AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68993


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68993.t1 MTR_6g088270 84.824 369 32 3 7 352 678 1045 0.0 597
MS.gene68993.t1 MTR_6g088270 72.973 185 50 0 165 349 617 801 2.09e-89 290
MS.gene68993.t1 MTR_6g088270 66.406 128 43 0 7 134 919 1046 3.67e-50 180
MS.gene68993.t1 MTR_6g087300 50.986 355 71 6 7 333 78 357 1.95e-93 283
MS.gene68993.t1 MTR_6g087300 42.105 152 42 3 198 349 50 155 2.90e-26 108
MS.gene68993.t1 MTR_2g039780 74.522 157 24 3 193 348 62 203 4.49e-69 216
MS.gene68993.t1 MTR_2g039780 53.571 140 46 4 7 145 95 216 7.72e-36 130
MS.gene68993.t1 MTR_6g084360 57.589 224 58 2 137 352 914 1108 4.00e-65 223
MS.gene68993.t1 MTR_6g084360 48.438 128 37 1 7 134 1011 1109 1.79e-27 114
MS.gene68993.t1 MTR_6g088240 60.000 185 63 5 174 349 1 183 2.46e-56 182
MS.gene68993.t1 MTR_6g088240 58.511 94 39 0 37 130 90 183 3.78e-31 116
MS.gene68993.t1 MTR_0428s0020 54.639 194 30 4 154 344 38 176 2.02e-49 166
MS.gene68993.t1 MTR_0428s0020 32.571 175 63 4 11 185 103 222 1.45e-15 75.5
MS.gene68993.t1 MTR_6g027070 59.155 142 39 2 165 306 21 143 1.89e-46 155
MS.gene68993.t1 MTR_6g027070 83.607 61 10 0 27 87 83 143 4.59e-25 99.8
MS.gene68993.t1 MTR_2g039790 72.973 111 14 2 154 261 15 112 2.69e-44 150
MS.gene68993.t1 MTR_6g488290 53.039 181 27 4 154 331 38 163 2.05e-43 149
MS.gene68993.t1 MTR_6g088250 78.409 88 16 1 154 238 1255 1342 3.61e-33 131
MS.gene68993.t1 MTR_6g087200 73.611 72 9 1 8 79 1043 1104 5.79e-23 100
MS.gene68993.t1 MTR_6g087200 53.086 81 28 1 218 298 1034 1104 1.09e-19 91.3
MS.gene68993.t1 MTR_6g066260 49.474 95 48 0 185 279 3 97 1.20e-22 91.7
MS.gene68993.t1 MTR_6g066260 81.481 54 10 0 7 60 44 97 1.22e-21 88.6
MS.gene68993.t1 MTR_6g003970 46.067 89 47 1 165 253 35 122 1.85e-14 73.9
MS.gene68993.t1 MTR_6g087190 71.795 39 11 0 205 243 15 53 1.41e-12 62.8
MS.gene68993.t1 MTR_6g081090 82.051 39 4 1 154 189 5 43 4.98e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68993.t1 AT4G29060 71.271 362 85 2 7 349 588 949 1.74e-167 492
MS.gene68993.t1 AT4G29060 69.524 210 61 1 143 349 502 711 4.50e-92 295
MS.gene68993.t1 AT4G29060 65.600 125 43 0 7 131 826 950 1.08e-46 170
MS.gene68993.t1 AT4G29060 70.952 210 52 2 143 349 502 705 2.08e-94 296
MS.gene68993.t1 AT4G29060 64.800 125 38 1 7 131 588 706 1.02e-44 163
MS.gene68993.t1 AT4G11120 47.727 88 43 2 165 252 81 165 1.91e-12 68.2

Find 72 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTCGTCACAATAGTTT+CGG 0.269335 6.2:-87086585 None:intergenic
TATAGAGCAGCCTTTCATTA+AGG 0.293654 6.2:+87086712 MS.gene68993:CDS
GAAATCAATAGTTGTGGTTT+CGG 0.340566 6.2:+87086241 MS.gene68993:CDS
TTCAAGATCACCTTCAGTTT+CGG 0.351241 6.2:-87086321 None:intergenic
TCCTTCGTCACAATAGTTTC+GGG 0.358591 6.2:-87086584 None:intergenic
GACAGTAGGATCAGTACTTT+TGG 0.362449 6.2:+87083841 MS.gene68993:CDS
CACTTTATCATTCTTGATGT+AGG 0.372974 6.2:-87084125 None:intergenic
AAGCAGACAATTGCAACTAT+TGG 0.386183 6.2:+87084166 MS.gene68993:CDS
TAAAGTGACAGTAAAGGATA+TGG 0.403790 6.2:+87084141 MS.gene68993:CDS
CTCTTTGAAAATTTCACCTC+GGG 0.404855 6.2:-87083894 None:intergenic
ACTTTATCATTCTTGATGTA+GGG 0.407592 6.2:-87084124 None:intergenic
TCCTTCAGCTGTTAGTCTAT+CGG 0.432405 6.2:-87086396 None:intergenic
TGCTGCTGCTGCAGAAGCGA+AGG 0.440220 6.2:+87084324 MS.gene68993:CDS
ATTCTTGATCTAATTAGCTC+TGG 0.440910 6.2:-87084049 None:intergenic
