Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68993.t1 | XP_003620654.1 | 81 | 368 | 48 | 2 | 7 | 352 | 678 | 1045 | 2.00E-148 | 535.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68993.t1 | B7K735 | 64.0 | 186 | 66 | 1 | 165 | 349 | 12 | 197 | 7.7e-64 | 245.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68993.t1 | G7KPU0 | 81.0 | 368 | 48 | 2 | 7 | 352 | 678 | 1045 | 1.5e-148 | 535.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050026 | MS.gene68993 | 0.813383 | 2.63E-51 | -1.69E-46 |
MS.gene050442 | MS.gene68993 | 0.802908 | 4.49E-49 | -1.69E-46 |
MS.gene050750 | MS.gene68993 | 0.8246 | 7.39E-54 | -1.69E-46 |
MS.gene050787 | MS.gene68993 | 0.820451 | 6.81E-53 | -1.69E-46 |
MS.gene050953 | MS.gene68993 | 0.814036 | 1.89E-51 | -1.69E-46 |
MS.gene051265 | MS.gene68993 | 0.801872 | 7.34E-49 | -1.69E-46 |
MS.gene052190 | MS.gene68993 | 0.804291 | 2.32E-49 | -1.69E-46 |
MS.gene052519 | MS.gene68993 | 0.802361 | 5.82E-49 | -1.69E-46 |
MS.gene053221 | MS.gene68993 | 0.832108 | 1.14E-55 | -1.69E-46 |
MS.gene054236 | MS.gene68993 | 0.817546 | 3.12E-52 | -1.69E-46 |
MS.gene054291 | MS.gene68993 | -0.823173 | 1.60E-53 | -1.69E-46 |
MS.gene054405 | MS.gene68993 | 0.813755 | 2.18E-51 | -1.69E-46 |
MS.gene054467 | MS.gene68993 | 0.818971 | 1.48E-52 | -1.69E-46 |
MS.gene054468 | MS.gene68993 | 0.807159 | 5.79E-50 | -1.69E-46 |
MS.gene054559 | MS.gene68993 | 0.831731 | 1.41E-55 | -1.69E-46 |
MS.gene054775 | MS.gene68993 | 0.815291 | 9.97E-52 | -1.69E-46 |
MS.gene054801 | MS.gene68993 | 0.800286 | 1.55E-48 | -1.69E-46 |
MS.gene055228 | MS.gene68993 | 0.801245 | 9.86E-49 | -1.69E-46 |
MS.gene055356 | MS.gene68993 | 0.820799 | 5.67E-53 | -1.69E-46 |
MS.gene055357 | MS.gene68993 | 0.843085 | 1.74E-58 | -1.69E-46 |
MS.gene055358 | MS.gene68993 | 0.811581 | 6.52E-51 | -1.69E-46 |
MS.gene057021 | MS.gene68993 | 0.8142 | 1.74E-51 | -1.69E-46 |
MS.gene057414 | MS.gene68993 | 0.804182 | 2.44E-49 | -1.69E-46 |
MS.gene058625 | MS.gene68993 | 0.803732 | 3.03E-49 | -1.69E-46 |
MS.gene059272 | MS.gene68993 | 0.811619 | 6.40E-51 | -1.69E-46 |
MS.gene059601 | MS.gene68993 | 0.807215 | 5.64E-50 | -1.69E-46 |
MS.gene059625 | MS.gene68993 | 0.801701 | 7.95E-49 | -1.69E-46 |
MS.gene060137 | MS.gene68993 | -0.838867 | 2.23E-57 | -1.69E-46 |
MS.gene060322 | MS.gene68993 | 0.804773 | 1.84E-49 | -1.69E-46 |
MS.gene061040 | MS.gene68993 | -0.804933 | 1.70E-49 | -1.69E-46 |
MS.gene061114 | MS.gene68993 | -0.822839 | 1.91E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68993.t1 | MTR_6g088270 | 84.824 | 369 | 32 | 3 | 7 | 352 | 678 | 1045 | 0.0 | 597 |
MS.gene68993.t1 | MTR_6g088270 | 72.973 | 185 | 50 | 0 | 165 | 349 | 617 | 801 | 2.09e-89 | 290 |
MS.gene68993.t1 | MTR_6g088270 | 66.406 | 128 | 43 | 0 | 7 | 134 | 919 | 1046 | 3.67e-50 | 180 |
MS.gene68993.t1 | MTR_6g087300 | 50.986 | 355 | 71 | 6 | 7 | 333 | 78 | 357 | 1.95e-93 | 283 |
MS.gene68993.t1 | MTR_6g087300 | 42.105 | 152 | 42 | 3 | 198 | 349 | 50 | 155 | 2.90e-26 | 108 |
MS.gene68993.t1 | MTR_2g039780 | 74.522 | 157 | 24 | 3 | 193 | 348 | 62 | 203 | 4.49e-69 | 216 |
MS.gene68993.t1 | MTR_2g039780 | 53.571 | 140 | 46 | 4 | 7 | 145 | 95 | 216 | 7.72e-36 | 130 |
MS.gene68993.t1 | MTR_6g084360 | 57.589 | 224 | 58 | 2 | 137 | 352 | 914 | 1108 | 4.00e-65 | 223 |
MS.gene68993.t1 | MTR_6g084360 | 48.438 | 128 | 37 | 1 | 7 | 134 | 1011 | 1109 | 1.79e-27 | 114 |
MS.gene68993.t1 | MTR_6g088240 | 60.000 | 185 | 63 | 5 | 174 | 349 | 1 | 183 | 2.46e-56 | 182 |
MS.gene68993.t1 | MTR_6g088240 | 58.511 | 94 | 39 | 0 | 37 | 130 | 90 | 183 | 3.78e-31 | 116 |
MS.gene68993.t1 | MTR_0428s0020 | 54.639 | 194 | 30 | 4 | 154 | 344 | 38 | 176 | 2.02e-49 | 166 |
