Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059601.t1 | XP_013453137.1 | 29.3 | 447 | 56 | 7 | 1 | 203 | 560 | 990 | 7.40E-35 | 157.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059601.t1 | B0THD8 | 71.4 | 42 | 12 | 0 | 254 | 295 | 1 | 42 | 2.1e-09 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059601.t1 | A0A072UMS8 | 29.3 | 447 | 56 | 7 | 1 | 203 | 560 | 990 | 5.3e-35 | 157.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051279 | MS.gene059601 | 0.807105 | 5.95E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene059601 | 0.816121 | 6.51E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene059601 | 0.80409 | 2.55E-49 | -1.69E-46 |
| MS.gene059276 | MS.gene059601 | 0.819087 | 1.40E-52 | -1.69E-46 |
| MS.gene059601 | MS.gene061471 | 0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene059601 | MS.gene061477 | 0.835907 | 1.28E-56 | -1.69E-46 |
| MS.gene059601 | MS.gene061485 | 0.842043 | 3.29E-58 | -1.69E-46 |
| MS.gene059601 | MS.gene064321 | 0.804351 | 2.25E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene065039 | 0.801392 | 9.20E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene065347 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene066335 | 0.829677 | 4.50E-55 | -1.69E-46 |
| MS.gene059601 | MS.gene066782 | 0.818152 | 2.27E-52 | -1.69E-46 |
| MS.gene059601 | MS.gene066784 | 0.824723 | 6.92E-54 | -1.69E-46 |
| MS.gene059601 | MS.gene067163 | 0.803756 | 3.00E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene069956 | 0.822692 | 2.07E-53 | -1.69E-46 |
| MS.gene059601 | MS.gene073753 | 0.803684 | 3.10E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene07876 | 0.806357 | 8.56E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene20253 | 0.809971 | 1.45E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene22707 | 0.812758 | 3.61E-51 | -1.69E-46 |
| MS.gene059601 | MS.gene23055 | 0.803721 | 3.04E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene23528 | 0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene24908 | 0.804178 | 2.45E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene25778 | 0.803752 | 3.00E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene26659 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene27421 | 0.802553 | 5.31E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene29489 | 0.809845 | 1.55E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene30739 | 0.808028 | 3.79E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene31231 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene35631 | 0.800206 | 1.61E-48 | -1.69E-46 |
| MS.gene059601 | MS.gene48919 | 0.803916 | 2.77E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene51818 | 0.800578 | 1.35E-48 | -1.69E-46 |
| MS.gene059601 | MS.gene53064 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene53321 | 0.801064 | 1.07E-48 | -1.69E-46 |
| MS.gene059601 | MS.gene55406 | 0.820206 | 7.75E-53 | -1.69E-46 |
| MS.gene059601 | MS.gene57178 | 0.815218 | 1.03E-51 | -1.69E-46 |
| MS.gene059601 | MS.gene58547 | 0.808233 | 3.42E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene58802 | 0.814543 | 1.46E-51 | -1.69E-46 |
| MS.gene059601 | MS.gene60171 | 0.818964 | 1.49E-52 | -1.69E-46 |
| MS.gene059601 | MS.gene62904 | 0.804717 | 1.89E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene67042 | 0.864529 | 1.14E-64 | -1.69E-46 |
| MS.gene059601 | MS.gene67893 | 0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene059601 | MS.gene68993 | 0.807215 | 5.64E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene68999 | 0.854371 | 1.29E-61 | -1.69E-46 |
| MS.gene059601 | MS.gene69008 | 0.835312 | 1.81E-56 | -1.69E-46 |
| MS.gene059601 | MS.gene69016 | 0.805993 | 1.02E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene69023 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene059601 | MS.gene71440 | 0.810566 | 1.08E-50 | -1.69E-46 |
| MS.gene059601 | MS.gene71952 | 0.847772 | 9.36E-60 | -1.69E-46 |
| MS.gene059601 | MS.gene71953 | 0.85627 | 3.60E-62 | -1.69E-46 |
| MS.gene059601 | MS.gene72400 | 0.848937 | 4.46E-60 | -1.69E-46 |
| MS.gene059601 | MS.gene72555 | 0.802626 | 5.13E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene80853 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene059601 | MS.gene90022 | 0.826591 | 2.49E-54 | -1.69E-46 |
| MS.gene059601 | MS.gene93654 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene98087 | 0.802106 | 6.57E-49 | -1.69E-46 |
| MS.gene059601 | MS.gene98612 | 0.800194 | 1.62E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059601.t1 | MTR_6g088245 | 57.798 | 109 | 30 | 4 | 95 | 203 | 898 | 990 | 5.20e-30 | 120 |
| MS.gene059601.t1 | MTR_6g088245 | 70.149 | 67 | 20 | 0 | 1 | 67 | 560 | 626 | 1.14e-21 | 95.9 |
| MS.gene059601.t1 | MTR_6g488300 | 75.676 | 74 | 18 | 0 | 1 | 74 | 556 | 629 | 1.09e-27 | 113 |
| MS.gene059601.t1 | MTR_6g488300 | 48.750 | 80 | 40 | 1 | 42 | 121 | 795 | 873 | 3.69e-13 | 70.5 |
| MS.gene059601.t1 | MTR_6g087320 | 64.835 | 91 | 29 | 2 | 1 | 89 | 558 | 647 | 2.87e-24 | 103 |
| MS.gene059601.t1 | MTR_6g087320 | 41.284 | 109 | 49 | 3 | 95 | 203 | 908 | 1001 | 6.02e-15 | 75.9 |
