Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62881.t1 | RHN63266.1 | 98.5 | 673 | 10 | 0 | 1 | 673 | 1 | 673 | 0.00E+00 | 1343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62881.t1 | Q940Y1 | 68.1 | 680 | 157 | 12 | 1 | 673 | 1 | 627 | 7.4e-262 | 904.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62881.t1 | A0A072UPM8 | 98.5 | 673 | 10 | 0 | 1 | 673 | 1 | 673 | 0.0e+00 | 1343.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67840 | MS.gene62881 | PPI |
| MS.gene81617 | MS.gene62881 | PPI |
| MS.gene37911 | MS.gene62881 | PPI |
| MS.gene070509 | MS.gene62881 | PPI |
| MS.gene81620 | MS.gene62881 | PPI |
| MS.gene070505 | MS.gene62881 | PPI |
| MS.gene057886 | MS.gene62881 | PPI |
| MS.gene81615 | MS.gene62881 | PPI |
| MS.gene070503 | MS.gene62881 | PPI |
| MS.gene070507 | MS.gene62881 | PPI |
| MS.gene070492 | MS.gene62881 | PPI |
| MS.gene070511 | MS.gene62881 | PPI |
| MS.gene81622 | MS.gene62881 | PPI |
| MS.gene016743 | MS.gene62881 | PPI |
| MS.gene057884 | MS.gene62881 | PPI |
| MS.gene057883 | MS.gene62881 | PPI |
| MS.gene016742 | MS.gene62881 | PPI |
| MS.gene070510 | MS.gene62881 | PPI |
| MS.gene016758 | MS.gene62881 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62881.t1 | MTR_4g101410 | 98.514 | 673 | 10 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1375 |
| MS.gene62881.t1 | MTR_4g101410 | 98.869 | 442 | 5 | 0 | 232 | 673 | 1 | 442 | 0.0 | 915 |
| MS.gene62881.t1 | MTR_3g073040 | 52.266 | 706 | 279 | 12 | 6 | 673 | 1 | 686 | 0.0 | 704 |
| MS.gene62881.t1 | MTR_3g073040 | 52.125 | 706 | 279 | 13 | 6 | 673 | 1 | 685 | 0.0 | 698 |
| MS.gene62881.t1 | MTR_5g459350 | 56.090 | 624 | 254 | 9 | 55 | 673 | 52 | 660 | 0.0 | 659 |
| MS.gene62881.t1 | MTR_3g086340 | 52.791 | 627 | 280 | 8 | 58 | 672 | 95 | 717 | 0.0 | 652 |
| MS.gene62881.t1 | MTR_3g097270 | 52.640 | 625 | 253 | 11 | 55 | 673 | 73 | 660 | 0.0 | 642 |
| MS.gene62881.t1 | MTR_3g073040 | 51.501 | 633 | 250 | 11 | 6 | 601 | 1 | 613 | 0.0 | 622 |
| MS.gene62881.t1 | MTR_3g086340 | 53.176 | 551 | 245 | 5 | 58 | 598 | 95 | 642 | 0.0 | 583 |
| MS.gene62881.t1 | MTR_4g064110 | 31.786 | 280 | 178 | 9 | 393 | 668 | 71 | 341 | 1.35e-30 | 125 |
| MS.gene62881.t1 | MTR_7g061830 | 32.042 | 284 | 176 | 9 | 391 | 668 | 73 | 345 | 1.43e-28 | 120 |
| MS.gene62881.t1 | MTR_4g115490 | 54.000 | 100 | 21 | 4 | 379 | 476 | 74 | 150 | 7.65e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62881.t1 | AT4G22540 | 68.088 | 680 | 157 | 12 | 1 | 673 | 1 | 627 | 0.0 | 923 |