GGAAGAATCTCAAAGAGGTT+AGG 0.441763 6.2:+87086677 MS.gene68993:CDS
TCTTTCTTCACGAATTCCTC+AGG 0.445506 6.2:-87083986 None:intergenic
TGGAAGAAGTGAGAAATTCA+AGG 0.470199 6.2:+87086490 MS.gene68993:CDS
AGAAACCGGTGCTGGGATGA+TGG 0.476329 6.2:+87086280 MS.gene68993:CDS
ATTAGATCAAGAATTGTTGA+AGG 0.483097 6.2:+87084058 MS.gene68993:CDS
AAGTGAGAAATTCAAGGAGT+TGG 0.486954 6.2:+87086496 MS.gene68993:CDS
CACTTTAATGTTCTCTCCAA+TGG 0.489563 6.2:-87086780 None:intergenic
ATAAGAGAGAAAATTGTTGA+GGG 0.490179 6.2:+87086656 MS.gene68993:CDS
GCAGCAGCCTCCTCTTTCAC+TGG 0.493343 6.2:-87084307 None:intergenic
GCAAGTTGCTGCTTGTCCAC+AGG 0.499547 6.2:+87086535 MS.gene68993:CDS
CTCACTTCTTCCAACAAAGT+CGG 0.500059 6.2:-87086480 None:intergenic
AACTGTGAAACCGACTTTGT+TGG 0.501257 6.2:+87086470 MS.gene68993:CDS
AACTGAAGGTGATCTTGAAA+AGG 0.505949 6.2:+87086325 MS.gene68993:CDS
TGTTCTCGGGTTTCGAAGCA+AGG 0.510741 6.2:-87086634 None:intergenic
TCAAATGAGCTGTGCTGCTG+TGG 0.512981 6.2:-87086843 None:intergenic
ATCACCTTCAGTTTCGGCAA+GGG 0.513216 6.2:-87086315 None:intergenic
CATAAGAGAGAAAATTGTTG+AGG 0.519674 6.2:+87086655 MS.gene68993:CDS
GAGAAAATACGAATGTTACA+AGG 0.530407 6.2:+87084188 MS.gene68993:CDS
GTAAGAGAAGAAACCGGTGC+TGG 0.531242 6.2:+87086272 MS.gene68993:CDS
GGTAACTACTCCAGTGAAAG+AGG 0.540209 6.2:+87084297 MS.gene68993:CDS
AGTTGTGGTTTCGGCTTCAG+TGG 0.543544 6.2:+87086250 MS.gene68993:CDS
AAGTACTGATCCTACTGTCA+TGG 0.546305 6.2:-87083837 None:intergenic
TAACAACATACTCTACTTGA+GGG 0.551546 6.2:-87083952 None:intergenic
AGGCAAAGTATAGCTGCCAT+TGG 0.552004 6.2:+87086764 MS.gene68993:CDS
TCCGATAGACTAACAGCTGA+AGG 0.552132 6.2:+87086395 MS.gene68993:CDS
GTAACAACATACTCTACTTG+AGG 0.555265 6.2:-87083953 None:intergenic
GAATGATAAAGTGACAGTAA+AGG 0.564402 6.2:+87084135 MS.gene68993:CDS
GGTTCACTCTCTTTAAAACA+TGG 0.564855 6.2:+87086816 MS.gene68993:CDS
ACAGTCCATCATCCCAGCAC+CGG 0.565927 6.2:-87086285 None:intergenic
GGAATTCGTGAAGAAAGAAA+CGG 0.571607 6.2:+87083991 MS.gene68993:CDS
GAATTGTTGAAGGACGGATA+AGG 0.572423 6.2:+87084068 MS.gene68993:CDS
GATCAAGAATTGTTGAAGGA+CGG 0.572700 6.2:+87084062 MS.gene68993:CDS
GCTCTTTGAAAATTTCACCT+CGG 0.580352 6.2:-87083895 None:intergenic
GAATTCCTCAGGAACGTCAT+CGG 0.580840 6.2:-87083975 None:intergenic
CGAATGTTACAAGGTTTGTG+TGG 0.591062 6.2:+87084197 MS.gene68993:CDS
ACACTGTCATCCTTAATGAA+AGG 0.591158 6.2:-87086722 None:intergenic
TAAGAGAAGAAACCGGTGCT+GGG 0.595539 6.2:+87086273 MS.gene68993:CDS
TTTCAGTGAAAGACTTGGTG+AGG 0.596572 6.2:+87086744 MS.gene68993:CDS
AAAGCCCTTGCCGAAACTGA+AGG 0.599990 6.2:+87086311 MS.gene68993:CDS
GATCACCTTCAGTTTCGGCA+AGG 0.602818 6.2:-87086316 None:intergenic
TCCCGAAACTATTGTGACGA+AGG 0.603689 6.2:+87086583 MS.gene68993:CDS
ATAGACTAACAGCTGAAGGA+AGG 0.605885 6.2:+87086399 MS.gene68993:CDS
GTTCTTACATCCATGACAGT+AGG 0.612810 6.2:+87083827 None:intergenic
AGGTTTGTGTGGTTCAACCT+CGG 0.617131 6.2:+87084208 MS.gene68993:CDS
ATAGATACAAACTGAACCTG+TGG 0.617602 6.2:-87086551 None:intergenic
TTGAGGGAAGAATCTCAAAG+AGG 0.636699 6.2:+87086672 MS.gene68993:CDS
CTAACAGCTGAAGGAAGGAT+CGG 0.637871 6.2:+87086404 MS.gene68993:CDS
TTGCAGGAAATCAATAGTTG+TGG 0.638859 6.2:+87086235 MS.gene68993:intron
CAGTGTTTCAGTGAAAGACT+TGG 0.652429 6.2:+87086739 MS.gene68993:CDS
TTTGGTAGAAGTAAATTGCG+AGG 0.653186 6.2:+87083859 MS.gene68993:CDS
TCACTCTCTTTAAAACATGG+TGG 0.654367 6.2:+87086819 MS.gene68993:CDS
TACATTCACGATGCACACAT+CGG 0.660276 6.2:+87086431 MS.gene68993:CDS