| MS.gene059601.t1 | MTR_6g087260 | 61.538 | 91 | 32 | 2 | 1 | 89 | 557 | 646 | 1.09e-23 | 101 |
| MS.gene059601.t1 | MTR_6g087260 | 41.270 | 126 | 51 | 4 | 132 | 248 | 954 | 1065 | 5.53e-16 | 79.0 |
| MS.gene059601.t1 | MTR_6g087200 | 58.242 | 91 | 35 | 2 | 1 | 89 | 557 | 646 | 7.25e-23 | 99.4 |
| MS.gene059601.t1 | MTR_6g087200 | 31.197 | 234 | 71 | 8 | 46 | 203 | 790 | 1009 | 8.79e-17 | 81.3 |
| MS.gene059601.t1 | MTR_6g087200 | 58.242 | 91 | 35 | 2 | 1 | 89 | 557 | 646 | 8.81e-23 | 99.0 |
| MS.gene059601.t1 | MTR_6g087200 | 31.197 | 234 | 71 | 8 | 46 | 203 | 790 | 1009 | 9.52e-17 | 81.3 |
| MS.gene059601.t1 | MTR_6g088250 | 67.568 | 74 | 24 | 0 | 1 | 74 | 557 | 630 | 3.46e-22 | 97.4 |
| MS.gene059601.t1 | MTR_6g088250 | 78.723 | 47 | 10 | 0 | 249 | 295 | 1255 | 1301 | 1.51e-15 | 77.8 |
| MS.gene059601.t1 | MTR_6g088250 | 43.373 | 83 | 43 | 3 | 121 | 203 | 928 | 1006 | 1.93e-11 | 65.1 |
| MS.gene059601.t1 | MTR_0428s0030 | 68.000 | 75 | 16 | 1 | 1 | 67 | 557 | 631 | 3.69e-22 | 97.4 |
| MS.gene059601.t1 | MTR_0428s0030 | 53.030 | 66 | 30 | 1 | 42 | 106 | 803 | 868 | 1.84e-11 | 65.5 |
| MS.gene059601.t1 | MTR_0428s0030 | 30.263 | 152 | 73 | 5 | 115 | 252 | 957 | 1089 | 7.95e-11 | 63.5 |
| MS.gene059601.t1 | MTR_6g088250 | 67.568 | 74 | 24 | 0 | 1 | 74 | 557 | 630 | 4.39e-22 | 97.1 |
| MS.gene059601.t1 | MTR_6g088250 | 43.373 | 83 | 43 | 3 | 121 | 203 | 928 | 1006 | 2.29e-11 | 65.1 |
| MS.gene059601.t1 | MTR_6g088250 | 67.568 | 74 | 24 | 0 | 1 | 74 | 557 | 630 | 4.71e-22 | 97.1 |
| MS.gene059601.t1 | MTR_6g088250 | 43.373 | 83 | 43 | 3 | 121 | 203 | 928 | 1006 | 2.41e-11 | 65.1 |
| MS.gene059601.t1 | MTR_2g039770 | 72.059 | 68 | 18 | 1 | 1 | 67 | 557 | 624 | 7.98e-22 | 96.3 |
| MS.gene059601.t1 | MTR_2g039770 | 30.882 | 204 | 88 | 6 | 94 | 258 | 912 | 1101 | 1.43e-16 | 80.9 |
| MS.gene059601.t1 | MTR_2g039770 | 38.235 | 102 | 61 | 2 | 42 | 143 | 789 | 888 | 2.30e-11 | 65.1 |
| MS.gene059601.t1 | MTR_1408s0010 | 68.000 | 75 | 16 | 1 | 1 | 67 | 1 | 75 | 1.82e-21 | 94.4 |
| MS.gene059601.t1 | MTR_1408s0010 | 53.030 | 66 | 30 | 1 | 42 | 106 | 247 | 312 | 2.81e-11 | 64.3 |
| MS.gene059601.t1 | MTR_6g088465 | 68.657 | 67 | 21 | 0 | 1 | 67 | 560 | 626 | 2.63e-21 | 94.7 |
| MS.gene059601.t1 | MTR_6g088465 | 45.133 | 113 | 44 | 5 | 95 | 203 | 884 | 982 | 1.81e-16 | 80.5 |
| MS.gene059601.t1 | MTR_6g088270 | 58.824 | 85 | 35 | 0 | 211 | 295 | 806 | 890 | 3.58e-20 | 91.3 |
| MS.gene059601.t1 | MTR_6g088270 | 43.678 | 87 | 46 | 1 | 212 | 295 | 563 | 649 | 1.61e-13 | 71.6 |
| MS.gene059601.t1 | MTR_6g087850 | 64.000 | 75 | 26 | 1 | 1 | 74 | 559 | 633 | 2.14e-19 | 89.0 |
| MS.gene059601.t1 | MTR_6g027080 | 38.406 | 138 | 67 | 3 | 94 | 227 | 305 | 428 | 2.77e-19 | 87.8 |
| MS.gene059601.t1 | MTR_2g039790 | 97.561 | 41 | 1 | 0 | 249 | 289 | 15 | 55 | 1.01e-18 | 81.6 |
| MS.gene059601.t1 | MTR_6g084360 | 58.140 | 86 | 30 | 2 | 5 | 85 | 415 | 499 | 2.08e-18 | 86.3 |
| MS.gene059601.t1 | MTR_6g084360 | 44.286 | 70 | 26 | 1 | 134 | 203 | 800 | 856 | 1.42e-11 | 65.5 |
| MS.gene059601.t1 | MTR_6g027090 | 66.667 | 66 | 20 | 1 | 1 | 66 | 306 | 369 | 3.10e-18 | 84.3 |
| MS.gene059601.t1 | MTR_6g488290 | 87.234 | 47 | 6 | 0 | 249 | 295 | 38 | 84 | 5.09e-18 | 80.9 |
| MS.gene059601.t1 | MTR_0428s0020 | 87.234 | 47 | 6 | 0 | 249 | 295 | 38 | 84 | 8.91e-18 | 80.9 |
| MS.gene059601.t1 | MTR_4g081290 | 59.459 | 74 | 30 | 0 | 1 | 74 | 543 | 616 | 1.00e-17 | 84.0 |
| MS.gene059601.t1 | MTR_6g088190 | 58.108 | 74 | 29 | 1 | 1 | 74 | 329 | 400 | 1.45e-17 | 83.2 |
| MS.gene059601.t1 | MTR_4g081250 | 52.747 | 91 | 39 | 3 | 1 | 89 | 553 | 641 | 1.47e-17 | 83.6 |
| MS.gene059601.t1 | MTR_4g080070 | 51.765 | 85 | 40 | 1 | 1 | 85 | 561 | 644 | 1.91e-17 | 83.2 |
| MS.gene059601.t1 | MTR_4g081230 | 54.545 | 77 | 35 | 0 | 1 | 77 | 569 | 645 | 1.51e-16 | 80.5 |
| MS.gene059601.t1 | MTR_6g087300 | 82.979 | 47 | 8 | 0 | 249 | 295 | 204 | 250 | 2.29e-16 | 79.0 |
| MS.gene059601.t1 | MTR_4g081280 | 52.941 | 85 | 38 | 2 | 1 | 85 | 527 | 609 | 1.21e-15 | 77.8 |
| MS.gene059601.t1 | MTR_6g088260 | 45.378 | 119 | 49 | 3 | 1 | 107 | 539 | 653 | 1.51e-15 | 77.8 |
| MS.gene059601.t1 | MTR_6g088260 | 43.478 | 69 | 26 | 1 | 135 | 203 | 950 | 1005 | 2.00e-11 | 65.1 |
| MS.gene059601.t1 | MTR_6g088260 | 45.378 | 119 | 49 | 3 | 1 | 107 | 539 | 653 | 2.24e-15 | 77.0 |
| MS.gene059601.t1 | MTR_6g088260 | 43.478 | 69 | 26 | 1 | 135 | 203 | 950 | 1005 | 2.43e-11 | 65.1 |
| MS.gene059601.t1 | MTR_4g080320 | 54.054 | 74 | 33 | 1 | 1 | 74 | 556 | 628 | 2.79e-15 | 76.6 |
| MS.gene059601.t1 | MTR_4g080320 | 54.054 | 74 | 33 | 1 | 1 | 74 | 379 | 451 | 3.22e-15 | 76.6 |
| MS.gene059601.t1 | MTR_4g080330 | 55.224 | 67 | 29 | 1 | 1 | 67 | 548 | 613 | 3.54e-15 | 76.6 |
| MS.gene059601.t1 | MTR_6g081090 | 87.500 | 40 | 5 | 0 | 249 | 288 | 5 | 44 | 6.18e-15 | 70.5 |
| MS.gene059601.t1 | MTR_4g080060 | 56.716 | 67 | 28 | 1 | 1 | 67 | 562 | 627 | 8.71e-15 | 75.5 |
| MS.gene059601.t1 | MTR_4g080060 | 56.716 | 67 | 28 | 1 | 1 | 67 | 363 | 428 | 1.18e-14 | 74.7 |