| MS.gene62881.t1 | AT4G22540 | 68.088 | 680 | 157 | 12 | 1 | 673 | 1 | 627 | 0.0 | 923 |
| MS.gene62881.t1 | AT4G12460 | 65.331 | 649 | 167 | 9 | 31 | 673 | 3 | 599 | 0.0 | 860 |
| MS.gene62881.t1 | AT4G12460 | 65.331 | 649 | 167 | 9 | 31 | 673 | 3 | 599 | 0.0 | 857 |
| MS.gene62881.t1 | AT4G12460 | 65.331 | 649 | 167 | 9 | 31 | 673 | 3 | 599 | 0.0 | 857 |
| MS.gene62881.t1 | AT4G12460 | 65.231 | 650 | 167 | 10 | 31 | 673 | 3 | 600 | 0.0 | 855 |
| MS.gene62881.t1 | AT4G12460 | 65.231 | 650 | 167 | 10 | 31 | 673 | 3 | 600 | 0.0 | 853 |
| MS.gene62881.t1 | AT4G08180 | 56.982 | 623 | 256 | 6 | 55 | 673 | 106 | 720 | 0.0 | 711 |
| MS.gene62881.t1 | AT4G08180 | 56.982 | 623 | 256 | 6 | 55 | 673 | 106 | 720 | 0.0 | 711 |
| MS.gene62881.t1 | AT4G08180 | 56.982 | 623 | 255 | 7 | 55 | 673 | 106 | 719 | 0.0 | 705 |
| MS.gene62881.t1 | AT4G08180 | 56.982 | 623 | 255 | 7 | 55 | 673 | 106 | 719 | 0.0 | 705 |
| MS.gene62881.t1 | AT2G31020 | 50.485 | 721 | 270 | 15 | 6 | 673 | 1 | 687 | 0.0 | 671 |
| MS.gene62881.t1 | AT1G13170 | 53.071 | 635 | 277 | 8 | 50 | 672 | 90 | 715 | 0.0 | 669 |
| MS.gene62881.t1 | AT1G13170 | 51.372 | 656 | 277 | 9 | 50 | 672 | 90 | 736 | 0.0 | 656 |
| MS.gene62881.t1 | AT4G22540 | 69.604 | 454 | 98 | 5 | 221 | 673 | 2 | 416 | 0.0 | 655 |
| MS.gene62881.t1 | AT4G22540 | 69.604 | 454 | 98 | 5 | 221 | 673 | 2 | 416 | 0.0 | 655 |
| MS.gene62881.t1 | AT4G22540 | 69.604 | 454 | 98 | 5 | 221 | 673 | 2 | 416 | 0.0 | 655 |
| MS.gene62881.t1 | AT4G22540 | 69.604 | 454 | 98 | 5 | 221 | 673 | 2 | 416 | 0.0 | 655 |
| MS.gene62881.t1 | AT4G12460 | 67.108 | 453 | 106 | 4 | 221 | 673 | 2 | 411 | 0.0 | 634 |
| MS.gene62881.t1 | AT4G12460 | 67.108 | 453 | 106 | 4 | 221 | 673 | 2 | 411 | 0.0 | 634 |
| MS.gene62881.t1 | AT4G12460 | 67.108 | 453 | 106 | 4 | 221 | 673 | 2 | 411 | 0.0 | 634 |
| MS.gene62881.t1 | AT4G12460 | 80.645 | 279 | 48 | 1 | 395 | 673 | 1 | 273 | 3.12e-172 | 496 |
| MS.gene62881.t1 | AT2G31030 | 69.136 | 324 | 94 | 1 | 350 | 673 | 85 | 402 | 2.43e-166 | 486 |
| MS.gene62881.t1 | AT1G77730 | 35.242 | 227 | 136 | 4 | 48 | 272 | 47 | 264 | 2.13e-41 | 152 |
| MS.gene62881.t1 | AT5G02100 | 32.624 | 282 | 173 | 9 | 393 | 668 | 43 | 313 | 3.05e-33 | 133 |
| MS.gene62881.t1 | AT5G02100 | 32.624 | 282 | 173 | 9 | 393 | 668 | 70 | 340 | 3.91e-33 | 133 |
| MS.gene62881.t1 | AT3G09300 | 34.164 | 281 | 170 | 10 | 393 | 668 | 75 | 345 | 7.20e-33 | 132 |
