7.57e-31 | 124 |
| MS.gene61118.t1 | MTR_7g102610 | 33.835 | 133 | 85 | 2 | 312 | 441 | 228 | 360 | 1.86e-16 | 82.8 |
| MS.gene61118.t1 | MTR_1g062330 | 32.624 | 141 | 89 | 2 | 318 | 452 | 82 | 222 | 3.01e-14 | 75.5 |
| MS.gene61118.t1 | MTR_1g062330 | 32.624 | 141 | 89 | 2 | 318 | 452 | 82 | 222 | 3.52e-14 | 75.5 |
| MS.gene61118.t1 | MTR_2g084410 | 32.110 | 109 | 68 | 1 | 331 | 433 | 23 | 131 | 6.88e-14 | 72.4 |
| MS.gene61118.t1 | MTR_2g084375 | 31.193 | 109 | 69 | 1 | 331 | 433 | 9 | 117 | 7.61e-14 | 72.0 |
| MS.gene61118.t1 | MTR_2g084425 | 31.200 | 125 | 79 | 2 | 326 | 444 | 221 | 344 | 1.14e-13 | 73.9 |
| MS.gene61118.t1 | MTR_2g084425 | 31.200 | 125 | 79 | 2 | 326 | 444 | 221 | 344 | 1.25e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61118.t1 | AT5G59830 | 44.255 | 470 | 213 | 11 | 1 | 466 | 1 | 425 | 8.53e-122 | 362 |
| MS.gene61118.t1 | AT5G59830 | 44.255 | 470 | 213 | 11 | 1 | 466 | 1 | 425 | 8.53e-122 | 362 |
| MS.gene61118.t1 | AT5G59830 | 44.255 | 470 | 213 | 11 | 1 | 466 | 1 | 425 | 8.53e-122 | 362 |
| MS.gene61118.t1 | AT5G13660 | 46.429 | 224 | 116 | 2 | 245 | 466 | 314 | 535 | 1.17e-58 | 202 |
| MS.gene61118.t1 | AT5G13660 | 46.637 | 223 | 116 | 2 | 245 | 466 | 314 | 534 | 1.44e-58 | 201 |
| MS.gene61118.t1 | AT3G53680 | 41.808 | 177 | 94 | 4 | 281 | 449 | 126 | 301 | 3.81e-37 | 145 |
| MS.gene61118.t1 | AT3G53680 | 41.808 | 177 | 94 | 4 | 281 | 449 | 126 | 301 | 3.95e-37 | 145 |
| MS.gene61118.t1 | AT2G37520 | 46.565 | 131 | 69 | 1 | 330 | 459 | 171 | 301 | 5.62e-35 | 139 |
| MS.gene61118.t1 | AT5G13660 | 36.496 | 137 | 83 | 2 | 245 | 379 | 314 | 448 | 3.77e-17 | 84.0 |
| MS.gene61118.t1 | AT5G13660 | 36.765 | 136 | 83 | 2 | 245 | 379 | 314 | 447 | 4.87e-17 | 83.6 |
| MS.gene61118.t1 | AT5G13660 | 36.765 | 136 | 83 | 2 | 245 | 379 | 314 | 447 | 4.87e-17 | 83.6 |
| MS.gene61118.t1 | AT2G36720 | 37.000 | 100 | 60 | 1 | 332 | 428 | 261 | 360 | 9.10e-14 | 74.3 |
| MS.gene61118.t1 | AT2G36720 | 37.000 | 100 | 60 | 1 | 332 | 428 | 261 | 360 | 9.10e-14 | 74.3 |
| MS.gene61118.t1 | AT2G27980 | 29.310 | 116 | 75 | 2 | 331 | 440 | 377 | 491 | 6.97e-11 | 65.5 |
Find 105 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTAATTGATCGATTATT+TGG | 0.067636 | 4.4:-42684924 | MS.gene61118:CDS |
| TCTGAACCATGTATGAATTT+TGG | 0.091302 | 4.4:-42684759 | MS.gene61118:CDS |
| ATCGATCAATTAATTGATTT+TGG | 0.128367 | 4.4:+42684931 | None:intergenic |
| CGTGAGCTTCAACGGATTTA+TGG | 0.136181 | 4.4:-42683527 | MS.gene61118:CDS |
| CGAAATGCTTTCTGATTTAT+TGG | 0.172704 | 4.4:+42683714 | None:intergenic |
| TTTGATATCTTGTTTATTCT+TGG | 0.187546 | 4.4:+42684248 | None:intergenic |
| GTGTCAAACAATGAACTTTC+AGG | 0.198974 | 4.4:+42683759 | None:intergenic |
| TTCCTGTACTATTTGATAAA+TGG | 0.243583 | 4.4:+42683794 | None:intergenic |
| TATGGAGATGGTGCATCTTT+TGG | 0.252084 | 4.4:-42684810 | MS.gene61118:CDS |
| CTTTACAAAACAAGGGATTC+TGG | 0.272026 | 4.4:-42685184 | MS.gene61118:CDS |
| ATCAGAAAGCATTTCGCATT+TGG | 0.289716 | 4.4:-42683707 | MS.gene61118:CDS |
| AGACCGTTTGGCACCCCTTA+TGG | 0.301042 | 4.4:-42684525 | MS.gene61118:CDS |
| TCTATTGCTTGCTTCTTGTT+TGG | 0.301219 | 4.4:+42685044 | None:intergenic |
| TCAAAATAAATGTGATTGTT+TGG | 0.311141 | 4.4:+42683828 | None:intergenic |
| GAACTTCGTGGAATTATAAA+AGG | 0.315503 | 4.4:-42684041 | MS.gene61118:CDS |
| AAGGGATTCTGGATGGTAAA+AGG | 0.325602 | 4.4:-42685173 | MS.gene61118:CDS |
| AACCATTGATGGGGTCGTTT+TGG | 0.327834 | 4.4:+42685095 | None:intergenic |