| MS.gene059601.t1 | MTR_4g081270 | 55.405 | 74 | 32 | 1 | 1 | 74 | 658 | 730 | 3.22e-14 | 73.6 |
| MS.gene059601.t1 | MTR_7g069160 | 53.731 | 67 | 30 | 1 | 1 | 67 | 642 | 707 | 4.58e-14 | 73.2 |
| MS.gene059601.t1 | MTR_7g069160 | 53.731 | 67 | 30 | 1 | 1 | 67 | 634 | 699 | 4.74e-14 | 73.2 |
| MS.gene059601.t1 | MTR_7g069160 | 53.731 | 67 | 30 | 1 | 1 | 67 | 640 | 705 | 4.79e-14 | 73.2 |
| MS.gene059601.t1 | MTR_7g069160 | 53.731 | 67 | 30 | 1 | 1 | 67 | 634 | 699 | 4.80e-14 | 73.2 |
| MS.gene059601.t1 | MTR_4g081330 | 48.352 | 91 | 43 | 3 | 1 | 89 | 565 | 653 | 9.49e-14 | 72.4 |
| MS.gene059601.t1 | MTR_4g080777 | 53.030 | 66 | 30 | 1 | 1 | 66 | 648 | 712 | 1.07e-12 | 68.9 |
| MS.gene059601.t1 | MTR_4g080777 | 53.030 | 66 | 30 | 1 | 1 | 66 | 369 | 433 | 1.39e-12 | 68.6 |
| MS.gene059601.t1 | MTR_7g069580 | 47.297 | 74 | 38 | 1 | 1 | 74 | 533 | 605 | 1.54e-12 | 68.6 |
| MS.gene059601.t1 | MTR_7g069100 | 50.746 | 67 | 32 | 1 | 1 | 67 | 574 | 639 | 1.63e-12 | 68.2 |
| MS.gene059601.t1 | MTR_7g069580 | 47.297 | 74 | 38 | 1 | 1 | 74 | 207 | 279 | 2.62e-12 | 67.8 |
| MS.gene059601.t1 | MTR_7g069120 | 51.429 | 70 | 33 | 1 | 1 | 70 | 611 | 679 | 3.07e-12 | 67.8 |
| MS.gene059601.t1 | MTR_2g083650 | 48.649 | 74 | 37 | 1 | 1 | 74 | 593 | 665 | 1.05e-11 | 65.9 |
| MS.gene059601.t1 | MTR_6g038090 | 58.491 | 53 | 22 | 0 | 14 | 66 | 557 | 609 | 1.23e-11 | 65.9 |
| MS.gene059601.t1 | MTR_6g078420 | 35.043 | 117 | 53 | 3 | 1 | 107 | 560 | 663 | 1.45e-11 | 65.5 |
| MS.gene059601.t1 | MTR_3g012470 | 43.678 | 87 | 38 | 2 | 1 | 77 | 550 | 635 | 1.91e-11 | 65.5 |
| MS.gene059601.t1 | MTR_3g012470 | 43.678 | 87 | 38 | 2 | 1 | 77 | 550 | 635 | 2.65e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059601.t1 | AT4G29060 | 55.556 | 81 | 32 | 3 | 218 | 295 | 480 | 559 | 9.13e-16 | 78.2 |
| MS.gene059601.t1 | AT4G29060 | 84.091 | 44 | 7 | 0 | 252 | 295 | 754 | 797 | 4.04e-15 | 76.3 |
| MS.gene059601.t1 | AT4G29060 | 55.556 | 81 | 32 | 3 | 218 | 295 | 480 | 559 | 5.80e-15 | 75.9 |
Find 73 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCATTGGTTAAACAATTA+AGG | 0.145910 | 6.4:-60974160 | MS.gene059601:CDS |
| CATTCCTTCTCACCCAATTT+TGG | 0.162540 | 6.4:+60977259 | None:intergenic |
| GAAATCCAGTTTGAAGTTCT+TGG | 0.217175 | 6.4:-60976851 | MS.gene059601:CDS |
| TATCCATAGGTGACTTGATT+TGG | 0.309424 | 6.4:+60976910 | None:intergenic |
| CATTGATGGGGATGAATGTT+TGG | 0.326141 | 6.4:-60976798 | MS.gene059601:CDS |
| ATTGAAACTAACTTCCATAT+TGG | 0.327000 | 6.4:+60976988 | None:intergenic |
| CTTATTATCATGGGCCAATA+TGG | 0.332672 | 6.4:-60977002 | MS.gene059601:CDS |
| TCGCTATCTGTCTCAGTTGC+AGG | 0.346851 | 6.4:+60976018 | None:intergenic |
| TCCCTCAGCTGCTAGTCTTC+CGG | 0.347023 | 6.4:+60974020 | None:intergenic |
| CTCATTGGTTAAACAATTAA+GGG | 0.369404 | 6.4:-60974159 | MS.gene059601:CDS |
| GATTTCTTTAAAATAATCAT+AGG | 0.372618 | 6.4:+60976868 | None:intergenic |
| CGCAAGCATACCTCAGGAAA+AGG | 0.377565 | 6.4:-60974067 | MS.gene059601:CDS |
| AAGAACTATTGGCAGAATAA+AGG | 0.381148 | 6.4:-60977301 | MS.gene059601:CDS |
| TTTGGAGCATTGCAAGTTGT+TGG | 0.387179 | 6.4:-60977377 | MS.gene059601:intron |
| ATGTCTGATTCTGTAACAAC+AGG | 0.394057 | 6.4:+60975979 | None:intergenic |
| CGAACTTGTAGAATTGATCT+TGG | 0.402701 | 6.4:-60977998 | MS.gene059601:CDS |
| GTATGGAGGTGAAGAGTTGC+GGG | 0.408987 | 6.4:-60976775 | MS.gene059601:CDS |
| TCGTTGGGATGAAAATTTGA+TGG | 0.413470 | 6.4:+60978018 | None:intergenic |
| GACCTCCAAGAACTTCAAAC+TGG | 0.415097 | 6.4:+60976846 | None:intergenic |
| GAAATCAACAGTAGTGGTTT+CGG | 0.418581 | 6.4:-60974183 | MS.gene059601:CDS |
| AGTAGTGGTTTCGGCCTCAT+TGG | 0.422526 | 6.4:-60974174 | MS.gene059601:CDS |
| ATCAATTCTACAAGTTCGTT+GGG | 0.427518 | 6.4:+60978003 | None:intergenic |
| AATTTGTTTGAAAGACTCAA+TGG | 0.428362 | 6.4:+60978081 | None:intergenic |
| GGAACTCTCAACAGTTTCAT+AGG | 0.432348 | 6.4:+60976962 | None:intergenic |
| ACCACTCTCGTGCGGGATCA+TGG | 0.439300 | 6.4:-60977328 | MS.gene059601:CDS |
| GAAGCAACATTACACAACTA+TGG | 0.441676 | 6.4:-60977972 | MS.gene059601:CDS |
| ATCCAGAGTGCTTATTATCA+TGG | 0.443204 | 6.4:-60977012 | MS.gene059601:CDS |
| ACAAATTAAGATATGTTAAG+TGG | 0.444007 | 6.4:-60978065 | MS.gene059601:CDS |
| ATCTTAGATTGCTCATCATC+AGG | 0.446557 | 6.4:-60978128 | MS.gene059601:CDS |
| GATCAATTCTACAAGTTCGT+TGG | 0.459593 | 6.4:+60978002 | None:intergenic |
| ATTTGTTTGAAAGACTCAAT+GGG | 0.462295 | 6.4:+60978082 | None:intergenic |
| AGAAACCGGTGCAGGGATGA+TGG | 0.478121 | 6.4:-60974135 | MS.gene059601:CDS |
| CGCACGAGAGTGGTAGCAAA+AGG | 0.483382 | 6.4:+60977337 | None:intergenic |
| TGAAGAGTTGCGGGTATCGT+TGG | 0.484573 | 6.4:-60976766 | MS.gene059601:CDS |
| TGGGGATGAATGTTTGGGTA+TGG | 0.485977 | 6.4:-60976792 | MS.gene059601:CDS |
| ATCATGGTGAGAAGAACTAT+TGG | 0.492844 | 6.4:-60977312 | MS.gene059601:CDS |
| ATTGATGGGGATGAATGTTT+GGG | 0.494757 | 6.4:-60976797 | MS.gene059601:CDS |
| GAAGAGTTGCGGGTATCGTT+GGG | 0.500191 | 6.4:-60976765 | MS.gene059601:intron |
| AGAGTTCCAGTCATTCTCAA+TGG | 0.502898 | 6.4:-60976947 | MS.gene059601:CDS |
| GGTATGGAGGTGAAGAGTTG+CGG | 0.509927 | 6.4:-60976776 | MS.gene059601:CDS |
| TTAAGGGAAGAAACCGGTGC+AGG | 0.512063 | 6.4:-60974143 | MS.gene059601:CDS |