| MS.gene62881.t1 | AT5G02100 | 33.333 | 246 | 150 | 7 | 393 | 632 | 70 | 307 | 5.04e-32 | 127 |
| MS.gene62881.t1 | AT5G59420 | 32.042 | 284 | 176 | 9 | 391 | 668 | 68 | 340 | 8.62e-30 | 123 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTGCCTTTGCTGTTTC+TGG | 0.052254 | 8.4:+23164535 | MS.gene62881:CDS |
| AAAATCCATTCTTTGTTAAT+TGG | 0.181482 | 8.4:-23162429 | None:intergenic |
| TTCCCCTAACAAGGGATTAA+AGG | 0.210036 | 8.4:-23164590 | None:intergenic |
| CTGACGGCGAAGAGCGTTTC+CGG | 0.254872 | 8.4:-23159160 | None:intergenic |
| AAGGTAGAGGATGGAGGTTT+TGG | 0.259692 | 8.4:+23165400 | MS.gene62881:CDS |
| GTAACATTCATTCAAAGTTT+TGG | 0.260982 | 8.4:+23165430 | MS.gene62881:CDS |
| AAGCCCTTTAATCCCTTGTT+AGG | 0.261850 | 8.4:+23164586 | MS.gene62881:CDS |
| TTTGACGAAGTGTAATCTTT+AGG | 0.279881 | 8.4:-23166833 | None:intergenic |
| AGCATATGAGCATGGGAAAA+AGG | 0.309220 | 8.4:+23163856 | MS.gene62881:CDS |
| CTTTACAAATGGACTAATTA+CGG | 0.310331 | 8.4:+23158979 | MS.gene62881:CDS |
| ACAATGATGTATGATGATTA+TGG | 0.323008 | 8.4:+23163638 | MS.gene62881:CDS |
| GGATCAGAAGCCACGGTTGC+CGG | 0.323208 | 8.4:+23158952 | MS.gene62881:CDS |
| TTGTGATCATCATGGGAATA+TGG | 0.330778 | 8.4:+23165665 | MS.gene62881:CDS |
| TCCGGCGTCTCTATCCATTC+TGG | 0.334542 | 8.4:-23159142 | None:intergenic |
| AGGAGAAGGGCGTTAGTCTT+TGG | 0.335192 | 8.4:+23163708 | MS.gene62881:CDS |
| CTCCTACCTGGCGAGGATTT+CGG | 0.339067 | 8.4:-23165749 | None:intergenic |
| CATTTCTGAAGGGATGATAT+TGG | 0.340358 | 8.4:-23163797 | None:intergenic |
| TCCCCTAACAAGGGATTAAA+GGG | 0.357578 | 8.4:-23164589 | None:intergenic |
| CTGGTTTGTTTGATACCATT+AGG | 0.365540 | 8.4:+23161005 | MS.gene62881:CDS |
| ATCGACGACGTACGCTTAAT+CGG | 0.368584 | 8.4:+23159096 | MS.gene62881:CDS |
| TTTGGAGTACTCCTATCTTC+TGG | 0.377023 | 8.4:+23163829 | MS.gene62881:CDS |
| GATAGATGATGACAGTTTAG+TGG | 0.378128 | 8.4:-23160824 | None:intergenic |
| TGATACCATTAGGCAATTAG+AGG | 0.378401 | 8.4:+23161015 | MS.gene62881:CDS |
| TTCAGGGAAACAGTCTCCTT+CGG | 0.379577 | 8.4:+23164503 | MS.gene62881:intron |
| AATATAATTTGCCAAGGATA+AGG | 0.381936 | 8.4:-23165644 | None:intergenic |
| ATTGGCTCATTAAAGTATAC+TGG | 0.382729 | 8.4:-23163779 | None:intergenic |
| TTCGAGGGCGAGGAGTTTAC+CGG | 0.392882 | 8.4:+23158897 | MS.gene62881:CDS |
| TCAGGGAAACAGTCTCCTTC+GGG | 0.396439 | 8.4:+23164504 | MS.gene62881:intron |
| TCCTTCAGTTGTTCATCTAA+AGG | 0.398048 | 8.4:+23159212 | MS.gene62881:CDS |