| GAGATAGCACCCTGTTCATC+TGG | 0.331410 | 4.4:+42684423 | None:intergenic |
| GAGACAAATATAATTTCTTT+TGG | 0.334047 | 4.4:-42684453 | MS.gene61118:CDS |
| AAGATGATCGCAAATCATTA+TGG | 0.336592 | 4.4:-42684828 | MS.gene61118:CDS |
| TGGTGGGTTCCCAGATGAAC+AGG | 0.346993 | 4.4:-42684433 | MS.gene61118:CDS |
| TTGCATCAATTAACCATTGA+TGG | 0.347456 | 4.4:+42685084 | None:intergenic |
| TGTTATCTACTTTGCCATAA+GGG | 0.349075 | 4.4:+42684511 | None:intergenic |
| TTATTCTTGGACATAGATTC+AGG | 0.367033 | 4.4:+42684261 | None:intergenic |
| TTCTGGATGGTAAAAGGATC+TGG | 0.378698 | 4.4:-42685167 | MS.gene61118:CDS |
| GAGACGAGATCTGGATCAAC+AGG | 0.382783 | 4.4:-42684618 | MS.gene61118:CDS |
| ATCAAGCTCCTGACATTAGT+AGG | 0.391092 | 4.4:+42684195 | None:intergenic |
| CAAGAAAGTCAAAGTAAATC+AGG | 0.395208 | 4.4:-42684730 | MS.gene61118:CDS |
| AATTAATTGATCGATTATTT+GGG | 0.397385 | 4.4:-42684923 | MS.gene61118:CDS |
| GTGTTATCTACTTTGCCATA+AGG | 0.399952 | 4.4:+42684510 | None:intergenic |
| ACATTAGTAGGGAAGGTGTT+TGG | 0.404286 | 4.4:+42684207 | None:intergenic |
| GGGGAAGTTGAGACGAGATC+TGG | 0.422910 | 4.4:-42684627 | MS.gene61118:CDS |
| ATCAAATAGTACAGGAATTG+AGG | 0.425574 | 4.4:-42683788 | MS.gene61118:CDS |
| AATACCTACGTTTCGGGCGA+TGG | 0.429341 | 4.4:-42684867 | MS.gene61118:CDS |
| AGGGTGCTATCTCTGTGGGC+AGG | 0.434956 | 4.4:-42684413 | MS.gene61118:CDS |
| AAAGGAACTACCTATCTTTG+TGG | 0.443908 | 4.4:-42684023 | MS.gene61118:CDS |
| CTTGCAGTCTTTACAAAACA+AGG | 0.446967 | 4.4:-42685192 | MS.gene61118:intron |
| TGACTGACACCCACAAAGAT+AGG | 0.451929 | 4.4:+42684013 | None:intergenic |
| ATATCTACTGGTATGCTAGA+TGG | 0.454824 | 4.4:-42684174 | MS.gene61118:CDS |
| GATGCCCGTATCAGACCGTT+TGG | 0.458600 | 4.4:-42684537 | MS.gene61118:CDS |
| GCAAATGAAAGATCTAGTTC+AGG | 0.460327 | 4.4:-42685017 | MS.gene61118:CDS |
| ATGGGACTTGCCTATGGCAG+TGG | 0.470833 | 4.4:-42684561 | MS.gene61118:CDS |
| TTGGAAGGATTATCAAATAC+CGG | 0.471437 | 4.4:+42685125 | None:intergenic |
| TTCAGTGAAATTGACAGGCC+TGG | 0.472169 | 4.4:+42684893 | None:intergenic |
| GGGTGCCAAACGGTCTGATA+CGG | 0.474649 | 4.4:+42684532 | None:intergenic |
| GTCAGGAGCTTGATATCTAC+TGG | 0.476574 | 4.4:-42684186 | MS.gene61118:CDS |
| GATCTACACCATGTCTATCA+TGG | 0.482318 | 4.4:-42684648 | MS.gene61118:CDS |
| TGTCAAACAATGAACTTTCA+GGG | 0.482656 | 4.4:+42683760 | None:intergenic |
| TGTAGTTGCAAGTACTCCTT+TGG | 0.489839 | 4.4:-42684298 | MS.gene61118:CDS |
| TTATGGATGCAGGAACTTCG+TGG | 0.493198 | 4.4:-42684053 | MS.gene61118:intron |
| TGCATCAATTAACCATTGAT+GGG | 0.498983 | 4.4:+42685085 | None:intergenic |
| GATTATTTGGGTCTGAAACC+AGG | 0.501220 | 4.4:-42684911 | MS.gene61118:CDS |
| ATCTACACCATGTCTATCAT+GGG | 0.502576 | 4.4:-42684647 | MS.gene61118:CDS |
| CTGTCAAAATTATGTTGCTC+TGG | 0.503021 | 4.4:+42684684 | None:intergenic |
| CAGCAACACGTGAGCTTCAA+CGG | 0.506790 | 4.4:-42683535 | MS.gene61118:CDS |
| GGGTGCTATCTCTGTGGGCA+GGG | 0.508071 | 4.4:-42684412 | MS.gene61118:CDS |
| AACCAAAACGACCCCATCAA+TGG | 0.512341 | 4.4:-42685097 | MS.gene61118:CDS |
| GAAGTATGTCTCGGTGGCGC+GGG | 0.512915 | 4.4:-42684142 | MS.gene61118:CDS |
| ACGGGCATCCCCACTGCCAT+AGG | 0.513675 | 4.4:+42684551 | None:intergenic |
| TCTGGAGCTTGCACATCACT+AGG | 0.513874 | 4.4:+42684702 | None:intergenic |
| AAGGAACTACCTATCTTTGT+GGG | 0.520214 | 4.4:-42684022 | MS.gene61118:CDS |
| TATAAGATTCAGCAATGGAT+AGG | 0.522976 | 4.4:+42684484 | None:intergenic |
| GTTATCTACTTTGCCATAAG+GGG | 0.524676 | 4.4:+42684512 | None:intergenic |
| GACCATTTATCAAATAGTAC+AGG | 0.526696 | 4.4:-42683796 | MS.gene61118:CDS |