MS.gene68993.t1 | MTR_0428s0020 | 32.571 | 175 | 63 | 4 | 11 | 185 | 103 | 222 | 1.45e-15 | 75.5 |
MS.gene68993.t1 | MTR_6g027070 | 59.155 | 142 | 39 | 2 | 165 | 306 | 21 | 143 | 1.89e-46 | 155 |
MS.gene68993.t1 | MTR_6g027070 | 83.607 | 61 | 10 | 0 | 27 | 87 | 83 | 143 | 4.59e-25 | 99.8 |
MS.gene68993.t1 | MTR_2g039790 | 72.973 | 111 | 14 | 2 | 154 | 261 | 15 | 112 | 2.69e-44 | 150 |
MS.gene68993.t1 | MTR_6g488290 | 53.039 | 181 | 27 | 4 | 154 | 331 | 38 | 163 | 2.05e-43 | 149 |
MS.gene68993.t1 | MTR_6g088250 | 78.409 | 88 | 16 | 1 | 154 | 238 | 1255 | 1342 | 3.61e-33 | 131 |
MS.gene68993.t1 | MTR_6g087200 | 73.611 | 72 | 9 | 1 | 8 | 79 | 1043 | 1104 | 5.79e-23 | 100 |
MS.gene68993.t1 | MTR_6g087200 | 53.086 | 81 | 28 | 1 | 218 | 298 | 1034 | 1104 | 1.09e-19 | 91.3 |
MS.gene68993.t1 | MTR_6g066260 | 49.474 | 95 | 48 | 0 | 185 | 279 | 3 | 97 | 1.20e-22 | 91.7 |
MS.gene68993.t1 | MTR_6g066260 | 81.481 | 54 | 10 | 0 | 7 | 60 | 44 | 97 | 1.22e-21 | 88.6 |
MS.gene68993.t1 | MTR_6g003970 | 46.067 | 89 | 47 | 1 | 165 | 253 | 35 | 122 | 1.85e-14 | 73.9 |
MS.gene68993.t1 | MTR_6g087190 | 71.795 | 39 | 11 | 0 | 205 | 243 | 15 | 53 | 1.41e-12 | 62.8 |
MS.gene68993.t1 | MTR_6g081090 | 82.051 | 39 | 4 | 1 | 154 | 189 | 5 | 43 | 4.98e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68993.t1 | AT4G29060 | 71.271 | 362 | 85 | 2 | 7 | 349 | 588 | 949 | 1.74e-167 | 492 |
MS.gene68993.t1 | AT4G29060 | 69.524 | 210 | 61 | 1 | 143 | 349 | 502 | 711 | 4.50e-92 | 295 |
MS.gene68993.t1 | AT4G29060 | 65.600 | 125 | 43 | 0 | 7 | 131 | 826 | 950 | 1.08e-46 | 170 |
MS.gene68993.t1 | AT4G29060 | 70.952 | 210 | 52 | 2 | 143 | 349 | 502 | 705 | 2.08e-94 | 296 |
MS.gene68993.t1 | AT4G29060 | 64.800 | 125 | 38 | 1 | 7 | 131 | 588 | 706 | 1.02e-44 | 163 |
MS.gene68993.t1 | AT4G11120 | 47.727 | 88 | 43 | 2 | 165 | 252 | 81 | 165 | 1.91e-12 | 68.2 |
Find 72 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCTTCGTCACAATAGTTT+CGG | 0.269335 | 6.2:-87086585 | None:intergenic |
TATAGAGCAGCCTTTCATTA+AGG | 0.293654 | 6.2:+87086712 | MS.gene68993:CDS |
GAAATCAATAGTTGTGGTTT+CGG | 0.340566 | 6.2:+87086241 | MS.gene68993:CDS |
TTCAAGATCACCTTCAGTTT+CGG | 0.351241 | 6.2:-87086321 | None:intergenic |
TCCTTCGTCACAATAGTTTC+GGG | 0.358591 | 6.2:-87086584 | None:intergenic |
GACAGTAGGATCAGTACTTT+TGG | 0.362449 | 6.2:+87083841 | MS.gene68993:CDS |
CACTTTATCATTCTTGATGT+AGG | 0.372974 | 6.2:-87084125 | None:intergenic |
AAGCAGACAATTGCAACTAT+TGG | 0.386183 | 6.2:+87084166 | MS.gene68993:CDS |
TAAAGTGACAGTAAAGGATA+TGG | 0.403790 | 6.2:+87084141 | MS.gene68993:CDS |
CTCTTTGAAAATTTCACCTC+GGG | 0.404855 | 6.2:-87083894 | None:intergenic |
ACTTTATCATTCTTGATGTA+GGG | 0.407592 | 6.2:-87084124 | None:intergenic |
TCCTTCAGCTGTTAGTCTAT+CGG | 0.432405 | 6.2:-87086396 | None:intergenic |
TGCTGCTGCTGCAGAAGCGA+AGG | 0.440220 | 6.2:+87084324 | MS.gene68993:CDS |
ATTCTTGATCTAATTAGCTC+TGG | 0.440910 | 6.2:-87084049 | None:intergenic |
GGAAGAATCTCAAAGAGGTT+AGG | 0.441763 | 6.2:+87086677 | MS.gene68993:CDS |
TCTTTCTTCACGAATTCCTC+AGG | 0.445506 | 6.2:-87083986 | None:intergenic |
TGGAAGAAGTGAGAAATTCA+AGG | 0.470199 | 6.2:+87086490 | MS.gene68993:CDS |
AGAAACCGGTGCTGGGATGA+TGG | 0.476329 | 6.2:+87086280 | MS.gene68993:CDS |
ATTAGATCAAGAATTGTTGA+AGG | 0.483097 | 6.2:+87084058 | MS.gene68993:CDS |
AAGTGAGAAATTCAAGGAGT+TGG | 0.486954 | 6.2:+87086496 | MS.gene68993:CDS |
CACTTTAATGTTCTCTCCAA+TGG | 0.489563 | 6.2:-87086780 | None:intergenic |
ATAAGAGAGAAAATTGTTGA+GGG | 0.490179 | 6.2:+87086656 | MS.gene68993:CDS |
GCAGCAGCCTCCTCTTTCAC+TGG | 0.493343 | 6.2:-87084307 | None:intergenic |
GCAAGTTGCTGCTTGTCCAC+AGG | 0.499547 | 6.2:+87086535 | MS.gene68993:CDS |
CTCACTTCTTCCAACAAAGT+CGG | 0.500059 | 6.2:-87086480 | None:intergenic |
