Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69257.t1 | XP_003600855.1 | 92.4 | 290 | 18 | 1 | 102 | 391 | 92 | 377 | 3.90E-113 | 418.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69257.t1 | Q9SB42 | 35.5 | 234 | 136 | 7 | 163 | 387 | 141 | 368 | 6.2e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69257.t1 | G7JAP2 | 92.4 | 290 | 18 | 1 | 102 | 391 | 92 | 377 | 2.8e-113 | 418.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69257.t1 | TF | GeBP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene69257 | 0.819638 | 1.05E-52 | -1.69E-46 |
| MS.gene049271 | MS.gene69257 | 0.823249 | 1.53E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene69257 | 0.82189 | 3.17E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene69257 | 0.845444 | 4.05E-59 | -1.69E-46 |
| MS.gene049824 | MS.gene69257 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene69257 | 0.81201 | 5.26E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene69257 | 0.823068 | 1.69E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene69257 | 0.83718 | 6.05E-57 | -1.69E-46 |
| MS.gene050156 | MS.gene69257 | 0.801766 | 7.71E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene69257 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene69257 | 0.811441 | 6.99E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene69257 | 0.801921 | 7.17E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene69257 | 0.822068 | 2.89E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene69257 | 0.827573 | 1.45E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene69257 | 0.819036 | 1.43E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene69257 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene69257 | 0.828091 | 1.09E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene69257 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene69257 | 0.82425 | 8.94E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene69257 | 0.844944 | 5.52E-59 | -1.69E-46 |
| MS.gene052611 | MS.gene69257 | 0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene052867 | MS.gene69257 | 0.811529 | 6.69E-51 | -1.69E-46 |
| MS.gene053054 | MS.gene69257 | -0.822891 | 1.86E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene69257 | 0.84832 | 6.61E-60 | -1.69E-46 |
| MS.gene053599 | MS.gene69257 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene69257 | 0.816507 | 5.34E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene69257 | 0.84251 | 2.47E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene69257 | 0.816188 | 6.29E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene69257 | 0.807598 | 4.67E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene69257 | -0.810142 | 1.34E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene69257 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene69257 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene69257 | 0.843048 | 1.78E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene69257 | 0.813141 | 2.97E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene69257 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene69257 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene056173 | MS.gene69257 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene69257 | 0.855161 | 7.60E-62 | -1.69E-46 |