| TGAAGTATGTCTCGGTGGCG+CGG | 0.530846 | 4.4:-42684143 | MS.gene61118:CDS |
| GACATTGCCATCCTTGTCAA+AGG | 0.543189 | 4.4:+42684590 | None:intergenic |
| TTGCCATAAGGGGTGCCAAA+CGG | 0.546220 | 4.4:+42684522 | None:intergenic |
| TGGGACTTGCCTATGGCAGT+GGG | 0.549439 | 4.4:-42684560 | MS.gene61118:CDS |
| GGTGCCAAACGGTCTGATAC+GGG | 0.551701 | 4.4:+42684533 | None:intergenic |
| AAAGCATTTCGCATTTGGAA+AGG | 0.553389 | 4.4:-42683702 | MS.gene61118:intron |
| TGGTTAATTGATGCAACTGA+AGG | 0.554560 | 4.4:-42685077 | MS.gene61118:CDS |
| AACAGCTCATGAGAAAGAGT+TGG | 0.557874 | 4.4:-42684337 | MS.gene61118:CDS |
| ACACCTTCCCTACTAATGTC+AGG | 0.559082 | 4.4:-42684203 | MS.gene61118:CDS |
| ATCGCAAATCATTATGGAGA+TGG | 0.565757 | 4.4:-42684822 | MS.gene61118:CDS |
| TTCGAGTTTGAAAAGCATGC+TGG | 0.566420 | 4.4:-42683867 | MS.gene61118:CDS |
| GGGCAAGCCTTTGACAAGGA+TGG | 0.567272 | 4.4:-42684597 | MS.gene61118:CDS |
| GGTTAATTGATGCAACTGAA+GGG | 0.567822 | 4.4:-42685076 | MS.gene61118:CDS |
| GTATGTCTCGGTGGCGCGGG+AGG | 0.577134 | 4.4:-42684139 | MS.gene61118:intron |
| TCTGGATGGTAAAAGGATCT+GGG | 0.577994 | 4.4:-42685166 | MS.gene61118:CDS |
| ACAAAACAAGGGATTCTGGA+TGG | 0.579040 | 4.4:-42685180 | MS.gene61118:CDS |
| GTTAATTGATGCAACTGAAG+GGG | 0.584842 | 4.4:-42685075 | MS.gene61118:CDS |
| GAACAGGGTGCTATCTCTGT+GGG | 0.585928 | 4.4:-42684417 | MS.gene61118:CDS |
| AGAACCATCGCCCGAAACGT+AGG | 0.586722 | 4.4:+42684863 | None:intergenic |
| GGTGGGTTCCCAGATGAACA+GGG | 0.587135 | 4.4:-42684432 | MS.gene61118:CDS |
| GCATGTTAGTGACAGAGAGC+CGG | 0.592024 | 4.4:-42685144 | MS.gene61118:CDS |
| AAATTGTGATTGTTCTCCCA+CGG | 0.592315 | 4.4:+42684972 | None:intergenic |
| TCAAGCTCCTGACATTAGTA+GGG | 0.592776 | 4.4:+42684196 | None:intergenic |
| GCTCCTGACATTAGTAGGGA+AGG | 0.594371 | 4.4:+42684200 | None:intergenic |
| AGATAGCACCCTGTTCATCT+GGG | 0.596294 | 4.4:+42684424 | None:intergenic |
| TTGCAGTCTTTACAAAACAA+GGG | 0.608181 | 4.4:-42685191 | MS.gene61118:intron |
| TTTATTATAAGATTCAGCAA+TGG | 0.610633 | 4.4:+42684479 | None:intergenic |
| CAACTTCCCCATGATAGACA+TGG | 0.618862 | 4.4:+42684640 | None:intergenic |
| TCAGTCATGTAACTATTCCA+AGG | 0.620903 | 4.4:-42683997 | MS.gene61118:intron |
| ATATGACTGTTCATAGTCTG+TGG | 0.620918 | 4.4:+42684386 | None:intergenic |
| GCCACCGAGACATACTTCAC+AGG | 0.621034 | 4.4:+42684147 | None:intergenic |
| GTCAAACAATGAACTTTCAG+GGG | 0.632047 | 4.4:+42683761 | None:intergenic |
| GCATCAATTAACCATTGATG+GGG | 0.640080 | 4.4:+42685086 | None:intergenic |
| AACAGGGCAAGCCTTTGACA+AGG | 0.649294 | 4.4:-42684601 | MS.gene61118:CDS |
| TGAACAGGGTGCTATCTCTG+TGG | 0.661663 | 4.4:-42684418 | MS.gene61118:CDS |
| GGGACTTGCCTATGGCAGTG+GGG | 0.687403 | 4.4:-42684559 | MS.gene61118:CDS |
| TGTTCCTGTGAAGTATGTCT+CGG | 0.693290 | 4.4:-42684151 | MS.gene61118:CDS |
| TCCTGTGAAGTATGTCTCGG+TGG | 0.694815 | 4.4:-42684148 | MS.gene61118:CDS |
| TCTACACCATGTCTATCATG+GGG | 0.701654 | 4.4:-42684646 | MS.gene61118:CDS |
| AACAAGATATCAAATCAACA+AGG | 0.715980 | 4.4:-42684239 | MS.gene61118:CDS |
| AGACGAGATCTGGATCAACA+GGG | 0.736721 | 4.4:-42684617 | MS.gene61118:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGAATATAACTTATAA+AGG | + | chr4.4:42684946-42684965 | None:intergenic | 10.0% |
| !! | TTTATAAGTTATATTCTTTA+TGG | - | chr4.4:42684945-42684964 | MS.gene61118:CDS | 10.0% |
| !!! | AAATGTTTAATTTTATTGTT+TGG | - | chr4.4:42685387-42685406 | MS.gene61118:intron | 10.0% |
| !!! | AATGTTTAATTTTATTGTTT+GGG | - | chr4.4:42685388-42685407 | MS.gene61118:intron | 10.0% |
