Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67735.t1 | XP_024632383.1 | 95.6 | 1170 | 48 | 3 | 1 | 1168 | 1 | 1169 | 0.00E+00 | 2209.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67735.t1 | Q9LL84 | 57.1 | 1246 | 427 | 13 | 1 | 1167 | 1 | 1218 | 0.0e+00 | 1342.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67735.t1 | A0A396JA56 | 95.6 | 1170 | 48 | 3 | 1 | 1168 | 1 | 1169 | 0.0e+00 | 2209.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene67735 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene67735 | 0.808489 | 3.02E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene67735 | 0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene67735 | 0.817095 | 3.94E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene67735 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene67735 | 0.822802 | 1.95E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene67735 | 0.869085 | 4.03E-66 | -1.69E-46 |
| MS.gene051744 | MS.gene67735 | 0.829949 | 3.87E-55 | -1.69E-46 |
| MS.gene052016 | MS.gene67735 | 0.837235 | 5.86E-57 | -1.69E-46 |
| MS.gene052037 | MS.gene67735 | 0.819313 | 1.24E-52 | -1.69E-46 |
| MS.gene052118 | MS.gene67735 | 0.807403 | 5.14E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene67735 | -0.808527 | 2.96E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene67735 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene053296 | MS.gene67735 | 0.811035 | 8.56E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene67735 | 0.824064 | 9.88E-54 | -1.69E-46 |
| MS.gene05423 | MS.gene67735 | 0.835629 | 1.50E-56 | -1.69E-46 |
| MS.gene054576 | MS.gene67735 | 0.818447 | 1.95E-52 | -1.69E-46 |
| MS.gene054641 | MS.gene67735 | 0.803366 | 3.61E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene67735 | 0.80475 | 1.86E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene67735 | 0.804196 | 2.43E-49 | -1.69E-46 |
| MS.gene055229 | MS.gene67735 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene055386 | MS.gene67735 | 0.807327 | 5.34E-50 | -1.69E-46 |
| MS.gene05539 | MS.gene67735 | 0.829209 | 5.85E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene67735 | 0.801574 | 8.44E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene67735 | 0.815784 | 7.74E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene67735 | 0.840101 | 1.07E-57 | -1.69E-46 |
| MS.gene057329 | MS.gene67735 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene67735 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene67735 | 0.825603 | 4.28E-54 | -1.69E-46 |
| MS.gene060257 | MS.gene67735 | 0.846101 | 2.68E-59 | -1.69E-46 |
| MS.gene060353 | MS.gene67735 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene060373 | MS.gene67735 | 0.802857 | 4.60E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene67735 | 0.831199 | 1.91E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67735.t1 | MTR_2g038030 | 97.589 | 871 | 20 | 1 | 1 | 871 | 1 | 870 | 0.0 | 1775 |
| MS.gene67735.t1 | MTR_2g038030 | 97.912 | 814 | 17 | 0 | 1 | 814 | 1 | 814 | 0.0 | 1672 |
| MS.gene67735.t1 | MTR_4g057345 | 27.083 | 480 | 277 | 18 | 144 | 582 | 298 | 745 | 1.57e-34 | 143 |
| MS.gene67735.t1 | MTR_4g057340 | 26.554 | 531 | 313 | 21 | 123 | 607 | 229 | 728 | 8.19e-34 | 140 |
| MS.gene67735.t1 | MTR_8g468400 | 23.540 | 565 | 340 | 20 | 103 | 622 | 193 | 710 | 2.15e-31 | 132 |
| MS.gene67735.t1 | MTR_7g082860 | 23.878 | 557 | 337 | 23 | 103 | 599 | 869 | 1398 | 2.93e-26 | 117 |
| MS.gene67735.t1 | MTR_7g082860 | 24.183 | 459 | 282 | 18 | 103 | 509 | 869 | 1313 | 1.68e-23 | 108 |