AACTGTGAAACCGACTTTGT+TGG | 0.501257 | 6.2:+87086470 | MS.gene68993:CDS |
AACTGAAGGTGATCTTGAAA+AGG | 0.505949 | 6.2:+87086325 | MS.gene68993:CDS |
TGTTCTCGGGTTTCGAAGCA+AGG | 0.510741 | 6.2:-87086634 | None:intergenic |
TCAAATGAGCTGTGCTGCTG+TGG | 0.512981 | 6.2:-87086843 | None:intergenic |
ATCACCTTCAGTTTCGGCAA+GGG | 0.513216 | 6.2:-87086315 | None:intergenic |
CATAAGAGAGAAAATTGTTG+AGG | 0.519674 | 6.2:+87086655 | MS.gene68993:CDS |
GAGAAAATACGAATGTTACA+AGG | 0.530407 | 6.2:+87084188 | MS.gene68993:CDS |
GTAAGAGAAGAAACCGGTGC+TGG | 0.531242 | 6.2:+87086272 | MS.gene68993:CDS |
GGTAACTACTCCAGTGAAAG+AGG | 0.540209 | 6.2:+87084297 | MS.gene68993:CDS |
AGTTGTGGTTTCGGCTTCAG+TGG | 0.543544 | 6.2:+87086250 | MS.gene68993:CDS |
AAGTACTGATCCTACTGTCA+TGG | 0.546305 | 6.2:-87083837 | None:intergenic |
TAACAACATACTCTACTTGA+GGG | 0.551546 | 6.2:-87083952 | None:intergenic |
AGGCAAAGTATAGCTGCCAT+TGG | 0.552004 | 6.2:+87086764 | MS.gene68993:CDS |
TCCGATAGACTAACAGCTGA+AGG | 0.552132 | 6.2:+87086395 | MS.gene68993:CDS |
GTAACAACATACTCTACTTG+AGG | 0.555265 | 6.2:-87083953 | None:intergenic |
GAATGATAAAGTGACAGTAA+AGG | 0.564402 | 6.2:+87084135 | MS.gene68993:CDS |
GGTTCACTCTCTTTAAAACA+TGG | 0.564855 | 6.2:+87086816 | MS.gene68993:CDS |
ACAGTCCATCATCCCAGCAC+CGG | 0.565927 | 6.2:-87086285 | None:intergenic |
GGAATTCGTGAAGAAAGAAA+CGG | 0.571607 | 6.2:+87083991 | MS.gene68993:CDS |
GAATTGTTGAAGGACGGATA+AGG | 0.572423 | 6.2:+87084068 | MS.gene68993:CDS |
GATCAAGAATTGTTGAAGGA+CGG | 0.572700 | 6.2:+87084062 | MS.gene68993:CDS |
GCTCTTTGAAAATTTCACCT+CGG | 0.580352 | 6.2:-87083895 | None:intergenic |
GAATTCCTCAGGAACGTCAT+CGG | 0.580840 | 6.2:-87083975 | None:intergenic |
CGAATGTTACAAGGTTTGTG+TGG | 0.591062 | 6.2:+87084197 | MS.gene68993:CDS |
ACACTGTCATCCTTAATGAA+AGG | 0.591158 | 6.2:-87086722 | None:intergenic |
TAAGAGAAGAAACCGGTGCT+GGG | 0.595539 | 6.2:+87086273 | MS.gene68993:CDS |
TTTCAGTGAAAGACTTGGTG+AGG | 0.596572 | 6.2:+87086744 | MS.gene68993:CDS |
AAAGCCCTTGCCGAAACTGA+AGG | 0.599990 | 6.2:+87086311 | MS.gene68993:CDS |
GATCACCTTCAGTTTCGGCA+AGG | 0.602818 | 6.2:-87086316 | None:intergenic |
TCCCGAAACTATTGTGACGA+AGG | 0.603689 | 6.2:+87086583 | MS.gene68993:CDS |
ATAGACTAACAGCTGAAGGA+AGG | 0.605885 | 6.2:+87086399 | MS.gene68993:CDS |
GTTCTTACATCCATGACAGT+AGG | 0.612810 | 6.2:+87083827 | None:intergenic |
AGGTTTGTGTGGTTCAACCT+CGG | 0.617131 | 6.2:+87084208 | MS.gene68993:CDS |
ATAGATACAAACTGAACCTG+TGG | 0.617602 | 6.2:-87086551 | None:intergenic |
TTGAGGGAAGAATCTCAAAG+AGG | 0.636699 | 6.2:+87086672 | MS.gene68993:CDS |
CTAACAGCTGAAGGAAGGAT+CGG | 0.637871 | 6.2:+87086404 | MS.gene68993:CDS |
TTGCAGGAAATCAATAGTTG+TGG | 0.638859 | 6.2:+87086235 | MS.gene68993:intron |
CAGTGTTTCAGTGAAAGACT+TGG | 0.652429 | 6.2:+87086739 | MS.gene68993:CDS |
TTTGGTAGAAGTAAATTGCG+AGG | 0.653186 | 6.2:+87083859 | MS.gene68993:CDS |
TCACTCTCTTTAAAACATGG+TGG | 0.654367 | 6.2:+87086819 | MS.gene68993:CDS |
TACATTCACGATGCACACAT+CGG | 0.660276 | 6.2:+87086431 | MS.gene68993:CDS |
TCAGTGGTAAGAGAAGAAAC+CGG | 0.664172 | 6.2:+87086266 | MS.gene68993:CDS |
ACGGATAAGGAAGAGACTTG+AGG | 0.668138 | 6.2:+87084081 | MS.gene68993:CDS |
TGTTACCGATGACGTTCCTG+AGG | 0.671950 | 6.2:+87083970 | MS.gene68993:CDS |
TGATATAGTCATGCAAGTGG+CGG | 0.673490 | 6.2:+87083925 | MS.gene68993:CDS |
AACTACTCCAGTGAAAGAGG+AGG | 0.687548 | 6.2:+87084300 | MS.gene68993:CDS |
TGATGATATAGTCATGCAAG+TGG | 0.737408 | 6.2:+87083922 | MS.gene68993:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATAGAAATTTTAGAAT+GGG | - | chr6.2:87086014-87086033 | None:intergenic | 10.0% |
!!! | TAATTATAGAAATTTTAGAA+TGG | - | chr6.2:87086015-87086034 | None:intergenic | 10.0% |
!! | AATAAAGTGATTAAGATTAA+TGG | - | chr6.2:87085550-87085569 | None:intergenic | 15.0% |