| MS.gene056498 | MS.gene69257 | 0.818582 | 1.82E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene69257 | 0.825878 | 3.69E-54 | -1.69E-46 |
| MS.gene056643 | MS.gene69257 | 0.811933 | 5.46E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene69257 | 0.828442 | 8.97E-55 | -1.69E-46 |
| MS.gene057414 | MS.gene69257 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene69257 | 0.835312 | 1.81E-56 | -1.69E-46 |
| MS.gene058037 | MS.gene69257 | 0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene69257 | 0.852712 | 3.86E-61 | -1.69E-46 |
| MS.gene05954 | MS.gene69257 | 0.83969 | 1.36E-57 | -1.69E-46 |
| MS.gene059625 | MS.gene69257 | 0.809408 | 1.92E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene69257 | 0.821477 | 3.95E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene69257 | 0.814469 | 1.52E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene69257 | 0.833903 | 4.08E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene69257 | 0.821842 | 3.26E-53 | -1.69E-46 |
| MS.gene060690 | MS.gene69257 | 0.81328 | 2.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69257.t1 | MTR_3g070120 | 87.980 | 391 | 33 | 3 | 1 | 391 | 1 | 377 | 0.0 | 572 |
| MS.gene69257.t1 | MTR_2g010790 | 34.943 | 352 | 175 | 13 | 57 | 376 | 76 | 405 | 2.81e-38 | 142 |
| MS.gene69257.t1 | MTR_1g081580 | 35.294 | 119 | 73 | 2 | 138 | 253 | 73 | 190 | 1.31e-14 | 75.1 |
| MS.gene69257.t1 | MTR_7g114600 | 30.435 | 138 | 87 | 3 | 163 | 291 | 111 | 248 | 1.54e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69257.t1 | AT4G25210 | 35.144 | 313 | 163 | 13 | 96 | 387 | 75 | 368 | 1.24e-26 | 109 |
| MS.gene69257.t1 | AT1G11510 | 36.150 | 213 | 114 | 6 | 59 | 263 | 40 | 238 | 4.94e-25 | 105 |
| MS.gene69257.t1 | AT4G00390 | 36.179 | 246 | 116 | 11 | 61 | 292 | 56 | 274 | 6.19e-25 | 105 |
| MS.gene69257.t1 | AT1G61730 | 34.314 | 204 | 102 | 6 | 75 | 261 | 66 | 254 | 3.99e-23 | 100 |
| MS.gene69257.t1 | AT1G11510 | 43.182 | 132 | 64 | 3 | 135 | 263 | 86 | 209 | 1.46e-21 | 94.7 |
| MS.gene69257.t1 | AT4G01260 | 36.757 | 185 | 96 | 7 | 86 | 258 | 33 | 208 | 6.21e-21 | 93.2 |
| MS.gene69257.t1 | AT4G00250 | 31.356 | 236 | 131 | 6 | 52 | 282 | 25 | 234 | 8.51e-18 | 84.0 |
| MS.gene69257.t1 | AT2G25650 | 30.573 | 157 | 101 | 2 | 165 | 318 | 67 | 218 | 1.79e-15 | 77.8 |
| MS.gene69257.t1 | AT5G14280 | 41.748 | 103 | 55 | 2 | 156 | 253 | 52 | 154 | 5.55e-15 | 75.5 |
| MS.gene69257.t1 | AT1G44810 | 31.548 | 168 | 88 | 5 | 87 | 254 | 70 | 210 | 1.51e-14 | 73.9 |
| MS.gene69257.t1 | AT1G66420 | 30.882 | 136 | 90 | 1 | 119 | 254 | 43 | 174 | 2.14e-14 | 73.6 |
| MS.gene69257.t1 | AT4G00238 | 31.737 | 167 | 109 | 3 | 64 | 225 | 36 | 202 | 2.17e-14 | 74.3 |
| MS.gene69257.t1 | AT4G00270 | 33.929 | 112 | 71 | 1 | 165 | 273 | 66 | 177 | 2.44e-13 | 70.5 |
| MS.gene69257.t1 | AT2G01370 | 36.458 | 96 | 60 | 1 | 159 | 253 | 76 | 171 | 9.17e-13 | 68.2 |
| MS.gene69257.t1 | AT5G28040 | 30.387 | 181 | 101 | 8 | 108 | 274 | 79 | 248 | 1.14e-12 | 69.3 |