| TTCATTTGAGAACTGATTCA+AGG | 0.398225 | 8.4:+23160750 | MS.gene62881:CDS |
| ACTTGAGCCTGCAGGAATAC+TGG | 0.404656 | 8.4:-23165704 | None:intergenic |
| ATTCTCCGGTGAACGGATCT+TGG | 0.409105 | 8.4:-23159055 | None:intergenic |
| ATGGAACATTGTTGTGGAAA+AGG | 0.414030 | 8.4:+23166855 | MS.gene62881:CDS |
| TTGCCGGAGTTCTTTACAAA+TGG | 0.416794 | 8.4:+23158968 | MS.gene62881:CDS |
| AAAGATTACACTTCGTCAAA+TGG | 0.418594 | 8.4:+23166836 | MS.gene62881:CDS |
| CCTCATTATACCTTTAGTCC+TGG | 0.419213 | 8.4:-23166947 | None:intergenic |
| CTCTTTGAACTTGAGCCTGC+AGG | 0.419501 | 8.4:-23165712 | None:intergenic |
| AGTTGATACAGATATATGAT+AGG | 0.421055 | 8.4:-23160855 | None:intergenic |
| TTCTCCTTCTCAACAGGATC+CGG | 0.423276 | 8.4:-23163692 | None:intergenic |
| AAATTGTACCGAGTCAGATT+TGG | 0.423649 | 8.4:-23166890 | None:intergenic |
| CGCGAATCGTCTCGCCAGAA+TGG | 0.431637 | 8.4:+23159128 | MS.gene62881:CDS |
| CCAATGAGATGCAGCACAAC+GGG | 0.432925 | 8.4:-23158825 | None:intergenic |
| TCTAGGGTCAGAACTCCAAC+TGG | 0.434657 | 8.4:-23165474 | None:intergenic |
| CTTTCTTCTAATTAGGTGAC+TGG | 0.437943 | 8.4:+23166716 | MS.gene62881:intron |
| CTCATTATACCTTTAGTCCT+GGG | 0.439634 | 8.4:-23166946 | None:intergenic |
| TGTTAGTCAAGGCATTGATA+TGG | 0.441535 | 8.4:+23163598 | MS.gene62881:CDS |
| ACGCCCTTCTCCTTCTCAAC+AGG | 0.442450 | 8.4:-23163698 | None:intergenic |
| AATTACCTCTAATTGCCTAA+TGG | 0.446236 | 8.4:-23161020 | None:intergenic |
| CAATGATGTATGATGATTAT+GGG | 0.458008 | 8.4:+23163639 | MS.gene62881:CDS |
| TTTCACCATCATCAAACTCT+AGG | 0.460599 | 8.4:-23165491 | None:intergenic |
| AAGCAGATCCCTCGGGTTCA+AGG | 0.463930 | 8.4:-23162390 | None:intergenic |
| TCCTCTACCTTCACAATGGC+AGG | 0.464356 | 8.4:-23165388 | None:intergenic |
| ATATGCTCTATCCAGAAGAT+AGG | 0.472527 | 8.4:-23163840 | None:intergenic |
| CATTGATATGGAAAATAGTC+AGG | 0.474331 | 8.4:+23163610 | MS.gene62881:CDS |
| TGTAGCGTGGATACAAGCTT+TGG | 0.474954 | 8.4:+23160781 | MS.gene62881:CDS |
| AAGAAGCGAACTCCTTTGTC+AGG | 0.476918 | 8.4:-23164631 | None:intergenic |
| AGCCCTTTAATCCCTTGTTA+GGG | 0.477745 | 8.4:+23164587 | MS.gene62881:CDS |
| ACAATATATAACCTTATCCT+TGG | 0.478634 | 8.4:+23165633 | MS.gene62881:CDS |
| AAAGTACGCCATTGCGGAGG+AGG | 0.479447 | 8.4:-23159026 | None:intergenic |
| CATTGTTGTGGAAAAGGACT+AGG | 0.483064 | 8.4:+23166861 | MS.gene62881:CDS |
| ATTCTTTGTCAAGAACGATC+TGG | 0.485342 | 8.4:+23160986 | MS.gene62881:CDS |
