AlfalfaGEDB | MS.gene68993

M. sativa cultivar XinJiangDaYe / MS.gene68993

KEGG: K02357
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0005488 GO:0005515 GO:0006414 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0034645 GO:0043170 GO:0044237 GO:0044249 GO:0044260 GO:0045182 GO:0071704 GO:0090079 GO:0097159 GO:1901363 GO:1901576
PFAM: PF00889.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68993.t1	XP_003620654.1	81	368	48	2	7	352	678	1045	2.00E-148	535.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68993.t1	B7K735	64.0	186	66	1	165	349	12	197	7.7e-64	245.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68993.t1	G7KPU0	81.0	368	48	2	7	352	678	1045	1.5e-148	535.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050026	MS.gene68993	0.813383	2.63E-51	-1.69E-46
MS.gene050442	MS.gene68993	0.802908	4.49E-49	-1.69E-46
MS.gene050750	MS.gene68993	0.8246	7.39E-54	-1.69E-46
MS.gene050787	MS.gene68993	0.820451	6.81E-53	-1.69E-46
MS.gene050953	MS.gene68993	0.814036	1.89E-51	-1.69E-46
MS.gene051265	MS.gene68993	0.801872	7.34E-49	-1.69E-46
MS.gene052190	MS.gene68993	0.804291	2.32E-49	-1.69E-46
MS.gene052519	MS.gene68993	0.802361	5.82E-49	-1.69E-46
MS.gene053221	MS.gene68993	0.832108	1.14E-55	-1.69E-46
MS.gene054236	MS.gene68993	0.817546	3.12E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68993.t1	MTR_6g088270	84.824	369	32	3	7	352	678	1045	0.0	597
MS.gene68993.t1	MTR_6g088270	72.973	185	50	0	165	349	617	801	2.09e-89	290
MS.gene68993.t1	MTR_6g088270	66.406	128	43	0	7	134	919	1046	3.67e-50	180
MS.gene68993.t1	MTR_6g087300	50.986	355	71	6	7	333	78	357	1.95e-93	283
MS.gene68993.t1	MTR_6g087300	42.105	152	42	3	198	349	50	155	2.90e-26	108
MS.gene68993.t1	MTR_2g039780	74.522	157	24	3	193	348	62	203	4.49e-69	216
MS.gene68993.t1	MTR_2g039780	53.571	140	46	4	7	145	95	216	7.72e-36	130
MS.gene68993.t1	MTR_6g084360	57.589	224	58	2	137	352	914	1108	4.00e-65	223
MS.gene68993.t1	MTR_6g084360	48.438	128	37	1	7	134	1011	1109	1.79e-27	114
MS.gene68993.t1	MTR_6g088240	60.000	185	63	5	174	349	1	183	2.46e-56	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68993.t1	AT4G29060	71.271	362	85	2	7	349	588	949	1.74e-167	492
MS.gene68993.t1	AT4G29060	69.524	210	61	1	143	349	502	711	4.50e-92	295
MS.gene68993.t1	AT4G29060	65.600	125	43	0	7	131	826	950	1.08e-46	170
MS.gene68993.t1	AT4G29060	70.952	210	52	2	143	349	502	705	2.08e-94	296
MS.gene68993.t1	AT4G29060	64.800	125	38	1	7	131	588	706	1.02e-44	163
MS.gene68993.t1	AT4G11120	47.727	88	43	2	165	252	81	165	1.91e-12	68.2