| MS.gene67735.t1 | MTR_7g082860 | 23.913 | 414 | 257 | 16 | 103 | 467 | 869 | 1273 | 1.81e-19 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67735.t1 | AT5G57160 | 58.635 | 1245 | 410 | 17 | 1 | 1167 | 1 | 1218 | 0.0 | 1409 |
| MS.gene67735.t1 | AT5G57160 | 50.549 | 910 | 346 | 16 | 335 | 1167 | 2 | 884 | 0.0 | 836 |
| MS.gene67735.t1 | AT1G08130 | 27.543 | 403 | 242 | 14 | 214 | 599 | 406 | 775 | 4.62e-31 | 132 |
| MS.gene67735.t1 | AT1G49250 | 27.861 | 402 | 240 | 14 | 214 | 599 | 275 | 642 | 5.71e-30 | 127 |
| MS.gene67735.t1 | AT1G66730 | 24.105 | 531 | 300 | 20 | 135 | 599 | 892 | 1385 | 1.48e-23 | 108 |
Find 248 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGACATCCTTTATTT+TGG | 0.124800 | 2.3:-50953257 | MS.gene67735:CDS |
| GGCTCTTCATTATAGATTTC+TGG | 0.146336 | 2.3:+50945287 | None:intergenic |
| CGCATCTTTCATTTCAATTT+CGG | 0.146942 | 2.3:+50945454 | None:intergenic |
| CGCAAAGTTCCGGAAGTTTC+TGG | 0.169156 | 2.3:-50958708 | MS.gene67735:CDS |
| GATCGTGAACGTGGTTCTTA+TGG | 0.200381 | 2.3:-50958626 | MS.gene67735:CDS |
| TTTCCTGCGCATTTGTCTTT+TGG | 0.201656 | 2.3:+50956612 | None:intergenic |
| GCATCTTTCATTTCAATTTC+GGG | 0.205304 | 2.3:+50945455 | None:intergenic |
| CCACACATCAGGTCTTTCTT+TGG | 0.235300 | 2.3:+50949510 | None:intergenic |
| ATCTTCTTGTAACTTCTTCT+TGG | 0.235960 | 2.3:+50947656 | None:intergenic |
| TACCTCTTGGGATGTGTATT+TGG | 0.248256 | 2.3:+50950927 | None:intergenic |
| GATAAGTGGTCTATCTTTAA+TGG | 0.252938 | 2.3:-50947298 | MS.gene67735:CDS |
| AACGCATGAAATCCTCTATA+AGG | 0.267870 | 2.3:-50948942 | MS.gene67735:CDS |
| AAGCCCATCCCTTGCTGCCT+TGG | 0.272060 | 2.3:+50953550 | None:intergenic |
| ATGCTCTTAGGCTTGTTAAT+TGG | 0.276059 | 2.3:-50958538 | MS.gene67735:CDS |
| TGTTAGAGATGGATACATTT+TGG | 0.276862 | 2.3:+50945885 | None:intergenic |
| ACACAGAGGAATACAGAATA+TGG | 0.288480 | 2.3:-50948988 | MS.gene67735:CDS |
| ATTACAGGTTGCTCAATTCT+TGG | 0.295864 | 2.3:-50950973 | MS.gene67735:intron |
| ATCAACAGTCATCGGTCTTC+TGG | 0.300223 | 2.3:-50953128 | MS.gene67735:intron |
| CATCATATTTGAAAACATTA+AGG | 0.304457 | 2.3:+50948846 | None:intergenic |
| AGGCCACACCTCTGATTCTA+TGG | 0.305848 | 2.3:+50949346 | None:intergenic |
| TCAAAGAAACCATTGAAAAT+AGG | 0.307111 | 2.3:-50951761 | MS.gene67735:intron |
| ATAGAGGATTTCATGCGTTT+TGG | 0.314966 | 2.3:+50948946 | None:intergenic |
| AAACTTGGCGGGCTCGTCTT+TGG | 0.316047 | 2.3:+50949553 | None:intergenic |
| ATCGTGAACGTGGTTCTTAT+GGG | 0.320205 | 2.3:-50958625 | MS.gene67735:CDS |
| CTTTGCAGCATTTATAGAAT+TGG | 0.336806 | 2.3:-50949031 | MS.gene67735:intron |
| TGCTGAGTTTGGCTCTAATC+AGG | 0.337962 | 2.3:-50953662 | MS.gene67735:CDS |
| TTGTCAGCCTCTTGCTCGTT+TGG | 0.338702 | 2.3:+50945638 | None:intergenic |
| TTATTTAGATGCATACTTGA+TGG | 0.339664 | 2.3:-50953721 | MS.gene67735:intron |
| CACAAATTAGTTGCTGAGAA+TGG | 0.342446 | 2.3:-50948038 | MS.gene67735:CDS |
| TCCTTGGTCCAACCTTCGCT+TGG | 0.342809 | 2.3:+50945804 | None:intergenic |
| TTTGGCTCTAATCAGGAAAT+AGG | 0.343984 | 2.3:-50953655 | MS.gene67735:intron |
| ACCGGCATTAGCACCAGTTT+TGG | 0.353044 | 2.3:+50958502 | None:intergenic |
| ATGTTACTTGACATGATTCC+TGG | 0.353332 | 2.3:-50945368 | MS.gene67735:CDS |
| AAGATAGACCACTTATCCTT+TGG | 0.354356 | 2.3:+50947304 | None:intergenic |
| ACAAATTAGTTGCTGAGAAT+GGG | 0.357306 | 2.3:-50948037 | MS.gene67735:CDS |
| TTTATAGAATTGGTGCAATC+TGG | 0.358911 | 2.3:-50949021 | MS.gene67735:CDS |
| CTTAGGCAAGGTACTGCTTC+AGG | 0.359394 | 2.3:-50957408 | MS.gene67735:CDS |
| CGAAGAAACGCGCAAAGTTC+CGG | 0.360226 | 2.3:-50958718 | MS.gene67735:CDS |