| !! | AATTAATTGATCGATTATTT+GGG | - | chr4.4:42684092-42684111 | MS.gene61118:intron | 15.0% |
| !! | TAAAAAAACAAAAAACAACT+TGG | + | chr4.4:42683694-42683713 | None:intergenic | 15.0% |
| !!! | ATTTTATACAATGCAATAAT+AGG | - | chr4.4:42683623-42683642 | MS.gene61118:intron | 15.0% |
| !!! | TCTTTTTTTTAAATGTTCTT+GGG | + | chr4.4:42683547-42683566 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTTTAAATGTTCT+TGG | + | chr4.4:42683548-42683567 | None:intergenic | 15.0% |
| !!! | TTTGATGTTTTATATTATCA+GGG | - | chr4.4:42685115-42685134 | MS.gene61118:CDS | 15.0% |
| !! | ATTGCATTGTATAAAATACA+AGG | + | chr4.4:42683620-42683639 | None:intergenic | 20.0% |
| !! | CAATTAATTGATCGATTATT+TGG | - | chr4.4:42684091-42684110 | MS.gene61118:intron | 20.0% |
| !! | CTGATAATATAAAACATCAA+AGG | + | chr4.4:42685116-42685135 | None:intergenic | 20.0% |
| !! | TCAAAATAAATGTGATTGTT+TGG | + | chr4.4:42685190-42685209 | None:intergenic | 20.0% |
| !! | TTGCATTGTATAAAATACAA+GGG | + | chr4.4:42683619-42683638 | None:intergenic | 20.0% |
| !! | TTTATTATAAGATTCAGCAA+TGG | + | chr4.4:42684539-42684558 | None:intergenic | 20.0% |
| !!! | AATCACATTTATTTTGAGAA+TGG | - | chr4.4:42685193-42685212 | MS.gene61118:intron | 20.0% |
| !!! | ACAAATATAATTTCTTTTGG+TGG | - | chr4.4:42684565-42684584 | MS.gene61118:CDS | 20.0% |
| !!! | ATCACATTTATTTTGAGAAT+GGG | - | chr4.4:42685194-42685213 | MS.gene61118:intron | 20.0% |
| !!! | ATCGATCAATTAATTGATTT+TGG | + | chr4.4:42684087-42684106 | None:intergenic | 20.0% |
| !!! | CAAATATAATTTCTTTTGGT+GGG | - | chr4.4:42684566-42684585 | MS.gene61118:CDS | 20.0% |
| !!! | CTTTGATGTTTTATATTATC+AGG | - | chr4.4:42685114-42685133 | MS.gene61118:CDS | 20.0% |
| !!! | GAGACAAATATAATTTCTTT+TGG | - | chr4.4:42684562-42684581 | MS.gene61118:CDS | 20.0% |
| !!! | TTTGATATCTTGTTTATTCT+TGG | + | chr4.4:42684770-42684789 | None:intergenic | 20.0% |
| ! | AAAAACAAAAAACAACTTGG+TGG | + | chr4.4:42683691-42683710 | None:intergenic | 25.0% |
| ! | AACAAGATATCAAATCAACA+AGG | - | chr4.4:42684776-42684795 | MS.gene61118:CDS | 25.0% |
| ! | AGACAGTGATAAGTTAATAA+TGG | + | chr4.4:42683517-42683536 | None:intergenic | 25.0% |
| ! | GCAAGAGTTACAAAAAAAAT+GGG | + | chr4.4:42685435-42685454 | None:intergenic | 25.0% |
| ! | TATTAACTTATCACTGTCTA+AGG | - | chr4.4:42683518-42683537 | MS.gene61118:CDS | 25.0% |
| ! | TGAAAAAAATACCTACGTTT+CGG | - | chr4.4:42684141-42684160 | MS.gene61118:CDS | 25.0% |
| ! | TGCATTGTATAAAATACAAG+GGG | + | chr4.4:42683618-42683637 | None:intergenic | 25.0% |
| ! | TTCCTGTACTATTTGATAAA+TGG | + | chr4.4:42685224-42685243 | None:intergenic | 25.0% |
| ! | TTGAAAACCATTAAGATGTT+TGG | + | chr4.4:42685071-42685090 | None:intergenic | 25.0% |
| !! | AAATGTAAATTTTACTCCGT+GGG | - | chr4.4:42684027-42684046 | MS.gene61118:CDS | 25.0% |
| !!! | GATCAATTAATTGATTTTGG+TGG | + | chr4.4:42684084-42684103 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAGTGAAATTGAC+AGG | + | chr4.4:42684130-42684149 | None:intergenic | 25.0% |
| AAACATCAAAGGTAATCTAC+AGG | + | chr4.4:42685105-42685124 | None:intergenic | 30.0% | |
| AAGATGATCGCAAATCATTA+TGG | - | chr4.4:42684187-42684206 | MS.gene61118:CDS | 30.0% | |
| ATCAAATAGTACAGGAATTG+AGG | - | chr4.4:42685227-42685246 | MS.gene61118:intron | 30.0% | |
| CAAGAAAGTCAAAGTAAATC+AGG | - | chr4.4:42684285-42684304 | MS.gene61118:CDS | 30.0% | |
| CGAAATGCTTTCTGATTTAT+TGG | + | chr4.4:42685304-42685323 | None:intergenic | 30.0% | |
