Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63846.t1 | P22769 | 41.8 | 98 | 40 | 3 | 1 | 83 | 1 | 96 | 3.3e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene63846 | 0.81764 | 2.97E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene63846 | 0.818904 | 1.54E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene63846 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene63846 | 0.809133 | 2.20E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene63846 | 0.802914 | 4.47E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene63846 | 0.825802 | 3.84E-54 | -1.69E-46 |
| MS.gene05188 | MS.gene63846 | 0.801046 | 1.08E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene63846 | 0.826832 | 2.18E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene63846 | 0.809336 | 1.99E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene63846 | 0.838482 | 2.80E-57 | -1.69E-46 |
| MS.gene053952 | MS.gene63846 | 0.813931 | 1.99E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene63846 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene63846 | 0.807397 | 5.16E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene63846 | 0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene056091 | MS.gene63846 | 0.815015 | 1.15E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene63846 | 0.803933 | 2.75E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene63846 | 0.826661 | 2.40E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene63846 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene63846 | 0.83891 | 2.17E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene63846 | 0.809684 | 1.68E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene63846 | 0.800357 | 1.50E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene63846 | 0.817038 | 4.06E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene63846 | 0.841634 | 4.22E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene63846 | 0.808826 | 2.56E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene63846 | 0.824017 | 1.01E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene63846 | 0.803886 | 2.81E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene63846 | 0.802919 | 4.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGATTGGATTGGATT+TGG | 0.248670 | 5.1:+75392692 | None:intergenic |
| CTGTGTCCATTTGATTGGAT+TGG | 0.323026 | 5.1:+75392686 | None:intergenic |
| GTCTTTGCGTGTACTTCTGC+TGG | 0.354607 | 5.1:-75393709 | MS.gene63846:CDS |
| ATGTTAAACCTCTTGGAGTT+TGG | 0.364463 | 5.1:+75394339 | None:intergenic |
| TGCATCTGTGTCCATTTGAT+TGG | 0.368158 | 5.1:+75392681 | None:intergenic |
| TCACCTCCTCAGGTTGTTGA+AGG | 0.379575 | 5.1:-75393796 | MS.gene63846:CDS |