TCAGTGGTAAGAGAAGAAAC+CGG 0.664172 6.2:+87086266 MS.gene68993:CDS
ACGGATAAGGAAGAGACTTG+AGG 0.668138 6.2:+87084081 MS.gene68993:CDS
TGTTACCGATGACGTTCCTG+AGG 0.671950 6.2:+87083970 MS.gene68993:CDS
TGATATAGTCATGCAAGTGG+CGG 0.673490 6.2:+87083925 MS.gene68993:CDS
AACTACTCCAGTGAAAGAGG+AGG 0.687548 6.2:+87084300 MS.gene68993:CDS
TGATGATATAGTCATGCAAG+TGG 0.737408 6.2:+87083922 MS.gene68993:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAGAAATTTTAGAAT+GGG - chr6.2:87086014-87086033 None:intergenic 10.0%
!!! TAATTATAGAAATTTTAGAA+TGG - chr6.2:87086015-87086034 None:intergenic 10.0%
!! AATAAAGTGATTAAGATTAA+TGG - chr6.2:87085550-87085569 None:intergenic 15.0%
!! ACAAAAATTTGTAATTGAAT+TGG + chr6.2:87085951-87085970 MS.gene68993:intron 15.0%
!! ATAAAGTGATTAAGATTAAT+GGG - chr6.2:87085549-87085568 None:intergenic 15.0%
!! CAAGAATAAATTAGATAATT+CGG + chr6.2:87085435-87085454 MS.gene68993:intron 15.0%
!!! GTTATTTGATTATGAAATTT+TGG + chr6.2:87084396-87084415 MS.gene68993:intron 15.0%
!! AGATTTAGATACATTCAAAA+AGG + chr6.2:87084448-87084467 MS.gene68993:intron 20.0%
!! GAAACTTTAAATTCAGTTAA+AGG - chr6.2:87084492-87084511 None:intergenic 20.0%
!! GTTCAAGTAGTAATTTAAAT+CGG - chr6.2:87085685-87085704 None:intergenic 20.0%
!! TATCGCAATATTGAAAATAA+CGG - chr6.2:87085575-87085594 None:intergenic 20.0%
!! TTATGACTTAATTGAACAAA+AGG - chr6.2:87085613-87085632 None:intergenic 20.0%
!! TTCAATCAATAGAATAAACT+AGG - chr6.2:87085141-87085160 None:intergenic 20.0%
!! TTTATATTAAGAGAAGAAAC+CGG + chr6.2:87086161-87086180 MS.gene68993:intron 20.0%
!!! AATTCTTTTAATGATTCCAA+GGG - chr6.2:87085322-87085341 None:intergenic 20.0%
!!! ACAATAAAAAGCATTAAGAA+CGG - chr6.2:87085189-87085208 None:intergenic 20.0%
! AAATTAAGTGAAAGAACTAC+TGG + chr6.2:87085978-87085997 MS.gene68993:intron 25.0%
! ACTTTATCATTCTTGATGTA+GGG - chr6.2:87084127-87084146 None:intergenic 25.0%
! ATAAGAGAGAAAATTGTTGA+GGG + chr6.2:87086656-87086675 MS.gene68993:CDS 25.0%
! ATTAGATCAAGAATTGTTGA+AGG + chr6.2:87084058-87084077 MS.gene68993:CDS 25.0%
! CTTAGTGAATTTGAAGATTA+GGG - chr6.2:87085364-87085383 None:intergenic 25.0%
! GTCTAATTGACCATTTAAAA+AGG + chr6.2:87085781-87085800 MS.gene68993:intron 25.0%
! TAAACCGTACATCAATTTAA+AGG - chr6.2:87085220-87085239 None:intergenic 25.0%
! TAAATAGACACATGCAAAAT+CGG - chr6.2:87084889-87084908 None:intergenic 25.0%
! TATCTATTCCTAGATTACAA+AGG - chr6.2:87085295-87085314 None:intergenic 25.0%
! TTCAAATTCACTAAGGAATT+AGG + chr6.2:87085369-87085388 MS.gene68993:intron 25.0%
!! AATTTTCTCTCTTATGTTCT+CGG - chr6.2:87086651-87086670 None:intergenic 25.0%
!! ACGTAATGTACCTTTTTAAA+TGG - chr6.2:87085794-87085813 None:intergenic 25.0%
!! CTGAATTTAAAGTTTCAAAC+AGG + chr6.2:87084496-87084515 MS.gene68993:intron 25.0%
!! CTGTTACAATATCTAAGATT+GGG + chr6.2:87085855-87085874 MS.gene68993:intron 25.0%
!! GAATTCTTTTAATGATTCCA+AGG - chr6.2:87085323-87085342 None:intergenic 25.0%
!! TCTGTTACAATATCTAAGAT+TGG + chr6.2:87085854-87085873 MS.gene68993:intron 25.0%
!! TTTTGCATGTGTCTATTTAA+AGG + chr6.2:87084890-87084909 MS.gene68993:intron 25.0%
!! TTTTTGTCACTAAGGAATTA+GGG + chr6.2:87085412-87085431 MS.gene68993:intron 25.0%
!!! AAATTTTGGTAATTAGTTCC+TGG + chr6.2:87084410-87084429 MS.gene68993:intron 25.0%
!!! AGGAATTAGGTCTTTATTTT+AGG + chr6.2:87085382-87085401 MS.gene68993:intron 25.0%
!!! CTTAATGCTTTTTATTGTGT+CGG + chr6.2:87085191-87085210 MS.gene68993:intron 25.0%