| CATTGTGGTGCGGAAATAAA+TGG | 0.364779 | 2.3:+50947270 | None:intergenic |
| ACGCATGAAATCCTCTATAA+GGG | 0.370507 | 2.3:-50948941 | MS.gene67735:CDS |
| TGATTTCTAGGTGGCTACTA+TGG | 0.371262 | 2.3:-50951097 | MS.gene67735:intron |
| CTAGTGACCGCAGTGGAAAA+TGG | 0.374877 | 2.3:-50951265 | MS.gene67735:CDS |
| CACTAGTATCTCCAAAATAA+AGG | 0.380386 | 2.3:+50953246 | None:intergenic |
| CTAGGTGGCTACTATGGTTC+CGG | 0.383285 | 2.3:-50951091 | MS.gene67735:intron |
| AACTTTGCGCGTTTCTTCGC+CGG | 0.384027 | 2.3:+50958722 | None:intergenic |
| ACTTATAGCATTAAGCTCTA+TGG | 0.384309 | 2.3:-50946657 | MS.gene67735:CDS |
| TTTCATACAGGAAAGAAGAT+TGG | 0.390154 | 2.3:-50947114 | MS.gene67735:intron |
| TGAGATTTCCTCGGATTGAC+AGG | 0.392797 | 2.3:-50949199 | MS.gene67735:CDS |
| GATCTGGACGTACTTATCAT+AGG | 0.393024 | 2.3:-50951206 | MS.gene67735:intron |
| CTGTGTTTCGTCTTCATAGT+TGG | 0.394162 | 2.3:+50946964 | None:intergenic |
| TCAGTACTGTCGACCATTAC+AGG | 0.395129 | 2.3:-50947339 | MS.gene67735:CDS |
| GACTGATGTTTCCAGTGTTA+CGG | 0.396642 | 2.3:-50948875 | MS.gene67735:CDS |
| CCTTGGTCCAACCTTCGCTT+GGG | 0.396920 | 2.3:+50945805 | None:intergenic |
| ACTTCGCTTATTGATGCTCT+TGG | 0.397855 | 2.3:-50958581 | MS.gene67735:CDS |
| CGTTCATGCTGGCTCTGATC+TGG | 0.402328 | 2.3:-50951222 | MS.gene67735:CDS |
| CATGCCGCTCCCTCAATGTT+TGG | 0.402984 | 2.3:+50953216 | None:intergenic |
| ACTGATGTTTCCAGTGTTAC+GGG | 0.405352 | 2.3:-50948874 | MS.gene67735:CDS |
| AACTAGTTTGTGAGAAGCTA+AGG | 0.409207 | 2.3:-50956396 | MS.gene67735:CDS |
| CTAAAACATTTATACCTCTT+GGG | 0.410641 | 2.3:+50950915 | None:intergenic |
| TTGAACAAGTCTTCAGCATC+TGG | 0.411971 | 2.3:+50956436 | None:intergenic |
| AGATAGACCACTTATCCTTT+GGG | 0.414023 | 2.3:+50947305 | None:intergenic |
| GAGCCAGCATGAACGTAATC+AGG | 0.415174 | 2.3:+50951230 | None:intergenic |
| AGAAACTCACTTCGGATGTA+AGG | 0.415428 | 2.3:+50947778 | None:intergenic |
| AGCTCTTAAGTAATATTAAT+AGG | 0.416495 | 2.3:-50947372 | MS.gene67735:CDS |
| GTTAGCTTCAAAGCTATTGC+TGG | 0.417372 | 2.3:-50945239 | MS.gene67735:CDS |
| TCTTTGTAGGATATTGAAGT+TGG | 0.418336 | 2.3:-50955849 | MS.gene67735:intron |
| CTCTTAGGCTTGTTAATTGG+AGG | 0.419450 | 2.3:-50958535 | MS.gene67735:CDS |
| AAGACTCGCAGGATGCTCTT+AGG | 0.421770 | 2.3:-50958550 | MS.gene67735:CDS |
| GTGATATCATTCATTATACT+TGG | 0.427455 | 2.3:-50947835 | MS.gene67735:CDS |
| TTCAGGTGGACTGACGATAA+AGG | 0.429437 | 2.3:-50957391 | MS.gene67735:CDS |
| TACTATGGTTCCGGACGACA+TGG | 0.432464 | 2.3:-50951082 | MS.gene67735:CDS |
| AATTGTCTTCGAGCGAAAAC+AGG | 0.436383 | 2.3:-50957347 | MS.gene67735:intron |
| GCGGTCACTAGGTTCCCATT+TGG | 0.437721 | 2.3:+50951277 | None:intergenic |
| TAAAACAGGTGCTGCAGCTT+AGG | 0.438509 | 2.3:-50957425 | MS.gene67735:intron |
| GCAGCCAAGGCAGCAAGGGA+TGG | 0.438584 | 2.3:-50953554 | MS.gene67735:intron |
| TTCATCGCAGATTTGAAGCT+CGG | 0.438840 | 2.3:-50956493 | MS.gene67735:intron |
| AGAAGATATTGATGAGTTCT+CGG | 0.439102 | 2.3:-50947640 | MS.gene67735:CDS |
| CATTCTCAGCAACTAATTTG+TGG | 0.441650 | 2.3:+50948039 | None:intergenic |
| TTCTGAAGACAGATTAACTT+TGG | 0.442662 | 2.3:-50945831 | MS.gene67735:CDS |
| TCTGAACAAAACAAGGGAAT+CGG | 0.444653 | 2.3:-50945521 | MS.gene67735:CDS |
| TTCAACCTTGAATCTCTTCG+AGG | 0.445861 | 2.3:+50947072 | None:intergenic |
| ATTTCAAAACGACCTTTCAA+TGG | 0.449021 | 2.3:+50953170 | None:intergenic |
| AATGTAACCTACCTGAAGTA+AGG | 0.452088 | 2.3:+50950071 | None:intergenic |
| GGCGACAAGAGCGAAATTAC+CGG | 0.456362 | 2.3:+50958484 | None:intergenic |
| AGAAGATTGGCAAATTCTAC+TGG | 0.457385 | 2.3:-50947101 | MS.gene67735:CDS |