| GGGTACCGTGGTCGGGAGAT+CGG | 0.387870 | 5.1:+75392603 | None:intergenic |
| GAAGAATAACAATGAATTCC+AGG | 0.393812 | 5.1:-75394468 | None:intergenic |
| GGTACCGTGGTCGGGAGATC+GGG | 0.395366 | 5.1:+75392604 | None:intergenic |
| GGGACTGTTTCGTCGGTTGA+TGG | 0.406063 | 5.1:+75392624 | None:intergenic |
| GATGGCTGAGGATTTCTTCT+CGG | 0.420311 | 5.1:+75394363 | None:intergenic |
| CTCGGTGTTTCCTTTGCGAA+CGG | 0.425399 | 5.1:+75394381 | None:intergenic |
| ATTCGAGCTAGGTGAAGTTC+TGG | 0.432644 | 5.1:-75392453 | MS.gene63846:intron |
| GAATGTTGTGACCGCTTTGT+CGG | 0.451859 | 5.1:+75394444 | None:intergenic |
| CCTCCTCAGGTTGTTGAAGG+TGG | 0.453362 | 5.1:-75393793 | MS.gene63846:CDS |
| CCAAATCCAATCCAATCAAA+TGG | 0.456706 | 5.1:-75392692 | MS.gene63846:CDS |
| TTGGAGTTTGGCGATGGCTG+AGG | 0.463259 | 5.1:+75394351 | None:intergenic |
| CAGCAAGTCTTCACCTCCTC+AGG | 0.468566 | 5.1:-75393806 | MS.gene63846:CDS |
| AGATTGCGGCGGCGAGGAAG+AGG | 0.477190 | 5.1:-75392410 | MS.gene63846:CDS |
| GGTGAAGACTTGCTGTATAA+CGG | 0.482952 | 5.1:+75393814 | None:intergenic |
| TAGCCTCGGGTACCGTGGTC+GGG | 0.494787 | 5.1:+75392596 | None:intergenic |
| TGTGACCGCTTTGTCGGACC+TGG | 0.502607 | 5.1:+75394450 | None:intergenic |
| ACTGTTTCGTCGGTTGATGG+TGG | 0.513928 | 5.1:+75392627 | None:intergenic |
| TTAGCCTCGGGTACCGTGGT+CGG | 0.515300 | 5.1:+75392595 | None:intergenic |
| CTGTTTCGTCGGTTGATGGT+GGG | 0.526601 | 5.1:+75392628 | None:intergenic |
| AGGTGAAGTTCTGGATCGGA+TGG | 0.535458 | 5.1:-75392444 | MS.gene63846:CDS |
| GATTCGCTTGATGTTAGCCT+CGG | 0.539918 | 5.1:+75392582 | None:intergenic |
| AACCTCTTGGAGTTTGGCGA+TGG | 0.544507 | 5.1:+75394345 | None:intergenic |
| GTTCTGGATCGGATGGGTAG+AGG | 0.553221 | 5.1:-75392437 | MS.gene63846:CDS |
| CTCTACTGAGAGATGACCAT+CGG | 0.555695 | 5.1:+75394417 | None:intergenic |
| CCTCAGGTTGTTGAAGGTGG+AGG | 0.556158 | 5.1:-75393790 | MS.gene63846:CDS |
| TCTACTGAGAGATGACCATC+GGG | 0.559189 | 5.1:+75394418 | None:intergenic |
| TTGCGGCGGCGAGGAAGAGG+AGG | 0.570379 | 5.1:-75392407 | MS.gene63846:CDS |
| GGTGGGAAGATTAGAGCTCG+TGG | 0.584595 | 5.1:+75392645 | None:intergenic |
| AGCTAGGTGAAGTTCTGGAT+CGG | 0.589771 | 5.1:-75392448 | MS.gene63846:intron |
| GTCACAACATTCTCTCCCGA+TGG | 0.601720 | 5.1:-75394433 | MS.gene63846:CDS |
| GGAGATCGGGACTGTTTCGT+CGG | 0.602760 | 5.1:+75392617 | None:intergenic |
| ATTCGCTTGATGTTAGCCTC+GGG | 0.604513 | 5.1:+75392583 | None:intergenic |
| GGAAGAAGATTGCGGCGGCG+AGG | 0.607410 | 5.1:-75392416 | MS.gene63846:CDS |
| CCTCCACCTTCAACAACCTG+AGG | 0.607497 | 5.1:+75393790 | None:intergenic |
| CCACCTTCAACAACCTGAGG+AGG | 0.616367 | 5.1:+75393793 | None:intergenic |
| GCTCTCGAAGCCGTTCGCAA+AGG | 0.629193 | 5.1:-75394391 | MS.gene63846:CDS |