| GAAAAAAATACCTACGTTTC+GGG | - | chr4.4:42684142-42684161 | MS.gene61118:CDS | 30.0% | |
| GAACTTCGTGGAATTATAAA+AGG | - | chr4.4:42684974-42684993 | MS.gene61118:CDS | 30.0% | |
| GACCATTTATCAAATAGTAC+AGG | - | chr4.4:42685219-42685238 | MS.gene61118:intron | 30.0% | |
| GGCAAGAGTTACAAAAAAAA+TGG | + | chr4.4:42685436-42685455 | None:intergenic | 30.0% | |
| GTTATATTCTTTATGGATGC+AGG | - | chr4.4:42684952-42684971 | MS.gene61118:CDS | 30.0% | |
| TAGTCTGTTTGTGCTTAAAA+AGG | + | chr4.4:42685354-42685373 | None:intergenic | 30.0% | |
| TATAAAATACAAGGGGAAGA+GGG | + | chr4.4:42683611-42683630 | None:intergenic | 30.0% | |
| TATAAGATTCAGCAATGGAT+AGG | + | chr4.4:42684534-42684553 | None:intergenic | 30.0% | |
| TGCATCAATTAACCATTGAT+GGG | + | chr4.4:42683933-42683952 | None:intergenic | 30.0% | |
| TGTCAAACAATGAACTTTCA+GGG | + | chr4.4:42685258-42685277 | None:intergenic | 30.0% | |
| TGTTATCTACTTTGCCATAA+GGG | + | chr4.4:42684507-42684526 | None:intergenic | 30.0% | |
| TTAATCAATCCAACTGACAT+AGG | + | chr4.4:42683733-42683752 | None:intergenic | 30.0% | |
| TTATTCTTGGACATAGATTC+AGG | + | chr4.4:42684757-42684776 | None:intergenic | 30.0% | |
| TTGCAGTCTTTACAAAACAA+GGG | - | chr4.4:42683824-42683843 | MS.gene61118:CDS | 30.0% | |
| TTGCATCAATTAACCATTGA+TGG | + | chr4.4:42683934-42683953 | None:intergenic | 30.0% | |
| TTGGAAGGATTATCAAATAC+CGG | + | chr4.4:42683893-42683912 | None:intergenic | 30.0% | |
| TTTAAGCACAAACAGACTAA+CGG | - | chr4.4:42685355-42685374 | MS.gene61118:intron | 30.0% | |
| ! | CAAATGTAAATTTTACTCCG+TGG | - | chr4.4:42684026-42684045 | MS.gene61118:CDS | 30.0% |
| ! | CTGAACCATGTATGAATTTT+GGG | - | chr4.4:42684257-42684276 | MS.gene61118:CDS | 30.0% |
| ! | GACACAATCCAAACAATTTT+TGG | - | chr4.4:42685274-42685293 | MS.gene61118:intron | 30.0% |
| ! | TCTGAACCATGTATGAATTT+TGG | - | chr4.4:42684256-42684275 | MS.gene61118:CDS | 30.0% |
| ! | TGAACCATGTATGAATTTTG+GGG | - | chr4.4:42684258-42684277 | MS.gene61118:CDS | 30.0% |
| !! | ATTAATTGATTTTGGTGGCT+TGG | + | chr4.4:42684079-42684098 | None:intergenic | 30.0% |
| !! | TTAATTGATTTTGGTGGCTT+GGG | + | chr4.4:42684078-42684097 | None:intergenic | 30.0% |
| !! | TTTTATTGTTTGGGCTTGTT+TGG | - | chr4.4:42685397-42685416 | MS.gene61118:intron | 30.0% |
| !!! | GATGGCAATGTCATTTTAAT+GGG | - | chr4.4:42684436-42684455 | MS.gene61118:CDS | 30.0% |
| !!! | TTTTTTGTAACTCTTGCCAA+TGG | - | chr4.4:42685438-42685457 | MS.gene61118:intron | 30.0% |
| AAAGGAACTACCTATCTTTG+TGG | - | chr4.4:42684992-42685011 | MS.gene61118:CDS | 35.0% | |
| AAATTGTGATTGTTCTCCCA+CGG | + | chr4.4:42684046-42684065 | None:intergenic | 35.0% | |
| AAGGAACTACCTATCTTTGT+GGG | - | chr4.4:42684993-42685012 | MS.gene61118:CDS | 35.0% | |
| ACTCTGACCAAACATCTTAA+TGG | - | chr4.4:42685061-42685080 | MS.gene61118:CDS | 35.0% | |
| ATAAAATACAAGGGGAAGAG+GGG | + | chr4.4:42683610-42683629 | None:intergenic | 35.0% | |
| ATATCTACTGGTATGCTAGA+TGG | - | chr4.4:42684841-42684860 | MS.gene61118:CDS | 35.0% | |
| ATATGACTGTTCATAGTCTG+TGG | + | chr4.4:42684632-42684651 | None:intergenic | 35.0% | |
| ATCCAACTGACATAGGATAA+AGG | + | chr4.4:42683726-42683745 | None:intergenic | 35.0% | |
| ATCGCAAATCATTATGGAGA+TGG | - | chr4.4:42684193-42684212 | MS.gene61118:CDS | 35.0% | |
| ATCTACACCATGTCTATCAT+GGG | - | chr4.4:42684368-42684387 | MS.gene61118:CDS | 35.0% | |
| ATTCCCCCAAAATTCATACA+TGG | + | chr4.4:42684265-42684284 | None:intergenic | 35.0% | |
| CTGTCAAAATTATGTTGCTC+TGG | + | chr4.4:42684334-42684353 | None:intergenic | 35.0% | |