| AAATTATATTGTGATCATCA+TGG | 0.485557 | 8.4:+23165657 | MS.gene62881:CDS |
| CCCGTTGTGCTGCATCTCAT+TGG | 0.486703 | 8.4:+23158825 | MS.gene62881:CDS |
| GTCGTGCAAAGCAGATCCCT+CGG | 0.495137 | 8.4:-23162398 | None:intergenic |
| TGCATCTCATTGGAGAGTCC+AGG | 0.495599 | 8.4:+23158835 | MS.gene62881:CDS |
| GAGAACAGATTGAGATTCTC+CGG | 0.501584 | 8.4:-23159069 | None:intergenic |
| GGTGAATTACTTCCGATCCC+TGG | 0.503690 | 8.4:-23158853 | None:intergenic |
| GAATACCAATTAACAAAGAA+TGG | 0.504184 | 8.4:+23162424 | MS.gene62881:CDS |
| CATACACGGCTGCACTTTCG+AGG | 0.505626 | 8.4:+23158881 | MS.gene62881:CDS |
| CATTCTGGCGAGACGATTCG+CGG | 0.507691 | 8.4:-23159127 | None:intergenic |
| GGATTTGTTGAAGATACAAT+GGG | 0.510337 | 8.4:+23166737 | MS.gene62881:CDS |
| TGAGCTTACCCCAGGACTAA+AGG | 0.510721 | 8.4:+23166937 | MS.gene62881:CDS |
| AACTCCTTTGTCAGGAAAGT+CGG | 0.512877 | 8.4:-23164623 | None:intergenic |
| TTCGTAAGTTTCCCCTAACA+AGG | 0.521697 | 8.4:-23164599 | None:intergenic |
| ATTGCGGAGGAGGAACCATC+GGG | 0.525539 | 8.4:-23159016 | None:intergenic |
| GAAGGAGAAGAAGATGAAGA+AGG | 0.525636 | 8.4:-23159195 | None:intergenic |
| TTGTACCGAGTCAGATTTGG+TGG | 0.526468 | 8.4:-23166887 | None:intergenic |
| AATCCTCAAAACATTTCTGA+AGG | 0.528626 | 8.4:-23163808 | None:intergenic |
| TAAGAAACGTTTGCTTGAAG+AGG | 0.539228 | 8.4:+23160886 | MS.gene62881:CDS |
| CATTGCGGAGGAGGAACCAT+CGG | 0.540290 | 8.4:-23159017 | None:intergenic |
| AATTATATTGTGATCATCAT+GGG | 0.542313 | 8.4:+23165658 | MS.gene62881:CDS |
| TTATTCCAAGATCCGTTCAC+CGG | 0.545707 | 8.4:+23159050 | MS.gene62881:CDS |
| TTAGGGCGTGGAAAATATAG+TGG | 0.546554 | 8.4:+23162457 | MS.gene62881:CDS |
| CGGCTGCACTTTCGAGGGCG+AGG | 0.549758 | 8.4:+23158887 | MS.gene62881:CDS |
| ACCTTTAGATGAACAACTGA+AGG | 0.550447 | 8.4:-23159213 | None:intergenic |
| CGTCAAATGGAACATTGTTG+TGG | 0.552399 | 8.4:+23166849 | MS.gene62881:CDS |
| AGTCCATTTGTAAAGAACTC+CGG | 0.552798 | 8.4:-23158971 | None:intergenic |
| GGACTAATTACGGCAAAGGA+TGG | 0.555562 | 8.4:+23158989 | MS.gene62881:CDS |
| AAGAAACGTTTGCTTGAAGA+GGG | 0.556527 | 8.4:+23160887 | MS.gene62881:CDS |
| TCTTGACCGAAATCCTCGCC+AGG | 0.557364 | 8.4:+23165743 | MS.gene62881:CDS |
| GTTGATACAGATATATGATA+GGG | 0.559476 | 8.4:-23160854 | None:intergenic |
| CTGGATAGAGCATATGAGCA+TGG | 0.561758 | 8.4:+23163848 | MS.gene62881:CDS |
| CAGCCACATTATTTGGCAAG+TGG | 0.563225 | 8.4:+23166768 | MS.gene62881:CDS |
| TACCGAGTCAGATTTGGTGG+TGG | 0.569125 | 8.4:-23166884 | None:intergenic |