| GTGGGAAGATTAGAGCTCGT+GGG | 0.639644 | 5.1:+75392646 | None:intergenic |
| GGCGAGGAAGAGGAGGACGA+CGG | 0.643135 | 5.1:-75392400 | MS.gene63846:CDS |
| TCTCCCGACCACGGTACCCG+AGG | 0.643808 | 5.1:-75392599 | MS.gene63846:CDS |
| GATGTTAGCCTCGGGTACCG+TGG | 0.644685 | 5.1:+75392591 | None:intergenic |
| GGTGAAGTTCTGGATCGGAT+GGG | 0.646283 | 5.1:-75392443 | MS.gene63846:CDS |
| AGATGTGATGTACAGAGTGG+TGG | 0.646908 | 5.1:+75393736 | None:intergenic |
| AGCCATCGCCAAACTCCAAG+AGG | 0.656764 | 5.1:-75394347 | MS.gene63846:intron |
| GAAGATTAGAGCTCGTGGGT+CGG | 0.664456 | 5.1:+75392650 | None:intergenic |
| GAATTCCAGGTCCGACAAAG+CGG | 0.692401 | 5.1:-75394455 | MS.gene63846:CDS |
| CAGTCCCGATCTCCCGACCA+CGG | 0.703710 | 5.1:-75392608 | MS.gene63846:CDS |
| TGGGTAGAGGAAGAAGATTG+CGG | 0.745575 | 5.1:-75392424 | MS.gene63846:CDS |
| GTAGAGGAAGAAGATTGCGG+CGG | 0.750888 | 5.1:-75392421 | MS.gene63846:CDS |
| AAAAGATGTGATGTACAGAG+TGG | 0.793417 | 5.1:+75393733 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCATTAAAATAAAAAAG+GGG | - | chr5.1:75394070-75394089 | MS.gene63846:intron | 10.0% |
| !! | TAGTATATTATAATATAACA+TGG | - | chr5.1:75392975-75392994 | MS.gene63846:intron | 10.0% |
| !! | ATATTATAATATAACATGGA+TGG | - | chr5.1:75392979-75392998 | MS.gene63846:intron | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | + | chr5.1:75393875-75393894 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | + | chr5.1:75393876-75393895 | None:intergenic | 15.0% |
| !! | AAGAATATTAACGTAAGTAA+AGG | + | chr5.1:75392653-75392672 | None:intergenic | 20.0% |
| !! | AATAGAAACTTATCAACAAA+TGG | - | chr5.1:75392892-75392911 | MS.gene63846:intron | 20.0% |
| !! | AATCGTTGTAAAAAAAACTA+AGG | - | chr5.1:75393277-75393296 | MS.gene63846:intron | 20.0% |
| !! | AATTATATCATTTGAAGAGA+TGG | - | chr5.1:75393553-75393572 | MS.gene63846:intron | 20.0% |
| !! | AGAATATTAACGTAAGTAAA+GGG | + | chr5.1:75392652-75392671 | None:intergenic | 20.0% |
| !! | ATAGAAGAAGAATAAGTTAT+TGG | + | chr5.1:75393456-75393475 | None:intergenic | 20.0% |
| !!! | AAAGATTATTTTGACAGTAA+TGG | - | chr5.1:75393650-75393669 | MS.gene63846:intron | 20.0% |
| !!! | AATCGTACATAAATTTTTGT+TGG | - | chr5.1:75393771-75393790 | MS.gene63846:CDS | 20.0% |
| !!! | GTTAAGAAAAAAAGGTATTT+TGG | - | chr5.1:75393684-75393703 | MS.gene63846:intron | 20.0% |
| ! | AATATTAACGTAAGTAAAGG+GGG | + | chr5.1:75392650-75392669 | None:intergenic | 25.0% |
| ! | AGTGTGAAGTTAAGAAAAAA+AGG | - | chr5.1:75393676-75393695 | MS.gene63846:intron | 25.0% |
| ! | ATAGAGGAAGAATAAGTTAT+TGG | + | chr5.1:75393407-75393426 | None:intergenic | 25.0% |
| ! | ATTGGAATTTAATTGATCGA+GGG | + | chr5.1:75393389-75393408 | None:intergenic | 25.0% |