!! | ACAAAAATTTGTAATTGAAT+TGG | + | chr6.2:87085951-87085970 | MS.gene68993:intron | 15.0% |
!! | ATAAAGTGATTAAGATTAAT+GGG | - | chr6.2:87085549-87085568 | None:intergenic | 15.0% |
!! | CAAGAATAAATTAGATAATT+CGG | + | chr6.2:87085435-87085454 | MS.gene68993:intron | 15.0% |
!!! | GTTATTTGATTATGAAATTT+TGG | + | chr6.2:87084396-87084415 | MS.gene68993:intron | 15.0% |
!! | AGATTTAGATACATTCAAAA+AGG | + | chr6.2:87084448-87084467 | MS.gene68993:intron | 20.0% |
!! | GAAACTTTAAATTCAGTTAA+AGG | - | chr6.2:87084492-87084511 | None:intergenic | 20.0% |
!! | GTTCAAGTAGTAATTTAAAT+CGG | - | chr6.2:87085685-87085704 | None:intergenic | 20.0% |
!! | TATCGCAATATTGAAAATAA+CGG | - | chr6.2:87085575-87085594 | None:intergenic | 20.0% |
!! | TTATGACTTAATTGAACAAA+AGG | - | chr6.2:87085613-87085632 | None:intergenic | 20.0% |
!! | TTCAATCAATAGAATAAACT+AGG | - | chr6.2:87085141-87085160 | None:intergenic | 20.0% |
!! | TTTATATTAAGAGAAGAAAC+CGG | + | chr6.2:87086161-87086180 | MS.gene68993:intron | 20.0% |
!!! | AATTCTTTTAATGATTCCAA+GGG | - | chr6.2:87085322-87085341 | None:intergenic | 20.0% |
!!! | ACAATAAAAAGCATTAAGAA+CGG | - | chr6.2:87085189-87085208 | None:intergenic | 20.0% |
! | AAATTAAGTGAAAGAACTAC+TGG | + | chr6.2:87085978-87085997 | MS.gene68993:intron | 25.0% |
! | ACTTTATCATTCTTGATGTA+GGG | - | chr6.2:87084127-87084146 | None:intergenic | 25.0% |
! | ATAAGAGAGAAAATTGTTGA+GGG | + | chr6.2:87086656-87086675 | MS.gene68993:CDS | 25.0% |
! | ATTAGATCAAGAATTGTTGA+AGG | + | chr6.2:87084058-87084077 | MS.gene68993:CDS | 25.0% |
! | CTTAGTGAATTTGAAGATTA+GGG | - | chr6.2:87085364-87085383 | None:intergenic | 25.0% |
! | GTCTAATTGACCATTTAAAA+AGG | + | chr6.2:87085781-87085800 | MS.gene68993:intron | 25.0% |
! | TAAACCGTACATCAATTTAA+AGG | - | chr6.2:87085220-87085239 | None:intergenic | 25.0% |
! | TAAATAGACACATGCAAAAT+CGG | - | chr6.2:87084889-87084908 | None:intergenic | 25.0% |
! | TATCTATTCCTAGATTACAA+AGG | - | chr6.2:87085295-87085314 | None:intergenic | 25.0% |
! | TTCAAATTCACTAAGGAATT+AGG | + | chr6.2:87085369-87085388 | MS.gene68993:intron | 25.0% |
!! | AATTTTCTCTCTTATGTTCT+CGG | - | chr6.2:87086651-87086670 | None:intergenic | 25.0% |
!! | ACGTAATGTACCTTTTTAAA+TGG | - | chr6.2:87085794-87085813 | None:intergenic | 25.0% |
!! | CTGAATTTAAAGTTTCAAAC+AGG | + | chr6.2:87084496-87084515 | MS.gene68993:intron | 25.0% |
!! | CTGTTACAATATCTAAGATT+GGG | + | chr6.2:87085855-87085874 | MS.gene68993:intron | 25.0% |
!! | GAATTCTTTTAATGATTCCA+AGG | - | chr6.2:87085323-87085342 | None:intergenic | 25.0% |
!! | TCTGTTACAATATCTAAGAT+TGG | + | chr6.2:87085854-87085873 | MS.gene68993:intron | 25.0% |
!! | TTTTGCATGTGTCTATTTAA+AGG | + | chr6.2:87084890-87084909 | MS.gene68993:intron | 25.0% |
!! | TTTTTGTCACTAAGGAATTA+GGG | + | chr6.2:87085412-87085431 | MS.gene68993:intron | 25.0% |
!!! | AAATTTTGGTAATTAGTTCC+TGG | + | chr6.2:87084410-87084429 | MS.gene68993:intron | 25.0% |
!!! | AGGAATTAGGTCTTTATTTT+AGG | + | chr6.2:87085382-87085401 | MS.gene68993:intron | 25.0% |
!!! | CTTAATGCTTTTTATTGTGT+CGG | + | chr6.2:87085191-87085210 | MS.gene68993:intron | 25.0% |
!!! | GTTTAAAGTTTTTGTCACTA+AGG | + | chr6.2:87085404-87085423 | MS.gene68993:intron | 25.0% |
!!! | TAAAAAGTGCCTAATAAACT+AGG | - | chr6.2:87084612-87084631 | None:intergenic | 25.0% |
!!! | TTTTTTGGATCGCATATTTT+GGG | + | chr6.2:87084822-87084841 | MS.gene68993:intron | 25.0% |
ACTTTCAACACTGGAAAAAT+CGG | + | chr6.2:87084764-87084783 | MS.gene68993:intron | 30.0% | |
AGTTTGAGGAATTCAGAAAT+CGG | + | chr6.2:87084695-87084714 | MS.gene68993:intron | 30.0% | |
ATCATTGAAGGAGTTTAACA+AGG | + | chr6.2:87085001-87085020 | MS.gene68993:intron | 30.0% | |
ATTCTTGATCTAATTAGCTC+TGG | - | chr6.2:87084052-87084071 | None:intergenic | 30.0% | |