| CAGCCAAGGCAGCAAGGGAT+GGG | 0.457661 | 2.3:-50953553 | MS.gene67735:CDS |
| TAAAAGACCTCAGCTCCAAA+TGG | 0.458873 | 2.3:-50951292 | MS.gene67735:CDS |
| TCCTTATGCAGAGTTGGTAC+TGG | 0.460966 | 2.3:-50950137 | MS.gene67735:CDS |
| GTTCTCGGACTCTTACTACT+TGG | 0.462637 | 2.3:-50947625 | MS.gene67735:CDS |
| TTGATGGTGAAATGTTGGTC+TGG | 0.463514 | 2.3:-50953705 | MS.gene67735:CDS |
| TTTACTTCCCTTGTTAGAGA+TGG | 0.463970 | 2.3:+50945874 | None:intergenic |
| TTCGTTGTGTCCATGTTAAG+AGG | 0.466264 | 2.3:+50958753 | None:intergenic |
| CCAAACTAAAACCTTACTTC+AGG | 0.468218 | 2.3:-50950082 | MS.gene67735:intron |
| CTGAACAAAACAAGGGAATC+GGG | 0.471200 | 2.3:-50945520 | MS.gene67735:CDS |
| TCCAGTACCAACTCTGCATA+AGG | 0.473915 | 2.3:+50950136 | None:intergenic |
| AAACTCAGCAAAACGATTCA+AGG | 0.474066 | 2.3:+50953675 | None:intergenic |
| ACCTCGACATGACGATTCAT+AGG | 0.475212 | 2.3:+50945320 | None:intergenic |
| GCAACTCTCTTAGCTAATTG+AGG | 0.476097 | 2.3:+50955813 | None:intergenic |
| CAGGTTGCTCAATTCTTGGT+GGG | 0.478210 | 2.3:-50950969 | MS.gene67735:CDS |
| ACAGGTTGCTCAATTCTTGG+TGG | 0.480093 | 2.3:-50950970 | MS.gene67735:intron |
| TGGTCAGTTCAGAAAGAAAG+AGG | 0.480380 | 2.3:+50947676 | None:intergenic |
| AAGTGTCTTCTGATAATCTT+CGG | 0.480999 | 2.3:+50946676 | None:intergenic |
| AGGAAAGGTGGTGCCAAAAC+TGG | 0.482422 | 2.3:-50958515 | MS.gene67735:CDS |
| CGAGGAAATCTCAGAGAGTA+AGG | 0.483641 | 2.3:+50949209 | None:intergenic |
| GATCATTCTGAATATGCTCA+TGG | 0.485072 | 2.3:-50954610 | MS.gene67735:CDS |
| GTCGTTTATTGCTCATAATG+TGG | 0.486697 | 2.3:-50951802 | MS.gene67735:CDS |
| TTTATCTCCTTATGCAGAGT+TGG | 0.489787 | 2.3:-50950143 | MS.gene67735:CDS |
| CGCAGCTGACGCATGGAAGA+AGG | 0.490413 | 2.3:-50955787 | MS.gene67735:intron |
| GCAAATGAAAAGCACCTTTG+AGG | 0.499631 | 2.3:+50956567 | None:intergenic |
| ACACCTCTGATTCTATGGTT+CGG | 0.500171 | 2.3:+50949351 | None:intergenic |
| TCTCAGTCACCTGACTACTT+TGG | 0.502797 | 2.3:+50945423 | None:intergenic |
| AAGAACCACGTTCACGATCA+AGG | 0.504369 | 2.3:+50958630 | None:intergenic |
| TACTACTTGGATCTCGACCT+TGG | 0.505645 | 2.3:-50947612 | MS.gene67735:CDS |
| ACTTTCCTCGAAGAGATTCA+AGG | 0.507362 | 2.3:-50947077 | MS.gene67735:CDS |
| CCACGTTCACGATCAAGGTT+AGG | 0.507633 | 2.3:+50958635 | None:intergenic |
| ATTCAAGGTTGAAGTTCTCA+TGG | 0.507995 | 2.3:-50947062 | MS.gene67735:CDS |
| TGGACAATTTCTGCACTGAT+CGG | 0.508801 | 2.3:-50958688 | MS.gene67735:CDS |
| TGACTGTTGATACCACCATT+AGG | 0.509488 | 2.3:+50953140 | None:intergenic |
| TTCTATGGTTCGGATGTCAC+TGG | 0.510531 | 2.3:+50949361 | None:intergenic |
| AATCGGGCTAGAGGATTTCA+AGG | 0.510770 | 2.3:-50945504 | MS.gene67735:CDS |
| AAAAGACCTCAGCTCCAAAT+GGG | 0.511343 | 2.3:-50951291 | MS.gene67735:CDS |
| AGGAAAAGAGGAAGACCTCC+AGG | 0.512446 | 2.3:-50945785 | MS.gene67735:CDS |
| TTTCTACTCCTTGAGTACCT+TGG | 0.512727 | 2.3:+50945546 | None:intergenic |
| AGGCTTGTTAATTGGAGGAA+AGG | 0.514400 | 2.3:-50958530 | MS.gene67735:CDS |
| AAGAGTCAATTGCTGAGGAT+TGG | 0.515675 | 2.3:-50946629 | MS.gene67735:intron |
| ACTTTGTTCTTAGCAAGGCC+AGG | 0.519707 | 2.3:+50945350 | None:intergenic |
| TAAACAATCTTCTAACCACT+TGG | 0.521010 | 2.3:+50946707 | None:intergenic |
| GGGCTATCGACCCACACATC+AGG | 0.522533 | 2.3:+50949499 | None:intergenic |
| GCTTATTGATGCTCTTGGAA+TGG | 0.525911 | 2.3:-50958576 | MS.gene67735:CDS |
| CTTACTCTCTGAGATTTCCT+CGG | 0.526292 | 2.3:-50949208 | MS.gene67735:CDS |
| TTAGCTTCATGGTAAGGAAG+TGG | 0.526486 | 2.3:-50955115 | MS.gene67735:intron |
| AATACTGCCCAAAGGATAAG+TGG | 0.528488 | 2.3:-50947312 | MS.gene67735:CDS |
| TCAAGTAACATTGCCTGCAC+AGG | 0.530077 | 2.3:+50945380 | None:intergenic |