| ! | CTTACGTTAATATTCTTTGT+TGG | - | chr5.1:75392656-75392675 | MS.gene63846:CDS | 25.0% |
| ! | GAATATTAACGTAAGTAAAG+GGG | + | chr5.1:75392651-75392670 | None:intergenic | 25.0% |
| ! | TATTGGAATTTAATTGATCG+AGG | + | chr5.1:75393390-75393409 | None:intergenic | 25.0% |
| !! | CACACTTTTAATAAAGTGAT+TGG | + | chr5.1:75392918-75392937 | None:intergenic | 25.0% |
| !! | GCATCTCAAAACTTTTATAA+TGG | + | chr5.1:75392815-75392834 | None:intergenic | 25.0% |
| !!! | AAAAGATCTTTTTTGTCCAA+AGG | - | chr5.1:75393505-75393524 | MS.gene63846:intron | 25.0% |
| !!! | CTCAAAACTTTTATAATGGA+AGG | + | chr5.1:75392811-75392830 | None:intergenic | 25.0% |
| !!! | GTTACAAACTTTGAGTTTTA+GGG | - | chr5.1:75394318-75394337 | MS.gene63846:intron | 25.0% |
| !!! | TGTTACAAACTTTGAGTTTT+AGG | - | chr5.1:75394317-75394336 | MS.gene63846:intron | 25.0% |
| !!! | TGTTGGCTAAAATATACTTT+TGG | - | chr5.1:75393788-75393807 | MS.gene63846:CDS | 25.0% |
| !!! | TGTTTTTTAAAATAGTCCCT+GGG | - | chr5.1:75393887-75393906 | MS.gene63846:intron | 25.0% |
| !!! | TTATTTTTTCGTGTTGAGTT+CGG | - | chr5.1:75392855-75392874 | MS.gene63846:intron | 25.0% |
| !!! | TTGTTTTTTAAAATAGTCCC+TGG | - | chr5.1:75393886-75393905 | MS.gene63846:intron | 25.0% |
| !!! | TTTTTTTGTCCTTGTTTGTT+GGG | + | chr5.1:75393624-75393643 | None:intergenic | 25.0% |
| ACAAACAAGGACAAAAAAAC+TGG | - | chr5.1:75393625-75393644 | MS.gene63846:intron | 30.0% | |
| AGTAAGTTGTGAATCTGTTA+TGG | + | chr5.1:75393587-75393606 | None:intergenic | 30.0% | |
| AGTGTGCATAGTTATCAAAT+TGG | - | chr5.1:75392932-75392951 | MS.gene63846:intron | 30.0% | |
| ATATTAACGTAAGTAAAGGG+GGG | + | chr5.1:75392649-75392668 | None:intergenic | 30.0% | |
| ATCACTCAACAAACAAATAG+AGG | + | chr5.1:75393423-75393442 | None:intergenic | 30.0% | |
| CAAACAAGGACAAAAAAACT+GGG | - | chr5.1:75393626-75393645 | MS.gene63846:intron | 30.0% | |
| CTGATTGCACGAAAATAAAA+TGG | + | chr5.1:75392544-75392563 | None:intergenic | 30.0% | |
| TAAAAAAAACTAAGGAACGC+CGG | - | chr5.1:75393285-75393304 | MS.gene63846:intron | 30.0% | |
| ! | AATGAAAACCTCTAAAAGAG+AGG | - | chr5.1:75392723-75392742 | MS.gene63846:intron | 30.0% |
| ! | GATTTGCTTTGATTGAGATA+TGG | - | chr5.1:75394368-75394387 | MS.gene63846:CDS | 30.0% |
| !! | ACGATTTTGATAGAAACATC+CGG | + | chr5.1:75393307-75393326 | None:intergenic | 30.0% |
| !!! | GTTTTTTTGTCCTTGTTTGT+TGG | + | chr5.1:75393625-75393644 | None:intergenic | 30.0% |
| !!! | TATTTTTTCGTGTTGAGTTC+GGG | - | chr5.1:75392856-75392875 | MS.gene63846:intron | 30.0% |
| !!! | TTTTTTGTCCTTGTTTGTTG+GGG | + | chr5.1:75393623-75393642 | None:intergenic | 30.0% |
| AAAAGATGTGATGTACAGAG+TGG | + | chr5.1:75393123-75393142 | None:intergenic | 35.0% | |