| MS.gene69257.t1 | AT5G28040 | 30.387 | 181 | 101 | 8 | 108 | 274 | 79 | 248 | 1.14e-12 | 69.3 |
| MS.gene69257.t1 | AT3G04930 | 35.577 | 104 | 57 | 5 | 163 | 258 | 138 | 239 | 1.68e-11 | 65.9 |
| MS.gene69257.t1 | AT3G04930 | 35.714 | 98 | 54 | 4 | 163 | 253 | 138 | 233 | 2.06e-11 | 65.9 |
Find 94 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCTGCTGAATTGTTCT+TGG | 0.198495 | 3.2:+63861018 | None:intergenic |
| TCTTCTGCTGAATTGTTCTT+GGG | 0.288899 | 3.2:+63861019 | None:intergenic |
| GGAGGATACTGGTTTGAGTT+TGG | 0.293728 | 3.2:-63860288 | MS.gene69257:CDS |
| TTGAGCTTTCGAAGAAGATT+TGG | 0.299730 | 3.2:-63860496 | MS.gene69257:CDS |
| GTTGATTTCACTGCCAAATC+AGG | 0.313777 | 3.2:-63860695 | MS.gene69257:CDS |
| GGCAGGTGCTATGGAGGATT+TGG | 0.320231 | 3.2:+63860904 | None:intergenic |
| TGAGCTTTCGAAGAAGATTT+GGG | 0.331143 | 3.2:-63860495 | MS.gene69257:CDS |
| AACAGCCGGTTCCTTCTTCC+CGG | 0.333108 | 3.2:+63860415 | None:intergenic |
| TGCTGAATTGTTCTTGGGGT+TGG | 0.342217 | 3.2:+63861024 | None:intergenic |
| AGCGAGGACAACTAAGAAAT+TGG | 0.352971 | 3.2:-63860378 | MS.gene69257:CDS |
| TAGGGTTTGTTCAATTGGTT+TGG | 0.359336 | 3.2:+63860937 | None:intergenic |
| AAAACCACCAATGGTGAATC+AGG | 0.369727 | 3.2:+63860347 | None:intergenic |
| ATCTTTGACGGCGGCGGTGG+CGG | 0.371949 | 3.2:+63861216 | None:intergenic |
| AGTCGGATCATTCCCTGATT+TGG | 0.377045 | 3.2:+63860682 | None:intergenic |
| AGGTCGTTTGGTTCCAGATC+TGG | 0.378244 | 3.2:+63860883 | None:intergenic |
| TCCATAGCACCTGCCAGATC+TGG | 0.379820 | 3.2:-63860896 | MS.gene69257:CDS |
| GAATTCATCATCAAGCCATT+AGG | 0.384003 | 3.2:-63860078 | None:intergenic |
| ACTTTGTCTTCTTGCGGTGG+TGG | 0.394146 | 3.2:+63861190 | None:intergenic |
| TAAGTACAGAATTGCTGAAA+TGG | 0.402227 | 3.2:-63860162 | MS.gene69257:CDS |
| CTCTTCACCACATCTATAAC+CGG | 0.406554 | 3.2:+63860239 | None:intergenic |
| TCCAGATCTGGCAGGTGCTA+TGG | 0.412895 | 3.2:+63860895 | None:intergenic |
| GACGAGGTTGCAATTCTTCA+AGG | 0.415419 | 3.2:-63860722 | MS.gene69257:CDS |
| CTTCTTCTTGTTCTTCTCCT+CGG | 0.418262 | 3.2:+63860817 | None:intergenic |
| GCTTGATCAATTGCGCGATA+AGG | 0.420706 | 3.2:-63860603 | MS.gene69257:CDS |
| GGAATCAAAGAAGGGTGAAT+TGG | 0.425083 | 3.2:-63860198 | MS.gene69257:CDS |
| ATTCAATGCATCCCTTATCT+TGG | 0.427946 | 3.2:+63860097 | None:intergenic |
| CTCCTCTATCGGCTTCGAAA+AGG | 0.439182 | 3.2:+63860526 | None:intergenic |
| GGGAAAGTTAACGGGAAGGC+CGG | 0.439618 | 3.2:-63860434 | MS.gene69257:CDS |
| GAAGAGAATGGGAAAGTTAA+CGG | 0.440062 | 3.2:-63860443 | MS.gene69257:CDS |
| CGGTGGTGGGTCATCTTTGA+CGG | 0.441432 | 3.2:+63861204 | None:intergenic |
| GTCATCTTTGACGGCGGCGG+TGG | 0.443376 | 3.2:+63861213 | None:intergenic |
| CTTTGTCTTCTTGCGGTGGT+GGG | 0.443833 | 3.2:+63861191 | None:intergenic |
| GAAGGCCGGGAAGAAGGAAC+CGG | 0.446417 | 3.2:-63860420 | MS.gene69257:CDS |
| TTGTTATTGTCATCCTCCTC+CGG | 0.454682 | 3.2:+63860785 | None:intergenic |
| ATTGAACAAACCCTAAAATC+AGG | 0.464800 | 3.2:-63860929 | MS.gene69257:CDS |
| GCTGCTGCTTTCTTAACAGC+CGG | 0.473003 | 3.2:+63860401 | None:intergenic |