| CGACCTTGGAGACATCAAAC+AGG | 0.530095 | 2.3:-50947598 | MS.gene67735:intron |
| TTACAGGGGTGAGAAGACTT+TGG | 0.530480 | 2.3:-50956651 | MS.gene67735:intron |
| TCCTATGCAGCCTCTTAACA+TGG | 0.530636 | 2.3:-50958763 | MS.gene67735:CDS |
| TTGGGATGTGTATTTGGTGA+TGG | 0.535617 | 2.3:+50950933 | None:intergenic |
| AGAGGAAGACCTCCAGGCAG+AGG | 0.536176 | 2.3:-50945779 | MS.gene67735:CDS |
| TAGGTTCCCATTTGGAGCTG+AGG | 0.536396 | 2.3:+50951285 | None:intergenic |
| TAAGGAACCTCCCGTAACAC+TGG | 0.538688 | 2.3:+50948864 | None:intergenic |
| TTGGCATCCCAAGCGAAGGT+TGG | 0.539417 | 2.3:-50945812 | MS.gene67735:CDS |
| AAATGTATCCATCTCTAACA+AGG | 0.540608 | 2.3:-50945882 | MS.gene67735:CDS |
| CATAATTCAAAACATTCTTG+TGG | 0.543837 | 2.3:-50954575 | MS.gene67735:CDS |
| TGGAATGGCGAAAGACTCGC+AGG | 0.544099 | 2.3:-50958561 | MS.gene67735:CDS |
| TTGCTAACGCAGCTGACGCA+TGG | 0.544357 | 2.3:-50955794 | MS.gene67735:CDS |
| GCACAATGACCAAAGTAGTC+AGG | 0.545131 | 2.3:-50945432 | MS.gene67735:CDS |
| GCTCAACTTTGTTCTTAGCA+AGG | 0.545369 | 2.3:+50945345 | None:intergenic |
| ACTATGGTTCCGGACGACAT+GGG | 0.546990 | 2.3:-50951081 | MS.gene67735:CDS |
| GAAACTCACTTCGGATGTAA+GGG | 0.547247 | 2.3:+50947779 | None:intergenic |
| CACAGAGGAATACAGAATAT+GGG | 0.547666 | 2.3:-50948987 | MS.gene67735:CDS |
| TTCACCAAACATTGAGGGAG+CGG | 0.549176 | 2.3:-50953220 | MS.gene67735:CDS |
| AAGGTTGGACCAAGGAAAAG+AGG | 0.550127 | 2.3:-50945797 | MS.gene67735:CDS |
| ATCCCTTACATTGTACATCA+AGG | 0.552029 | 2.3:+50949147 | None:intergenic |
| CAAGAGGCTGACAATGAAGA+AGG | 0.555471 | 2.3:-50945629 | MS.gene67735:CDS |
| CTCAGCAACTAATTTGTGGA+AGG | 0.557590 | 2.3:+50948043 | None:intergenic |
| TGTAATTCACCAAACATTGA+GGG | 0.558580 | 2.3:-50953225 | MS.gene67735:CDS |
| GGTAGAATGAGTCGAATGGC+CGG | 0.559146 | 2.3:+50958656 | None:intergenic |
| CATACTTGATGGTGAAATGT+TGG | 0.559841 | 2.3:-50953710 | MS.gene67735:CDS |
| GTTGAAGTTCTCATGGGTGG+TGG | 0.559913 | 2.3:-50947055 | MS.gene67735:CDS |
| CAAATTAGTTGCTGAGAATG+GGG | 0.561156 | 2.3:-50948036 | MS.gene67735:CDS |
| AAGCCTGATTACGTTCATGC+TGG | 0.561948 | 2.3:-50951233 | MS.gene67735:CDS |
| GTGTAATTCACCAAACATTG+AGG | 0.564843 | 2.3:-50953226 | MS.gene67735:CDS |
| CATAATGTCCAAGGTACTCA+AGG | 0.565766 | 2.3:-50945554 | MS.gene67735:CDS |
| TGATGGTGAAATGTTGGTCT+GGG | 0.566210 | 2.3:-50953704 | MS.gene67735:CDS |
| GAACCAACGTCATAAGCGGC+AGG | 0.567186 | 2.3:-50956368 | MS.gene67735:intron |
| CTATGGTTCCGGACGACATG+GGG | 0.568835 | 2.3:-50951080 | MS.gene67735:CDS |
| GGGTGAGATATGACAAGGAT+TGG | 0.570136 | 2.3:-50949178 | MS.gene67735:CDS |
| CATTGGCAGCCAAGGCAGCA+AGG | 0.570460 | 2.3:-50953559 | MS.gene67735:intron |
| AACTTTGGCATCCCAAGCGA+AGG | 0.571276 | 2.3:-50945816 | MS.gene67735:CDS |
| ATTGGCAGCCAAGGCAGCAA+GGG | 0.572897 | 2.3:-50953558 | MS.gene67735:intron |
| TGGGCTTGAGAGTAATAGAC+AGG | 0.573269 | 2.3:-50953534 | MS.gene67735:intron |
| GCCAAAACTGGTGCTAATGC+CGG | 0.573614 | 2.3:-50958503 | MS.gene67735:CDS |
| TAACCTGCCGCTTATGACGT+TGG | 0.574747 | 2.3:+50956365 | None:intergenic |
| CGCATGAAATCCTCTATAAG+GGG | 0.576879 | 2.3:-50948940 | MS.gene67735:CDS |
| GAGATTTCCTCGGATTGACA+GGG | 0.579631 | 2.3:-50949198 | MS.gene67735:CDS |
| TTCAAAACATTCTTGTGGAT+AGG | 0.580333 | 2.3:-50954570 | MS.gene67735:intron |
| TTACCTGTTTGATGTCTCCA+AGG | 0.581353 | 2.3:+50947595 | None:intergenic |
| TGATATCATTCATTATACTT+GGG | 0.582294 | 2.3:-50947834 | MS.gene67735:CDS |
| AAAGTTGTGAAGCCATTGAA+AGG | 0.582437 | 2.3:-50953182 | MS.gene67735:CDS |
| ACTAGTTTGTGAGAAGCTAA+GGG | 0.582671 | 2.3:-50956395 | MS.gene67735:CDS |