| TGACCAAATCAAGTCACCTA+TGG | 0.513768 | 6.4:-60976913 | MS.gene059601:CDS |
| GATTCTGTAACAACAGGGCT+AGG | 0.516573 | 6.4:+60975985 | None:intergenic |
| AGACCTCCATTGAGAATGAC+TGG | 0.521548 | 6.4:+60976941 | None:intergenic |
| CCTTAATTGTTTAACCAATG+AGG | 0.525034 | 6.4:+60974160 | None:intergenic |
| AACAGAAGGCGATCTTGAAA+AGG | 0.525411 | 6.4:-60974090 | MS.gene059601:CDS |
| TCATCCGCTGATAAGAAATC+CGG | 0.529747 | 6.4:-60974039 | MS.gene059601:CDS |
| TTTGATGGCAAACACTTGAA+AGG | 0.545282 | 6.4:+60978033 | None:intergenic |
| GCCCATGATAATAAGCACTC+TGG | 0.545325 | 6.4:+60977010 | None:intergenic |
| AAAAGGCGCAAGCATACCTC+AGG | 0.548541 | 6.4:-60974073 | MS.gene059601:CDS |
| TCCAGAGTGCTTATTATCAT+GGG | 0.549070 | 6.4:-60977011 | MS.gene059601:CDS |
| AGGCACTGTGGACATATCTC+AGG | 0.549556 | 6.4:-60978108 | MS.gene059601:CDS |
| ATCCAGTTTGAAGTTCTTGG+AGG | 0.554381 | 6.4:-60976848 | MS.gene059601:CDS |
| GCAAGCATACCTCAGGAAAA+GGG | 0.554636 | 6.4:-60974066 | MS.gene059601:CDS |
| GGATGAATGTTTGGGTATGG+AGG | 0.564642 | 6.4:-60976789 | MS.gene059601:CDS |
| AAACAATTAAGGGAAGAAAC+CGG | 0.566124 | 6.4:-60974149 | MS.gene059601:CDS |
| ACATTACATCAAGAAACATA+AGG | 0.570939 | 6.4:-60975960 | MS.gene059601:intron |
| ACAGTCCATCATCCCTGCAC+CGG | 0.573161 | 6.4:+60974130 | None:intergenic |
| ACCATGATCCCGCACGAGAG+TGG | 0.588624 | 6.4:+60977327 | None:intergenic |
| AAAGCTCTTGCTGAAACAGA+AGG | 0.594868 | 6.4:-60974104 | MS.gene059601:CDS |
| CTATTGGCAGAATAAAGGAT+TGG | 0.602621 | 6.4:-60977296 | MS.gene059601:CDS |
| TGTCAGGAAATCAACAGTAG+TGG | 0.604083 | 6.4:-60974189 | MS.gene059601:intron |
| AAATAATCATAGGACTCTCG+AGG | 0.617319 | 6.4:+60976878 | None:intergenic |
| TCTTCCGGATTTCTTATCAG+CGG | 0.628603 | 6.4:+60974035 | None:intergenic |
| AAACTGAGTAGTTCAAACAA+TGG | 0.634764 | 6.4:+60976824 | None:intergenic |
| ATGTTGTGCAGTATTTACAA+TGG | 0.636010 | 6.4:-60977041 | MS.gene059601:intron |
| TAAGGGAAGAAACCGGTGCA+GGG | 0.636260 | 6.4:-60974142 | MS.gene059601:CDS |
| GAGGGACGTAGATTATCCAT+AGG | 0.638623 | 6.4:+60976897 | None:intergenic |
| AATAATCATAGGACTCTCGA+GGG | 0.657418 | 6.4:+60976879 | None:intergenic |
| GTTCCAGTCATTCTCAATGG+AGG | 0.660254 | 6.4:-60976944 | MS.gene059601:CDS |
| GTGGTAGCAAAAGGAAGTTG+AGG | 0.681777 | 6.4:+60977346 | None:intergenic |
| TGTCTGATTCTGTAACAACA+GGG | 0.689329 | 6.4:+60975980 | None:intergenic |
| TTGCTCATCATCAGGCACTG+TGG | 0.692354 | 6.4:-60978120 | MS.gene059601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTCAATTAAAGTTAA+TGG | - | chr6.4:60977390-60977409 | MS.gene059601:intron | 10.0% |
| !! | AATAACAATAATATCATTAT+TGG | - | chr6.4:60975096-60975115 | MS.gene059601:intron | 10.0% |
| !! | AAAAAAAAAAAAACACTTCA+TGG | + | chr6.4:60975620-60975639 | None:intergenic | 15.0% |
| !! | CAAACTTGTATATTTAAATT+TGG | - | chr6.4:60974771-60974790 | MS.gene059601:intron | 15.0% |
| !! | CAAATTTAAATATACAAGTT+TGG | + | chr6.4:60974773-60974792 | None:intergenic | 15.0% |
| !! | GAAACTTTAAATTAAGTTAA+AGG | + | chr6.4:60976974-60976993 | None:intergenic | 15.0% |
| !! | TAAGCTTAATAAAAATTCAT+GGG | + | chr6.4:60975733-60975752 | None:intergenic | 15.0% |
| !! | TATTATCTATGAATTATTCT+TGG | - | chr6.4:60977717-60977736 | MS.gene059601:intron | 15.0% |
| !!! | AAAATACAAACATATTTTCA+TGG | - | chr6.4:60975575-60975594 | MS.gene059601:intron | 15.0% |
| !!! | AAATACAAACATATTTTCAT+GGG | - | chr6.4:60975576-60975595 | MS.gene059601:intron | 15.0% |
| !!! | AAATATGGATATTTTAGAAT+GGG | + | chr6.4:60977434-60977453 | None:intergenic | 15.0% |
| !!! | ATGTAATGTATCTTTTAAAA+TGG | + | chr6.4:60977093-60977112 | None:intergenic | 15.0% |
| !!! | ATTGATTTTAGTTGTAATTT+CGG | + | chr6.4:60976315-60976334 | None:intergenic | 15.0% |
| !!! | CATTAACTTTATTTACTAAT+TGG | - | chr6.4:60977483-60977502 | MS.gene059601:intron | 15.0% |
| !!! | GATTTCTTTAAAATAATCAT+AGG | + | chr6.4:60975301-60975320 | None:intergenic | 15.0% |
| !!! | TAAATATGGATATTTTAGAA+TGG | + | chr6.4:60977435-60977454 | None:intergenic | 15.0% |
| !! | AACATGTATACAAATTTGAA+GGG | + | chr6.4:60977694-60977713 | None:intergenic | 20.0% |
| !! | ACAAATTAAGATATGTTAAG+TGG | - | chr6.4:60974101-60974120 | MS.gene059601:CDS | 20.0% |
| !! | CTAAGCTTAATAAAAATTCA+TGG | + | chr6.4:60975734-60975753 | None:intergenic | 20.0% |
| !! | TAACATGTATACAAATTTGA+AGG | + | chr6.4:60977695-60977714 | None:intergenic | 20.0% |
| !! | TATAAAGATAGCTTATACAT+AGG | - | chr6.4:60976507-60976526 | MS.gene059601:intron | 20.0% |
| !! | TCACATTCAATTCATATAAT+AGG | + | chr6.4:60975982-60976001 | None:intergenic | 20.0% |
| !! | TTAAGTGAAAGAAAAATAGT+AGG | + | chr6.4:60977545-60977564 | None:intergenic | 20.0% |
| !!! | AAAATATGTTTGTATTTTGC+AGG | + | chr6.4:60975573-60975592 | None:intergenic | 20.0% |
| !!! | CTATTATCTTTTCTCAAATT+GGG | + | chr6.4:60974354-60974373 | None:intergenic | 20.0% |
| !!! | CTTAATTTAAAGTTTCAAAC+AGG | - | chr6.4:60976978-60976997 | MS.gene059601:CDS | 20.0% |
| !!! | GATAGTTTACTATCTTTTTT+TGG | + | chr6.4:60977364-60977383 | None:intergenic | 20.0% |
| !!! | TCTATTATCTTTTCTCAAAT+TGG | + | chr6.4:60974355-60974374 | None:intergenic | 20.0% |