| GGTAATGGAAAGGAGGATAC+TGG | 0.473524 | 3.2:-63860299 | MS.gene69257:CDS |
| AGGAAGGTGGACCGTGGTAA+TGG | 0.477602 | 3.2:-63860314 | MS.gene69257:CDS |
| TTGAGAATAAATTGAAGAGT+GGG | 0.477725 | 3.2:-63860559 | MS.gene69257:CDS |
| AGGAAACAGCTACCAAGATA+AGG | 0.482258 | 3.2:-63860109 | MS.gene69257:CDS |
| GGAAACAGCTACCAAGATAA+GGG | 0.493019 | 3.2:-63860108 | MS.gene69257:CDS |
| ATCAATTGCGCGATAAGGTA+CGG | 0.494109 | 3.2:-63860598 | MS.gene69257:CDS |
| TTTGAGAATAAATTGAAGAG+TGG | 0.503153 | 3.2:-63860560 | MS.gene69257:CDS |
| GGAAAGTTAACGGGAAGGCC+GGG | 0.508248 | 3.2:-63860433 | MS.gene69257:CDS |
| CGAGGAGAAGAACAAGAAGA+AGG | 0.508520 | 3.2:-63860816 | MS.gene69257:CDS |
| CAAGAAGAAGGAGAAAGAGC+CGG | 0.511218 | 3.2:-63860804 | MS.gene69257:CDS |
| GTCGATCGAGGAATCAAAGA+AGG | 0.512248 | 3.2:-63860207 | MS.gene69257:CDS |
| AAGAGAATGGGAAAGTTAAC+GGG | 0.512491 | 3.2:-63860442 | MS.gene69257:CDS |
| TCGAAGAAGATTTGGGGTGG+TGG | 0.514670 | 3.2:-63860488 | MS.gene69257:CDS |
| TTAATGAAGGTGAAGAGAAT+GGG | 0.515992 | 3.2:-63860454 | MS.gene69257:CDS |
| CTTCTGCTGAATTGTTCTTG+GGG | 0.519445 | 3.2:+63861020 | None:intergenic |
| GGTTATAGATGTGGTGAAGA+GGG | 0.520148 | 3.2:-63860237 | MS.gene69257:CDS |
| AGATGTGGTGAAGAGGGGAG+TGG | 0.520696 | 3.2:-63860231 | MS.gene69257:CDS |
| TGGGTCATCTTTGACGGCGG+CGG | 0.520727 | 3.2:+63861210 | None:intergenic |
| TCAAACATTGTCTCCTCTAT+CGG | 0.521265 | 3.2:+63860515 | None:intergenic |
| GTTAATGAAGGTGAAGAGAA+TGG | 0.522303 | 3.2:-63860455 | MS.gene69257:CDS |
| TAACGGGAAGGCCGGGAAGA+AGG | 0.523132 | 3.2:-63860426 | MS.gene69257:CDS |
| GGAGCCTGATTCACCATTGG+TGG | 0.527617 | 3.2:-63860351 | MS.gene69257:CDS |
| GAAGGAGAAAGAGCCGGAGG+AGG | 0.534312 | 3.2:-63860798 | MS.gene69257:CDS |
| GCGATAAGGTACGGAGGTTG+AGG | 0.536666 | 3.2:-63860589 | MS.gene69257:CDS |
| AAAGCTGATAAATGCTTAGT+CGG | 0.540393 | 3.2:+63860665 | None:intergenic |
| TTGATTTCACTGCCAAATCA+GGG | 0.541120 | 3.2:-63860694 | MS.gene69257:CDS |
| GTTTATGCAGAAAACTGAGT+TGG | 0.544369 | 3.2:-63860135 | MS.gene69257:CDS |
| CGGTTATAGATGTGGTGAAG+AGG | 0.554197 | 3.2:-63860238 | MS.gene69257:CDS |
| GCAGAAAACTGAGTTGGCTA+AGG | 0.559486 | 3.2:-63860129 | MS.gene69257:CDS |
| ACGAGGTTGCAATTCTTCAA+GGG | 0.567255 | 3.2:-63860721 | MS.gene69257:CDS |
| GACAACTAAGAAATTGGTGA+TGG | 0.569729 | 3.2:-63860372 | MS.gene69257:CDS |
| TGTTCGACTTTGTCTTCTTG+CGG | 0.570369 | 3.2:+63861184 | None:intergenic |
| CGTTTGGTTCCAGATCTGGC+AGG | 0.578077 | 3.2:+63860887 | None:intergenic |
| GAAGAAACTTCATCAGAAGC+AGG | 0.578349 | 3.2:-63861145 | MS.gene69257:CDS |
| GATGGAGCCTGATTCACCAT+TGG | 0.580880 | 3.2:-63860354 | MS.gene69257:CDS |
| GAAGAAGGAGAAAGAGCCGG+AGG | 0.582776 | 3.2:-63860801 | MS.gene69257:CDS |
| TGGTGGGTCATCTTTGACGG+CGG | 0.588434 | 3.2:+63861207 | None:intergenic |
| GAAGCAGGTTCTTCATCTGA+AGG | 0.592880 | 3.2:-63861130 | MS.gene69257:CDS |
| CTTTCGAAGAAGATTTGGGG+TGG | 0.593102 | 3.2:-63860491 | MS.gene69257:CDS |
| GGTAAAGTTGATGTTAATGA+AGG | 0.597345 | 3.2:-63860467 | MS.gene69257:CDS |
| TCGACTTTGTCTTCTTGCGG+TGG | 0.603109 | 3.2:+63861187 | None:intergenic |
| AGATCTGGCAGGTGCTATGG+AGG | 0.603253 | 3.2:+63860898 | None:intergenic |