| TCTTCATTATAGATTTCTGG+TGG | 0.583502 | 2.3:+50945290 | None:intergenic |
| GACTCTAGAGAATGAGATGG+AGG | 0.584570 | 2.3:+50948065 | None:intergenic |
| AGAAAGTTCTGAACAAAACA+AGG | 0.587647 | 2.3:-50945528 | MS.gene67735:CDS |
| AGAAATTGTCCAGAAACTTC+CGG | 0.588748 | 2.3:+50958699 | None:intergenic |
| TGCATATAATTAATTCCAAG+TGG | 0.589301 | 2.3:-50946722 | MS.gene67735:CDS |
| AATGTATCCATCTCTAACAA+GGG | 0.591208 | 2.3:-50945881 | MS.gene67735:CDS |
| GACACAACGAACAAAATCAC+CGG | 0.593907 | 2.3:-50958741 | MS.gene67735:CDS |
| GAGAAAACTCATAATGTCCA+AGG | 0.595452 | 2.3:-50945563 | MS.gene67735:CDS |
| CTTGTTAATTGGAGGAAAGG+TGG | 0.599301 | 2.3:-50958527 | MS.gene67735:CDS |
| GAATTGGTGCAATCTGGCAA+TGG | 0.600237 | 2.3:-50949015 | MS.gene67735:CDS |
| TAAAAGACCAAACGAGCAAG+AGG | 0.600892 | 2.3:-50945645 | MS.gene67735:CDS |
| AATTATGACTGATCCTGTGC+AGG | 0.601653 | 2.3:-50945393 | MS.gene67735:CDS |
| AAACAAGGGAATCGGGCTAG+AGG | 0.601883 | 2.3:-50945513 | MS.gene67735:CDS |
| TATCCAAAAGACAAATGCGC+AGG | 0.604732 | 2.3:-50956615 | MS.gene67735:CDS |
| GTTGCTGAGTGCAAATTTGA+CGG | 0.605544 | 2.3:-50955093 | MS.gene67735:CDS |
| CAACTCCGCAACTCATGTGG+TGG | 0.605549 | 2.3:-50947014 | MS.gene67735:CDS |
| TCTCAACTCCGCAACTCATG+TGG | 0.606001 | 2.3:-50947017 | MS.gene67735:CDS |
| ATCATTCTGAATATGCTCAT+GGG | 0.606149 | 2.3:-50954609 | MS.gene67735:CDS |
| CAAGGCCACCACATGAGTTG+CGG | 0.608265 | 2.3:+50947009 | None:intergenic |
| AAGGTTGAAGTTCTCATGGG+TGG | 0.609804 | 2.3:-50947058 | MS.gene67735:CDS |
| CAAAGAAAGACCTGATGTGT+GGG | 0.609989 | 2.3:-50949509 | MS.gene67735:CDS |
| CAAATGCGCAGGAAATGAAG+TGG | 0.610831 | 2.3:-50956604 | MS.gene67735:CDS |
| TTCAAGGTTGAAGTTCTCAT+GGG | 0.610935 | 2.3:-50947061 | MS.gene67735:CDS |
| CCAAAGAAAGACCTGATGTG+TGG | 0.611936 | 2.3:-50949510 | MS.gene67735:CDS |
| TGTGTTGCAGCAGACAGCAA+AGG | 0.612408 | 2.3:-50947975 | MS.gene67735:intron |
| CCTAACCTTGATCGTGAACG+TGG | 0.612567 | 2.3:-50958635 | MS.gene67735:CDS |
| TAGTTGGTAGTATGACAACT+TGG | 0.613588 | 2.3:+50946980 | None:intergenic |
| CAGGTGCTGCAGCTTAGGCA+AGG | 0.614425 | 2.3:-50957420 | MS.gene67735:CDS |
| TTGGTGATGGACGCTCTGCA+AGG | 0.615747 | 2.3:+50950946 | None:intergenic |
| AAGGACTCTAGAGAATGAGA+TGG | 0.618920 | 2.3:+50948062 | None:intergenic |
| ATGGTGGTATCAACAGTCAT+CGG | 0.619304 | 2.3:-50953136 | MS.gene67735:CDS |
| ATCGGAACCAACGTCATAAG+CGG | 0.622010 | 2.3:-50956372 | MS.gene67735:CDS |
| ATCAGTCTGACTTAAATGAG+AGG | 0.625611 | 2.3:+50948891 | None:intergenic |
| ATCATCATGATAATCCTCAA+AGG | 0.628054 | 2.3:-50956581 | MS.gene67735:intron |
| CATCCGAACCATAGAATCAG+AGG | 0.628768 | 2.3:-50949354 | MS.gene67735:intron |
| ACCTATGAATCGTCATGTCG+AGG | 0.631313 | 2.3:-50945321 | MS.gene67735:CDS |
| TCAGTCTGACTTAAATGAGA+GGG | 0.633446 | 2.3:+50948892 | None:intergenic |
| TTTCGCTCTTGTCGCCACCG+AGG | 0.634235 | 2.3:-50958477 | MS.gene67735:intron |
| TTTACTGAAGCTTACAACGA+TGG | 0.635829 | 2.3:+50947247 | None:intergenic |
| TCCATGTTAAGAGGCTGCAT+AGG | 0.637128 | 2.3:+50958762 | None:intergenic |
| AAACTCACTTCGGATGTAAG+GGG | 0.637301 | 2.3:+50947780 | None:intergenic |
| ACAACGATGGCATTGTGGTG+CGG | 0.641742 | 2.3:+50947260 | None:intergenic |
| TTTGTGAGAAGCTAAGGGAT+CGG | 0.642459 | 2.3:-50956390 | MS.gene67735:CDS |
| TTTGTAATACCTCTGCCTGG+AGG | 0.642763 | 2.3:+50945770 | None:intergenic |
| ATGAAGACGAAACACAGAGT+AGG | 0.645231 | 2.3:-50946958 | MS.gene67735:intron |
| GTTTATTGCTCATAATGTGG+AGG | 0.646705 | 2.3:-50951799 | MS.gene67735:CDS |
| ACTCTAGAGAATGAGATGGA+GGG | 0.650596 | 2.3:+50948066 | None:intergenic |