| !!! | TGAGAAAAGATAATAGATTT+TGG | - | chr6.4:60974358-60974377 | MS.gene059601:intron | 20.0% |
| ! | AAACTTAACCATTCAAGATT+CGG | + | chr6.4:60974391-60974410 | None:intergenic | 25.0% |
| ! | AACAATTAGCTCAATATTCA+AGG | + | chr6.4:60976077-60976096 | None:intergenic | 25.0% |
| ! | ACATTACATCAAGAAACATA+AGG | - | chr6.4:60976206-60976225 | MS.gene059601:intron | 25.0% |
| ! | ATCACAAAAATTCCTTAACT+CGG | - | chr6.4:60975466-60975485 | MS.gene059601:intron | 25.0% |
| ! | ATGCAATTGAAGATTTACAT+TGG | - | chr6.4:60974686-60974705 | MS.gene059601:intron | 25.0% |
| ! | ATTACATCTTAAGTTCATCA+AGG | - | chr6.4:60977106-60977125 | MS.gene059601:intron | 25.0% |
| ! | ATTGAAACTAACTTCCATAT+TGG | + | chr6.4:60975181-60975200 | None:intergenic | 25.0% |
| ! | ATTTAGTCATTTCTTCATGT+AGG | - | chr6.4:60977024-60977043 | MS.gene059601:CDS | 25.0% |
| ! | ATTTGTTTGAAAGACTCAAT+GGG | + | chr6.4:60974087-60974106 | None:intergenic | 25.0% |
| ! | CGAATTAGTATATCATTGAA+CGG | - | chr6.4:60977272-60977291 | MS.gene059601:CDS | 25.0% |
| ! | CTAAGATCAAATATGTTGTT+GGG | + | chr6.4:60974514-60974533 | None:intergenic | 25.0% |
| ! | CTAGAAAGATTAAATTTAGG+GGG | - | chr6.4:60974709-60974728 | MS.gene059601:intron | 25.0% |
| ! | GCTAGAAAGATTAAATTTAG+GGG | - | chr6.4:60974708-60974727 | MS.gene059601:intron | 25.0% |
| ! | GGCTAGAAAGATTAAATTTA+GGG | - | chr6.4:60974707-60974726 | MS.gene059601:intron | 25.0% |
| ! | TAAAACGAAAAACTACAACT+GGG | - | chr6.4:60976947-60976966 | MS.gene059601:CDS | 25.0% |
| ! | TACAATTTGAATGTAATCAG+AGG | + | chr6.4:60974989-60975008 | None:intergenic | 25.0% |
| ! | TATGCATTTGGTAAGTTAAT+CGG | + | chr6.4:60976379-60976398 | None:intergenic | 25.0% |
| ! | TCAAAATTCAAACTCAGTTA+TGG | + | chr6.4:60976012-60976031 | None:intergenic | 25.0% |
| ! | TGGCTAGAAAGATTAAATTT+AGG | - | chr6.4:60974706-60974725 | MS.gene059601:intron | 25.0% |
| ! | TGTCTACTTTGGTATAAATA+TGG | + | chr6.4:60977449-60977468 | None:intergenic | 25.0% |
| ! | TTCAATTCATATAATAGGCA+AGG | + | chr6.4:60975977-60975996 | None:intergenic | 25.0% |
| ! | TTTCTTAAAAGTCCAATAGA+TGG | + | chr6.4:60974445-60974464 | None:intergenic | 25.0% |
| !! | AACTATCGTGTTAATTTTGA+TGG | + | chr6.4:60977174-60977193 | None:intergenic | 25.0% |
| !! | AATTTGTTTGAAAGACTCAA+TGG | + | chr6.4:60974088-60974107 | None:intergenic | 25.0% |
| !! | ATTTTCAACTGTCCAAAATT+GGG | - | chr6.4:60974895-60974914 | MS.gene059601:intron | 25.0% |
| !! | CTCATTGGTTAAACAATTAA+GGG | - | chr6.4:60978007-60978026 | MS.gene059601:CDS | 25.0% |
| !! | CTTTTTGTGTTTCAAGAAAT+CGG | - | chr6.4:60975875-60975894 | MS.gene059601:intron | 25.0% |
| !! | TTGTTATTGTCATGCATAAT+AGG | + | chr6.4:60975084-60975103 | None:intergenic | 25.0% |
| !!! | AATAACAACTCTGTTTTTGT+TGG | - | chr6.4:60974307-60974326 | MS.gene059601:intron | 25.0% |
| !!! | AATTGTTTTAATGTTCTGTC+AGG | - | chr6.4:60977961-60977980 | MS.gene059601:CDS | 25.0% |
| !!! | ACTTTTTTCATATGCTATCA+TGG | + | chr6.4:60976444-60976463 | None:intergenic | 25.0% |
| !!! | ATACCAAAGTAGACATTTTT+TGG | - | chr6.4:60977454-60977473 | MS.gene059601:intron | 25.0% |
| AAACAATCAAAAAGTGACAG+TGG | - | chr6.4:60976109-60976128 | MS.gene059601:intron | 30.0% | |
| AAACTGAGTAGTTCAAACAA+TGG | + | chr6.4:60975345-60975364 | None:intergenic | 30.0% | |
| AACTTAACCATTCAAGATTC+GGG | + | chr6.4:60974390-60974409 | None:intergenic | 30.0% | |
| AAGAACTATTGGCAGAATAA+AGG | - | chr6.4:60974865-60974884 | MS.gene059601:intron | 30.0% | |
| ACAACTATGGAAAAACAAGA+AGG | - | chr6.4:60974207-60974226 | MS.gene059601:intron | 30.0% | |
| ATCAATTCTACAAGTTCGTT+GGG | + | chr6.4:60974166-60974185 | None:intergenic | 30.0% | |
| ATGTTATAAACTTGTGGAGT+TGG | - | chr6.4:60974417-60974436 | MS.gene059601:intron | 30.0% | |
| ATGTTGTGCAGTATTTACAA+TGG | - | chr6.4:60975125-60975144 | MS.gene059601:intron | 30.0% | |
| CAACAAATATTTGAAGACAG+AGG | + | chr6.4:60974596-60974615 | None:intergenic | 30.0% | |
| CAATAACATGCATATGTACA+TGG | - | chr6.4:60976348-60976367 | MS.gene059601:intron | 30.0% | |
| CCTTAATTGTTTAACCAATG+AGG | + | chr6.4:60978009-60978028 | None:intergenic | 30.0% | |
| CTAAAACGAAAAACTACAAC+TGG | - | chr6.4:60976946-60976965 | MS.gene059601:CDS | 30.0% | |
| GAATCTTGAATGGTTAAGTT+TGG | - | chr6.4:60974390-60974409 | MS.gene059601:intron | 30.0% | |
| GAATTCAAAGATATGTCAAC+AGG | + | chr6.4:60976679-60976698 | None:intergenic | 30.0% | |
| GCTAAGATCAAATATGTTGT+TGG | + | chr6.4:60974515-60974534 | None:intergenic | 30.0% | |
| GCTTATACATAGGTTATGTT+TGG | - | chr6.4:60976517-60976536 | MS.gene059601:intron | 30.0% | |
| GTATATCATTGAACGGATAT+AGG | - | chr6.4:60977279-60977298 | MS.gene059601:CDS | 30.0% | |
| GTCATAAACAGACAAAACTT+AGG | + | chr6.4:60977759-60977778 | None:intergenic | 30.0% | |
| TACATTCAAATTGTAACTCC+AGG | - | chr6.4:60974994-60975013 | MS.gene059601:intron | 30.0% | |
| TATATACACTCTCTTCACAA+AGG | - | chr6.4:60977569-60977588 | MS.gene059601:intron | 30.0% | |
| TCACCAAAAAATGTCTACTT+TGG | + | chr6.4:60977460-60977479 | None:intergenic | 30.0% | |
| TGTAAATCTTCAATTGCATC+AGG | + | chr6.4:60974685-60974704 | None:intergenic | 30.0% | |