!!! GTTTAAAGTTTTTGTCACTA+AGG + chr6.2:87085404-87085423 MS.gene68993:intron 25.0%
!!! TAAAAAGTGCCTAATAAACT+AGG - chr6.2:87084612-87084631 None:intergenic 25.0%
!!! TTTTTTGGATCGCATATTTT+GGG + chr6.2:87084822-87084841 MS.gene68993:intron 25.0%
ACTTTCAACACTGGAAAAAT+CGG + chr6.2:87084764-87084783 MS.gene68993:intron 30.0%
AGTTTGAGGAATTCAGAAAT+CGG + chr6.2:87084695-87084714 MS.gene68993:intron 30.0%
ATCATTGAAGGAGTTTAACA+AGG + chr6.2:87085001-87085020 MS.gene68993:intron 30.0%
ATTCTTGATCTAATTAGCTC+TGG - chr6.2:87084052-87084071 None:intergenic 30.0%
CAAAATATGCGATCCAAAAA+AGG - chr6.2:87084823-87084842 None:intergenic 30.0%
CAAGCATACCTTAGAAAAAA+GGG + chr6.2:87086350-87086369 MS.gene68993:CDS 30.0%
CACTTTATCATTCTTGATGT+AGG - chr6.2:87084128-87084147 None:intergenic 30.0%
CATAACAAACATGTTCATCT+AGG - chr6.2:87085117-87085136 None:intergenic 30.0%
CATAAGAGAGAAAATTGTTG+AGG + chr6.2:87086655-87086674 MS.gene68993:CDS 30.0%
CCTAATCTTCAAATTCACTA+AGG + chr6.2:87085362-87085381 MS.gene68993:intron 30.0%
CCTTAGTGAATTTGAAGATT+AGG - chr6.2:87085365-87085384 None:intergenic 30.0%
GAAATCAATAGTTGTGGTTT+CGG + chr6.2:87086241-87086260 MS.gene68993:CDS 30.0%
GAATGATAAAGTGACAGTAA+AGG + chr6.2:87084135-87084154 MS.gene68993:CDS 30.0%
GAGAAAATACGAATGTTACA+AGG + chr6.2:87084188-87084207 MS.gene68993:CDS 30.0%
TAAAGTGACAGTAAAGGATA+TGG + chr6.2:87084141-87084160 MS.gene68993:CDS 30.0%
TAACAACATACTCTACTTGA+GGG - chr6.2:87083955-87083974 None:intergenic 30.0%
TAATCCTACATGTTAACTGA+TGG - chr6.2:87085732-87085751 None:intergenic 30.0%
TCATAGAACTACACTTACTT+TGG - chr6.2:87084358-87084377 None:intergenic 30.0%
TCCCAGAATTACATCAAAAA+TGG - chr6.2:87084646-87084665 None:intergenic 30.0%
TGTGTCTATTTAAAGGAACT+CGG + chr6.2:87084897-87084916 MS.gene68993:intron 30.0%
TTGACACGAAAAAAAGATCA+AGG - chr6.2:87084523-87084542 None:intergenic 30.0%
! ATTTTCTCTCTTATGTTCTC+GGG - chr6.2:87086650-87086669 None:intergenic 30.0%
! GTTTTTGTCACTAAGGAATT+AGG + chr6.2:87085411-87085430 MS.gene68993:intron 30.0%
!! AGGCACTTTTTATGTAATGT+GGG + chr6.2:87084620-87084639 MS.gene68993:intron 30.0%
!! ATTTTTCCAGTGTTGAAAGT+TGG - chr6.2:87084764-87084783 None:intergenic 30.0%
!! TAGGCACTTTTTATGTAATG+TGG + chr6.2:87084619-87084638 MS.gene68993:intron 30.0%
!!! ACTAGGTTATTAGCTTTTCA+TGG + chr6.2:87085490-87085509 MS.gene68993:intron 30.0%
!!! ACTTAGAGATTGCGATTTTT+TGG + chr6.2:87084926-87084945 MS.gene68993:intron 30.0%
!!! CTTTTTTGGATCGCATATTT+TGG + chr6.2:87084821-87084840 MS.gene68993:intron 30.0%
!!! GCCATTTTTGATGTAATTCT+GGG + chr6.2:87084642-87084661 MS.gene68993:intron 30.0%
!!! GTACGGTTTATTTTGTGATA+CGG + chr6.2:87085230-87085249 MS.gene68993:intron 30.0%
!!! TTTATTTTGTGATACGGAAG+TGG + chr6.2:87085236-87085255 MS.gene68993:intron 30.0%
AAAAAGGCAAAACTACACCA+TGG + chr6.2:87084464-87084483 MS.gene68993:intron 35.0%
AAAAGGCAAAACTACACCAT+GGG + chr6.2:87084465-87084484 MS.gene68993:intron 35.0%
AAATTCAGCAGCAAAATCGA+TGG - chr6.2:87084741-87084760 None:intergenic 35.0%
AAATTCAGTTAAAGGACCCA+TGG - chr6.2:87084484-87084503 None:intergenic 35.0%
AACTGAAGGTGATCTTGAAA+AGG + chr6.2:87086325-87086344 MS.gene68993:CDS 35.0%
AAGCAGACAATTGCAACTAT+TGG + chr6.2:87084166-87084185 MS.gene68993:CDS 35.0%
AAGTGAGAAATTCAAGGAGT+TGG + chr6.2:87086496-87086515 MS.gene68993:CDS 35.0%
ACACTGTCATCCTTAATGAA+AGG - chr6.2:87086725-87086744 None:intergenic 35.0%
ACCGTACATCAATTTAAAGG+CGG - chr6.2:87085217-87085236 None:intergenic 35.0%