| CTGTTTGTGCTTAAAAAGGT+CGG | + | chr4.4:42685350-42685369 | None:intergenic | 35.0% | |
| CTTGCAGTCTTTACAAAACA+AGG | - | chr4.4:42683823-42683842 | MS.gene61118:CDS | 35.0% | |
| CTTTACAAAACAAGGGATTC+TGG | - | chr4.4:42683831-42683850 | MS.gene61118:CDS | 35.0% | |
| GCATCAATTAACCATTGATG+GGG | + | chr4.4:42683932-42683951 | None:intergenic | 35.0% | |
| GGTTAATTGATGCAACTGAA+GGG | - | chr4.4:42683939-42683958 | MS.gene61118:intron | 35.0% | |
| GTATAAAATACAAGGGGAAG+AGG | + | chr4.4:42683612-42683631 | None:intergenic | 35.0% | |
| GTCAAACAATGAACTTTCAG+GGG | + | chr4.4:42685257-42685276 | None:intergenic | 35.0% | |
| GTGTCAAACAATGAACTTTC+AGG | + | chr4.4:42685259-42685278 | None:intergenic | 35.0% | |
| GTGTTATCTACTTTGCCATA+AGG | + | chr4.4:42684508-42684527 | None:intergenic | 35.0% | |
| GTTAATTGATGCAACTGAAG+GGG | - | chr4.4:42683940-42683959 | MS.gene61118:intron | 35.0% | |
| GTTATCTACTTTGCCATAAG+GGG | + | chr4.4:42684506-42684525 | None:intergenic | 35.0% | |
| TCAGTCATGTAACTATTCCA+AGG | - | chr4.4:42685018-42685037 | MS.gene61118:CDS | 35.0% | |
| TCTATTGCTTGCTTCTTGTT+TGG | + | chr4.4:42683974-42683993 | None:intergenic | 35.0% | |
| TGGTTAATTGATGCAACTGA+AGG | - | chr4.4:42683938-42683957 | MS.gene61118:intron | 35.0% | |
| TTCCAAGGTTAGTAATCCAT+TGG | - | chr4.4:42685033-42685052 | MS.gene61118:CDS | 35.0% | |
| TTGGTGCACCAAAAATTGTT+TGG | + | chr4.4:42685285-42685304 | None:intergenic | 35.0% | |
| ! | AAAGCATTTCGCATTTGGAA+AGG | - | chr4.4:42685313-42685332 | MS.gene61118:intron | 35.0% |
| ! | GAAATGATTCTGAAGACCAT+TGG | + | chr4.4:42685457-42685476 | None:intergenic | 35.0% |
| ! | GAACCATGTATGAATTTTGG+GGG | - | chr4.4:42684259-42684278 | MS.gene61118:CDS | 35.0% |
| ! | GCAAATGAAAGATCTAGTTC+AGG | - | chr4.4:42683998-42684017 | MS.gene61118:CDS | 35.0% |
| !! | AATTTTGACAGGCAGAGTAT+GGG | - | chr4.4:42684343-42684362 | MS.gene61118:CDS | 35.0% |
| !! | ATCAGAAAGCATTTCGCATT+TGG | - | chr4.4:42685308-42685327 | MS.gene61118:intron | 35.0% |
| !! | ATTTTAATGGGACTTGCCTA+TGG | - | chr4.4:42684448-42684467 | MS.gene61118:CDS | 35.0% |
| !! | CAGAGCAACATAATTTTGAC+AGG | - | chr4.4:42684332-42684351 | MS.gene61118:CDS | 35.0% |
| !! | TAATTTTGACAGGCAGAGTA+TGG | - | chr4.4:42684342-42684361 | MS.gene61118:CDS | 35.0% |
| !! | TACCAATGGATTACTAACCT+TGG | + | chr4.4:42685038-42685057 | None:intergenic | 35.0% |
| !!! | GGATGGCAATGTCATTTTAA+TGG | - | chr4.4:42684435-42684454 | MS.gene61118:CDS | 35.0% |
| AACAGCTCATGAGAAAGAGT+TGG | - | chr4.4:42684678-42684697 | MS.gene61118:CDS | 40.0% | |
| AAGGGATTCTGGATGGTAAA+AGG | - | chr4.4:42683842-42683861 | MS.gene61118:CDS | 40.0% | |
| ACAAAACAAGGGATTCTGGA+TGG | - | chr4.4:42683835-42683854 | MS.gene61118:CDS | 40.0% | |
| ATCAAGCTCCTGACATTAGT+AGG | + | chr4.4:42684823-42684842 | None:intergenic | 40.0% | |
| CAACTGACATAGGATAAAGG+AGG | + | chr4.4:42683723-42683742 | None:intergenic | 40.0% | |
| CTCCTTTATCCTATGTCAGT+TGG | - | chr4.4:42683721-42683740 | MS.gene61118:CDS | 40.0% | |
| GATCTACACCATGTCTATCA+TGG | - | chr4.4:42684367-42684386 | MS.gene61118:CDS | 40.0% | |
| TCAAGCTCCTGACATTAGTA+GGG | + | chr4.4:42684822-42684841 | None:intergenic | 40.0% | |
| TCTACACCATGTCTATCATG+GGG | - | chr4.4:42684369-42684388 | MS.gene61118:CDS | 40.0% | |
| TCTGGATGGTAAAAGGATCT+GGG | - | chr4.4:42683849-42683868 | MS.gene61118:CDS | 40.0% | |
| TGTAGTTGCAAGTACTCCTT+TGG | - | chr4.4:42684717-42684736 | MS.gene61118:CDS | 40.0% | |