| ATATTCTGTATTCCTCTGTG+TGG | 0.653462 | 2.3:+50948990 | None:intergenic |
| TATCTCACCCTGTCAATCCG+AGG | 0.653899 | 2.3:+50949191 | None:intergenic |
| CCCAAGCGAAGGTTGGACCA+AGG | 0.654084 | 2.3:-50945805 | MS.gene67735:CDS |
| ATGACAACTTGGTAAGAACA+AGG | 0.660706 | 2.3:+50946991 | None:intergenic |
| GTTATGCAGGTGAACCATGT+TGG | 0.664369 | 2.3:-50951824 | MS.gene67735:intron |
| AAATTAGTTGCTGAGAATGG+GGG | 0.666229 | 2.3:-50948035 | MS.gene67735:CDS |
| GAAAGTTCTGAACAAAACAA+GGG | 0.667059 | 2.3:-50945527 | MS.gene67735:CDS |
| GTTAGGTAGAATGAGTCGAA+TGG | 0.668719 | 2.3:+50958652 | None:intergenic |
| CACCAAATACACATCCCAAG+AGG | 0.671367 | 2.3:-50950929 | MS.gene67735:intron |
| AATAGAAGAGTCAATTGCTG+AGG | 0.671750 | 2.3:-50946634 | MS.gene67735:CDS |
| AGGCAAGGTACTGCTTCAGG+TGG | 0.680836 | 2.3:-50957405 | MS.gene67735:CDS |
| TGACAGGGTGAGATATGACA+AGG | 0.681495 | 2.3:-50949183 | MS.gene67735:CDS |
| TACAGAATATGGGAGCAACA+AGG | 0.689505 | 2.3:-50948977 | MS.gene67735:CDS |
| AGCTTACAACGATGGCATTG+TGG | 0.691004 | 2.3:+50947255 | None:intergenic |
| GATGTTTCCAGTGTTACGGG+AGG | 0.692522 | 2.3:-50948871 | MS.gene67735:CDS |
| TGAGCAATAAACGACCAACA+TGG | 0.706562 | 2.3:+50951810 | None:intergenic |
| TGGGAACCTAGTGACCGCAG+TGG | 0.710053 | 2.3:-50951272 | MS.gene67735:CDS |
| TTTGAAGCAGCAAAACGTCG+TGG | 0.716241 | 2.3:-50947857 | MS.gene67735:CDS |
| TATGGTTCCGGACGACATGG+GGG | 0.721266 | 2.3:-50951079 | MS.gene67735:CDS |
| CTTGTAGAAGATAACCTCGG+TGG | 0.744454 | 2.3:+50958463 | None:intergenic |
| CTGGCAATGGTACCACACAG+AGG | 0.767435 | 2.3:-50949002 | MS.gene67735:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 50945217 | 50958810 | 50945217 | ID=MS.gene67735 |
| chr2.3 | mRNA | 50945217 | 50958810 | 50945217 | ID=MS.gene67735.t1;Parent=MS.gene67735 |
| chr2.3 | exon | 50958478 | 50958810 | 50958478 | ID=MS.gene67735.t1.exon1;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50958478 | 50958810 | 50958478 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50957348 | 50957439 | 50957348 | ID=MS.gene67735.t1.exon2;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50957348 | 50957439 | 50957348 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50956582 | 50956667 | 50956582 | ID=MS.gene67735.t1.exon3;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50956582 | 50956667 | 50956582 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50956369 | 50956505 | 50956369 | ID=MS.gene67735.t1.exon4;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50956369 | 50956505 | 50956369 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50955788 | 50955862 | 50955788 | ID=MS.gene67735.t1.exon5;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50955788 | 50955862 | 50955788 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50955042 | 50955133 | 50955042 | ID=MS.gene67735.t1.exon6;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50955042 | 50955133 | 50955042 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50954571 | 50954642 | 50954571 | ID=MS.gene67735.t1.exon7;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50954571 | 50954642 | 50954571 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50953656 | 50953735 | 50953656 | ID=MS.gene67735.t1.exon8;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50953656 | 50953735 | 50953656 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50953535 | 50953572 | 50953535 | ID=MS.gene67735.t1.exon9;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50953535 | 50953572 | 50953535 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50953447 | 50953453 | 