ATAGATACAAACTGAACCTG+TGG - chr6.2:87086554-87086573 None:intergenic 35.0%
ATTAATGGGAGAAAGATGCT+AGG - chr6.2:87085535-87085554 None:intergenic 35.0%
ATTACGTCTTCTGTTCATCA+AGG + chr6.2:87085807-87085826 MS.gene68993:intron 35.0%
ATTCCTAGATTACAAAGGCA+AGG - chr6.2:87085290-87085309 None:intergenic 35.0%
CAAAAGACCTAGAAACACAT+AGG + chr6.2:87084953-87084972 MS.gene68993:intron 35.0%
CACTTTAATGTTCTCTCCAA+TGG - chr6.2:87086783-87086802 None:intergenic 35.0%
CCTAATAAACTAGGATGACA+GGG - chr6.2:87084603-87084622 None:intergenic 35.0%
GAATTTCCAACTTTCAACAC+TGG + chr6.2:87084755-87084774 MS.gene68993:intron 35.0%
GATCAAGAATTGTTGAAGGA+CGG + chr6.2:87084062-87084081 MS.gene68993:CDS 35.0%
GCAAGCATACCTTAGAAAAA+AGG + chr6.2:87086349-87086368 MS.gene68993:CDS 35.0%
GGAATTCGTGAAGAAAGAAA+CGG + chr6.2:87083991-87084010 MS.gene68993:CDS 35.0%
GTAACAACATACTCTACTTG+AGG - chr6.2:87083956-87083975 None:intergenic 35.0%
GTCATTTCTTCATGTCAAGT+TGG + chr6.2:87084547-87084566 MS.gene68993:intron 35.0%
TAACTAAACCCTCCTTTGTT+GGG + chr6.2:87085081-87085100 MS.gene68993:intron 35.0%
TAGGAATAGATACAAACCCT+TGG + chr6.2:87085303-87085322 MS.gene68993:intron 35.0%
TATAGAGCAGCCTTTCATTA+AGG + chr6.2:87086712-87086731 MS.gene68993:CDS 35.0%
TCGATTCAATAGTTGAGACT+AGG + chr6.2:87085473-87085492 MS.gene68993:intron 35.0%
TGATGATATAGTCATGCAAG+TGG + chr6.2:87083922-87083941 MS.gene68993:CDS 35.0%
TGGAAGAAGTGAGAAATTCA+AGG + chr6.2:87086490-87086509 MS.gene68993:CDS 35.0%
TTAATGGGAGAAAGATGCTA+GGG - chr6.2:87085534-87085553 None:intergenic 35.0%
TTCAAGATCACCTTCAGTTT+CGG - chr6.2:87086324-87086343 None:intergenic 35.0%
TTCCTTCGTCACAATAGTTT+CGG - chr6.2:87086588-87086607 None:intergenic 35.0%
TTGCAGGAAATCAATAGTTG+TGG + chr6.2:87086235-87086254 MS.gene68993:intron 35.0%
TTTGGTAGAAGTAAATTGCG+AGG + chr6.2:87083859-87083878 MS.gene68993:CDS 35.0%
! CTCTTTGAAAATTTCACCTC+GGG - chr6.2:87083897-87083916 None:intergenic 35.0%
! GCTCTTTGAAAATTTCACCT+CGG - chr6.2:87083898-87083917 None:intergenic 35.0%
!! GGTTCACTCTCTTTAAAACA+TGG + chr6.2:87086816-87086835 MS.gene68993:CDS 35.0%
!! TCACTCTCTTTAAAACATGG+TGG + chr6.2:87086819-87086838 MS.gene68993:CDS 35.0%
!! TTAAAGTGCGTCGTTTTGTT+CGG + chr6.2:87086795-87086814 MS.gene68993:CDS 35.0%
!!! ATGAGAGACCCTTTTTTCTA+AGG - chr6.2:87086361-87086380 None:intergenic 35.0%
!!! GGCCATTTTTGATGTAATTC+TGG + chr6.2:87084641-87084660 MS.gene68993:intron 35.0%
AAACACATAGGAGAGCGATT+TGG + chr6.2:87084965-87084984 MS.gene68993:intron 40.0%
AACTAAACCCTCCTTTGTTG+GGG + chr6.2:87085082-87085101 MS.gene68993:intron 40.0%
ACTGTTCAATGTTGTGTTGC+AGG + chr6.2:87086219-87086238 MS.gene68993:intron 40.0%
ATAGACTAACAGCTGAAGGA+AGG + chr6.2:87086399-87086418 MS.gene68993:CDS 40.0%
CACCAACATGATGTCTAGTT+TGG - chr6.2:87086040-87086059 None:intergenic 40.0%
CAGTGTTTCAGTGAAAGACT+TGG + chr6.2:87086739-87086758 MS.gene68993:CDS 40.0%
CCCTGTCATCCTAGTTTATT+AGG + chr6.2:87084600-87084619 MS.gene68993:intron 40.0%
CGAATGTTACAAGGTTTGTG+TGG + chr6.2:87084197-87084216 MS.gene68993:CDS 40.0%
CGATCCAAAAAAGGCAGAAT+CGG - chr6.2:87084814-87084833 None:intergenic 40.0%
CGATGGCTGATTGGAAATAA+CGG - chr6.2:87084724-87084743 None:intergenic 40.0%
CTCACTTCTTCCAACAAAGT+CGG - chr6.2:87086483-87086502 None:intergenic 40.0%
GAATTGTTGAAGGACGGATA+AGG + chr6.2:87084068-87084087 MS.gene68993:CDS 40.0%
GATCCTTGCCTTTGTAATCT+AGG + chr6.2:87085284-87085303 MS.gene68993:intron 40.0%