CAAAATATGCGATCCAAAAA+AGG | - | chr6.2:87084823-87084842 | None:intergenic | 30.0% | |
CAAGCATACCTTAGAAAAAA+GGG | + | chr6.2:87086350-87086369 | MS.gene68993:CDS | 30.0% | |
CACTTTATCATTCTTGATGT+AGG | - | chr6.2:87084128-87084147 | None:intergenic | 30.0% | |
CATAACAAACATGTTCATCT+AGG | - | chr6.2:87085117-87085136 | None:intergenic | 30.0% | |
CATAAGAGAGAAAATTGTTG+AGG | + | chr6.2:87086655-87086674 | MS.gene68993:CDS | 30.0% | |
CCTAATCTTCAAATTCACTA+AGG | + | chr6.2:87085362-87085381 | MS.gene68993:intron | 30.0% | |
CCTTAGTGAATTTGAAGATT+AGG | - | chr6.2:87085365-87085384 | None:intergenic | 30.0% | |
GAAATCAATAGTTGTGGTTT+CGG | + | chr6.2:87086241-87086260 | MS.gene68993:CDS | 30.0% | |
GAATGATAAAGTGACAGTAA+AGG | + | chr6.2:87084135-87084154 | MS.gene68993:CDS | 30.0% | |
GAGAAAATACGAATGTTACA+AGG | + | chr6.2:87084188-87084207 | MS.gene68993:CDS | 30.0% | |
TAAAGTGACAGTAAAGGATA+TGG | + | chr6.2:87084141-87084160 | MS.gene68993:CDS | 30.0% | |
TAACAACATACTCTACTTGA+GGG | - | chr6.2:87083955-87083974 | None:intergenic | 30.0% | |
TAATCCTACATGTTAACTGA+TGG | - | chr6.2:87085732-87085751 | None:intergenic | 30.0% | |
TCATAGAACTACACTTACTT+TGG | - | chr6.2:87084358-87084377 | None:intergenic | 30.0% | |
TCCCAGAATTACATCAAAAA+TGG | - | chr6.2:87084646-87084665 | None:intergenic | 30.0% | |
TGTGTCTATTTAAAGGAACT+CGG | + | chr6.2:87084897-87084916 | MS.gene68993:intron | 30.0% | |
TTGACACGAAAAAAAGATCA+AGG | - | chr6.2:87084523-87084542 | None:intergenic | 30.0% | |
! | ATTTTCTCTCTTATGTTCTC+GGG | - | chr6.2:87086650-87086669 | None:intergenic | 30.0% |
! | GTTTTTGTCACTAAGGAATT+AGG | + | chr6.2:87085411-87085430 | MS.gene68993:intron | 30.0% |
!! | AGGCACTTTTTATGTAATGT+GGG | + | chr6.2:87084620-87084639 | MS.gene68993:intron | 30.0% |
!! | ATTTTTCCAGTGTTGAAAGT+TGG | - | chr6.2:87084764-87084783 | None:intergenic | 30.0% |
!! | TAGGCACTTTTTATGTAATG+TGG | + | chr6.2:87084619-87084638 | MS.gene68993:intron | 30.0% |
!!! | ACTAGGTTATTAGCTTTTCA+TGG | + | chr6.2:87085490-87085509 | MS.gene68993:intron | 30.0% |
!!! | ACTTAGAGATTGCGATTTTT+TGG | + | chr6.2:87084926-87084945 | MS.gene68993:intron | 30.0% |
!!! | CTTTTTTGGATCGCATATTT+TGG | + | chr6.2:87084821-87084840 | MS.gene68993:intron | 30.0% |
!!! | GCCATTTTTGATGTAATTCT+GGG | + | chr6.2:87084642-87084661 | MS.gene68993:intron | 30.0% |
!!! | GTACGGTTTATTTTGTGATA+CGG | + | chr6.2:87085230-87085249 | MS.gene68993:intron | 30.0% |
!!! | TTTATTTTGTGATACGGAAG+TGG | + | chr6.2:87085236-87085255 | MS.gene68993:intron | 30.0% |
AAAAAGGCAAAACTACACCA+TGG | + | chr6.2:87084464-87084483 | MS.gene68993:intron | 35.0% | |
AAAAGGCAAAACTACACCAT+GGG | + | chr6.2:87084465-87084484 | MS.gene68993:intron | 35.0% | |
AAATTCAGCAGCAAAATCGA+TGG | - | chr6.2:87084741-87084760 | None:intergenic | 35.0% | |
AAATTCAGTTAAAGGACCCA+TGG | - | chr6.2:87084484-87084503 | None:intergenic | 35.0% | |
AACTGAAGGTGATCTTGAAA+AGG | + | chr6.2:87086325-87086344 | MS.gene68993:CDS | 35.0% | |
AAGCAGACAATTGCAACTAT+TGG | + | chr6.2:87084166-87084185 | MS.gene68993:CDS | 35.0% | |
AAGTGAGAAATTCAAGGAGT+TGG | + | chr6.2:87086496-87086515 | MS.gene68993:CDS | 35.0% | |
ACACTGTCATCCTTAATGAA+AGG | - | chr6.2:87086725-87086744 | None:intergenic | 35.0% | |
ACCGTACATCAATTTAAAGG+CGG | - | chr6.2:87085217-87085236 | None:intergenic | 35.0% | |
ATAGATACAAACTGAACCTG+TGG | - | chr6.2:87086554-87086573 | None:intergenic | 35.0% | |
ATTAATGGGAGAAAGATGCT+AGG | - | chr6.2:87085535-87085554 | None:intergenic | 35.0% | |
ATTACGTCTTCTGTTCATCA+AGG | + | chr6.2:87085807-87085826 | MS.gene68993:intron | 35.0% | |
ATTCCTAGATTACAAAGGCA+AGG | - | chr6.2:87085290-87085309 | None:intergenic | 35.0% | |