| TGTATACAAATTTGAAGGGA+AGG | + | chr6.4:60977690-60977709 | None:intergenic | 30.0% | |
| TTAACACGAAAACAAGATCA+AGG | + | chr6.4:60977005-60977024 | None:intergenic | 30.0% | |
| TTGTGCACAGAAAGAAAATT+GGG | - | chr6.4:60977905-60977924 | MS.gene059601:intron | 30.0% | |
| ! | CATTTTCAACTGTCCAAAAT+TGG | - | chr6.4:60974894-60974913 | MS.gene059601:intron | 30.0% |
| ! | CCTCATTGGTTAAACAATTA+AGG | - | chr6.4:60978006-60978025 | MS.gene059601:CDS | 30.0% |
| ! | GATATAGGCTAATTTGAAGT+TGG | - | chr6.4:60977294-60977313 | MS.gene059601:CDS | 30.0% |
| ! | TCGCATTCGTATTTTACATA+TGG | - | chr6.4:60976266-60976285 | MS.gene059601:intron | 30.0% |
| ! | TTTCCATAACTGAGTTTTCA+TGG | - | chr6.4:60976051-60976070 | MS.gene059601:CDS | 30.0% |
| !! | TACTCAGTTTTGACATTGAT+GGG | - | chr6.4:60975355-60975374 | MS.gene059601:intron | 30.0% |
| !!! | CGTTTTAGAACTACTTACTT+TGG | + | chr6.4:60976934-60976953 | None:intergenic | 30.0% |
| !!! | GCATTTTCTGAAATTATCAC+CGG | + | chr6.4:60977851-60977870 | None:intergenic | 30.0% |
| AAATAATCATAGGACTCTCG+AGG | + | chr6.4:60975291-60975310 | None:intergenic | 35.0% | |
| AATAATCATAGGACTCTCGA+GGG | + | chr6.4:60975290-60975309 | None:intergenic | 35.0% | |
| AATTCGAATGTTTCACCGAT+CGG | + | chr6.4:60977258-60977277 | None:intergenic | 35.0% | |
| ACAAATTTGAAGGGAAGGTT+AGG | + | chr6.4:60977685-60977704 | None:intergenic | 35.0% | |
| ACAACTAACACCTACATATG+TGG | + | chr6.4:60977889-60977908 | None:intergenic | 35.0% | |
| AGTGTAACAAGAATGCACTA+AGG | + | chr6.4:60975771-60975790 | None:intergenic | 35.0% | |
| ATATAGTTGCTGCAATCCAT+GGG | + | chr6.4:60976740-60976759 | None:intergenic | 35.0% | |
| ATCAAAAAGTGACAGTGGAA+AGG | - | chr6.4:60976114-60976133 | MS.gene059601:intron | 35.0% | |
| ATCATGGTGAGAAGAACTAT+TGG | - | chr6.4:60974854-60974873 | MS.gene059601:intron | 35.0% | |
| ATCTTAGATTGCTCATCATC+AGG | - | chr6.4:60974038-60974057 | MS.gene059601:CDS | 35.0% | |
| ATGCTATCATGGATAGCTTA+TGG | + | chr6.4:60976433-60976452 | None:intergenic | 35.0% | |
| ATGTCTGATTCTGTAACAAC+AGG | + | chr6.4:60976190-60976209 | None:intergenic | 35.0% | |
| ATTGATGGGGATGAATGTTT+GGG | - | chr6.4:60975369-60975388 | MS.gene059601:intron | 35.0% | |
| CAAACAATCTAAGCTATGCA+AGG | + | chr6.4:60974623-60974642 | None:intergenic | 35.0% | |
| CAGGAAGTAAAATACCAAGT+TGG | - | chr6.4:60975013-60975032 | MS.gene059601:intron | 35.0% | |
| CGAACTTGTAGAATTGATCT+TGG | - | chr6.4:60974168-60974187 | MS.gene059601:CDS | 35.0% | |
| CTATTGGCAGAATAAAGGAT+TGG | - | chr6.4:60974870-60974889 | MS.gene059601:intron | 35.0% | |
| CTGAATGTAACCACATATGT+AGG | - | chr6.4:60977876-60977895 | MS.gene059601:intron | 35.0% | |
| CTTATTATCATGGGCCAATA+TGG | - | chr6.4:60975164-60975183 | MS.gene059601:intron | 35.0% | |
| CTTGAATGGTTAAGTTTGGA+AGG | - | chr6.4:60974394-60974413 | MS.gene059601:intron | 35.0% | |
| GAAATCAACAGTAGTGGTTT+CGG | - | chr6.4:60977983-60978002 | MS.gene059601:CDS | 35.0% | |
| GAAGCAACATTACACAACTA+TGG | - | chr6.4:60974194-60974213 | MS.gene059601:intron | 35.0% | |
| GAATGTAATCAGAGGATTGT+GGG | + | chr6.4:60974981-60975000 | None:intergenic | 35.0% | |
| GATCAATTCTACAAGTTCGT+TGG | + | chr6.4:60974167-60974186 | None:intergenic | 35.0% | |
| GCTAAGCTATCATATGCATT+TGG | + | chr6.4:60976391-60976410 | None:intergenic | 35.0% | |
| GGAAGGATGTTATAAACTTG+TGG | - | chr6.4:60974411-60974430 | MS.gene059601:intron | 35.0% | |
| GTTGTGCACAGAAAGAAAAT+TGG | - | chr6.4:60977904-60977923 | MS.gene059601:intron | 35.0% | |
| GTTGTTGACATTCTTAACTG+TGG | + | chr6.4:60975551-60975570 | None:intergenic | 35.0% | |
| TATCCATAGGTGACTTGATT+TGG | + | chr6.4:60975259-60975278 | None:intergenic | 35.0% | |
| TCGTTGGGATGAAAATTTGA+TGG | + | chr6.4:60974151-60974170 | None:intergenic | 35.0% | |
| TCTTAACTGTGGAGTAGTTA+TGG | + | chr6.4:60975540-60975559 | None:intergenic | 35.0% | |
| TGAATGTAATCAGAGGATTG+TGG | + | chr6.4:60974982-60975001 | None:intergenic | 35.0% | |
| TGACTTCAGTAGAAAAATCC+TGG | + | chr6.4:60976883-60976902 | None:intergenic | 35.0% | |
| TGATCCATTCTTAAACGCTT+TGG | + | chr6.4:60974569-60974588 | None:intergenic | 35.0% | |
| TGTCTGATTCTGTAACAACA+GGG | + | chr6.4:60976189-60976208 | None:intergenic | 35.0% | |
| TTGTGAAGTTGAACTCTTGT+AGG | + | chr6.4:60975440-60975459 | None:intergenic | 35.0% | |
| ! | AAAATGGTCAGCTACAGTTT+TGG | + | chr6.4:60977077-60977096 | None:intergenic | 35.0% |
| ! | AACTCGGAAGCAGAAAATTT+TGG | - | chr6.4:60975482-60975501 | MS.gene059601:intron | 35.0% |
| ! | AATTTTCTGCTTCCGAGTTA+AGG | + | chr6.4:60975481-60975500 | None:intergenic | 35.0% |
| ! | ATCCAGAGTGCTTATTATCA+TGG | - | chr6.4:60975154-60975173 | MS.gene059601:intron | 35.0% |
| ! | CAACTTGGTATTTTACTTCC+TGG | + | chr6.4:60975015-60975034 | None:intergenic | 35.0% |
| ! | GAAATCCAGTTTGAAGTTCT+TGG | - | chr6.4:60975315-60975334 | MS.gene059601:intron | 35.0% |
| ! | TCCAGAGTGCTTATTATCAT+GGG | - | chr6.4:60975155-60975174 | MS.gene059601:intron | 35.0% |
| ! | TGTTCCAAAGCGTTTAAGAA+TGG | - | chr6.4:60974562-60974581 | MS.gene059601:intron | 35.0% |
| ! | TTTGATGGCAAACACTTGAA+AGG | + | chr6.4:60974136-60974155 | None:intergenic | 35.0% |