| AGATCTTGAATCTTCAACAG+TGG | - | chr5.1:75393183-75393202 | MS.gene63846:intron | 35.0% | |
| ATCCCGACGATTATATTAAC+AGG | + | chr5.1:75393254-75393273 | None:intergenic | 35.0% | |
| ATGTTAAACCTCTTGGAGTT+TGG | + | chr5.1:75392517-75392536 | None:intergenic | 35.0% | |
| CCAAATCCAATCCAATCAAA+TGG | - | chr5.1:75394161-75394180 | MS.gene63846:intron | 35.0% | |
| CTGTATATAAACTGTACACG+TGG | - | chr5.1:75393960-75393979 | MS.gene63846:intron | 35.0% | |
| GATCTTGAATCTTCAACAGT+GGG | - | chr5.1:75393184-75393203 | MS.gene63846:intron | 35.0% | |
| TATTAACGTAAGTAAAGGGG+GGG | + | chr5.1:75392648-75392667 | None:intergenic | 35.0% | |
| TCCCGACGATTATATTAACA+GGG | + | chr5.1:75393253-75393272 | None:intergenic | 35.0% | |
| TGCCAAATAAGCAAGAAAGT+GGG | + | chr5.1:75393913-75393932 | None:intergenic | 35.0% | |
| TGGAGAAATGTTAAACCTCT+TGG | + | chr5.1:75392524-75392543 | None:intergenic | 35.0% | |
| TGTCCAAAGGTAAAAGATGA+TGG | - | chr5.1:75393518-75393537 | MS.gene63846:intron | 35.0% | |
| ! | CCATTTGATTGGATTGGATT+TGG | + | chr5.1:75394164-75394183 | None:intergenic | 35.0% |
| ! | GATCCATCATCTTTTACCTT+TGG | + | chr5.1:75393524-75393543 | None:intergenic | 35.0% |
| ! | TATTTGGCAGGTTTTTGCTT+AGG | - | chr5.1:75393924-75393943 | MS.gene63846:intron | 35.0% |
| ! | TTTCACATCCTCTCTTTTAG+AGG | + | chr5.1:75392734-75392753 | None:intergenic | 35.0% |
| !! | AATATGGCTCATTTGGGTTT+TGG | - | chr5.1:75393819-75393838 | MS.gene63846:CDS | 35.0% |
| !! | TTATATTAACAGGGCGTTGA+AGG | + | chr5.1:75393244-75393263 | None:intergenic | 35.0% |
| !!! | AACTTTGAGTTTTAGGGAGA+AGG | - | chr5.1:75394324-75394343 | MS.gene63846:intron | 35.0% |
| !!! | GGTATTTTGGTGATGAAAAG+AGG | - | chr5.1:75393697-75393716 | MS.gene63846:intron | 35.0% |
| !!! | TGGATGGTTTTGTTCTGTTT+TGG | - | chr5.1:75392995-75393014 | MS.gene63846:intron | 35.0% |
| CACTTTCTTGCTTATTTGGC+AGG | - | chr5.1:75393912-75393931 | MS.gene63846:intron | 40.0% | |
| CCAAATGAGCCATATTTGCA+GGG | + | chr5.1:75393815-75393834 | None:intergenic | 40.0% | |
| CCTGCAAATATGGCTCATTT+GGG | - | chr5.1:75393813-75393832 | MS.gene63846:CDS | 40.0% | |
| CGCCCTGTTAATATAATCGT+CGG | - | chr5.1:75393248-75393267 | MS.gene63846:intron | 40.0% | |
| CTGCCAAATAAGCAAGAAAG+TGG | + | chr5.1:75393914-75393933 | None:intergenic | 40.0% | |
| CTGTGTCCATTTGATTGGAT+TGG | + | chr5.1:75394170-75394189 | None:intergenic | 40.0% | |
| GCCCTGTTAATATAATCGTC+GGG | - | chr5.1:75393249-75393268 | MS.gene63846:intron | 40.0% | |
| TGCATCTGTGTCCATTTGAT+TGG | + | chr5.1:75394175-75394194 | None:intergenic | 40.0% | |
| ! | ACTTTTGGTCCCTGCAAATA+TGG | - | chr5.1:75393803-75393822 | MS.gene63846:CDS | 40.0% |