GCAACTTGGAACATCATTGA+AGG + chr6.2:87084989-87085008 MS.gene68993:intron 40.0%
GCCGCCTTTAAATTGATGTA+CGG + chr6.2:87085213-87085232 MS.gene68993:intron 40.0%
GCCTAATAAACTAGGATGAC+AGG - chr6.2:87084604-87084623 None:intergenic 40.0%
GGAAGAATCTCAAAGAGGTT+AGG + chr6.2:87086677-87086696 MS.gene68993:CDS 40.0%
GGAGGAAAAACACAAGTTTG+AGG + chr6.2:87084681-87084700 MS.gene68993:intron 40.0%
GTAACTAAACCCTCCTTTGT+TGG + chr6.2:87085080-87085099 MS.gene68993:intron 40.0%
TACATTCACGATGCACACAT+CGG + chr6.2:87086431-87086450 MS.gene68993:CDS 40.0%
TACGCCATCAGTTAACATGT+AGG + chr6.2:87085725-87085744 MS.gene68993:intron 40.0%
TCAGTGGTAAGAGAAGAAAC+CGG + chr6.2:87086266-87086285 MS.gene68993:CDS 40.0%
TCCTTCGTCACAATAGTTTC+GGG - chr6.2:87086587-87086606 None:intergenic 40.0%
TCTTAACAAATGCACACTCC+AGG - chr6.2:87084431-87084450 None:intergenic 40.0%
TCTTTCTTCACGAATTCCTC+AGG - chr6.2:87083989-87084008 None:intergenic 40.0%
TGATATAGTCATGCAAGTGG+CGG + chr6.2:87083925-87083944 MS.gene68993:CDS 40.0%
TGCACAAACTGCAGCAAAAA+CGG + chr6.2:87084276-87084295 MS.gene68993:intron 40.0%
TGCCAAACTAGACATCATGT+TGG + chr6.2:87086035-87086054 MS.gene68993:intron 40.0%
TGTCAACGAAAGTCCAATTG+TGG + chr6.2:87085885-87085904 MS.gene68993:intron 40.0%
TTGAGGGAAGAATCTCAAAG+AGG + chr6.2:87086672-87086691 MS.gene68993:CDS 40.0%
! AACTGTGAAACCGACTTTGT+TGG + chr6.2:87086470-87086489 MS.gene68993:CDS 40.0%
! CTTGTGTTTTTCCTCCTTTG+TGG - chr6.2:87084677-87084696 None:intergenic 40.0%
! GACAGTAGGATCAGTACTTT+TGG + chr6.2:87083841-87083860 MS.gene68993:CDS 40.0%
! TCCTTCAGCTGTTAGTCTAT+CGG - chr6.2:87086399-87086418 None:intergenic 40.0%
!! CGCATATTTTGGGCTTAAGT+GGG + chr6.2:87084832-87084851 MS.gene68993:intron 40.0%
!! TCGCATATTTTGGGCTTAAG+TGG + chr6.2:87084831-87084850 MS.gene68993:intron 40.0%
!! TTTCAGTGAAAGACTTGGTG+AGG + chr6.2:87086744-87086763 MS.gene68993:CDS 40.0%
AACTACTCCAGTGAAAGAGG+AGG + chr6.2:87084300-87084319 MS.gene68993:CDS 45.0%
ACGGATAAGGAAGAGACTTG+AGG + chr6.2:87084081-87084100 MS.gene68993:CDS 45.0%
AGGCAAAGTATAGCTGCCAT+TGG + chr6.2:87086764-87086783 MS.gene68993:CDS 45.0%
AGGTTTGTGTGGTTCAACCT+CGG + chr6.2:87084208-87084227 MS.gene68993:CDS 45.0%
ATCACCTTCAGTTTCGGCAA+GGG - chr6.2:87086318-87086337 None:intergenic 45.0%
CAGCAAAATCGATGGCTGAT+TGG - chr6.2:87084733-87084752 None:intergenic 45.0%
CATGCAAAATCGGTTACCGA+TGG - chr6.2:87084879-87084898 None:intergenic 45.0%
CGACTTAAGCAGCAAAATCC+TGG - chr6.2:87084255-87084274 None:intergenic 45.0%
CTAACAGCTGAAGGAAGGAT+CGG + chr6.2:87086404-87086423 MS.gene68993:CDS 45.0%
CTGGAAAAATCGGTTACCGA+TGG + chr6.2:87084774-87084793 MS.gene68993:intron 45.0%
GAATTCCTCAGGAACGTCAT+CGG - chr6.2:87083978-87083997 None:intergenic 45.0%
GGGTTTGGAAAAGAAAAGCC+AGG + chr6.2:87084234-87084253 MS.gene68993:intron 45.0%
GGTAACTACTCCAGTGAAAG+AGG + chr6.2:87084297-87084316 MS.gene68993:CDS 45.0%
TAAGAGAAGAAACCGGTGCT+GGG + chr6.2:87086168-87086187 MS.gene68993:intron 45.0%
TACTCATCCCCAACAAAGGA+GGG - chr6.2:87085092-87085111 None:intergenic 45.0%
TCCCGAAACTATTGTGACGA+AGG + chr6.2:87086583-87086602 MS.gene68993:CDS 45.0%
TCCGATAGACTAACAGCTGA+AGG + chr6.2:87086395-87086414 MS.gene68993:CDS 45.0%
TCGCTCTCCTATGTGTTTCT+AGG - chr6.2:87084963-87084982 None:intergenic 45.0%
TTAAGAGAAGAAACCGGTGC+TGG + chr6.2:87086167-87086186 MS.gene68993:intron 45.0%
TTGGACTTTCGTTGACAGCA+AGG - chr6.2:87085882-87085901 None:intergenic 45.0%