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Find 72 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCCTTGCCGAAACTGA+AGG	0.599990	6.2:+87086311	MS.gene68993:CDS
AACTACTCCAGTGAAAGAGG+AGG	0.687548	6.2:+87084300	MS.gene68993:CDS
AACTGAAGGTGATCTTGAAA+AGG	0.505949	6.2:+87086325	MS.gene68993:CDS
AACTGTGAAACCGACTTTGT+TGG	0.501257	6.2:+87086470	MS.gene68993:CDS
AAGCAGACAATTGCAACTAT+TGG	0.386183	6.2:+87084166	MS.gene68993:CDS
AAGTACTGATCCTACTGTCA+TGG	0.546305	6.2:-87083837	None:intergenic
AAGTGAGAAATTCAAGGAGT+TGG	0.486954	6.2:+87086496	MS.gene68993:CDS
ACACTGTCATCCTTAATGAA+AGG	0.591158	6.2:-87086722	None:intergenic
ACAGTCCATCATCCCAGCAC+CGG	0.565927	6.2:-87086285	None:intergenic
ACGGATAAGGAAGAGACTTG+AGG	0.668138	6.2:+87084081	MS.gene68993:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTCAACACTGGAAAAAT+CGG	+	chr6.2:87084764-87084783	MS.gene68993:intron	30.0%
AGTTTGAGGAATTCAGAAAT+CGG	+	chr6.2:87084695-87084714	MS.gene68993:intron	30.0%
ATCATTGAAGGAGTTTAACA+AGG	+	chr6.2:87085001-87085020	MS.gene68993:intron	30.0%
ATTCTTGATCTAATTAGCTC+TGG	-	chr6.2:87084052-87084071	None:intergenic	30.0%
CAAAATATGCGATCCAAAAA+AGG	-	chr6.2:87084823-87084842	None:intergenic	30.0%
CAAGCATACCTTAGAAAAAA+GGG	+	chr6.2:87086350-87086369	MS.gene68993:CDS	30.0%
CACTTTATCATTCTTGATGT+AGG	-	chr6.2:87084128-87084147	None:intergenic	30.0%
CATAACAAACATGTTCATCT+AGG	-	chr6.2:87085117-87085136	None:intergenic	30.0%
CATAAGAGAGAAAATTGTTG+AGG	+	chr6.2:87086655-87086674	MS.gene68993:CDS	30.0%
CCTAATCTTCAAATTCACTA+AGG	+	chr6.2:87085362-87085381	MS.gene68993:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	87083839	87086865	87083839	ID=MS.gene68993
chr6.2	mRNA	87083839	87086865	87083839	ID=MS.gene68993.t1;Parent=MS.gene68993
chr6.2	exon	87083839	87084229	87083839	ID=MS.gene68993.t1.exon1;Parent=MS.gene68993.t1
chr6.2	CDS	87083839	87084229	87083839	ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1
chr6.2	exon	87084290	87084359	87084290	ID=MS.gene68993.t1.exon2;Parent=MS.gene68993.t1
chr6.2	CDS	87084290	87084359	87084290	ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1
chr6.2	exon	87086241	87086865	87086241	ID=MS.gene68993.t1.exon3;Parent=MS.gene68993.t1
chr6.2	CDS	87086241	87086865	87086241	ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1