| !! | GGTGAAGACTTGCTGTATAA+CGG | + | chr5.1:75393042-75393061 | None:intergenic | 40.0% |
| !!! | GTTCTGTTTTGGCAGATCAT+GGG | - | chr5.1:75393006-75393025 | MS.gene63846:intron | 40.0% |
| !!! | TGAGTTTTAGGGAGAAGGAT+GGG | - | chr5.1:75394329-75394348 | MS.gene63846:intron | 40.0% |
| !!! | TGTTCTGTTTTGGCAGATCA+TGG | - | chr5.1:75393005-75393024 | MS.gene63846:intron | 40.0% |
| !!! | TTGAGTTTTAGGGAGAAGGA+TGG | - | chr5.1:75394328-75394347 | MS.gene63846:intron | 40.0% |
| AGATGTGATGTACAGAGTGG+TGG | + | chr5.1:75393120-75393139 | None:intergenic | 45.0% | |
| AGTGGGTCTTGGATCTTCAA+CGG | - | chr5.1:75393201-75393220 | MS.gene63846:intron | 45.0% | |
| ATATAAACCAGCGCGCTAAC+AGG | + | chr5.1:75392777-75392796 | None:intergenic | 45.0% | |
| ATTCGAGCTAGGTGAAGTTC+TGG | - | chr5.1:75394400-75394419 | MS.gene63846:CDS | 45.0% | |
| CCCAAATGAGCCATATTTGC+AGG | + | chr5.1:75393816-75393835 | None:intergenic | 45.0% | |
| CCCTGCAAATATGGCTCATT+TGG | - | chr5.1:75393812-75393831 | MS.gene63846:CDS | 45.0% | |
| CTCTACTGAGAGATGACCAT+CGG | + | chr5.1:75392439-75392458 | None:intergenic | 45.0% | |
| GAATCTTCAACAGTGGGTCT+TGG | - | chr5.1:75393190-75393209 | MS.gene63846:intron | 45.0% | |
| GAATGTTGTGACCGCTTTGT+CGG | + | chr5.1:75392412-75392431 | None:intergenic | 45.0% | |
| GAGGCAAAAACACTGAACAG+GGG | - | chr5.1:75393082-75393101 | MS.gene63846:intron | 45.0% | |
| GATGGCTGAGGATTTCTTCT+CGG | + | chr5.1:75392493-75392512 | None:intergenic | 45.0% | |
| GCGCTGCATATATGTTTGCT+GGG | + | chr5.1:75394111-75394130 | None:intergenic | 45.0% | |
| GGAGGCAAAAACACTGAACA+GGG | - | chr5.1:75393081-75393100 | MS.gene63846:intron | 45.0% | |
| GGCCCACTTTCTTGCTTATT+TGG | - | chr5.1:75393908-75393927 | MS.gene63846:intron | 45.0% | |
| TACGATCACCCCAACAAACA+AGG | - | chr5.1:75393612-75393631 | MS.gene63846:intron | 45.0% | |
| TCTACTGAGAGATGACCATC+GGG | + | chr5.1:75392438-75392457 | None:intergenic | 45.0% | |
| TGCGCTGCATATATGTTTGC+TGG | + | chr5.1:75394112-75394131 | None:intergenic | 45.0% | |
| TGGAGGCAAAAACACTGAAC+AGG | - | chr5.1:75393080-75393099 | MS.gene63846:intron | 45.0% | |
| TGGGTAGAGGAAGAAGATTG+CGG | - | chr5.1:75394429-75394448 | MS.gene63846:CDS | 45.0% | |
| ! | ATTCGCTTGATGTTAGCCTC+GGG | + | chr5.1:75394273-75394292 | None:intergenic | 45.0% |
| ! | GATGGGTCGAGAATTGGTTT+AGG | - | chr5.1:75394346-75394365 | MS.gene63846:intron | 45.0% |
| ! | GATTCGCTTGATGTTAGCCT+CGG | + | chr5.1:75394274-75394293 | None:intergenic | 45.0% |
| !! | AGCTAGGTGAAGTTCTGGAT+CGG | - | chr5.1:75394405-75394424 | MS.gene63846:CDS | 45.0% |
| !! | AAAATCATTAAAATAAAAAA+GGG | - | chr5.1:75394069-75394088 | MS.gene63846:intron | 5.0% |