| TCGTGCAAAGCAGATCCCTC+GGG | 0.569487 | 8.4:-23162397 | None:intergenic |
| GACTGCATTGTTCGCCGTGG+AGG | 0.570257 | 8.4:+23158931 | MS.gene62881:CDS |
| TTCACCATCATCAAACTCTA+GGG | 0.571647 | 8.4:-23165490 | None:intergenic |
| CGATGGTTCCTCCTCCGCAA+TGG | 0.572855 | 8.4:+23159018 | MS.gene62881:CDS |
| AGCCACATTATTTGGCAAGT+GGG | 0.575209 | 8.4:+23166769 | MS.gene62881:CDS |
| CAATGGCAGGCAACCACAGT+TGG | 0.575286 | 8.4:-23165375 | None:intergenic |
| TCAATTCAACTTGACCCAGT+TGG | 0.576089 | 8.4:+23165459 | MS.gene62881:CDS |
| GCCCTTTAATCCCTTGTTAG+GGG | 0.581179 | 8.4:+23164588 | MS.gene62881:CDS |
| GCATCTCATTGGAGAGTCCA+GGG | 0.581823 | 8.4:+23158836 | MS.gene62881:CDS |
| TGGATTTGTTGAAGATACAA+TGG | 0.582114 | 8.4:+23166736 | MS.gene62881:CDS |
| ACACTGAATGAGCTTACCCC+AGG | 0.584389 | 8.4:+23166929 | MS.gene62881:CDS |
| TGGATAGAGCATATGAGCAT+GGG | 0.584720 | 8.4:+23163849 | MS.gene62881:CDS |
| GCCAGAATGGATAGAGACGC+CGG | 0.586219 | 8.4:+23159141 | MS.gene62881:CDS |
| GCCATTGTGAAGGTAGAGGA+TGG | 0.586276 | 8.4:+23165391 | MS.gene62881:CDS |
| CTGACCCTAGAGTTTGATGA+TGG | 0.588643 | 8.4:+23165486 | MS.gene62881:CDS |
| GTAATCGCCAGTATTCCTGC+AGG | 0.591049 | 8.4:+23165697 | MS.gene62881:CDS |
| GTCAATGATCAAAGACAATG+TGG | 0.591275 | 8.4:+23163730 | MS.gene62881:CDS |
| GGCAGGCAACCACAGTTGGA+TGG | 0.595585 | 8.4:-23165371 | None:intergenic |
| AAATGGACTAATTACGGCAA+AGG | 0.595813 | 8.4:+23158985 | MS.gene62881:CDS |
| AAGGTTTATGACTCTTCTGA+CGG | 0.598402 | 8.4:-23159176 | None:intergenic |
| GCCTGCCATTGTGAAGGTAG+AGG | 0.598638 | 8.4:+23165387 | MS.gene62881:CDS |
| GCTTCCGGATCCTGTTGAGA+AGG | 0.604677 | 8.4:+23163688 | MS.gene62881:CDS |
| TCATTGGAGAGTCCAGGGAT+CGG | 0.605015 | 8.4:+23158841 | MS.gene62881:CDS |
| AGTGCAGCCGTGTATGACTC+CGG | 0.606485 | 8.4:-23158874 | None:intergenic |
| GGTAAGCTCATTCAGTGTGA+TGG | 0.607115 | 8.4:-23166924 | None:intergenic |
| GATTGAGATTCTCCGGTGAA+CGG | 0.609231 | 8.4:-23159062 | None:intergenic |
| GGTATCCTCAAATAGTAAGA+CGG | 0.610160 | 8.4:+23163660 | MS.gene62881:CDS |
| GATCACAATATAATTTGCCA+AGG | 0.612712 | 8.4:-23165650 | None:intergenic |
| TGAAATATTTCAGTGGAGCA+AGG | 0.613705 | 8.4:+23165509 | MS.gene62881:CDS |
| ATCCTCAAAACATTTCTGAA+GGG | 0.613815 | 8.4:-23163807 | None:intergenic |
| GCGAGGAGTTTACCGGCGAG+TGG | 0.614782 | 8.4:+23158904 | MS.gene62881:CDS |
| GGATCCTGTTGAGAAGGAGA+AGG | 0.614967 | 8.4:+23163694 | MS.gene62881:CDS |