| TTTGAAGGAAACTAGGAAGG+TGG | 0.604939 | 3.2:-63860327 | MS.gene69257:CDS |
| GTTTCCTTCAAAACCACCAA+TGG | 0.618878 | 3.2:+63860338 | None:intergenic |
| GTTATAGATGTGGTGAAGAG+GGG | 0.624491 | 3.2:-63860236 | MS.gene69257:CDS |
| GGTGGACCGTGGTAATGGAA+AGG | 0.637313 | 3.2:-63860309 | MS.gene69257:CDS |
| TATCCTCCTTTCCATTACCA+CGG | 0.639577 | 3.2:+63860303 | None:intergenic |
| GAGCTTTCGAAGAAGATTTG+GGG | 0.640229 | 3.2:-63860494 | MS.gene69257:CDS |
| GAGGGGAGTGGAGTCGATCG+AGG | 0.647001 | 3.2:-63860219 | MS.gene69257:CDS |
| TCTATCGGCTTCGAAAAGGT+CGG | 0.651727 | 3.2:+63860530 | None:intergenic |
| TCGATCGAGGAATCAAAGAA+GGG | 0.651934 | 3.2:-63860206 | MS.gene69257:CDS |
| GGACCGTGGTAATGGAAAGG+AGG | 0.655825 | 3.2:-63860306 | MS.gene69257:CDS |
| GAATGGGAAAGTTAACGGGA+AGG | 0.660067 | 3.2:-63860438 | MS.gene69257:CDS |
| GCAGGTTCTTCATCTGAAGG+AGG | 0.673317 | 3.2:-63861127 | MS.gene69257:CDS |
| TTAAGAAAGCAGCAGCAGCG+AGG | 0.716912 | 3.2:-63860394 | MS.gene69257:CDS |
| GAATAAGAAGAAAACAACCG+AGG | 0.718310 | 3.2:-63860834 | MS.gene69257:CDS |
| GAAACTAGGAAGGTGGACCG+TGG | 0.720287 | 3.2:-63860320 | MS.gene69257:CDS |
| AATTGCGCGATAAGGTACGG+AGG | 0.745566 | 3.2:-63860595 | MS.gene69257:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTACCAAATTGTGAAAAAGT+CGG | - | chr3.2:63860669-63860688 | MS.gene69257:CDS | 25.0% |
| ! | TTGAGAATAAATTGAAGAGT+GGG | - | chr3.2:63860752-63860771 | MS.gene69257:CDS | 25.0% |
| ! | TTTGAGAATAAATTGAAGAG+TGG | - | chr3.2:63860751-63860770 | MS.gene69257:CDS | 25.0% |
| AAAGCTGATAAATGCTTAGT+CGG | + | chr3.2:63860649-63860668 | None:intergenic | 30.0% | |
| ATTGAACAAACCCTAAAATC+AGG | - | chr3.2:63860382-63860401 | MS.gene69257:CDS | 30.0% | |
| TAAGTACAGAATTGCTGAAA+TGG | - | chr3.2:63861149-63861168 | MS.gene69257:CDS | 30.0% | |
| TTAATGAAGGTGAAGAGAAT+GGG | - | chr3.2:63860857-63860876 | MS.gene69257:CDS | 30.0% | |
| ! | TGAAATGATTCATTTTGAGC+CGG | - | chr3.2:63861053-63861072 | MS.gene69257:CDS | 30.0% |
| !! | GGTAAAGTTGATGTTAATGA+AGG | - | chr3.2:63860844-63860863 | MS.gene69257:CDS | 30.0% |
| !!! | GATTTTAGGGTTTGTTCAAT+TGG | + | chr3.2:63860382-63860401 | None:intergenic | 30.0% |
| !!! | TGTTCAATTGGTTTGGTTTT+TGG | + | chr3.2:63860370-63860389 | None:intergenic | 30.0% |
| AAGAGAATGGGAAAGTTAAC+GGG | - | chr3.2:63860869-63860888 | MS.gene69257:CDS | 35.0% | |
| ATCTTCTGCTGAATTGTTCT+TGG | + | chr3.2:63860296-63860315 | None:intergenic | 35.0% | |
| ATTCAATGCATCCCTTATCT+TGG | + | chr3.2:63861217-63861236 | None:intergenic | 35.0% | |
| GAAGAGAATGGGAAAGTTAA+CGG | - | chr3.2:63860868-63860887 | MS.gene69257:CDS | 35.0% | |
| GAATAAGAAGAAAACAACCG+AGG | - | chr3.2:63860477-63860496 | MS.gene69257:CDS | 35.0% | |
| GACAACTAAGAAATTGGTGA+TGG | - | chr3.2:63860939-63860958 | MS.gene69257:CDS | 35.0% | |
| GTTAATGAAGGTGAAGAGAA+TGG | - | chr3.2:63860856-63860875 | MS.gene69257:CDS | 35.0% | |
| GTTTATGCAGAAAACTGAGT+TGG | - | chr3.2:63861176-63861195 | MS.gene69257:CDS | 35.0% | |
| TCAAACATTGTCTCCTCTAT+CGG | + | chr3.2:63860799-63860818 | None:intergenic | 35.0% | |
| TCTTCTGCTGAATTGTTCTT+GGG | + | chr3.2:63860295-63860314 | None:intergenic | 35.0% | |