| !! | ACATATTATATTTATTTATA+TGG | - | chr5.1:75393342-75393361 | MS.gene63846:intron | 5.0% |
| !! | TAAAATCATTAAAATAAAAA+AGG | - | chr5.1:75394068-75394087 | MS.gene63846:intron | 5.0% |
| !!! | TTTCTATTTTTTTTTTTTTT+AGG | - | chr5.1:75392699-75392718 | MS.gene63846:CDS | 5.0% |
| AACCTCTTGGAGTTTGGCGA+TGG | + | chr5.1:75392511-75392530 | None:intergenic | 50.0% | |
| ATAAGCAAGAAAGTGGGCCC+AGG | + | chr5.1:75393907-75393926 | None:intergenic | 50.0% | |
| GAAGATTAGAGCTCGTGGGT+CGG | + | chr5.1:75394206-75394225 | None:intergenic | 50.0% | |
| GAATTCCAGGTCCGACAAAG+CGG | - | chr5.1:75392398-75392417 | MS.gene63846:CDS | 50.0% | |
| GAGAAGGATGGGTCGAGAAT+TGG | - | chr5.1:75394340-75394359 | MS.gene63846:intron | 50.0% | |
| GGTCTTGGATCTTCAACGGT+GGG | - | chr5.1:75393205-75393224 | MS.gene63846:intron | 50.0% | |
| GGTTGAGCTGAATTCGAGCT+AGG | - | chr5.1:75394389-75394408 | MS.gene63846:CDS | 50.0% | |
| GTAGAGGAAGAAGATTGCGG+CGG | - | chr5.1:75394432-75394451 | MS.gene63846:CDS | 50.0% | |
| GTCACAACATTCTCTCCCGA+TGG | - | chr5.1:75392420-75392439 | MS.gene63846:CDS | 50.0% | |
| GTCTTTGCGTGTACTTCTGC+TGG | - | chr5.1:75393144-75393163 | MS.gene63846:intron | 50.0% | |
| GTGGGAAGATTAGAGCTCGT+GGG | + | chr5.1:75394210-75394229 | None:intergenic | 50.0% | |
| TAAGCAAGAAAGTGGGCCCA+GGG | + | chr5.1:75393906-75393925 | None:intergenic | 50.0% | |
| ! | GATCTTCAACGGTGGGTTTG+TGG | - | chr5.1:75393212-75393231 | MS.gene63846:intron | 50.0% |
| ! | TCACCTCCTCAGGTTGTTGA+AGG | - | chr5.1:75393057-75393076 | MS.gene63846:intron | 50.0% |
| !! | ACTGTTTCGTCGGTTGATGG+TGG | + | chr5.1:75394229-75394248 | None:intergenic | 50.0% |
| !! | AGGTGAAGTTCTGGATCGGA+TGG | - | chr5.1:75394409-75394428 | MS.gene63846:CDS | 50.0% |
| !! | CTCGGTGTTTCCTTTGCGAA+CGG | + | chr5.1:75392475-75392494 | None:intergenic | 50.0% |
| !! | CTGTTTCGTCGGTTGATGGT+GGG | + | chr5.1:75394228-75394247 | None:intergenic | 50.0% |
| !! | GGTGAAGTTCTGGATCGGAT+GGG | - | chr5.1:75394410-75394429 | MS.gene63846:CDS | 50.0% |
| AGCCATCGCCAAACTCCAAG+AGG | - | chr5.1:75392506-75392525 | MS.gene63846:intron | 55.0% | |
| CAGCAAGTCTTCACCTCCTC+AGG | - | chr5.1:75393047-75393066 | MS.gene63846:intron | 55.0% | |
| CCACCTTCAACAACCTGAGG+AGG | + | chr5.1:75393063-75393082 | None:intergenic | 55.0% | |
| CCTCCACCTTCAACAACCTG+AGG | + | chr5.1:75393066-75393085 | None:intergenic | 55.0% | |
| GGAGATCGGGACTGTTTCGT+CGG | + | chr5.1:75394239-75394258 | None:intergenic | 55.0% | |
| GGGTCTTGGATCTTCAACGG+TGG | - | chr5.1:75393204-75393223 | MS.gene63846:intron | 55.0% | |
| GGTGGGAAGATTAGAGCTCG+TGG | + | chr5.1:75394211-75394230 | None:intergenic | 55.0% | |
| GTTAGATCCTGTTAGCGCGC+TGG | - | chr5.1:75392767-75392786 | MS.gene63846:intron | 55.0% | |