Gene Sequence

>MS.gene68993

ATGACAGTAGGATCAGTACTTTTGGTAGAAGTAAATTGCGAGGAAAATTTTGTCTCCCGAGGTGAAATTTTCAAAGAGCTTGTTGATGATATAGTCATGCAAGTGGCGGCATGCCCTCAAGTAGAGTATGTTGTTACCGATGACGTTCCTGAGGAATTCGTGAAGAAAGAAACGGAGATAGAAATGCAAAAAGAAGATCTTGCATCAAAACCAGAGCTAATTAGATCAAGAATTGTTGAAGGACGGATAAGGAAGAGACTTGAGGATTTAGTGTTGCTTGAGCAGCCCTACATCAAGAATGATAAAGTGACAGTAAAGGATATGGTTAAGCAGACAATTGCAACTATTGGAGAAAATACGAATGTTACAAGGTTTGTGTGGTTCAACCTCGGTGAGGGTTTGGAAAAGAAAAGCCAGGATTTTGCTGCTTAAGTCGCTGCACAAACTGCAGCAAAAACGGTAACTACTCCAGTGAAAGAGGAGGCTGCTGCTGCTGCAGAAGCGAAGGAGACTGAACCAAAGTAAGTGTAGTTCTATGAATTTCTACTTGTTATTGAGTTATTTGATTATGAAATTTTGGTAATTAGTTCCTGGAGTGTGCATTTGTTAAGATTTAGATACATTCAAAAAGGCAAAACTACACCATGGGTCCTTTAACTGAATTTAAAGTTTCAAACAGGTCCTTGATCTTTTTTTCGTGTCAATTTAGTCATTTCTTCATGTCAAGTTGGTTCTTTTGTTTAAAAACGTTAATGATGACACCCTGTCATCCTAGTTTATTAGGCACTTTTTATGTAATGTGGGCCATTTTTGATGTAATTCTGGGAGCTAGAAGCCACAAAGGAGGAAAAACACAAGTTTGAGGAATTCAGAAATCGGTCACCGTTATTTCCAATCAGCCATCGATTTTGCTGCTGAATTTCCAACTTTCAACACTGGAAAAATCGGTTACCGATGGCCTTGCATCGGCTACCGATTCTGCCTTTTTTGGATCGCATATTTTGGGCTTAAGTGGGCAATCAGTTACCGATTGGATGCCATCGGTAACCGATTTTGCATGTGTCTATTTAAAGGAACTCGGTCTCAGACTTAGAGATTGCGATTTTTTGGAGATCAAAAGACCTAGAAACACATAGGAGAGCGATTTGGAGCAACTTGGAACATCATTGAAGGAGTTTAACAAGGTTTATTCTTGAATTCATCTTGTAATTCTTCTTCTATTGTTTATTGCTTGATTATGTGTAACTAAACCCTCCTTTGTTGGGGATGAGTAGACCTAGATGAACATGTTTGTTATGACCTAGTTTATTCTATTGATTGAAATTCATATGATTGTTTCTCTTATTTCCGTTCTTAATGCTTTTTATTGTGTCGGCCGCCTTTAAATTGATGTACGGTTTATTTTGTGATACGGAAGTGGAATTGATAAACGCTTTGAAATAAGAGATCCTTGCCTTTGTAATCTAGGAATAGATACAAACCCTTGGAATCATTAAAAGAATTCTTGTTCGTTAATGCTTAACCCTAATCTTCAAATTCACTAAGGAATTAGGTCTTTATTTTAGGTTTAAAGTTTTTGTCACTAAGGAATTAGGGCAAGAATAAATTAGATAATTCGGTAACAATCATATGAGTCGATTCAATAGTTGAGACTAGGTTATTAGCTTTTCATGGTCATCTAGCGAAACTCATCCCTAGCATCTTTCTCCCATTAATCTTAATCACTTTATTTTCCGTTATTTTCAATATTGCGATAAAACAAACAACTTAACCTTTTGTTCAATTAAGTCATAAATACAATTCAACAGTATAACGCAATCCTCGAGTTCGACACTCGGTCTTACCGATTTAAATTACTACTTGAACGATTTCGTACACTTGCGAGATACGCCATCAGTTAACATGTAGGATTAAACTTCATTTTTAATGTATGTTATCAAAAGTCTAATTGACCATTTAAAAAGGTACATTACGTCTTCTGTTCATCAAGGTTACATCTAAAATATATCATATTGTCTGTTACAATATCTAAGATTGGGACCTTGCTGTCAACGAAAGTCCAATTGTGGTACTGAGTGGCGAATTTATTTTTATAGTATTGATTTATTATTTACAAAAATTTGTAATTGAATTGGTCTAAAATTAAGTGAAAGAACTACTGGTGTAGTTTCTCCCATTCTAAAATTTCTATAATTATGCCAAACTAGACATCATGTTGGTGATTGCTTTAACTTTATGTATTAATTAGATTTGTTGTGTGCTAAAACGTTGAAACAGCGACTTGCATTTTCTCATTTTTCTATTTTTTTCATTCACTTCAAATTTATATTAAGAGAAGAAACCGGTGCTGGGATGATGGACTGTAACTCTTAAACTGTTTACTGTTCAATGTTGTGTTGCAGGAAATCAATAGTTGTGGTTTCGGCTTCAGTGGTAAGAGAAGAAACCGGTGCTGGGATGATGGACTGTAAGAAAGCCCTTGCCGAAACTGAAGGTGATCTTGAAAAGGCGCAAGCATACCTTAGAAAAAAGGGTCTCTCATCAGCTGACAAGAAATCCGATAGACTAACAGCTGAAGGAAGGATCGGTAAATACATTCACGATGCACACATCGGTGTTCTAATCGAAGTGAACTGTGAAACCGACTTTGTTGGAAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCACAGGTTCAGTTTGTATCTATTGAAGATATTCCCGAAACTATTGTGACGAAGGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGCTTCGAAACCCGAGAACATAAGAGAGAAAATTGTTGAGGGAAGAATCTCAAAGAGGTTAGGAGATCTTGCTCTTATAGAGCAGCCTTTCATTAAGGATGACAGTGTTTCAGTGAAAGACTTGGTGAGGCAAAGTATAGCTGCCATTGGAGAGAACATTAAAGTGCGTCGTTTTGTTCGGTTCACTCTCTTTAAAACATGGTGGACCACAGCAGCACAGCTCATTTGA

Protein sequence

>MS.gene68993.t1

MTVGSVLLVEVNCEENFVSRGEIFKELVDDIVMQVAACPQVEYVVTDDVPEEFVKKETEIEMQKEDLASKPELIRSRIVEGRIRKRLEDLVLLEQPYIKNDKVTVKDMVKQTIATIGENTNVTRFVWFNLAKTVTTPVKEEAAAAAEAKETEPKKSIVVVSASVVREETGAGMMDCKKALAETEGDLEKAQAYLRKKGLSSADKKSDRLTAEGRIGKYIHDAHIGVLIEVNCETDFVGRSEKFKELVDDLAMQVAACPQVQFVSIEDIPETIVTKEKELEMQREDLASKPENIREKIVEGRISKRLGDLALIEQPFIKDDSVSVKDLVRQSIAAIGENIKVRRFVRFTLFKTWWTTAAQLI