CAAAAGACCTAGAAACACAT+AGG | + | chr6.2:87084953-87084972 | MS.gene68993:intron | 35.0% | |
CACTTTAATGTTCTCTCCAA+TGG | - | chr6.2:87086783-87086802 | None:intergenic | 35.0% | |
CCTAATAAACTAGGATGACA+GGG | - | chr6.2:87084603-87084622 | None:intergenic | 35.0% | |
GAATTTCCAACTTTCAACAC+TGG | + | chr6.2:87084755-87084774 | MS.gene68993:intron | 35.0% | |
GATCAAGAATTGTTGAAGGA+CGG | + | chr6.2:87084062-87084081 | MS.gene68993:CDS | 35.0% | |
GCAAGCATACCTTAGAAAAA+AGG | + | chr6.2:87086349-87086368 | MS.gene68993:CDS | 35.0% | |
GGAATTCGTGAAGAAAGAAA+CGG | + | chr6.2:87083991-87084010 | MS.gene68993:CDS | 35.0% | |
GTAACAACATACTCTACTTG+AGG | - | chr6.2:87083956-87083975 | None:intergenic | 35.0% | |
GTCATTTCTTCATGTCAAGT+TGG | + | chr6.2:87084547-87084566 | MS.gene68993:intron | 35.0% | |
TAACTAAACCCTCCTTTGTT+GGG | + | chr6.2:87085081-87085100 | MS.gene68993:intron | 35.0% | |
TAGGAATAGATACAAACCCT+TGG | + | chr6.2:87085303-87085322 | MS.gene68993:intron | 35.0% | |
TATAGAGCAGCCTTTCATTA+AGG | + | chr6.2:87086712-87086731 | MS.gene68993:CDS | 35.0% | |
TCGATTCAATAGTTGAGACT+AGG | + | chr6.2:87085473-87085492 | MS.gene68993:intron | 35.0% | |
TGATGATATAGTCATGCAAG+TGG | + | chr6.2:87083922-87083941 | MS.gene68993:CDS | 35.0% | |
TGGAAGAAGTGAGAAATTCA+AGG | + | chr6.2:87086490-87086509 | MS.gene68993:CDS | 35.0% | |
TTAATGGGAGAAAGATGCTA+GGG | - | chr6.2:87085534-87085553 | None:intergenic | 35.0% | |
TTCAAGATCACCTTCAGTTT+CGG | - | chr6.2:87086324-87086343 | None:intergenic | 35.0% | |
TTCCTTCGTCACAATAGTTT+CGG | - | chr6.2:87086588-87086607 | None:intergenic | 35.0% | |
TTGCAGGAAATCAATAGTTG+TGG | + | chr6.2:87086235-87086254 | MS.gene68993:intron | 35.0% | |
TTTGGTAGAAGTAAATTGCG+AGG | + | chr6.2:87083859-87083878 | MS.gene68993:CDS | 35.0% | |
! | CTCTTTGAAAATTTCACCTC+GGG | - | chr6.2:87083897-87083916 | None:intergenic | 35.0% |
! | GCTCTTTGAAAATTTCACCT+CGG | - | chr6.2:87083898-87083917 | None:intergenic | 35.0% |
!! | GGTTCACTCTCTTTAAAACA+TGG | + | chr6.2:87086816-87086835 | MS.gene68993:CDS | 35.0% |
!! | TCACTCTCTTTAAAACATGG+TGG | + | chr6.2:87086819-87086838 | MS.gene68993:CDS | 35.0% |
!! | TTAAAGTGCGTCGTTTTGTT+CGG | + | chr6.2:87086795-87086814 | MS.gene68993:CDS | 35.0% |
!!! | ATGAGAGACCCTTTTTTCTA+AGG | - | chr6.2:87086361-87086380 | None:intergenic | 35.0% |
!!! | GGCCATTTTTGATGTAATTC+TGG | + | chr6.2:87084641-87084660 | MS.gene68993:intron | 35.0% |
AAACACATAGGAGAGCGATT+TGG | + | chr6.2:87084965-87084984 | MS.gene68993:intron | 40.0% | |
AACTAAACCCTCCTTTGTTG+GGG | + | chr6.2:87085082-87085101 | MS.gene68993:intron | 40.0% | |
ACTGTTCAATGTTGTGTTGC+AGG | + | chr6.2:87086219-87086238 | MS.gene68993:intron | 40.0% | |
ATAGACTAACAGCTGAAGGA+AGG | + | chr6.2:87086399-87086418 | MS.gene68993:CDS | 40.0% | |
CACCAACATGATGTCTAGTT+TGG | - | chr6.2:87086040-87086059 | None:intergenic | 40.0% | |
CAGTGTTTCAGTGAAAGACT+TGG | + | chr6.2:87086739-87086758 | MS.gene68993:CDS | 40.0% | |
CCCTGTCATCCTAGTTTATT+AGG | + | chr6.2:87084600-87084619 | MS.gene68993:intron | 40.0% | |
CGAATGTTACAAGGTTTGTG+TGG | + | chr6.2:87084197-87084216 | MS.gene68993:CDS | 40.0% | |
CGATCCAAAAAAGGCAGAAT+CGG | - | chr6.2:87084814-87084833 | None:intergenic | 40.0% | |
CGATGGCTGATTGGAAATAA+CGG | - | chr6.2:87084724-87084743 | None:intergenic | 40.0% | |
CTCACTTCTTCCAACAAAGT+CGG | - | chr6.2:87086483-87086502 | None:intergenic | 40.0% | |
GAATTGTTGAAGGACGGATA+AGG | + | chr6.2:87084068-87084087 | MS.gene68993:CDS | 40.0% | |
GATCCTTGCCTTTGTAATCT+AGG | + | chr6.2:87085284-87085303 | MS.gene68993:intron | 40.0% | |
GCAACTTGGAACATCATTGA+AGG | + | chr6.2:87084989-87085008 | MS.gene68993:intron | 40.0% | |
GCCGCCTTTAAATTGATGTA+CGG | + | chr6.2:87085213-87085232 | MS.gene68993:intron | 40.0% | |