50953447 | ID=MS.gene67735.t1.exon10;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50953447 | 50953453 | 50953447 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50953129 | 50953284 | 50953129 | ID=MS.gene67735.t1.exon11;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50953129 | 50953284 | 50953129 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50951762 | 50951837 | 50951762 | ID=MS.gene67735.t1.exon12;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50951762 | 50951837 | 50951762 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50951207 | 50951331 | 50951207 | ID=MS.gene67735.t1.exon13;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50951207 | 50951331 | 50951207 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50951075 | 50951109 | 50951075 | ID=MS.gene67735.t1.exon14;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50951075 | 50951109 | 50951075 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50950930 | 50950988 | 50950930 | ID=MS.gene67735.t1.exon15;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50950930 | 50950988 | 50950930 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50950083 | 50950166 | 50950083 | ID=MS.gene67735.t1.exon16;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50950083 | 50950166 | 50950083 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50949493 | 50949582 | 50949493 | ID=MS.gene67735.t1.exon17;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50949493 | 50949582 | 50949493 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50949355 | 50949403 | 50949355 | ID=MS.gene67735.t1.exon18;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50949355 | 50949403 | 50949355 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50949156 | 50949243 | 50949156 | ID=MS.gene67735.t1.exon19;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50949156 | 50949243 | 50949156 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50948842 | 50949045 | 50948842 | ID=MS.gene67735.t1.exon20;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50948842 | 50949045 | 50948842 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50947976 | 50948101 | 50947976 | ID=MS.gene67735.t1.exon21;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50947976 | 50948101 | 50947976 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50947788 | 50947887 | 50947788 | ID=MS.gene67735.t1.exon22;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50947788 | 50947887 | 50947788 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50947599 | 50947704 | 50947599 | ID=MS.gene67735.t1.exon23;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50947599 | 50947704 | 50947599 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50947262 | 50947392 | 50947262 | ID=MS.gene67735.t1.exon24;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50947262 | 50947392 | 50947262 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50946959 | 50947126 | 50946959 | ID=MS.gene67735.t1.exon25;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50946959 | 50947126 | 50946959 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50946630 | 50946785 | 50946630 | ID=MS.gene67735.t1.exon26;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50946630 | 50946785 | 50946630 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| chr2.3 | exon | 50945217 | 50945958 | 50945217 | ID=MS.gene67735.t1.exon27;Parent=MS.gene67735.t1 |
| chr2.3 | CDS | 50945217 | 50945958 | 50945217 | ID=cds.MS.gene67735.t1;Parent=MS.gene67735.t1 |
| Gene Sequence |
| Protein sequence |