| !! | ACTCAGTTTTGACATTGATG+GGG | - | chr6.4:60975356-60975375 | MS.gene059601:intron | 35.0% |
| !! | CTACTCAGTTTTGACATTGA+TGG | - | chr6.4:60975354-60975373 | MS.gene059601:intron | 35.0% |
| !!! | AAATCCTGGCTTTTTTCCTT+AGG | + | chr6.4:60976869-60976888 | None:intergenic | 35.0% |
| AAAGCTCTTGCTGAAACAGA+AGG | - | chr6.4:60978062-60978081 | MS.gene059601:CDS | 40.0% | |
| AACAGAAGGCGATCTTGAAA+AGG | - | chr6.4:60978076-60978095 | MS.gene059601:CDS | 40.0% | |
| AATTAAAGTTAATGGCCCCC+TGG | - | chr6.4:60977398-60977417 | MS.gene059601:intron | 40.0% | |
| AGAGTTCCAGTCATTCTCAA+TGG | - | chr6.4:60975219-60975238 | MS.gene059601:intron | 40.0% | |
| AGGCCATGAAAACTCAGTTA+TGG | + | chr6.4:60976057-60976076 | None:intergenic | 40.0% | |
| CAATCTAAGCTATGCAAGGA+TGG | + | chr6.4:60974619-60974638 | None:intergenic | 40.0% | |
| CATTGATGGGGATGAATGTT+TGG | - | chr6.4:60975368-60975387 | MS.gene059601:intron | 40.0% | |
| CTCTGATTGTTGATCCAACT+TGG | + | chr6.4:60975030-60975049 | None:intergenic | 40.0% | |
| CTTCAATTGCATCAGGAACT+TGG | + | chr6.4:60974678-60974697 | None:intergenic | 40.0% | |
| GATATAGTTGCTGCAATCCA+TGG | + | chr6.4:60976741-60976760 | None:intergenic | 40.0% | |
| GGAACTCTCAACAGTTTCAT+AGG | + | chr6.4:60975207-60975226 | None:intergenic | 40.0% | |
| GTGGATGATGCAATTCATTC+AGG | - | chr6.4:60974951-60974970 | MS.gene059601:intron | 40.0% | |
| TATAGTTGCTGCAATCCATG+GGG | + | chr6.4:60976739-60976758 | None:intergenic | 40.0% | |
| TCAAAGATATGTCAACAGGC+TGG | + | chr6.4:60976675-60976694 | None:intergenic | 40.0% | |
| TCATCCGCTGATAAGAAATC+CGG | - | chr6.4:60978127-60978146 | MS.gene059601:CDS | 40.0% | |
| TCCAACACAAACACAGACAT+TGG | - | chr6.4:60977803-60977822 | MS.gene059601:intron | 40.0% | |
| TCCAATGTCTGTGTTTGTGT+TGG | + | chr6.4:60977807-60977826 | None:intergenic | 40.0% | |
| TCTTCCGGATTTCTTATCAG+CGG | + | chr6.4:60978134-60978153 | None:intergenic | 40.0% | |
| TGACCAAATCAAGTCACCTA+TGG | - | chr6.4:60975253-60975272 | MS.gene059601:intron | 40.0% | |
| TGGATCAACAATCAGAGCAT+GGG | - | chr6.4:60975033-60975052 | MS.gene059601:intron | 40.0% | |
| TGTCAACAGAAGTCCAATTG+TGG | - | chr6.4:60977230-60977249 | MS.gene059601:intron | 40.0% | |
| TGTCAGGAAATCAACAGTAG+TGG | - | chr6.4:60977977-60977996 | MS.gene059601:CDS | 40.0% | |
| TTCTGTTGACAATGACAACG+AGG | + | chr6.4:60977221-60977240 | None:intergenic | 40.0% | |
| TTGGATCAACAATCAGAGCA+TGG | - | chr6.4:60975032-60975051 | MS.gene059601:intron | 40.0% | |
| TTGGGTGAGAAGGAATGTTA+CGG | - | chr6.4:60974913-60974932 | MS.gene059601:intron | 40.0% | |
| TTTCCTTGCTGAAGTTTGTG+AGG | + | chr6.4:60976906-60976925 | None:intergenic | 40.0% | |
| ! | ATCCAGTTTGAAGTTCTTGG+AGG | - | chr6.4:60975318-60975337 | MS.gene059601:intron | 40.0% |
| ! | CATTCCTTCTCACCCAATTT+TGG | + | chr6.4:60974910-60974929 | None:intergenic | 40.0% |
| ! | CGTCTGTGACGATTTTCAAT+TGG | - | chr6.4:60976615-60976634 | MS.gene059601:intron | 40.0% |
| !! | TTTGGAGCATTGCAAGTTGT+TGG | - | chr6.4:60974789-60974808 | MS.gene059601:intron | 40.0% |
| AAGCAACTTCAGGACGAAAC+TGG | - | chr6.4:60976774-60976793 | MS.gene059601:CDS | 45.0% | |
| AATGCTCTATCAGAGAGTCG+AGG | - | chr6.4:60976819-60976838 | MS.gene059601:CDS | 45.0% | |
| AATGGGCAAAACTACACCAG+GGG | + | chr6.4:60977417-60977436 | None:intergenic | 45.0% | |
| AGAATGGGCAAAACTACACC+AGG | + | chr6.4:60977419-60977438 | None:intergenic | 45.0% | |
| AGACCTCCATTGAGAATGAC+TGG | + | chr6.4:60975228-60975247 | None:intergenic | 45.0% | |
| AGCACTTGTGAAGCAACTTC+AGG | - | chr6.4:60976764-60976783 | MS.gene059601:intron | 45.0% | |
| AGCTCCTAAGGAAAAAAGCC+AGG | - | chr6.4:60976862-60976881 | MS.gene059601:CDS | 45.0% | |
| AGTAGTTATGGTTGCGGTTG+TGG | + | chr6.4:60975528-60975547 | None:intergenic | 45.0% | |
| ATAGTTGCTGCAATCCATGG+GGG | + | chr6.4:60976738-60976757 | None:intergenic | 45.0% | |
| CAAGTTTGGAAAGCTTCCTC+AGG | + | chr6.4:60974759-60974778 | None:intergenic | 45.0% | |
| CAATTGGATATCTTGCCCCT+GGG | - | chr6.4:60976631-60976650 | MS.gene059601:intron | 45.0% | |
| CGAAACTGGAACTGGAATGA+TGG | - | chr6.4:60976788-60976807 | MS.gene059601:CDS | 45.0% | |
| CTGTCCAAAATTGGGTGAGA+AGG | - | chr6.4:60974903-60974922 | MS.gene059601:intron | 45.0% | |
| CTGTGGAGTAGTTATGGTTG+CGG | + | chr6.4:60975534-60975553 | None:intergenic | 45.0% | |
| GAATGGGCAAAACTACACCA+GGG | + | chr6.4:60977418-60977437 | None:intergenic | 45.0% | |
| GACCTCCAAGAACTTCAAAC+TGG | + | chr6.4:60975323-60975342 | None:intergenic | 45.0% | |
| GAGAGTTCCCGAATCTTGAA+TGG | - | chr6.4:60974380-60974399 | MS.gene059601:intron | 45.0% | |
| GAGGGACGTAGATTATCCAT+AGG | + | chr6.4:60975272-60975291 | None:intergenic | 45.0% | |
| GATTCTGTAACAACAGGGCT+AGG | + | chr6.4:60976184-60976203 | None:intergenic | 45.0% | |
| GCAAGCATACCTCAGGAAAA+GGG | - | chr6.4:60978100-60978119 | MS.gene059601:CDS | 45.0% | |
| GCCCATGATAATAAGCACTC+TGG | + | chr6.4:60975159-60975178 | None:intergenic | 45.0% | |
| GGATGAATGTTTGGGTATGG+AGG | - | chr6.4:60975377-60975396 | MS.gene059601:intron | 45.0% | |
| GTGGAGTTGGATCCATCTAT+TGG | - | chr6.4:60974430-60974449 | MS.gene059601:intron | 45.0% | |