| TTGGAGTTTGGCGATGGCTG+AGG | + | chr5.1:75392505-75392524 | None:intergenic | 55.0% | |
| ! | CCTCAGGTTGTTGAAGGTGG+AGG | - | chr5.1:75393063-75393082 | MS.gene63846:intron | 55.0% |
| ! | CCTCCTCAGGTTGTTGAAGG+TGG | - | chr5.1:75393060-75393079 | MS.gene63846:intron | 55.0% |
| ! | GGGACTGTTTCGTCGGTTGA+TGG | + | chr5.1:75394232-75394251 | None:intergenic | 55.0% |
| ! | GTTCTGGATCGGATGGGTAG+AGG | - | chr5.1:75394416-75394435 | MS.gene63846:CDS | 55.0% |
| GCTCTCGAAGCCGTTCGCAA+AGG | - | chr5.1:75392462-75392481 | MS.gene63846:intron | 60.0% | |
| TGTGACCGCTTTGTCGGACC+TGG | + | chr5.1:75392406-75392425 | None:intergenic | 60.0% | |
| ! | GATGTTAGCCTCGGGTACCG+TGG | + | chr5.1:75394265-75394284 | None:intergenic | 60.0% |
| ! | TTAGCCTCGGGTACCGTGGT+CGG | + | chr5.1:75394261-75394280 | None:intergenic | 60.0% |
| AGATTGCGGCGGCGAGGAAG+AGG | - | chr5.1:75394443-75394462 | MS.gene63846:CDS | 65.0% | |
| CAGTCCCGATCTCCCGACCA+CGG | - | chr5.1:75394245-75394264 | MS.gene63846:intron | 65.0% | |
| GGAAGAAGATTGCGGCGGCG+AGG | - | chr5.1:75394437-75394456 | MS.gene63846:CDS | 65.0% | |
| GGCGAGGAAGAGGAGGACGA+CGG | - | chr5.1:75394453-75394472 | MS.gene63846:CDS | 65.0% | |
| GGTACCGTGGTCGGGAGATC+GGG | + | chr5.1:75394252-75394271 | None:intergenic | 65.0% | |
| ! | GGGTACCGTGGTCGGGAGAT+CGG | + | chr5.1:75394253-75394272 | None:intergenic | 65.0% |
| ! | TAGCCTCGGGTACCGTGGTC+GGG | + | chr5.1:75394260-75394279 | None:intergenic | 65.0% |
| TCTCCCGACCACGGTACCCG+AGG | - | chr5.1:75394254-75394273 | MS.gene63846:intron | 70.0% | |
| TTGCGGCGGCGAGGAAGAGG+AGG | - | chr5.1:75394446-75394465 | MS.gene63846:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 75392396 | 75394479 | 75392396 | ID=MS.gene63846 |
| chr5.1 | mRNA | 75392396 | 75394479 | 75392396 | ID=MS.gene63846.t1;Parent=MS.gene63846 |
| chr5.1 | exon | 75394348 | 75394479 | 75394348 | ID=MS.gene63846.t1.exon1;Parent=MS.gene63846.t1 |
| chr5.1 | CDS | 75394348 | 75394479 | 75394348 | ID=cds.MS.gene63846.t1;Parent=MS.gene63846.t1 |
| chr5.1 | exon | 75393703 | 75393854 | 75393703 | ID=MS.gene63846.t1.exon2;Parent=MS.gene63846.t1 |
| chr5.1 | CDS | 75393703 | 75393854 | 75393703 | ID=cds.MS.gene63846.t1;Parent=MS.gene63846.t1 |
| chr5.1 | exon | 75392582 | 75392720 | 75392582 | ID=MS.gene63846.t1.exon3;Parent=MS.gene63846.t1 |
| chr5.1 | CDS | 75392582 | 75392720 | 75392582 | ID=cds.MS.gene63846.t1;Parent=MS.gene63846.t1 |
| chr5.1 | exon | 75392396 | 75392464 | 75392396 | ID=MS.gene63846.t1.exon4;Parent=MS.gene63846.t1 |
| chr5.1 | CDS | 75392396 | 75392464 | 75392396 | ID=cds.MS.gene63846.t1;Parent=MS.gene63846.t1 |
| Gene Sequence |
| Protein sequence |