| AGGGATCGGAAGTAATTCAC+CGG | 0.615080 | 8.4:+23158855 | MS.gene62881:CDS |
| AAGCTTGTATCCACGCTACA+CGG | 0.615200 | 8.4:-23160778 | None:intergenic |
| GCTCATTAAAGTATACTGGA+AGG | 0.617576 | 8.4:-23163775 | None:intergenic |
| TCTGGATATGCATCATCAGA+AGG | 0.618172 | 8.4:+23164553 | MS.gene62881:CDS |
| TCATTATACCTTTAGTCCTG+GGG | 0.620951 | 8.4:-23166945 | None:intergenic |
| GTAAAGAACTCCGGCAACCG+TGG | 0.621812 | 8.4:-23158962 | None:intergenic |
| GATCCTGTTGAGAAGGAGAA+GGG | 0.622608 | 8.4:+23163695 | MS.gene62881:CDS |
| GGCAGCTAACCTTGAACCCG+AGG | 0.623759 | 8.4:+23162381 | MS.gene62881:intron |
| GGCCACCACCAAATCTGACT+CGG | 0.623879 | 8.4:+23166882 | MS.gene62881:CDS |
| TCCAATGAGATGCAGCACAA+CGG | 0.624692 | 8.4:-23158826 | None:intergenic |
| CAAGGAAAGACCGTGTAGCG+TGG | 0.631619 | 8.4:+23160768 | MS.gene62881:CDS |
| CCGTGGAGGATCAGAAGCCA+CGG | 0.633089 | 8.4:+23158945 | MS.gene62881:CDS |
| TAGCAGTGAAAATCTTGTGA+AGG | 0.636958 | 8.4:+23160910 | MS.gene62881:CDS |
| TCTGCGGAAGCTGTTAGTCA+AGG | 0.641099 | 8.4:+23163587 | MS.gene62881:CDS |
| TCGTAAGTTTCCCCTAACAA+GGG | 0.642972 | 8.4:-23164598 | None:intergenic |
| AGGAATACTGGCGATTACCA+CGG | 0.645278 | 8.4:-23165692 | None:intergenic |
| ATGCAGTCAGATCCACTCGC+CGG | 0.646020 | 8.4:-23158916 | None:intergenic |
| GTGGTTGCCTGCCATTGTGA+AGG | 0.649232 | 8.4:+23165381 | MS.gene62881:CDS |
| TAATTCACCGGAGTCATACA+CGG | 0.650053 | 8.4:+23158867 | MS.gene62881:CDS |
| ATGATGGTGAAATATTTCAG+TGG | 0.650358 | 8.4:+23165502 | MS.gene62881:CDS |
| CATGGGAATATGGAAATCCG+TGG | 0.651698 | 8.4:+23165675 | MS.gene62881:CDS |
| GTAGAACCTCCTACCTGGCG+AGG | 0.655780 | 8.4:-23165756 | None:intergenic |
| CTAGGGTCAGAACTCCAACT+GGG | 0.658230 | 8.4:-23165473 | None:intergenic |
| AATAAGAAAGTACGCCATTG+CGG | 0.660257 | 8.4:-23159032 | None:intergenic |
| TGCATATCCAGAAACAGCAA+AGG | 0.663498 | 8.4:-23164542 | None:intergenic |
| GCAAAGGATGGAGATCCCGA+TGG | 0.666798 | 8.4:+23159001 | MS.gene62881:CDS |
| CAGCAACGTTCAATGCCCGA+AGG | 0.671551 | 8.4:-23164519 | None:intergenic |
| AAGAAAGTACGCCATTGCGG+AGG | 0.672163 | 8.4:-23159029 | None:intergenic |
| ATCCCACTTGCCAAATAATG+TGG | 0.674658 | 8.4:-23166771 | None:intergenic |
| ATACACGGCTGCACTTTCGA+GGG | 0.677693 | 8.4:+23158882 | MS.gene62881:CDS |
| CCGTGGCTTCTGATCCTCCA+CGG | 0.679159 | 8.4:-23158945 | None:intergenic |
| ATATATCTGTATCAACTGAG+AGG | 0.679661 | 8.4:+23160861 | MS.gene62881:CDS |
| ATTGTGAAGGTAGAGGATGG+AGG | 0.682063 | 8.4:+23165394 | MS.gene62881:CDS |