| TGTTCCTGTGAAGTATGTCT+CGG | - | chr4.4:42684864-42684883 | MS.gene61118:CDS | 40.0% | |
| TTCTGGATGGTAAAAGGATC+TGG | - | chr4.4:42683848-42683867 | MS.gene61118:CDS | 40.0% | |
| TTGGTCAGAGTGTATACCAA+TGG | + | chr4.4:42685052-42685071 | None:intergenic | 40.0% | |
| ! | GATTATTTGGGTCTGAAACC+AGG | - | chr4.4:42684104-42684123 | MS.gene61118:intron | 40.0% |
| ! | TATGGAGATGGTGCATCTTT+TGG | - | chr4.4:42684205-42684224 | MS.gene61118:CDS | 40.0% |
| ! | TTCGAGTTTGAAAAGCATGC+TGG | - | chr4.4:42685148-42685167 | MS.gene61118:CDS | 40.0% |
| !! | ACATTAGTAGGGAAGGTGTT+TGG | + | chr4.4:42684811-42684830 | None:intergenic | 40.0% |
| !!! | CGTTTTGGTTCGATTTTGGA+AGG | + | chr4.4:42683908-42683927 | None:intergenic | 40.0% |
| !!! | GGCTTTTTTGTTGTCACCAA+AGG | + | chr4.4:42684736-42684755 | None:intergenic | 40.0% |
| AAACAGACTAACGGCTGCAT+AGG | - | chr4.4:42685364-42685383 | MS.gene61118:intron | 45.0% | |
| AACCAAAACGACCCCATCAA+TGG | - | chr4.4:42683918-42683937 | MS.gene61118:intron | 45.0% | |
| ACACCTTCCCTACTAATGTC+AGG | - | chr4.4:42684812-42684831 | MS.gene61118:CDS | 45.0% | |
| AGACGAGATCTGGATCAACA+GGG | - | chr4.4:42684398-42684417 | MS.gene61118:CDS | 45.0% | |
| AGATAGCACCCTGTTCATCT+GGG | + | chr4.4:42684594-42684613 | None:intergenic | 45.0% | |
| CAACTTCCCCATGATAGACA+TGG | + | chr4.4:42684378-42684397 | None:intergenic | 45.0% | |
| GACATTGCCATCCTTGTCAA+AGG | + | chr4.4:42684428-42684447 | None:intergenic | 45.0% | |
| GTCAGGAGCTTGATATCTAC+TGG | - | chr4.4:42684829-42684848 | MS.gene61118:CDS | 45.0% | |
| GTGGTATAAGTTTCCCGACA+TGG | + | chr4.4:42683672-42683691 | None:intergenic | 45.0% | |
| TGACTGACACCCACAAAGAT+AGG | + | chr4.4:42685005-42685024 | None:intergenic | 45.0% | |
| TTATGGATGCAGGAACTTCG+TGG | - | chr4.4:42684962-42684981 | MS.gene61118:CDS | 45.0% | |
| TTCAGTGAAATTGACAGGCC+TGG | + | chr4.4:42684125-42684144 | None:intergenic | 45.0% | |
| ! | AACCATTGATGGGGTCGTTT+TGG | + | chr4.4:42683923-42683942 | None:intergenic | 45.0% |
| ! | CGTGAGCTTCAACGGATTTA+TGG | - | chr4.4:42685488-42685507 | MS.gene61118:intron | 45.0% |
| !!! | GGGTCGTTTTGGTTCGATTT+TGG | + | chr4.4:42683912-42683931 | None:intergenic | 45.0% |
| AACAGGGCAAGCCTTTGACA+AGG | - | chr4.4:42684414-42684433 | MS.gene61118:CDS | 50.0% | |
| AATACCTACGTTTCGGGCGA+TGG | - | chr4.4:42684148-42684167 | MS.gene61118:CDS | 50.0% | |
| CAGCAACACGTGAGCTTCAA+CGG | - | chr4.4:42685480-42685499 | MS.gene61118:intron | 50.0% | |
| GAGACGAGATCTGGATCAAC+AGG | - | chr4.4:42684397-42684416 | MS.gene61118:CDS | 50.0% | |
| GAGATAGCACCCTGTTCATC+TGG | + | chr4.4:42684595-42684614 | None:intergenic | 50.0% | |
| GCATGTTAGTGACAGAGAGC+CGG | - | chr4.4:42683871-42683890 | MS.gene61118:CDS | 50.0% | |
| GCTCCTGACATTAGTAGGGA+AGG | + | chr4.4:42684818-42684837 | None:intergenic | 50.0% | |
| TCCCGACATGGCAGAGTATA+GGG | + | chr4.4:42683660-42683679 | None:intergenic | 50.0% | |
| TCCTGTGAAGTATGTCTCGG+TGG | - | chr4.4:42684867-42684886 | MS.gene61118:CDS | 50.0% | |
| TTCCCGACATGGCAGAGTAT+AGG | + | chr4.4:42683661-42683680 | None:intergenic | 50.0% | |
| ! | GAACAGGGTGCTATCTCTGT+GGG | - | chr4.4:42684598-42684617 | MS.gene61118:CDS | 50.0% |
| ! | TCTGGAGCTTGCACATCACT+AGG | + | chr4.4:42684316-42684335 | None:intergenic | 50.0% |
| ! | TGAACAGGGTGCTATCTCTG+TGG | - | chr4.4:42684597-42684616 | MS.gene61118:CDS | 50.0% |
| !! | TTGCCATAAGGGGTGCCAAA+CGG | + | chr4.4:42684496-42684515 | None:intergenic | 50.0% |
| AGAACCATCGCCCGAAACGT+AGG | + | chr4.4:42684155-42684174 | None:intergenic | 55.0% | |