GCCTAATAAACTAGGATGAC+AGG | - | chr6.2:87084604-87084623 | None:intergenic | 40.0% | |
GGAAGAATCTCAAAGAGGTT+AGG | + | chr6.2:87086677-87086696 | MS.gene68993:CDS | 40.0% | |
GGAGGAAAAACACAAGTTTG+AGG | + | chr6.2:87084681-87084700 | MS.gene68993:intron | 40.0% | |
GTAACTAAACCCTCCTTTGT+TGG | + | chr6.2:87085080-87085099 | MS.gene68993:intron | 40.0% | |
TACATTCACGATGCACACAT+CGG | + | chr6.2:87086431-87086450 | MS.gene68993:CDS | 40.0% | |
TACGCCATCAGTTAACATGT+AGG | + | chr6.2:87085725-87085744 | MS.gene68993:intron | 40.0% | |
TCAGTGGTAAGAGAAGAAAC+CGG | + | chr6.2:87086266-87086285 | MS.gene68993:CDS | 40.0% | |
TCCTTCGTCACAATAGTTTC+GGG | - | chr6.2:87086587-87086606 | None:intergenic | 40.0% | |
TCTTAACAAATGCACACTCC+AGG | - | chr6.2:87084431-87084450 | None:intergenic | 40.0% | |
TCTTTCTTCACGAATTCCTC+AGG | - | chr6.2:87083989-87084008 | None:intergenic | 40.0% | |
TGATATAGTCATGCAAGTGG+CGG | + | chr6.2:87083925-87083944 | MS.gene68993:CDS | 40.0% | |
TGCACAAACTGCAGCAAAAA+CGG | + | chr6.2:87084276-87084295 | MS.gene68993:intron | 40.0% | |
TGCCAAACTAGACATCATGT+TGG | + | chr6.2:87086035-87086054 | MS.gene68993:intron | 40.0% | |
TGTCAACGAAAGTCCAATTG+TGG | + | chr6.2:87085885-87085904 | MS.gene68993:intron | 40.0% | |
TTGAGGGAAGAATCTCAAAG+AGG | + | chr6.2:87086672-87086691 | MS.gene68993:CDS | 40.0% | |
! | AACTGTGAAACCGACTTTGT+TGG | + | chr6.2:87086470-87086489 | MS.gene68993:CDS | 40.0% |
! | CTTGTGTTTTTCCTCCTTTG+TGG | - | chr6.2:87084677-87084696 | None:intergenic | 40.0% |
! | GACAGTAGGATCAGTACTTT+TGG | + | chr6.2:87083841-87083860 | MS.gene68993:CDS | 40.0% |
! | TCCTTCAGCTGTTAGTCTAT+CGG | - | chr6.2:87086399-87086418 | None:intergenic | 40.0% |
!! | CGCATATTTTGGGCTTAAGT+GGG | + | chr6.2:87084832-87084851 | MS.gene68993:intron | 40.0% |
!! | TCGCATATTTTGGGCTTAAG+TGG | + | chr6.2:87084831-87084850 | MS.gene68993:intron | 40.0% |
!! | TTTCAGTGAAAGACTTGGTG+AGG | + | chr6.2:87086744-87086763 | MS.gene68993:CDS | 40.0% |
AACTACTCCAGTGAAAGAGG+AGG | + | chr6.2:87084300-87084319 | MS.gene68993:CDS | 45.0% | |
ACGGATAAGGAAGAGACTTG+AGG | + | chr6.2:87084081-87084100 | MS.gene68993:CDS | 45.0% | |
AGGCAAAGTATAGCTGCCAT+TGG | + | chr6.2:87086764-87086783 | MS.gene68993:CDS | 45.0% | |
AGGTTTGTGTGGTTCAACCT+CGG | + | chr6.2:87084208-87084227 | MS.gene68993:CDS | 45.0% | |
ATCACCTTCAGTTTCGGCAA+GGG | - | chr6.2:87086318-87086337 | None:intergenic | 45.0% | |
CAGCAAAATCGATGGCTGAT+TGG | - | chr6.2:87084733-87084752 | None:intergenic | 45.0% | |
CATGCAAAATCGGTTACCGA+TGG | - | chr6.2:87084879-87084898 | None:intergenic | 45.0% | |
CGACTTAAGCAGCAAAATCC+TGG | - | chr6.2:87084255-87084274 | None:intergenic | 45.0% | |
CTAACAGCTGAAGGAAGGAT+CGG | + | chr6.2:87086404-87086423 | MS.gene68993:CDS | 45.0% | |
CTGGAAAAATCGGTTACCGA+TGG | + | chr6.2:87084774-87084793 | MS.gene68993:intron | 45.0% | |
GAATTCCTCAGGAACGTCAT+CGG | - | chr6.2:87083978-87083997 | None:intergenic | 45.0% | |
GGGTTTGGAAAAGAAAAGCC+AGG | + | chr6.2:87084234-87084253 | MS.gene68993:intron | 45.0% | |
GGTAACTACTCCAGTGAAAG+AGG | + | chr6.2:87084297-87084316 | MS.gene68993:CDS | 45.0% | |
TAAGAGAAGAAACCGGTGCT+GGG | + | chr6.2:87086168-87086187 | MS.gene68993:intron | 45.0% | |
TACTCATCCCCAACAAAGGA+GGG | - | chr6.2:87085092-87085111 | None:intergenic | 45.0% | |
TCCCGAAACTATTGTGACGA+AGG | + | chr6.2:87086583-87086602 | MS.gene68993:CDS | 45.0% | |
TCCGATAGACTAACAGCTGA+AGG | + | chr6.2:87086395-87086414 | MS.gene68993:CDS | 45.0% | |
TCGCTCTCCTATGTGTTTCT+AGG | - | chr6.2:87084963-87084982 | None:intergenic | 45.0% | |
TTAAGAGAAGAAACCGGTGC+TGG | + | chr6.2:87086167-87086186 | MS.gene68993:intron | 45.0% | |
TTGGACTTTCGTTGACAGCA+AGG | - | chr6.2:87085882-87085901 | None:intergenic | 45.0% | |