| TGAGCTTTCGAAGAAGATTT+GGG | - | chr3.2:63860816-63860835 | MS.gene69257:CDS | 35.0% | |
| TTGAGCTTTCGAAGAAGATT+TGG | - | chr3.2:63860815-63860834 | MS.gene69257:CDS | 35.0% | |
| TTGATTTCACTGCCAAATCA+GGG | - | chr3.2:63860617-63860636 | MS.gene69257:CDS | 35.0% | |
| ! | TAGGGTTTGTTCAATTGGTT+TGG | + | chr3.2:63860377-63860396 | None:intergenic | 35.0% |
| !! | AGGATTTGGTTCCTGATTTT+AGG | + | chr3.2:63860396-63860415 | None:intergenic | 35.0% |
| !! | GGATTTGGTTCCTGATTTTA+GGG | + | chr3.2:63860395-63860414 | None:intergenic | 35.0% |
| !! | TGGATTTTGGTCTTCTTCTT+CGG | + | chr3.2:63860239-63860258 | None:intergenic | 35.0% |
| !!! | GAACCGACTTTTTCACAATT+TGG | + | chr3.2:63860675-63860694 | None:intergenic | 35.0% |
| !!! | TCAATTGGTTTGGTTTTTGG+AGG | + | chr3.2:63860367-63860386 | None:intergenic | 35.0% |
| !!! | TGGTTTTTTGAGGTGGATTT+TGG | + | chr3.2:63860252-63860271 | None:intergenic | 35.0% |
| AAAACCACCAATGGTGAATC+AGG | + | chr3.2:63860967-63860986 | None:intergenic | 40.0% | |
| ACGAGGTTGCAATTCTTCAA+GGG | - | chr3.2:63860590-63860609 | MS.gene69257:CDS | 40.0% | |
| AGCGAGGACAACTAAGAAAT+TGG | - | chr3.2:63860933-63860952 | MS.gene69257:CDS | 40.0% | |
| AGGAAACAGCTACCAAGATA+AGG | - | chr3.2:63861202-63861221 | MS.gene69257:CDS | 40.0% | |
| ATCAATTGCGCGATAAGGTA+CGG | - | chr3.2:63860713-63860732 | MS.gene69257:CDS | 40.0% | |
| CTCTTCACCACATCTATAAC+CGG | + | chr3.2:63861075-63861094 | None:intergenic | 40.0% | |
| CTTCTGCTGAATTGTTCTTG+GGG | + | chr3.2:63860294-63860313 | None:intergenic | 40.0% | |
| CTTCTTCTTGTTCTTCTCCT+CGG | + | chr3.2:63860497-63860516 | None:intergenic | 40.0% | |
| GAAGAAACTTCATCAGAAGC+AGG | - | chr3.2:63860166-63860185 | MS.gene69257:CDS | 40.0% | |
| GAGCTTTCGAAGAAGATTTG+GGG | - | chr3.2:63860817-63860836 | MS.gene69257:CDS | 40.0% | |
| GGAAACAGCTACCAAGATAA+GGG | - | chr3.2:63861203-63861222 | MS.gene69257:CDS | 40.0% | |
| GGAATCAAAGAAGGGTGAAT+TGG | - | chr3.2:63861113-63861132 | MS.gene69257:CDS | 40.0% | |
| GGTTATAGATGTGGTGAAGA+GGG | - | chr3.2:63861074-63861093 | MS.gene69257:CDS | 40.0% | |
| GTTATAGATGTGGTGAAGAG+GGG | - | chr3.2:63861075-63861094 | MS.gene69257:CDS | 40.0% | |
| GTTTCCTTCAAAACCACCAA+TGG | + | chr3.2:63860976-63860995 | None:intergenic | 40.0% | |
| TATCCTCCTTTCCATTACCA+CGG | + | chr3.2:63861011-63861030 | None:intergenic | 40.0% | |
| TCGATCGAGGAATCAAAGAA+GGG | - | chr3.2:63861105-63861124 | MS.gene69257:CDS | 40.0% | |
| TGTTCGACTTTGTCTTCTTG+CGG | + | chr3.2:63860130-63860149 | None:intergenic | 40.0% | |
| TTTGAAGGAAACTAGGAAGG+TGG | - | chr3.2:63860984-63861003 | MS.gene69257:CDS | 40.0% | |
| ! | GTCGTTTCAGAGAGTTTTCA+CGG | - | chr3.2:63860561-63860580 | MS.gene69257:CDS | 40.0% |
| ! | GTTGATTTCACTGCCAAATC+AGG | - | chr3.2:63860616-63860635 | MS.gene69257:CDS | 40.0% |
| ! | TTGTTATTGTCATCCTCCTC+CGG | + | chr3.2:63860529-63860548 | None:intergenic | 40.0% |
| ! | TTTTGAGCCGGTTATAGATG+TGG | - | chr3.2:63861065-63861084 | MS.gene69257:CDS | 40.0% |
| !!! | ATTGGTTTGGTTTTTGGAGG+TGG | + | chr3.2:63860364-63860383 | None:intergenic | 40.0% |