| TCTGACTGCATTGTTCGCCG+TGG | 0.685403 | 8.4:+23158928 | MS.gene62881:CDS |
| GCAGCTAACCTTGAACCCGA+GGG | 0.688367 | 8.4:+23162382 | MS.gene62881:CDS |
| TCCATCCTCTACCTTCACAA+TGG | 0.688384 | 8.4:-23165392 | None:intergenic |
| GCTATCAGAATGCAGTACAA+CGG | 0.696464 | 8.4:+23163424 | MS.gene62881:intron |
| TCAATGATCAAAGACAATGT+GGG | 0.707465 | 8.4:+23163731 | MS.gene62881:CDS |
| GAAGCCGACTTTCCTGACAA+AGG | 0.708212 | 8.4:+23164619 | MS.gene62881:CDS |
| GGTTAGTCACCATCCAACTG+TGG | 0.711984 | 8.4:+23165362 | MS.gene62881:intron |
| AAATCGAGTGAACATGTCTG+CGG | 0.724062 | 8.4:+23163571 | MS.gene62881:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23158805 | 23166958 | 23158805 | ID=MS.gene62881 |
| chr8.4 | mRNA | 23158805 | 23166958 | 23158805 | ID=MS.gene62881.t1;Parent=MS.gene62881 |
| chr8.4 | exon | 23158805 | 23159233 | 23158805 | ID=MS.gene62881.t1.exon1;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23158805 | 23159233 | 23158805 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23160683 | 23161036 | 23160683 | ID=MS.gene62881.t1.exon2;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23160683 | 23161036 | 23160683 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23162382 | 23162478 | 23162382 | ID=MS.gene62881.t1.exon3;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23162382 | 23162478 | 23162382 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23163432 | 23163877 | 23163432 | ID=MS.gene62881.t1.exon4;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23163432 | 23163877 | 23163432 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23164508 | 23164663 | 23164508 | ID=MS.gene62881.t1.exon5;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23164508 | 23164663 | 23164508 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23165363 | 23165530 | 23165363 | ID=MS.gene62881.t1.exon6;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23165363 | 23165530 | 23165363 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23165624 | 23165764 | 23165624 | ID=MS.gene62881.t1.exon7;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23165624 | 23165764 | 23165624 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| chr8.4 | exon | 23166731 | 23166958 | 23166731 | ID=MS.gene62881.t1.exon8;Parent=MS.gene62881.t1 |
| chr8.4 | CDS | 23166731 | 23166958 | 23166731 | ID=cds.MS.gene62881.t1;Parent=MS.gene62881.t1 |
| Gene Sequence |
| Protein sequence |