! AGTCCAATTGTGGTACTGAG+TGG + chr6.2:87085895-87085914 MS.gene68993:intron 45.0%
! AGTTACCGATTGGATGCCAT+CGG + chr6.2:87084860-87084879 MS.gene68993:intron 45.0%
! GAGGAAAATTTTGTCTCCCG+AGG + chr6.2:87083878-87083897 MS.gene68993:CDS 45.0%
!!! GCTACCGATTCTGCCTTTTT+TGG + chr6.2:87084807-87084826 MS.gene68993:intron 45.0%
AAAGCCCTTGCCGAAACTGA+AGG + chr6.2:87086311-87086330 MS.gene68993:CDS 50.0%
AGTTGTGGTTTCGGCTTCAG+TGG + chr6.2:87086250-87086269 MS.gene68993:CDS 50.0%
CAATCCTCGAGTTCGACACT+CGG + chr6.2:87085654-87085673 MS.gene68993:intron 50.0%
CTACTCATCCCCAACAAAGG+AGG - chr6.2:87085093-87085112 None:intergenic 50.0%
GATCACCTTCAGTTTCGGCA+AGG - chr6.2:87086319-87086338 None:intergenic 50.0%
GGTCTACTCATCCCCAACAA+AGG - chr6.2:87085096-87085115 None:intergenic 50.0%
GGTTACCGATGGCATCCAAT+CGG - chr6.2:87084868-87084887 None:intergenic 50.0%
GTAAGAGAAGAAACCGGTGC+TGG + chr6.2:87086272-87086291 MS.gene68993:CDS 50.0%
GTGGGCAATCAGTTACCGAT+TGG + chr6.2:87084850-87084869 MS.gene68993:intron 50.0%
TCGCCACTCAGTACCACAAT+TGG - chr6.2:87085901-87085920 None:intergenic 50.0%
TGTTACCGATGACGTTCCTG+AGG + chr6.2:87083970-87083989 MS.gene68993:CDS 50.0%
TGTTCTCGGGTTTCGAAGCA+AGG - chr6.2:87086637-87086656 None:intergenic 50.0%
! GAGAGCGATTTGGAGCAACT+TGG + chr6.2:87084975-87084994 MS.gene68993:intron 50.0%
! TCAAATGAGCTGTGCTGCTG+TGG - chr6.2:87086846-87086865 None:intergenic 50.0%
! TCTTTTCCAAACCCTCACCG+AGG - chr6.2:87084228-87084247 None:intergenic 50.0%
ACAGTCCATCATCCCAGCAC+CGG - chr6.2:87086183-87086202 None:intergenic 55.0%
CAGAATCGGTAGCCGATGCA+AGG - chr6.2:87084800-87084819 None:intergenic 55.0%
CTGGGAGCTAGAAGCCACAA+AGG + chr6.2:87084660-87084679 MS.gene68993:intron 55.0%
GGAGCTAGAAGCCACAAAGG+AGG + chr6.2:87084663-87084682 MS.gene68993:intron 55.0%
GTGTGGTTCAACCTCGGTGA+GGG + chr6.2:87084214-87084233 MS.gene68993:intron 55.0%
GTTCAACCTCGGTGAGGGTT+TGG + chr6.2:87084219-87084238 MS.gene68993:intron 55.0%
TGTGTGGTTCAACCTCGGTG+AGG + chr6.2:87084213-87084232 MS.gene68993:intron 55.0%
! AGAAACCGGTGCTGGGATGA+TGG + chr6.2:87086175-87086194 MS.gene68993:intron 55.0%
! GCAAGTTGCTGCTTGTCCAC+AGG + chr6.2:87086535-87086554 MS.gene68993:CDS 55.0%
! GGTTACCGATGGCCTTGCAT+CGG + chr6.2:87084785-87084804 MS.gene68993:intron 55.0%
!! AAGACCGAGTGTCGAACTCG+AGG - chr6.2:87085661-87085680 None:intergenic 55.0%
GCAGCAGCCTCCTCTTTCAC+TGG - chr6.2:87084310-87084329 None:intergenic 60.0%
GGTAGCCGATGCAAGGCCAT+CGG - chr6.2:87084793-87084812 None:intergenic 60.0%
TGCTGCTGCTGCAGAAGCGA+AGG + chr6.2:87084324-87084343 MS.gene68993:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 87083839 87086865 87083839 ID=MS.gene68993
chr6.2 mRNA 87083839 87086865 87083839 ID=MS.gene68993.t1;Parent=MS.gene68993
chr6.2 exon 87083839 87084229 87083839 ID=MS.gene68993.t1.exon1;Parent=MS.gene68993.t1
chr6.2 CDS 87083839 87084229 87083839 ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1
chr6.2 exon 87084290 87084359 87084290 ID=MS.gene68993.t1.exon2;Parent=MS.gene68993.t1
chr6.2 CDS 87084290 87084359 87084290 ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1
chr6.2 exon 87086241 87086865 87086241 ID=MS.gene68993.t1.exon3;Parent=MS.gene68993.t1
chr6.2 CDS 87086241 87086865 87086241 ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1
Gene Sequence

>MS.gene68993