| !!! | GGTTTTGAAGGAAACTAGGA+AGG | - | chr3.2:63860981-63861000 | MS.gene69257:CDS | 40.0% |
| !!! | TGGTGGTTTTGAAGGAAACT+AGG | - | chr3.2:63860977-63860996 | MS.gene69257:CDS | 40.0% |
| !!! | TTCACCATTGGTGGTTTTGA+AGG | - | chr3.2:63860969-63860988 | MS.gene69257:CDS | 40.0% |
| !!! | TTGTTCTTGGGGTTGGTTTT+TGG | + | chr3.2:63860283-63860302 | None:intergenic | 40.0% |
| AGTCGGATCATTCCCTGATT+TGG | + | chr3.2:63860632-63860651 | None:intergenic | 45.0% | |
| CAAGAAGAAGGAGAAAGAGC+CGG | - | chr3.2:63860507-63860526 | MS.gene69257:CDS | 45.0% | |
| CGAGGAGAAGAACAAGAAGA+AGG | - | chr3.2:63860495-63860514 | MS.gene69257:CDS | 45.0% | |
| CGGTTATAGATGTGGTGAAG+AGG | - | chr3.2:63861073-63861092 | MS.gene69257:CDS | 45.0% | |
| CTTTCGAAGAAGATTTGGGG+TGG | - | chr3.2:63860820-63860839 | MS.gene69257:CDS | 45.0% | |
| GAAGCAGGTTCTTCATCTGA+AGG | - | chr3.2:63860181-63860200 | MS.gene69257:CDS | 45.0% | |
| GAATGGGAAAGTTAACGGGA+AGG | - | chr3.2:63860873-63860892 | MS.gene69257:CDS | 45.0% | |
| GACGAGGTTGCAATTCTTCA+AGG | - | chr3.2:63860589-63860608 | MS.gene69257:CDS | 45.0% | |
| GCTTGATCAATTGCGCGATA+AGG | - | chr3.2:63860708-63860727 | MS.gene69257:CDS | 45.0% | |
| GTCGATCGAGGAATCAAAGA+AGG | - | chr3.2:63861104-63861123 | MS.gene69257:CDS | 45.0% | |
| TGCTGAATTGTTCTTGGGGT+TGG | + | chr3.2:63860290-63860309 | None:intergenic | 45.0% | |
| ! | GCAGAAAACTGAGTTGGCTA+AGG | - | chr3.2:63861182-63861201 | MS.gene69257:CDS | 45.0% |
| ! | GTTTCAGAGAGTTTTCACGG+AGG | - | chr3.2:63860564-63860583 | MS.gene69257:CDS | 45.0% |
| !! | GGAGGATACTGGTTTGAGTT+TGG | - | chr3.2:63861023-63861042 | MS.gene69257:CDS | 45.0% |
| !! | GGTAATGGAAAGGAGGATAC+TGG | - | chr3.2:63861012-63861031 | MS.gene69257:CDS | 45.0% |
| !! | GTTGTTTTCAGCAGGTCGTT+TGG | + | chr3.2:63860443-63860462 | None:intergenic | 45.0% |
| !! | TCTATCGGCTTCGAAAAGGT+CGG | + | chr3.2:63860784-63860803 | None:intergenic | 45.0% |
| !!! | TTCTTGGGGTTGGTTTTTGG+AGG | + | chr3.2:63860280-63860299 | None:intergenic | 45.0% |
| AATTGCGCGATAAGGTACGG+AGG | - | chr3.2:63860716-63860735 | MS.gene69257:CDS | 50.0% | |
| ACTTTGTCTTCTTGCGGTGG+TGG | + | chr3.2:63860124-63860143 | None:intergenic | 50.0% | |
| CTTTGTCTTCTTGCGGTGGT+GGG | + | chr3.2:63860123-63860142 | None:intergenic | 50.0% | |
| GATGGAGCCTGATTCACCAT+TGG | - | chr3.2:63860957-63860976 | MS.gene69257:CDS | 50.0% | |
| GCAGGTTCTTCATCTGAAGG+AGG | - | chr3.2:63860184-63860203 | MS.gene69257:CDS | 50.0% | |
| TCGACTTTGTCTTCTTGCGG+TGG | + | chr3.2:63860127-63860146 | None:intergenic | 50.0% | |
| TTAAGAAAGCAGCAGCAGCG+AGG | - | chr3.2:63860917-63860936 | MS.gene69257:CDS | 50.0% | |
| ! | AGGTCGTTTGGTTCCAGATC+TGG | + | chr3.2:63860431-63860450 | None:intergenic | 50.0% |
| ! | AGTTTTCACGGAGGATGACG+AGG | - | chr3.2:63860573-63860592 | MS.gene69257:CDS | 50.0% |
| ! | GACCTTTTCGAAGCCGATAG+AGG | - | chr3.2:63860783-63860802 | MS.gene69257:CDS | 50.0% |
| ! | TCGAAGAAGATTTGGGGTGG+TGG | - | chr3.2:63860823-63860842 | MS.gene69257:CDS | 50.0% |
| !! | CTCCTCTATCGGCTTCGAAA+AGG | + | chr3.2:63860788-63860807 | None:intergenic | 50.0% |
| !! | GCTGCTGCTTTCTTAACAGC+CGG | + | chr3.2:63860913-63860932 | None:intergenic | 50.0% |