| AGACCGTTTGGCACCCCTTA+TGG | - | chr4.4:42684490-42684509 | MS.gene61118:CDS | 55.0% | |
| ATGGCAGAGTATAGGGGGGA+AGG | + | chr4.4:42683653-42683672 | None:intergenic | 55.0% | |
| ATGGGACTTGCCTATGGCAG+TGG | - | chr4.4:42684454-42684473 | MS.gene61118:CDS | 55.0% | |
| CCCCCTATACTCTGCCATGT+CGG | - | chr4.4:42683655-42683674 | MS.gene61118:intron | 55.0% | |
| CCCCTATACTCTGCCATGTC+GGG | - | chr4.4:42683656-42683675 | MS.gene61118:intron | 55.0% | |
| CCCGACATGGCAGAGTATAG+GGG | + | chr4.4:42683659-42683678 | None:intergenic | 55.0% | |
| CCGACATGGCAGAGTATAGG+GGG | + | chr4.4:42683658-42683677 | None:intergenic | 55.0% | |
| CGACATGGCAGAGTATAGGG+GGG | + | chr4.4:42683657-42683676 | None:intergenic | 55.0% | |
| GATGCCCGTATCAGACCGTT+TGG | - | chr4.4:42684478-42684497 | MS.gene61118:CDS | 55.0% | |
| GCCACCGAGACATACTTCAC+AGG | + | chr4.4:42684871-42684890 | None:intergenic | 55.0% | |
| GGGCAAGCCTTTGACAAGGA+TGG | - | chr4.4:42684418-42684437 | MS.gene61118:CDS | 55.0% | |
| GGGGAAGTTGAGACGAGATC+TGG | - | chr4.4:42684388-42684407 | MS.gene61118:CDS | 55.0% | |
| GGGTGCCAAACGGTCTGATA+CGG | + | chr4.4:42684486-42684505 | None:intergenic | 55.0% | |
| GGTGCCAAACGGTCTGATAC+GGG | + | chr4.4:42684485-42684504 | None:intergenic | 55.0% | |
| TGAAGTATGTCTCGGTGGCG+CGG | - | chr4.4:42684872-42684891 | MS.gene61118:CDS | 55.0% | |
| TGGCAGAGTATAGGGGGGAA+GGG | + | chr4.4:42683652-42683671 | None:intergenic | 55.0% | |
| TGGGACTTGCCTATGGCAGT+GGG | - | chr4.4:42684455-42684474 | MS.gene61118:CDS | 55.0% | |
| ! | GGTGGGTTCCCAGATGAACA+GGG | - | chr4.4:42684583-42684602 | MS.gene61118:CDS | 55.0% |
| !! | TGGTGGGTTCCCAGATGAAC+AGG | - | chr4.4:42684582-42684601 | MS.gene61118:CDS | 55.0% |
| GAAGTATGTCTCGGTGGCGC+GGG | - | chr4.4:42684873-42684892 | MS.gene61118:CDS | 60.0% | |
| GGGACTTGCCTATGGCAGTG+GGG | - | chr4.4:42684456-42684475 | MS.gene61118:CDS | 60.0% | |
| ! | AGGGTGCTATCTCTGTGGGC+AGG | - | chr4.4:42684602-42684621 | MS.gene61118:CDS | 60.0% |
| ! | GGGTGCTATCTCTGTGGGCA+GGG | - | chr4.4:42684603-42684622 | MS.gene61118:CDS | 60.0% |
| ACGGGCATCCCCACTGCCAT+AGG | + | chr4.4:42684467-42684486 | None:intergenic | 65.0% | |
| GTATGTCTCGGTGGCGCGGG+AGG | - | chr4.4:42684876-42684895 | MS.gene61118:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 42683505 | 42685532 | 42683505 | ID=MS.gene61118 |
| chr4.4 | mRNA | 42683505 | 42685532 | 42683505 | ID=MS.gene61118.t1;Parent=MS.gene61118 |
| chr4.4 | exon | 42685530 | 42685532 | 42685530 | ID=MS.gene61118.t1.exon1;Parent=MS.gene61118.t1 |
| chr4.4 | CDS | 42685530 | 42685532 | 42685530 | ID=cds.MS.gene61118.t1;Parent=MS.gene61118.t1 |
| chr4.4 | exon | 42684140 | 42685207 | 42684140 | ID=MS.gene61118.t1.exon2;Parent=MS.gene61118.t1 |
| chr4.4 | CDS | 42684140 | 42685207 | 42684140 | ID=cds.MS.gene61118.t1;Parent=MS.gene61118.t1 |
| chr4.4 | exon | 42683998 | 42684063 | 42683998 | ID=MS.gene61118.t1.exon3;Parent=MS.gene61118.t1 |
| chr4.4 | CDS | 42683998 | 42684063 | 42683998 | ID=cds.MS.gene61118.t1;Parent=MS.gene61118.t1 |
| chr4.4 | exon | 42683703 | 42683901 | 42683703 | ID=MS.gene61118.t1.exon4;Parent=MS.gene61118.t1 |
| chr4.4 | CDS | 42683703 | 42683901 | 42683703 | ID=cds.MS.gene61118.t1;Parent=MS.gene61118.t1 |
| chr4.4 | exon | 42683505 | 42683569 | 42683505 | ID=MS.gene61118.t1.exon5;Parent=MS.gene61118.t1 |
| chr4.4 | CDS | 42683505 | 42683569 | 42683505 | ID=cds.MS.gene61118.t1;Parent=MS.gene61118.t1 |
| Gene Sequence |
| Protein sequence |