ATGACAGTAGGATCAGTACTTTTGGTAGAAGTAAATTGCGAGGAAAATTTTGTCTCCCGAGGTGAAATTTTCAAAGAGCTTGTTGATGATATAGTCATGCAAGTGGCGGCATGCCCTCAAGTAGAGTATGTTGTTACCGATGACGTTCCTGAGGAATTCGTGAAGAAAGAAACGGAGATAGAAATGCAAAAAGAAGATCTTGCATCAAAACCAGAGCTAATTAGATCAAGAATTGTTGAAGGACGGATAAGGAAGAGACTTGAGGATTTAGTGTTGCTTGAGCAGCCCTACATCAAGAATGATAAAGTGACAGTAAAGGATATGGTTAAGCAGACAATTGCAACTATTGGAGAAAATACGAATGTTACAAGGTTTGTGTGGTTCAACCTCGGTGAGGGTTTGGAAAAGAAAAGCCAGGATTTTGCTGCTTAAGTCGCTGCACAAACTGCAGCAAAAACGGTAACTACTCCAGTGAAAGAGGAGGCTGCTGCTGCTGCAGAAGCGAAGGAGACTGAACCAAAGTAAGTGTAGTTCTATGAATTTCTACTTGTTATTGAGTTATTTGATTATGAAATTTTGGTAATTAGTTCCTGGAGTGTGCATTTGTTAAGATTTAGATACATTCAAAAAGGCAAAACTACACCATGGGTCCTTTAACTGAATTTAAAGTTTCAAACAGGTCCTTGATCTTTTTTTCGTGTCAATTTAGTCATTTCTTCATGTCAAGTTGGTTCTTTTGTTTAAAAACGTTAATGATGACACCCTGTCATCCTAGTTTATTAGGCACTTTTTATGTAATGTGGGCCATTTTTGATGTAATTCTGGGAGCTAGAAGCCACAAAGGAGGAAAAACACAAGTTTGAGGAATTCAGAAATCGGTCACCGTTATTTCCAATCAGCCATCGATTTTGCTGCTGAATTTCCAACTTTCAACACTGGAAAAATCGGTTACCGATGGCCTTGCATCGGCTACCGATTCTGCCTTTTTTGGATCGCATATTTTGGGCTTAAGTGGGCAATCAGTTACCGATTGGATGCCATCGGTAACCGATTTTGCATGTGTCTATTTAAAGGAACTCGGTCTCAGACTTAGAGATTGCGATTTTTTGGAGATCAAAAGACCTAGAAACACATAGGAGAGCGATTTGGAGCAACTTGGAACATCATTGAAGGAGTTTAACAAGGTTTATTCTTGAATTCATCTTGTAATTCTTCTTCTATTGTTTATTGCTTGATTATGTGTAACTAAACCCTCCTTTGTTGGGGATGAGTAGACCTAGATGAACATGTTTGTTATGACCTAGTTTATTCTATTGATTGAAATTCATATGATTGTTTCTCTTATTTCCGTTCTTAATGCTTTTTATTGTGTCGGCCGCCTTTAAATTGATGTACGGTTTATTTTGTGATACGGAAGTGGAATTGATAAACGCTTTGAAATAAGAGATCCTTGCCTTTGTAATCTAGGAATAGATACAAACCCTTGGAATCATTAAAAGAATTCTTGTTCGTTAATGCTTAACCCTAATCTTCAAATTCACTAAGGAATTAGGTCTTTATTTTAGGTTTAAAGTTTTTGTCACTAAGGAATTAGGGCAAGAATAAATTAGATAATTCGGTAACAATCATATGAGTCGATTCAATAGTTGAGACTAGGTTATTAGCTTTTCATGGTCATCTAGCGAAACTCATCCCTAGCATCTTTCTCCCATTAATCTTAATCACTTTATTTTCCGTTATTTTCAATATTGCGATAAAACAAACAACTTAACCTTTTGTTCAATTAAGTCATAAATACAATTCAACAGTATAACGCAATCCTCGAGTTCGACACTCGGTCTTACCGATTTAAATTACTACTTGAACGATTTCGTACACTTGCGAGATACGCCATCAGTTAACATGTAGGATTAAACTTCATTTTTAATGTATGTTATCAAAAGTCTAATTGACCATTTAAAAAGGTACATTACGTCTTCTGTTCATCAAGGTTACATCTAAAATATATCATATTGTCTGTTACAATATCTAAGATTGGGACCTTGCTGTCAACGAAAGTCCAATTGTGGTACTGAGTGGCGAATTTATTTTTATAGTATTGATTTATTATTTACAAAAATTTGTAATTGAATTGGTCTAAAATTAAGTGAAAGAACTACTGGTGTAGTTTCTCCCATTCTAAAATTTCTATAATTATGCCAAACTAGACATCATGTTGGTGATTGCTTTAACTTTATGTATTAATTAGATTTGTTGTGTGCTAAAACGTTGAAACAGCGACTTGCATTTTCTCATTTTTCTATTTTTTTCATTCACTTCAAATTTATATTAAGAGAAGAAACCGGTGCTGGGATGATGGACTGTAACTCTTAAACTGTTTACTGTTCAATGTTGTGTTGCAGGAAATCAATAGTTGTGGTTTCGGCTTCAGTGGTAAGAGAAGAAACCGGTGCTGGGATGATGGACTGTAAGAAAGCCCTTGCCGAAACTGAAGGTGATCTTGAAAAGGCGCAAGCATACCTTAGAAAAAAGGGTCTCTCATCAGCTGACAAGAAATCCGATAGACTAACAGCTGAAGGAAGGATCGGTAAATACATTCACGATGCACACATCGGTGTTCTAATCGAAGTGAACTGTGAAACCGACTTTGTTGGAAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCACAGGTTCAGTTTGTATCTATTGAAGATATTCCCGAAACTATTGTGACGAAGGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGCTTCGAAACCCGAGAACATAAGAGAGAAAATTGTTGAGGGAAGAATCTCAAAGAGGTTAGGAGATCTTGCTCTTATAGAGCAGCCTTTCATTAAGGATGACAGTGTTTCAGTGAAAGACTTGGTGAGGCAAAGTATAGCTGCCATTGGAGAGAACATTAAAGTGCGTCGTTTTGTTCGGTTCACTCTCTTTAAAACATGGTGGACCACAGCAGCACAGCTCATTTGA

Protein sequence

>MS.gene68993.t1

MTVGSVLLVEVNCEENFVSRGEIFKELVDDIVMQVAACPQVEYVVTDDVPEEFVKKETEIEMQKEDLASKPELIRSRIVEGRIRKRLEDLVLLEQPYIKNDKVTVKDMVKQTIATIGENTNVTRFVWFNLAKTVTTPVKEEAAAAAEAKETEPKKSIVVVSASVVREETGAGMMDCKKALAETEGDLEKAQAYLRKKGLSSADKKSDRLTAEGRIGKYIHDAHIGVLIEVNCETDFVGRSEKFKELVDDLAMQVAACPQVQFVSIEDIPETIVTKEKELEMQREDLASKPENIREKIVEGRISKRLGDLALIEQPFIKDDSVSVKDLVRQSIAAIGENIKVRRFVRFTLFKTWWTTAAQLI