| !! | TTCGCGTCGTTGTTTTCAGC+AGG | + | chr3.2:63860451-63860470 | None:intergenic | 50.0% |
| !!! | GGAGGTGGAGTGGTTTTTTG+AGG | + | chr3.2:63860262-63860281 | None:intergenic | 50.0% |
| !!! | GGTGGAGTGGTTTTTTGAGG+TGG | + | chr3.2:63860259-63860278 | None:intergenic | 50.0% |
| !!! | GTTGGTTTTTGGAGGTGGAG+TGG | + | chr3.2:63860272-63860291 | None:intergenic | 50.0% |
| !!! | TTGGGGTTGGTTTTTGGAGG+TGG | + | chr3.2:63860277-63860296 | None:intergenic | 50.0% |
| AGATGTGGTGAAGAGGGGAG+TGG | - | chr3.2:63861080-63861099 | MS.gene69257:CDS | 55.0% | |
| AGGAAGGTGGACCGTGGTAA+TGG | - | chr3.2:63860997-63861016 | MS.gene69257:CDS | 55.0% | |
| GAAACTAGGAAGGTGGACCG+TGG | - | chr3.2:63860991-63861010 | MS.gene69257:CDS | 55.0% | |
| GAAGAAGGAGAAAGAGCCGG+AGG | - | chr3.2:63860510-63860529 | MS.gene69257:CDS | 55.0% | |
| GCGATAAGGTACGGAGGTTG+AGG | - | chr3.2:63860722-63860741 | MS.gene69257:CDS | 55.0% | |
| GGAAAGTTAACGGGAAGGCC+GGG | - | chr3.2:63860878-63860897 | MS.gene69257:CDS | 55.0% | |
| GGAGCCTGATTCACCATTGG+TGG | - | chr3.2:63860960-63860979 | MS.gene69257:CDS | 55.0% | |
| GGGAAAGTTAACGGGAAGGC+CGG | - | chr3.2:63860877-63860896 | MS.gene69257:CDS | 55.0% | |
| TCCAGATCTGGCAGGTGCTA+TGG | + | chr3.2:63860419-63860438 | None:intergenic | 55.0% | |
| TCCATAGCACCTGCCAGATC+TGG | - | chr3.2:63860415-63860434 | MS.gene69257:CDS | 55.0% | |
| ! | AACAGCCGGTTCCTTCTTCC+CGG | + | chr3.2:63860899-63860918 | None:intergenic | 55.0% |
| ! | AGATCTGGCAGGTGCTATGG+AGG | + | chr3.2:63860416-63860435 | None:intergenic | 55.0% |
| ! | CGTTTGGTTCCAGATCTGGC+AGG | + | chr3.2:63860427-63860446 | None:intergenic | 55.0% |
| ! | GGCAGGTGCTATGGAGGATT+TGG | + | chr3.2:63860410-63860429 | None:intergenic | 55.0% |
| ! | TGGTGGGTCATCTTTGACGG+CGG | + | chr3.2:63860107-63860126 | None:intergenic | 55.0% |
| !! | CGGTGGTGGGTCATCTTTGA+CGG | + | chr3.2:63860110-63860129 | None:intergenic | 55.0% |
| !! | GGACCGTGGTAATGGAAAGG+AGG | - | chr3.2:63861005-63861024 | MS.gene69257:CDS | 55.0% |
| !! | GGTGGACCGTGGTAATGGAA+AGG | - | chr3.2:63861002-63861021 | MS.gene69257:CDS | 55.0% |
| GAAGGAGAAAGAGCCGGAGG+AGG | - | chr3.2:63860513-63860532 | MS.gene69257:CDS | 60.0% | |
| GAAGGCCGGGAAGAAGGAAC+CGG | - | chr3.2:63860891-63860910 | MS.gene69257:CDS | 60.0% | |
| TAACGGGAAGGCCGGGAAGA+AGG | - | chr3.2:63860885-63860904 | MS.gene69257:CDS | 60.0% | |
| TGGGTCATCTTTGACGGCGG+CGG | + | chr3.2:63860104-63860123 | None:intergenic | 60.0% | |
| ATCTTTGACGGCGGCGGTGG+CGG | + | chr3.2:63860098-63860117 | None:intergenic | 65.0% | |
| GAGGGGAGTGGAGTCGATCG+AGG | - | chr3.2:63861092-63861111 | MS.gene69257:CDS | 65.0% | |
| GTCATCTTTGACGGCGGCGG+TGG | + | chr3.2:63860101-63860120 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63860079 | 63861254 | 63860079 | ID=MS.gene69257 |
| chr3.2 | mRNA | 63860079 | 63861254 | 63860079 | ID=MS.gene69257.t1;Parent=MS.gene69257 |
| chr3.2 | exon | 63860079 | 63861254 | 63860079 | ID=MS.gene69257.t1.exon1;Parent=MS.gene69257.t1 |
| chr3.2 | CDS | 63860079 | 63861254 | 63860079 | ID=cds.MS.gene69257.t1;Parent=MS.gene69257.t1 |
| Gene Sequence |
| Protein sequence |