| GTGGTAGCAAAAGGAAGTTG+AGG | + | chr6.4:60974823-60974842 | None:intergenic | 45.0% | |
| GTTCCAGTCATTCTCAATGG+AGG | - | chr6.4:60975222-60975241 | MS.gene059601:intron | 45.0% | |
| TCAATTGGATATCTTGCCCC+TGG | - | chr6.4:60976630-60976649 | MS.gene059601:intron | 45.0% | |
| TCACCTCACAAACTTCAGCA+AGG | - | chr6.4:60976900-60976919 | MS.gene059601:CDS | 45.0% | |
| TCGTCACAGACGATTCTGTT+TGG | + | chr6.4:60976607-60976626 | None:intergenic | 45.0% | |
| TGAAGTTGCTTCACAAGTGC+TGG | + | chr6.4:60976765-60976784 | None:intergenic | 45.0% | |
| TGGGGATGAATGTTTGGGTA+TGG | - | chr6.4:60975374-60975393 | MS.gene059601:intron | 45.0% | |
| ! | ACGGTAGCATGACATTTTCG+TGG | - | chr6.4:60974932-60974951 | MS.gene059601:intron | 45.0% |
| !! | AGTCCAATTGTGGTACCGAT+CGG | - | chr6.4:60977240-60977259 | MS.gene059601:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTATG+TGG | - | chr6.4:60975630-60975649 | MS.gene059601:intron | 5.0% |
| AAACTCCCAGTTCTACCCAG+GGG | + | chr6.4:60976649-60976668 | None:intergenic | 50.0% | |
| AGTAGTGGTTTCGGCCTCAT+TGG | - | chr6.4:60977992-60978011 | MS.gene059601:CDS | 50.0% | |
| ATGGGCAAAACTACACCAGG+GGG | + | chr6.4:60977416-60977435 | None:intergenic | 50.0% | |
| CAAACTCCCAGTTCTACCCA+GGG | + | chr6.4:60976650-60976669 | None:intergenic | 50.0% | |
| CGACACTAACATGTCGACAC+CGG | - | chr6.4:60977829-60977848 | MS.gene059601:intron | 50.0% | |
| CGCAAGCATACCTCAGGAAA+AGG | - | chr6.4:60978099-60978118 | MS.gene059601:CDS | 50.0% | |
| CTTCAGGACGAAACTGGAAC+TGG | - | chr6.4:60976780-60976799 | MS.gene059601:CDS | 50.0% | |
| GGTATGGAGGTGAAGAGTTG+CGG | - | chr6.4:60975390-60975409 | MS.gene059601:intron | 50.0% | |
| GTATGGAGGTGAAGAGTTGC+GGG | - | chr6.4:60975391-60975410 | MS.gene059601:intron | 50.0% | |
| TAGTTGCTGCAATCCATGGG+GGG | + | chr6.4:60976737-60976756 | None:intergenic | 50.0% | |
| TCAAACTCCCAGTTCTACCC+AGG | + | chr6.4:60976651-60976670 | None:intergenic | 50.0% | |
| TCAAAGCACACGAGCTCCTA+AGG | - | chr6.4:60976850-60976869 | MS.gene059601:CDS | 50.0% | |
| TCACCGATCGGTACCACAAT+TGG | + | chr6.4:60977246-60977265 | None:intergenic | 50.0% | |
| TCGCTATCTGTCTCAGTTGC+AGG | + | chr6.4:60976151-60976170 | None:intergenic | 50.0% | |
| TTGGAAAGCTTCCTCAGGCT+AGG | + | chr6.4:60974754-60974773 | None:intergenic | 50.0% | |
| TTGTGACACTACCTAGCCTG+AGG | - | chr6.4:60974740-60974759 | MS.gene059601:intron | 50.0% | |
| ! | AAAAGGCGCAAGCATACCTC+AGG | - | chr6.4:60978093-60978112 | MS.gene059601:CDS | 50.0% |
| ! | AGGCACTGTGGACATATCTC+AGG | - | chr6.4:60974058-60974077 | MS.gene059601:CDS | 50.0% |
| ! | CTTTTGCTACCACTCTCGTG+CGG | - | chr6.4:60974830-60974849 | MS.gene059601:intron | 50.0% |
| ! | GAAGAGTTGCGGGTATCGTT+GGG | - | chr6.4:60975401-60975420 | MS.gene059601:intron | 50.0% |
| ! | GATGAGAGACCCTTTTCCTG+AGG | + | chr6.4:60978112-60978131 | None:intergenic | 50.0% |
| ! | TGAAGAGTTGCGGGTATCGT+TGG | - | chr6.4:60975400-60975419 | MS.gene059601:intron | 50.0% |
| ! | TTGCTCATCATCAGGCACTG+TGG | - | chr6.4:60974046-60974065 | MS.gene059601:CDS | 50.0% |
| ! | TTTTGCTACCACTCTCGTGC+GGG | - | chr6.4:60974831-60974850 | MS.gene059601:intron | 50.0% |
| AATGTCTGTTTCGCCCCCCA+TGG | - | chr6.4:60976721-60976740 | MS.gene059601:intron | 55.0% | |
| ACAGTCCATCATCCCTGCAC+CGG | + | chr6.4:60978039-60978058 | None:intergenic | 55.0% | |
| AGAAACCGGTGCAGGGATGA+TGG | - | chr6.4:60978031-60978050 | MS.gene059601:CDS | 55.0% | |
| ATCTTGCCCCTGGGTAGAAC+TGG | - | chr6.4:60976640-60976659 | MS.gene059601:intron | 55.0% | |
| CGCACGAGAGTGGTAGCAAA+AGG | + | chr6.4:60974832-60974851 | None:intergenic | 55.0% | |
| TCTTGCCCCTGGGTAGAACT+GGG | - | chr6.4:60976641-60976660 | MS.gene059601:intron | 55.0% | |
| ACCACTCTCGTGCGGGATCA+TGG | - | chr6.4:60974838-60974857 | MS.gene059601:intron | 60.0% | |
| ACCATGATCCCGCACGAGAG+TGG | + | chr6.4:60974842-60974861 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 60974031 | 60978157 | 60974031 | ID=MS.gene059601 |
| chr6.4 | mRNA | 60974031 | 60978157 | 60974031 | ID=MS.gene059601.t1;Parent=MS.gene059601 |
| chr6.4 | exon | 60977960 | 60978157 | 60977960 | ID=MS.gene059601.t1.exon1;Parent=MS.gene059601.t1 |
| chr6.4 | CDS | 60977960 | 60978157 | 60977960 | ID=cds.MS.gene059601.t1;Parent=MS.gene059601.t1 |
| chr6.4 | exon | 60977272 | 60977392 | 60977272 | ID=MS.gene059601.t1.exon2;Parent=MS.gene059601.t1 |
| chr6.4 | CDS | 60977272 | 60977392 | 60977272 | ID=cds.MS.gene059601.t1;Parent=MS.gene059601.t1 |
| chr6.4 | exon | 60976766 | 60977052 | 60976766 | ID=MS.gene059601.t1.exon3;Parent=MS.gene059601.t1 |
| chr6.4 | CDS | 60976766 | 60977052 | 60976766 | ID=cds.MS.gene059601.t1;Parent=MS.gene059601.t1 |
| chr6.4 | exon | 60975961 | 60976100 | 60975961 | ID=MS.gene059601.t1.exon4;Parent=MS.gene059601.t1 |
| chr6.4 | CDS | 60975961 | 60976100 | 60975961 | ID=cds.MS.gene059601.t1;Parent=MS.gene059601.t1 |
| chr6.4 | exon | 60974031 | 60974205 | 60974031 | ID=MS.gene059601.t1.exon5;Parent=MS.gene059601.t1 |
| chr6.4 | CDS | 60974031 | 60974205 | 60974031 | ID=cds.MS.gene059601.t1;Parent=MS.gene059601.t1 |
| Gene Sequence |
| Protein sequence |