! | AGTCCAATTGTGGTACTGAG+TGG | + | chr6.2:87085895-87085914 | MS.gene68993:intron | 45.0% |
! | AGTTACCGATTGGATGCCAT+CGG | + | chr6.2:87084860-87084879 | MS.gene68993:intron | 45.0% |
! | GAGGAAAATTTTGTCTCCCG+AGG | + | chr6.2:87083878-87083897 | MS.gene68993:CDS | 45.0% |
!!! | GCTACCGATTCTGCCTTTTT+TGG | + | chr6.2:87084807-87084826 | MS.gene68993:intron | 45.0% |
AAAGCCCTTGCCGAAACTGA+AGG | + | chr6.2:87086311-87086330 | MS.gene68993:CDS | 50.0% | |
AGTTGTGGTTTCGGCTTCAG+TGG | + | chr6.2:87086250-87086269 | MS.gene68993:CDS | 50.0% | |
CAATCCTCGAGTTCGACACT+CGG | + | chr6.2:87085654-87085673 | MS.gene68993:intron | 50.0% | |
CTACTCATCCCCAACAAAGG+AGG | - | chr6.2:87085093-87085112 | None:intergenic | 50.0% | |
GATCACCTTCAGTTTCGGCA+AGG | - | chr6.2:87086319-87086338 | None:intergenic | 50.0% | |
GGTCTACTCATCCCCAACAA+AGG | - | chr6.2:87085096-87085115 | None:intergenic | 50.0% | |
GGTTACCGATGGCATCCAAT+CGG | - | chr6.2:87084868-87084887 | None:intergenic | 50.0% | |
GTAAGAGAAGAAACCGGTGC+TGG | + | chr6.2:87086272-87086291 | MS.gene68993:CDS | 50.0% | |
GTGGGCAATCAGTTACCGAT+TGG | + | chr6.2:87084850-87084869 | MS.gene68993:intron | 50.0% | |
TCGCCACTCAGTACCACAAT+TGG | - | chr6.2:87085901-87085920 | None:intergenic | 50.0% | |
TGTTACCGATGACGTTCCTG+AGG | + | chr6.2:87083970-87083989 | MS.gene68993:CDS | 50.0% | |
TGTTCTCGGGTTTCGAAGCA+AGG | - | chr6.2:87086637-87086656 | None:intergenic | 50.0% | |
! | GAGAGCGATTTGGAGCAACT+TGG | + | chr6.2:87084975-87084994 | MS.gene68993:intron | 50.0% |
! | TCAAATGAGCTGTGCTGCTG+TGG | - | chr6.2:87086846-87086865 | None:intergenic | 50.0% |
! | TCTTTTCCAAACCCTCACCG+AGG | - | chr6.2:87084228-87084247 | None:intergenic | 50.0% |
ACAGTCCATCATCCCAGCAC+CGG | - | chr6.2:87086183-87086202 | None:intergenic | 55.0% | |
CAGAATCGGTAGCCGATGCA+AGG | - | chr6.2:87084800-87084819 | None:intergenic | 55.0% | |
CTGGGAGCTAGAAGCCACAA+AGG | + | chr6.2:87084660-87084679 | MS.gene68993:intron | 55.0% | |
GGAGCTAGAAGCCACAAAGG+AGG | + | chr6.2:87084663-87084682 | MS.gene68993:intron | 55.0% | |
GTGTGGTTCAACCTCGGTGA+GGG | + | chr6.2:87084214-87084233 | MS.gene68993:intron | 55.0% | |
GTTCAACCTCGGTGAGGGTT+TGG | + | chr6.2:87084219-87084238 | MS.gene68993:intron | 55.0% | |
TGTGTGGTTCAACCTCGGTG+AGG | + | chr6.2:87084213-87084232 | MS.gene68993:intron | 55.0% | |
! | AGAAACCGGTGCTGGGATGA+TGG | + | chr6.2:87086175-87086194 | MS.gene68993:intron | 55.0% |
! | GCAAGTTGCTGCTTGTCCAC+AGG | + | chr6.2:87086535-87086554 | MS.gene68993:CDS | 55.0% |
! | GGTTACCGATGGCCTTGCAT+CGG | + | chr6.2:87084785-87084804 | MS.gene68993:intron | 55.0% |
!! | AAGACCGAGTGTCGAACTCG+AGG | - | chr6.2:87085661-87085680 | None:intergenic | 55.0% |
GCAGCAGCCTCCTCTTTCAC+TGG | - | chr6.2:87084310-87084329 | None:intergenic | 60.0% | |
GGTAGCCGATGCAAGGCCAT+CGG | - | chr6.2:87084793-87084812 | None:intergenic | 60.0% | |
TGCTGCTGCTGCAGAAGCGA+AGG | + | chr6.2:87084324-87084343 | MS.gene68993:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 87083839 | 87086865 | 87083839 | ID=MS.gene68993 |
chr6.2 | mRNA | 87083839 | 87086865 | 87083839 | ID=MS.gene68993.t1;Parent=MS.gene68993 |
chr6.2 | exon | 87083839 | 87084229 | 87083839 | ID=MS.gene68993.t1.exon1;Parent=MS.gene68993.t1 |
chr6.2 | CDS | 87083839 | 87084229 | 87083839 | ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1 |
chr6.2 | exon | 87084290 | 87084359 | 87084290 | ID=MS.gene68993.t1.exon2;Parent=MS.gene68993.t1 |
chr6.2 | CDS | 87084290 | 87084359 | 87084290 | ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1 |
chr6.2 | exon | 87086241 | 87086865 | 87086241 | ID=MS.gene68993.t1.exon3;Parent=MS.gene68993.t1 |
chr6.2 | CDS | 87086241 | 87086865 | 87086241 | ID=cds.MS.gene68993.t1;Parent=MS.gene68993.t1 |
Gene Sequence |
Protein sequence |